Psyllid ID: psy13998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
RCIPSEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEccccEEcccccEEEcccccEEEEccccccccccccccEEEEEcccccEEEEcccccEEEEEEccccEEEEcccccccccccEEEcccccEEEEEccccEEEEEccccEEEEEEcccccccccccccEEEEEcccccEEEEEccccEEEEEEccccEEEccccEEEEEcccccccccccccEEEEEcccccEEEEEccccEEEEEcccccEEEEccccccccccccccEEEEEcccccEEEEEccccEEEEEcccccEEEEEccccccccccccEEEEEEcccccEEEEEccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccEEEEcccccccccEEEEEccccEEEEEEccccccccccccccEEEEcccccEEEEEccccEEEEEcccccEEEEccccccccccEEEEcccccEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEccccEEEEEEccccEEEEEccccEEEcccccEEEEEccccccccccccccEEEEccccEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccccccccccccEEEcccccEEEEEccccEEEEc
Coil and Loop (DISEMBL)
rcipseakninscFLLQTLLVSgigqvgttprsqYLQKRRLQFkigsrgsepgcftwprgiavgpdnsivvadssnhrvqvcfphfdlktncvflaftwprgiavgpdnsivvadssnhrvqvfqsdgtfvgkfgsmgnkagqlehphyiavsntnrvivsdsnnhrvqifdvngrvfqsdgtfvgkfgsmgnkagqlehphyiavsntnrvivsdsnnhrvqifdvngrvitsfgsegseegqlkfprgvavddqgyisvgdsgnnriqiftpdgqflrafgcwgsgdgefkglEGVAVMSNgnilvcdrenhriqvf
Flexible Loop (DISEMBL)
rcipseakninsCFLLQTLLVSGIGQVgttprsqylQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNgnilvcdrenhriqvf
Low Complexity Region (SEG)
RCIPSEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF
Disordered region (IsUnstruct)
********NINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFG********LKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR********
Disordered Region (DISOPRED)
*************FLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF
Disordered Region (DISEMBL)
RCIPSEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF
Disordered Region (DISPRO)
*C**SEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RCIPSEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q03601	974	RING finger protein nhl-1	yes	N/A	0.824	0.270	0.438	2e-55
F6QEU4	814	E3 ubiquitin-protein liga	yes	N/A	0.846	0.331	0.397	9e-47
Q1PSW8	855	E3 ubiquitin-protein liga	yes	N/A	0.846	0.315	0.382	2e-46
Q1PRL4	876	E3 ubiquitin-protein liga	yes	N/A	0.846	0.308	0.390	4e-46
E1BJS7	868	E3 ubiquitin-protein liga	no	N/A	0.846	0.311	0.382	7e-46
Q2Q1W2	868	E3 ubiquitin-protein liga	yes	N/A	0.846	0.311	0.379	9e-46
D3ZVM4	855	E3 ubiquitin-protein liga	yes	N/A	0.846	0.315	0.379	1e-45
E7FAM5	824	E3 ubiquitin-protein liga	yes	N/A	0.667	0.258	0.427	9e-45
Q9U489	1147	Protein lin-41 OS=Caenorh	no	N/A	0.667	0.185	0.387	2e-38
A4IF63	744	Tripartite motif-containi	no	N/A	0.858	0.368	0.357	3e-38

>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1 SV=2

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 168/283 (59%), Gaps = 20/283 (7%)

Query: 46  GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV-----FLAFTWP 100
           G +G++ G   WPRGI       +   DSSNHRV V    FD     V     + A    
Sbjct: 703 GRKGAKDGELNWPRGICALSGGLVATCDSSNHRVCV----FDKDGKFVRQFGGYGAGAGQ 758

Query: 101 RGIAVGPDNS---IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
              A G  +S   ++V+D  NHR+ VF  +G  +  FG  G    +  +P  +AV +   
Sbjct: 759 LDSAAGLASSKLRVIVSDRYNHRISVFGLEGDHLFSFGGHGQGNAKFNNPWGVAVDDLGS 818

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSD 216
           + V+D +NHRVQ+FD NG+       F+ KFGS G+  GQL  P +IAVS  T+ V VSD
Sbjct: 819 IYVADKDNHRVQVFDKNGQ-------FIAKFGSFGHLPGQLNSPLFIAVSRVTHHVYVSD 871

Query: 217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
           S+NHR+ +FD +G  + SFG EG   GQ KFPRG+A+D Q  + + DSGNNRIQ+F   G
Sbjct: 872 SSNHRISVFDPHGVHLFSFGEEGFHGGQFKFPRGIAIDSQENLIIADSGNNRIQVFDAQG 931

Query: 277 QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           QF+ +FG WG G G+ KG+E V V ++G+I+V DRENHRIQ+F
Sbjct: 932 QFVSSFGTWGGGAGQLKGVEDVCVTADGSIVVTDRENHRIQIF 974

Caenorhabditis elegans (taxid: 6239)

>sp|F6QEU4|LIN41_XENTR E3 ubiquitin-protein ligase TRIM71 OS=Xenopus tropicalis GN=trim71 PE=3 SV=1

 Score =  187 bits (475), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 112/282 (39%), Positives = 152/282 (53%), Gaps = 12/282 (4%)

Query: 43  FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
              G  G   G    P G+ V  +  I+VAD SN+RVQ+  P          L      F
Sbjct: 540 LSFGGEGDHDGKLCRPWGVCVDREGYIIVADRSNNRVQIFKPCGTFHHKFGSLGSRPGQF 599

Query: 98  TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
             P G+A      IVVAD  NHRVQ+F  +G F+ KFG  G K GQ  +P  +AV++  +
Sbjct: 600 DRPAGVACDNSRRIVVADKDNHRVQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 659

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
           ++VSD+ NHRVQ+F         DGTF+ K+G  G      + P  +A S    ++V+D 
Sbjct: 660 ILVSDTRNHRVQLFG-------PDGTFLNKYGFEGALWKHFDSPRGVAFSQDGYLVVTDF 712

Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
           NNHR+ I   + +     G+EG+  GQ   P+GVAVD +G I V DS N+R+QIF P+G 
Sbjct: 713 NNHRLLIIKPDCQSAHFLGTEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFEPNGS 772

Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           FL  FG  GSG G+     G+AV  +G I+V D  N+RI  F
Sbjct: 773 FLCKFGTQGSGFGQMDRPSGIAVTPDGTIVVVDFGNNRILAF 814

E3 ubiquitin-protein ligase that cooperates with the microRNAs (miRNAs) machinery and promotes embryonic stem cells proliferation and maintenance. Binds to miRNAs and participates to post-transcriptional repression of transcripts. Required to maintain proliferation and prevent premature differentiation of neural progenitor cells during early neural development.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q1PSW8|LIN41_MOUSE E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus GN=Trim71 PE=1 SV=1

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 155/282 (54%), Gaps = 12/282 (4%)

Query: 43  FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
              GS G   G    P G++V  +  I+VAD SN+R+QV  P          L      F
Sbjct: 581 LSFGSEGDGEGKLCRPWGVSVDKEGFIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQF 640

Query: 98  TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
             P G+A      I+VAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +
Sbjct: 641 DRPAGVACDASRRIIVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 700

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
           ++VSD+ NHR+Q+F         DG F+ K+G  G+     + P  +A +N   ++V+D 
Sbjct: 701 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGSLWKHFDSPRGVAFNNEGHLVVTDF 753

Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
           NNHR+ +   + +     GSEGS  GQ   P+GVAVD +G I V DS N+R+Q+F  +G 
Sbjct: 754 NNHRLLVIHPDCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGS 813

Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           FL  FG  GSG G+     G+AV  +G I+V D  N+RI +F
Sbjct: 814 FLCKFGAQGSGFGQMDRPSGIAVTPDGLIVVVDFGNNRILIF 855

May be involved in controlling the timing of organ formation during development.

Mus musculus (taxid: 10090)

>sp|Q1PRL4|LIN41_CHICK E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus GN=TRIM71 PE=2 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/282 (39%), Positives = 152/282 (53%), Gaps = 12/282 (4%)

Query: 43  FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
              GS G   G    P G++V  +  I+VAD SN+R+QV  P          L      F
Sbjct: 602 LSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGTFHHKFGTLGSRPGQF 661

Query: 98  TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
             P G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV+   +
Sbjct: 662 DRPAGVACDVSRRIVVADKDNHRIQIFTFEGQFILKFGEKGTKNGQFNYPWDVAVNAEGK 721

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
           ++VSD+ NHRVQ+F         DG F+ K+G  G      + P  +  ++   ++V+D 
Sbjct: 722 ILVSDTRNHRVQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVTFNHEGHLVVTDF 774

Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
           NNHR+ +   + +     GSEGS  GQ   P+GVAVD +G I V DS N+R+QIF  +G 
Sbjct: 775 NNHRLLVIHADCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFESNGS 834

Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           FL  FG  GSG G+     G+AV  +G I+V D  N+RI VF
Sbjct: 835 FLCKFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILVF 876

Gallus gallus (taxid: 9031)

>sp|E1BJS7|LIN41_BOVIN E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus GN=TRIM71 PE=3 SV=2

 Score =  184 bits (467), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 154/282 (54%), Gaps = 12/282 (4%)

Query: 43  FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
              GS G   G    P G++V  +  IVVAD SN+R+QV  P          L      F
Sbjct: 594 LSFGSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQF 653

Query: 98  TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
             P G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +
Sbjct: 654 DRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 713

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
           ++VSD+ NHR+Q+F         DG F+ K+G  G      + P  +A ++   ++V+D 
Sbjct: 714 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDF 766

Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
           NNHR+ +   + +     GSEG+  GQ   P+GVAVD +G I V DS N+R+Q+F  +G 
Sbjct: 767 NNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGS 826

Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           FL  FG  GSG G+     G+AV  +G I+V D  N+RI +F
Sbjct: 827 FLCKFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILIF 868

E3 ubiquitin-protein ligase that cooperates with the microRNAs (miRNAs) machinery and promotes embryonic stem cells proliferation and maintenance. Binds to miRNAs and associates with AGO2, participating to post-transcriptional repression of transcripts such as CDKN1A. Facilitates the G1-S transition to promote rapid embryonic stem cell self-renewal by repressing CDKN1A expression. Required to maintain proliferation and prevent premature differentiation of neural progenitor cells during early neural development: positively regulates FGF signaling by controlling the stability of SHCBP1.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q2Q1W2|LIN41_HUMAN E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1

 Score =  184 bits (466), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 154/282 (54%), Gaps = 12/282 (4%)

Query: 43  FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
              GS G   G    P G++V  +  I+VAD SN+R+QV  P          L      F
Sbjct: 594 LSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQF 653

Query: 98  TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
             P G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +
Sbjct: 654 DRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 713

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
           ++VSD+ NHR+Q+F         DG F+ K+G  G      + P  +A ++   ++V+D 
Sbjct: 714 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDF 766

Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
           NNHR+ +   + +     GSEG+  GQ   P+GVAVD +G I V DS N+R+Q+F  +G 
Sbjct: 767 NNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGS 826

Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           FL  FG  GSG G+     G+A+  +G I+V D  N+RI VF
Sbjct: 827 FLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868

May be involved in controlling the timing of organ formation during development.

Homo sapiens (taxid: 9606)

>sp|D3ZVM4|LIN41_RAT E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus GN=Trim71 PE=3 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 154/282 (54%), Gaps = 12/282 (4%)

Query: 43  FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
              GS G   G    P G++V  +  I+VAD SN+R+QV  P          L      F
Sbjct: 581 LSFGSEGDGEGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQF 640

Query: 98  TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
             P G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +
Sbjct: 641 DRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 700

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
           ++VSD+ NHR+Q+F         DG F+ K+G  G+     + P  +A ++   ++V+D 
Sbjct: 701 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGSLWKHFDSPRGVAFNHEGHLVVTDF 753

Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
           NNHR+ +   + +     GSEG+  GQ   P+GVAVD +G I V DS N+R+Q+F  +G 
Sbjct: 754 NNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGS 813

Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           FL  FG  GSG G+     G+AV   G I+V D  N+RI +F
Sbjct: 814 FLCKFGAQGSGFGQMDRPSGIAVTPEGLIVVVDFGNNRILIF 855

E3 ubiquitin-protein ligase that cooperates with the microRNAs (miRNAs) machinery and promotes embryonic stem cells proliferation and maintenance. Binds to miRNAs and associates with AGO2, participating to post-transcriptional repression of transcripts such as CDKN1A. Facilitates the G1-S transition to promote rapid embryonic stem cell self-renewal by repressing CDKN1A expression. Required to maintain proliferation and prevent premature differentiation of neural progenitor cells during early neural development: positively regulates FGF signaling by controlling the stability of SHCBP1.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E7FAM5|LIN41_DANRE E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio GN=trim71 PE=2 SV=1

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 94/220 (42%), Positives = 135/220 (61%), Gaps = 7/220 (3%)

Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
           P GI V  +  +VVAD SN+RVQ+F+  GTF  KFG++G++ GQ + P  +A  +  R+I
Sbjct: 565 PWGICVDKEGYVVVADRSNNRVQIFKPCGTFHHKFGTLGSRPGQFDRPAGVACDSQRRII 624

Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
           V+D +NHR+QIF         DG F+ KFG  G K GQ  +P  +AV+   +++VSD+ N
Sbjct: 625 VADKDNHRIQIFTF-------DGQFLLKFGEKGTKNGQFNYPWDVAVNFEGKILVSDTRN 677

Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL 279
           HRVQ+F  +G  +  +G EG+       PRGVA + +G++ V D  N+R+ +  PD Q  
Sbjct: 678 HRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNHRLLVIRPDCQSA 737

Query: 280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           R  G  G+G+G+F   +GVAV     I+V D  NHRIQVF
Sbjct: 738 RFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVF 777

E3 ubiquitin-protein ligase that cooperates with the microRNAs (miRNAs) machinery and promotes embryonic stem cells proliferation and maintenance. Binds to miRNAs and participates to post-transcriptional repression of transcripts. Required to maintain proliferation and prevent premature differentiation of neural progenitor cells during early neural development.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9U489|LIN41_CAEEL Protein lin-41 OS=Caenorhabditis elegans GN=lin-41 PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 100  PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
            P GI V     ++VAD SN+RVQ+F  DG F+ KFG+ GN+ GQ + P  I  ++ N ++
Sbjct: 848  PWGICVDQRGRVIVADRSNNRVQIFDKDGNFISKFGTSGNRPGQFDRPAGITTNSLNNIV 907

Query: 160  VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
            V+D +NHRVQ+FD N       G F+ KFG  G   G   +P  +A ++ N + VSD+ N
Sbjct: 908  VADKDNHRVQVFDEN-------GMFLLKFGDRGRAVGYFNYPWGVATNSHNAIAVSDTRN 960

Query: 220  HRVQIFDVNGRVITSFGSEGSE-EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQ 277
            HRVQIF   G+ +   G + +     L  PRG+     G + + D  N+R+ + +P +  
Sbjct: 961  HRVQIFTPQGQFVRKCGFDSAYFFKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMS 1020

Query: 278  FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
             ++ +G  G GDG F   +GV +   G+ILVCD  N+R+QVF
Sbjct: 1021 EMKVYGSEGDGDGMFVRPQGVVIDPEGHILVCDSRNNRVQVF 1062

Heterochronic protein which acts downstream let-7 in temporal patterning. Represses lin-29 during late larval stages, which prevents terminal differentiation of hypodermal seam cells and promotes their division. Also governs the timing and extent of male tail tip morphogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 155/302 (51%), Gaps = 28/302 (9%)

Query: 31  PRSQYLQKRR--------LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82
           P S Y   +R        L F++G++G   G FT  +G+A   +  I++ADS+N  VQ+ 
Sbjct: 454 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIF 513

Query: 83  FPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
                 K+              P G+AV P   I++AD  N  V +F SDG F  K GS 
Sbjct: 514 SNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS- 572

Query: 138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
               G+L  P  ++V     +IV D  N    +F     +FQ +G  V +FGS GN   Q
Sbjct: 573 ----GKLMGPKGVSVDRNGHIIVVD--NKACCVF-----IFQPNGKIVTRFGSRGNGDRQ 621

Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
              PH+ AV++ N +IV+D +NH V++F+  G  +  FGS G   GQ   P GVAVD  G
Sbjct: 622 FAGPHFAAVNSNNEIIVTDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNG 681

Query: 258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
            I V D GN+RIQ+F   G FL       S D  + G +G+A+ S+G+++V D  NH  +
Sbjct: 682 NIIVADWGNSRIQVFDGSGSFLSYINT--SADPLY-GPQGLALTSDGHVVVADSGNHCFK 738

Query: 318 VF 319
           V+
Sbjct: 739 VY 740

E3 ubiquitin-protein ligase that mediates the ubiquitination of phosphorylated BCL2L11. Also mediates the UBE2D1-dependent ubiquitination of NEFL. Plays a neuroprotective function. May play a role in neuronal rapid ischemic tolerance.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
328719579	1280	PREDICTED: hypothetical protein LOC10016	0.852	0.212	0.556	1e-101
157134133	1293	tripartite motif protein trim2,3 [Aedes	0.815	0.201	0.570	1e-99
158286215	1351	AGAP007135-PA [Anopheles gambiae str. PE	0.777	0.183	0.575	8e-98
357622762	1198	hypothetical protein KGM_17545 [Danaus p	0.780	0.207	0.564	2e-97
189241070	1245	PREDICTED: similar to AGAP007135-PA [Tri	0.780	0.2	0.567	1e-96
241998856	533	nhl repeat-containing protein, putative	0.774	0.463	0.574	1e-96
328779273	1281	PREDICTED: RING finger protein nhl-1-lik	0.771	0.192	0.560	4e-96
383857485	1297	PREDICTED: RING finger protein nhl-1-lik	0.771	0.189	0.548	4e-94
383857483	1233	PREDICTED: RING finger protein nhl-1-lik	0.771	0.199	0.548	6e-94
332025715	1199	RING finger protein nhl-1 [Acromyrmex ec	0.771	0.205	0.564	1e-93

>gi|328719579|ref|XP_001944980.2| PREDICTED: hypothetical protein LOC100167755 [Acyrthosiphon pisum]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/354 (55%), Positives = 225/354 (63%), Gaps = 82/354 (23%)

Query: 6    EAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGP 65
            + KN+ S     T++ +G+  VG+TPR QYLQKR+L FKIG RGSEPG            
Sbjct: 969  DQKNMQSSPTSHTIIEAGMQGVGSTPRVQYLQKRQLLFKIGGRGSEPG------------ 1016

Query: 66   DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ 125
                                           FTWPRG+AVGPDN IVVADSSNHR+QVF 
Sbjct: 1017 ------------------------------YFTWPRGVAVGPDNLIVVADSSNHRIQVFD 1046

Query: 126  SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR--------- 176
            + G  +  FGS GN  G+ +    +AV+   + I++D  NHR+Q+ D +GR         
Sbjct: 1047 NSGKILKDFGSYGNSEGEFDCLAGVAVNRIGQYIIADRYNHRIQVLDPSGRFLRSFGSQG 1106

Query: 177  -------------------------------VFQSDGTFVGKFGSMGNKAGQLEHPHYIA 205
                                           VFQSDGTFVGKFGS GNK GQLEHPHYIA
Sbjct: 1107 SSDGRFNYPWGITTDALGFIYVCDKENHRIQVFQSDGTFVGKFGSNGNKIGQLEHPHYIA 1166

Query: 206  VSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG 265
            VSNTNRVIVSD NNHR+QIFDVNGRVI+SFG+EGSE GQ KFP+GVAVDDQGYI V DSG
Sbjct: 1167 VSNTNRVIVSDCNNHRIQIFDVNGRVISSFGTEGSENGQFKFPKGVAVDDQGYILVADSG 1226

Query: 266  NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
            NNRIQIF PD  FLRAFGCWGSGDGEFKGLEG+AVMSNGNILVCDRENHR+QVF
Sbjct: 1227 NNRIQIFHPDSTFLRAFGCWGSGDGEFKGLEGIAVMSNGNILVCDRENHRVQVF 1280

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134133|ref|XP_001663162.1| tripartite motif protein trim2,3 [Aedes aegypti] gi|108881414|gb|EAT45639.1| AAEL003104-PA [Aedes aegypti]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/342 (57%), Positives = 219/342 (64%), Gaps = 82/342 (23%)

Query: 18   TLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNH 77
            T +V   G  G +PR+QYLQKRR  F+IG RGSEPG                        
Sbjct: 994  TAVVGIPGAAGMSPRTQYLQKRRQLFQIGGRGSEPG------------------------ 1029

Query: 78   RVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
                              +FTWPRGIAVGPDNSIVVADSSNHRVQVF S+G FV +FG  
Sbjct: 1030 ------------------SFTWPRGIAVGPDNSIVVADSSNHRVQVFDSNGIFVKEFGQY 1071

Query: 138  GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR--------------------- 176
            GN  G+ +    +AV+   + I++D  NHR+Q+ D  GR                     
Sbjct: 1072 GNGDGEFDCLAGVAVNRIGQFIIADRYNHRIQVLDPAGRFLRSFGSQGTADGKFNYPWGI 1131

Query: 177  -------------------VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
                               VFQSDGTF+GKFGS G + GQLEHPHYIAVSNTNRVIVSDS
Sbjct: 1132 TTDALGFIYVCDKENHRIQVFQSDGTFIGKFGSGGKEEGQLEHPHYIAVSNTNRVIVSDS 1191

Query: 218  NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
            NNHR+QIFDVNGRV+T+FGSEGS+EGQ KFPRGVAVDDQGYI V DSGNNRIQIF PDG 
Sbjct: 1192 NNHRIQIFDVNGRVLTTFGSEGSDEGQFKFPRGVAVDDQGYICVADSGNNRIQIFHPDGS 1251

Query: 278  FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
            FLRAFG WGSGD EFKGLEGVA+MSNGNILVCDRENHR+QVF
Sbjct: 1252 FLRAFGSWGSGDAEFKGLEGVAIMSNGNILVCDRENHRVQVF 1293

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286215|ref|XP_308626.4| AGAP007135-PA [Anopheles gambiae str. PEST] gi|157020362|gb|EAA04156.5| AGAP007135-PA [Anopheles gambiae str. PEST]

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 213/330 (64%), Gaps = 82/330 (24%)

Query: 30   TPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK 89
            +PR+QYLQKRR  F+IG RGSEPG                                    
Sbjct: 1064 SPRTQYLQKRRQLFQIGGRGSEPG------------------------------------ 1087

Query: 90   TNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY 149
                  +FTWPRGIAVGPDNSIVVADSSNHRVQVF S+G FV +FG  GN  G+ +    
Sbjct: 1088 ------SFTWPRGIAVGPDNSIVVADSSNHRVQVFDSNGIFVKEFGQYGNGDGEFDCLAG 1141

Query: 150  IAVSNTNRVIVSDSNNHRVQIFDVNGR--------------------------------- 176
            +AV+   + I++D  NHR+Q+ D  GR                                 
Sbjct: 1142 VAVNRIGQFIIADRYNHRIQVLDPAGRFLRSFGSQGTTDGKFNYPWGITTDALGFIYVCD 1201

Query: 177  -------VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 229
                   VFQSDG+F+GKFG+ G + GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG
Sbjct: 1202 KENHRIQVFQSDGSFIGKFGTCGKEKGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 1261

Query: 230  RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGD 289
            RV+T+FG EGSEEGQ KFPRGVAVDDQGYI V DSGNNRIQIF PDG FLRAFG WGSGD
Sbjct: 1262 RVLTTFGGEGSEEGQFKFPRGVAVDDQGYICVADSGNNRIQIFHPDGSFLRAFGSWGSGD 1321

Query: 290  GEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
             EFKGLEGVA+MSNGNILVCDRENHR+QVF
Sbjct: 1322 AEFKGLEGVAIMSNGNILVCDRENHRVQVF 1351

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622762|gb|EHJ74161.1| hypothetical protein KGM_17545 [Danaus plexippus]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 187/331 (56%), Positives = 216/331 (65%), Gaps = 82/331 (24%)

Query: 29   TTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL 88
            ++PRSQYLQKRRLQF +GSRGSEPGCFT                                
Sbjct: 910  SSPRSQYLQKRRLQFSVGSRGSEPGCFT-------------------------------- 937

Query: 89   KTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH 148
                      WPRGIAVGP+N +VVADSSNHRVQVF S+G F+ +FG  G+  G+ +   
Sbjct: 938  ----------WPRGIAVGPENIMVVADSSNHRVQVFDSNGIFIKEFGQYGSGEGEFDCLA 987

Query: 149  YIAVSNTNRVIVSDSNNHRVQIFDVNGR-------------------------------- 176
             +AV+   + I++D  NHR+Q+FD  GR                                
Sbjct: 988  GVAVNRIGQYIIADRYNHRIQVFDPAGRFLRSFGSQGTGDGKFNYPWGITTDALGFIYVC 1047

Query: 177  --------VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
                    VFQSDGTFVGKFGS G+K GQLEHPHYIAVS+TNRV+VSDSNNHR+Q+FDVN
Sbjct: 1048 DKENHRVQVFQSDGTFVGKFGSFGSKLGQLEHPHYIAVSSTNRVLVSDSNNHRIQVFDVN 1107

Query: 229  GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG 288
            GRV++SFG EGSE+GQ KFPRGVAVDDQGYI V DSGNNRIQIF PDG FLRAFG WG G
Sbjct: 1108 GRVLSSFGEEGSEDGQFKFPRGVAVDDQGYIVVADSGNNRIQIFHPDGTFLRAFGSWGCG 1167

Query: 289  DGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
            DGEFKGLEG+AVMS GNI+VCDRENHR+QVF
Sbjct: 1168 DGEFKGLEGIAVMSGGNIIVCDRENHRVQVF 1198

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241070|ref|XP_001808548.1| PREDICTED: similar to AGAP007135-PA [Tribolium castaneum]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/331 (56%), Positives = 216/331 (65%), Gaps = 82/331 (24%)

Query: 29   TTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL 88
            T+PRSQYLQK +  F+IGSRGSE GCFT                                
Sbjct: 957  TSPRSQYLQKCQQLFEIGSRGSEAGCFT-------------------------------- 984

Query: 89   KTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH 148
                      WPRG+AVGPDNSIVVADSSNHRVQVF S+G F+ +FG  GN  G+ +   
Sbjct: 985  ----------WPRGVAVGPDNSIVVADSSNHRVQVFDSNGRFLKEFGQYGNGEGEFDCLA 1034

Query: 149  YIAVSNTNRVIVSDSNNHRVQIFDVNGR-------------------------------- 176
             +AV+   + I++D  NHR+Q+FD +GR                                
Sbjct: 1035 GVAVNRIGQFIIADRYNHRIQVFDPSGRFLRAFGSQGTADGRFNYPWGITTDALGFIYVC 1094

Query: 177  --------VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
                    VFQSDGTFVGKFGSMG+K GQLEHPHYIAVSNTNRV+VSDSNNHR+QIFDVN
Sbjct: 1095 DKENHRVQVFQSDGTFVGKFGSMGSKEGQLEHPHYIAVSNTNRVVVSDSNNHRIQIFDVN 1154

Query: 229  GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG 288
            G+V++SFGSEGS++GQ KFPRGVAVDDQGYI V DSGNNRIQIF PDG FLR+FGCWG G
Sbjct: 1155 GKVLSSFGSEGSDDGQFKFPRGVAVDDQGYICVADSGNNRIQIFHPDGTFLRSFGCWGIG 1214

Query: 289  DGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
             GEFKGLEGVA+  NG+ILVCDRENHRIQVF
Sbjct: 1215 KGEFKGLEGVAMTPNGHILVCDRENHRIQVF 1245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241998856|ref|XP_002434071.1| nhl repeat-containing protein, putative [Ixodes scapularis] gi|215495830|gb|EEC05471.1| nhl repeat-containing protein, putative [Ixodes scapularis]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/329 (57%), Positives = 216/329 (65%), Gaps = 82/329 (24%)

Query: 31  PRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT 90
           PRS YLQKRR+Q KIG+RG+EPGCFT                                  
Sbjct: 247 PRSMYLQKRRMQLKIGTRGTEPGCFT---------------------------------- 272

Query: 91  NCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYI 150
                   WPRG+AVGPDNSIVVADSSNHRVQVF S G F  +FG+ G+  G+ +    +
Sbjct: 273 --------WPRGVAVGPDNSIVVADSSNHRVQVFDSSGRFQHEFGTYGSSEGEFDCLAGV 324

Query: 151 AVSNTNRVIVSDSNNHRVQIFDVNGR---------------------------------- 176
           AV+   + IVSD  NHR+QIFD +GR                                  
Sbjct: 325 AVNRIGQFIVSDRYNHRIQIFDPSGRFLRSFGCEGRVDARFNYPWGITTDSLGFIYVCDK 384

Query: 177 ------VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 230
                 VFQSDGTFVGKFGS+G++ G LEHPHY+AVSNTNRVIVSDSNNHR+QIFDVNGR
Sbjct: 385 ENHRVQVFQSDGTFVGKFGSLGSRPGHLEHPHYVAVSNTNRVIVSDSNNHRIQIFDVNGR 444

Query: 231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDG 290
            +++FGSEGS++GQ KFPRGVAVDDQGYI VGDSGNNRIQIF PDG FLRAFG WGSGDG
Sbjct: 445 SLSTFGSEGSDDGQFKFPRGVAVDDQGYIMVGDSGNNRIQIFHPDGSFLRAFGQWGSGDG 504

Query: 291 EFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           EFKGLEG+AVM NG+I+VCDRENHRIQVF
Sbjct: 505 EFKGLEGIAVMPNGSIVVCDRENHRIQVF 533

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779273|ref|XP_391967.4| PREDICTED: RING finger protein nhl-1-like [Apis mellifera]

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 184/328 (56%), Positives = 209/328 (63%), Gaps = 82/328 (25%)

Query: 32   RSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN 91
            RS YL KRR  FK G RGSEPGCFT                                   
Sbjct: 996  RSHYLLKRRQLFKFGMRGSEPGCFT----------------------------------- 1020

Query: 92   CVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
                   WPRG+AVGPDNSIVVADSSNHRVQVF  +G F+ +FGS G+  G+ +    +A
Sbjct: 1021 -------WPRGLAVGPDNSIVVADSSNHRVQVFDCNGNFMKEFGSYGSGEGEFDCLAGVA 1073

Query: 152  VSNTNRVIVSDSNNHRVQIFDVNGR----------------------------------- 176
            V+   + I++D  NHR+Q+ D +GR                                   
Sbjct: 1074 VNRIGQYIIADRYNHRIQVLDPSGRFLRAFGSQGTADGRFNYPWGITTDALGFIYVCDKE 1133

Query: 177  -----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
                 VFQSDGTFVGKFGS G+  GQLEHPHYIAVSNTNRVIVSD NNHR+QIFDVNGRV
Sbjct: 1134 NHRVQVFQSDGTFVGKFGSCGSGRGQLEHPHYIAVSNTNRVIVSDGNNHRIQIFDVNGRV 1193

Query: 232  ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
            +TSFGSEGS+EGQ KFPRGVAVDDQGYI V DSGNNRIQIF+P+G FL++FG WGSGDGE
Sbjct: 1194 LTSFGSEGSDEGQFKFPRGVAVDDQGYIVVADSGNNRIQIFSPEGAFLKSFGGWGSGDGE 1253

Query: 292  FKGLEGVAVMSNGNILVCDRENHRIQVF 319
            FKGLEGVAV S GNI+VCDRENHR+QVF
Sbjct: 1254 FKGLEGVAVTSTGNIVVCDRENHRVQVF 1281

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857485|ref|XP_003704235.1| PREDICTED: RING finger protein nhl-1-like isoform 2 [Megachile rotundata]

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 180/328 (54%), Positives = 208/328 (63%), Gaps = 82/328 (25%)

Query: 32   RSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN 91
            RS YL KRR  FK G RGSE GCFT                                   
Sbjct: 1012 RSHYLLKRRQLFKFGMRGSEAGCFT----------------------------------- 1036

Query: 92   CVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
                   WPRG+AVGPDN+IVVADSSNHRVQVF  +G F+ +FG+ G+  G+ +    +A
Sbjct: 1037 -------WPRGLAVGPDNTIVVADSSNHRVQVFDCNGNFMKEFGTYGSGEGEFDCLAGVA 1089

Query: 152  VSNTNRVIVSDSNNHRVQIFDVNGR----------------------------------- 176
            V+   + I++D  NHR+Q+ D +GR                                   
Sbjct: 1090 VNRIGQYIIADRYNHRIQVLDPSGRFLRAFGSQGTADGRFNYPWGITTDALGFIYVCDKE 1149

Query: 177  -----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
                 VFQSDGTFVGKFGS G+  GQLEHPHYIAVSNTNRVIVSD NNHR+QIFDVNGRV
Sbjct: 1150 NHRVQVFQSDGTFVGKFGSCGSGRGQLEHPHYIAVSNTNRVIVSDGNNHRIQIFDVNGRV 1209

Query: 232  ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
            +TSFGSEGS+EGQ KFPRGVAVDDQGYI V DSGNNRIQIF+P+G +L++FG WGSGDGE
Sbjct: 1210 LTSFGSEGSDEGQFKFPRGVAVDDQGYIVVADSGNNRIQIFSPEGAYLKSFGGWGSGDGE 1269

Query: 292  FKGLEGVAVMSNGNILVCDRENHRIQVF 319
            FKGLEGVAV S GNI+VCDRENHR+QVF
Sbjct: 1270 FKGLEGVAVTSTGNIVVCDRENHRVQVF 1297

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857483|ref|XP_003704234.1| PREDICTED: RING finger protein nhl-1-like isoform 1 [Megachile rotundata]

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 180/328 (54%), Positives = 208/328 (63%), Gaps = 82/328 (25%)

Query: 32   RSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN 91
            RS YL KRR  FK G RGSE GCFT                                   
Sbjct: 948  RSHYLLKRRQLFKFGMRGSEAGCFT----------------------------------- 972

Query: 92   CVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
                   WPRG+AVGPDN+IVVADSSNHRVQVF  +G F+ +FG+ G+  G+ +    +A
Sbjct: 973  -------WPRGLAVGPDNTIVVADSSNHRVQVFDCNGNFMKEFGTYGSGEGEFDCLAGVA 1025

Query: 152  VSNTNRVIVSDSNNHRVQIFDVNGR----------------------------------- 176
            V+   + I++D  NHR+Q+ D +GR                                   
Sbjct: 1026 VNRIGQYIIADRYNHRIQVLDPSGRFLRAFGSQGTADGRFNYPWGITTDALGFIYVCDKE 1085

Query: 177  -----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
                 VFQSDGTFVGKFGS G+  GQLEHPHYIAVSNTNRVIVSD NNHR+QIFDVNGRV
Sbjct: 1086 NHRVQVFQSDGTFVGKFGSCGSGRGQLEHPHYIAVSNTNRVIVSDGNNHRIQIFDVNGRV 1145

Query: 232  ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
            +TSFGSEGS+EGQ KFPRGVAVDDQGYI V DSGNNRIQIF+P+G +L++FG WGSGDGE
Sbjct: 1146 LTSFGSEGSDEGQFKFPRGVAVDDQGYIVVADSGNNRIQIFSPEGAYLKSFGGWGSGDGE 1205

Query: 292  FKGLEGVAVMSNGNILVCDRENHRIQVF 319
            FKGLEGVAV S GNI+VCDRENHR+QVF
Sbjct: 1206 FKGLEGVAVTSTGNIVVCDRENHRVQVF 1233

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025715|gb|EGI65873.1| RING finger protein nhl-1 [Acromyrmex echinatior]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/328 (56%), Positives = 209/328 (63%), Gaps = 82/328 (25%)

Query: 32   RSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN 91
            RS YL KRR  FK G RGSE GCFT                                   
Sbjct: 914  RSHYLLKRRQLFKFGMRGSEAGCFT----------------------------------- 938

Query: 92   CVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
                   WPRG+AVGPDNSIVVADSSNHRVQVF  +G F+ +FG+ G+  G+ +    +A
Sbjct: 939  -------WPRGLAVGPDNSIVVADSSNHRVQVFDGNGNFMKEFGTYGSNEGEFDCLAGVA 991

Query: 152  VSNTNRVIVSDSNNHRVQIFDVNGR----------------------------------- 176
            V+   + I++D  NHR+Q+ D +GR                                   
Sbjct: 992  VNRIGQYIIADRYNHRIQVLDPSGRFLRAFGSQGTADGRFNYPWGITTDALGFIYVCDKE 1051

Query: 177  -----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
                 VFQSDGTFVGKFGS G+  GQLEHPHYIAVSNTNRVIVSD NNHRVQIFDVNGRV
Sbjct: 1052 NHRVQVFQSDGTFVGKFGSCGSGRGQLEHPHYIAVSNTNRVIVSDGNNHRVQIFDVNGRV 1111

Query: 232  ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
            +TSFGSEGS+EGQ KFPRGVAVDDQGYI V DSGNNRIQIF+PDG FL++FGCWGSGDGE
Sbjct: 1112 LTSFGSEGSDEGQFKFPRGVAVDDQGYIIVADSGNNRIQIFSPDGAFLKSFGCWGSGDGE 1171

Query: 292  FKGLEGVAVMSNGNILVCDRENHRIQVF 319
            FKGLEGVAV S GNI+VCDRENHR+QVF
Sbjct: 1172 FKGLEGVAVTSTGNIVVCDRENHRVQVF 1199

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
WB|WBGene00003597	974	nhl-1 [Caenorhabditis elegans	0.896	0.293	0.417	6.7e-56
UNIPROTKB|Q03601	974	nhl-1 "RING finger protein nhl	0.896	0.293	0.417	6.7e-56
UNIPROTKB|F1NTC2	585	TRIM71 "E3 ubiquitin-protein l	0.836	0.456	0.397	2.3e-46
MGI|MGI:2685973	855	Trim71 "tripartite motif-conta	0.836	0.312	0.390	5e-46
UNIPROTKB|F6QEU4	814	trim71 "E3 ubiquitin-protein l	0.836	0.328	0.405	6.5e-46
UNIPROTKB|Q1PRL4	876	TRIM71 "E3 ubiquitin-protein l	0.836	0.304	0.397	1.5e-45
UNIPROTKB|F1Q0E3	868	TRIM71 "Uncharacterized protei	0.836	0.307	0.394	3.1e-45
UNIPROTKB|E1BJS7	868	TRIM71 "E3 ubiquitin-protein l	0.836	0.307	0.390	3.1e-45
RGD|1566388	855	Trim71 "tripartite motif conta	0.836	0.312	0.387	3.7e-45
UNIPROTKB|Q2Q1W2	868	TRIM71 "E3 ubiquitin-protein l	0.836	0.307	0.387	4e-45

WB|WBGene00003597 nhl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 583 (210.3 bits), Expect = 6.7e-56, P = 6.7e-56
 Identities = 126/302 (41%), Positives = 176/302 (58%)

Query:    25 GQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP 84
             G+  +    ++  + R +   G +G++ G   WPRGI       +   DSSNHRV  C  
Sbjct:   682 GRSASREAGEWRARGRPRAVFGRKGAKDGELNWPRGICALSGGLVATCDSSNHRV--CVF 739

Query:    85 HFDLKTNCVFLAFTWPRG---IAVGPDNS---IVVADSSNHRVQVFQSDGTFVGKFGSMG 138
               D K    F  +    G    A G  +S   ++V+D  NHR+ VF  +G  +  FG  G
Sbjct:   740 DKDGKFVRQFGGYGAGAGQLDSAAGLASSKLRVIVSDRYNHRISVFGLEGDHLFSFGGHG 799

Query:   139 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198
                 +  +P  +AV +   + V+D +NHRVQ+FD NG+       F+ KFGS G+  GQL
Sbjct:   800 QGNAKFNNPWGVAVDDLGSIYVADKDNHRVQVFDKNGQ-------FIAKFGSFGHLPGQL 852

Query:   199 EHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
               P +IAVS  T+ V VSDS+NHR+ +FD +G  + SFG EG   GQ KFPRG+A+D Q 
Sbjct:   853 NSPLFIAVSRVTHHVYVSDSSNHRISVFDPHGVHLFSFGEEGFHGGQFKFPRGIAIDSQE 912

Query:   258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
              + + DSGNNRIQ+F   GQF+ +FG WG G G+ KG+E V V ++G+I+V DRENHRIQ
Sbjct:   913 NLIIADSGNNRIQVFDAQGQFVSSFGTWGGGAGQLKGVEDVCVTADGSIVVTDRENHRIQ 972

Query:   318 VF 319
             +F
Sbjct:   973 IF 974

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|Q03601 nhl-1 "RING finger protein nhl-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 583 (210.3 bits), Expect = 6.7e-56, P = 6.7e-56
 Identities = 126/302 (41%), Positives = 176/302 (58%)

Query:    25 GQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP 84
             G+  +    ++  + R +   G +G++ G   WPRGI       +   DSSNHRV  C  
Sbjct:   682 GRSASREAGEWRARGRPRAVFGRKGAKDGELNWPRGICALSGGLVATCDSSNHRV--CVF 739

Query:    85 HFDLKTNCVFLAFTWPRG---IAVGPDNS---IVVADSSNHRVQVFQSDGTFVGKFGSMG 138
               D K    F  +    G    A G  +S   ++V+D  NHR+ VF  +G  +  FG  G
Sbjct:   740 DKDGKFVRQFGGYGAGAGQLDSAAGLASSKLRVIVSDRYNHRISVFGLEGDHLFSFGGHG 799

Query:   139 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198
                 +  +P  +AV +   + V+D +NHRVQ+FD NG+       F+ KFGS G+  GQL
Sbjct:   800 QGNAKFNNPWGVAVDDLGSIYVADKDNHRVQVFDKNGQ-------FIAKFGSFGHLPGQL 852

Query:   199 EHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
               P +IAVS  T+ V VSDS+NHR+ +FD +G  + SFG EG   GQ KFPRG+A+D Q 
Sbjct:   853 NSPLFIAVSRVTHHVYVSDSSNHRISVFDPHGVHLFSFGEEGFHGGQFKFPRGIAIDSQE 912

Query:   258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
              + + DSGNNRIQ+F   GQF+ +FG WG G G+ KG+E V V ++G+I+V DRENHRIQ
Sbjct:   913 NLIIADSGNNRIQVFDAQGQFVSSFGTWGGGAGQLKGVEDVCVTADGSIVVTDRENHRIQ 972

Query:   318 VF 319
             +F
Sbjct:   973 IF 974

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NTC2 TRIM71 "E3 ubiquitin-protein ligase TRIM71" [Gallus gallus (taxid:9031)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 111/279 (39%), Positives = 154/279 (55%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             GS G   G    P G++V  +  I+VAD SN+R+QV  P   F  K   +      F  P
Sbjct:   314 GSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGTFHHKFGTLGSRPGQFDRP 373

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV+   +++V
Sbjct:   374 AGVACDVSRRIVVADKDNHRIQIFTFEGQFILKFGEKGTKNGQFNYPWDVAVNAEGKILV 433

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHRVQ+F         DG F+ K+G  G      + P  +  ++   ++V+D NNH
Sbjct:   434 SDTRNHRVQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVTFNHEGHLVVTDFNNH 486

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ +   + +     GSEGS  GQ   P+GVAVD +G I V DS N+R+QIF  +G FL 
Sbjct:   487 RLLVIHADCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFESNGSFLC 546

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+AV  +G I+V D  N+RI VF
Sbjct:   547 KFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILVF 585

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0051246 "regulation of protein metabolic process" evidence=IEA

GO:0071310 "cellular response to organic substance" evidence=IEA

GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IEA

MGI|MGI:2685973 Trim71 "tripartite motif-containing 71" [Mus musculus (taxid:10090)]

 Score = 490 (177.5 bits), Expect = 5.0e-46, P = 5.0e-46
 Identities = 109/279 (39%), Positives = 157/279 (56%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             GS G   G    P G++V  +  I+VAD SN+R+QV  P   F  K   +      F  P
Sbjct:   584 GSEGDGEGKLCRPWGVSVDKEGFIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRP 643

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      I+VAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +++V
Sbjct:   644 AGVACDASRRIIVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILV 703

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHR+Q+F         DG F+ K+G  G+     + P  +A +N   ++V+D NNH
Sbjct:   704 SDTRNHRIQLFG-------PDGVFLNKYGFEGSLWKHFDSPRGVAFNNEGHLVVTDFNNH 756

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ +   + +     GSEGS  GQ   P+GVAVD +G I V DS N+R+Q+F  +G FL 
Sbjct:   757 RLLVIHPDCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLC 816

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+AV  +G I+V D  N+RI +F
Sbjct:   817 KFGAQGSGFGQMDRPSGIAVTPDGLIVVVDFGNNRILIF 855

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0001843 "neural tube closure" evidence=IMP

GO:0003723 "RNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IMP

GO:0010586 "miRNA metabolic process" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0021915 "neural tube development" evidence=IDA

GO:0031047 "gene silencing by RNA" evidence=IEA

GO:0035198 "miRNA binding" evidence=IDA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051246 "regulation of protein metabolic process" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0060964 "regulation of gene silencing by miRNA" evidence=IGI;IMP

GO:0071310 "cellular response to organic substance" evidence=IDA

GO:0072089 "stem cell proliferation" evidence=IMP

GO:2000177 "regulation of neural precursor cell proliferation" evidence=IMP

GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IMP;IDA

UNIPROTKB|F6QEU4 trim71 "E3 ubiquitin-protein ligase TRIM71" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 488 (176.8 bits), Expect = 6.5e-46, P = 6.5e-46
 Identities = 113/279 (40%), Positives = 154/279 (55%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             G  G   G    P G+ V  +  I+VAD SN+RVQ+  P   F  K   +      F  P
Sbjct:   543 GGEGDHDGKLCRPWGVCVDREGYIIVADRSNNRVQIFKPCGTFHHKFGSLGSRPGQFDRP 602

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      IVVAD  NHRVQ+F  +G F+ KFG  G K GQ  +P  +AV++  +++V
Sbjct:   603 AGVACDNSRRIVVADKDNHRVQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILV 662

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHRVQ+F         DGTF+ K+G  G      + P  +A S    ++V+D NNH
Sbjct:   663 SDTRNHRVQLFG-------PDGTFLNKYGFEGALWKHFDSPRGVAFSQDGYLVVTDFNNH 715

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ I   + +     G+EG+  GQ   P+GVAVD +G I V DS N+R+QIF P+G FL 
Sbjct:   716 RLLIIKPDCQSAHFLGTEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFEPNGSFLC 775

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+AV  +G I+V D  N+RI  F
Sbjct:   776 KFGTQGSGFGQMDRPSGIAVTPDGTIVVVDFGNNRILAF 814

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISS

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0010586 "miRNA metabolic process" evidence=ISS

GO:0021915 "neural tube development" evidence=ISS

GO:0035198 "miRNA binding" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0060964 "regulation of gene silencing by miRNA" evidence=ISS

GO:0072089 "stem cell proliferation" evidence=ISS

GO:2000177 "regulation of neural precursor cell proliferation" evidence=ISS

UNIPROTKB|Q1PRL4 TRIM71 "E3 ubiquitin-protein ligase TRIM71" [Gallus gallus (taxid:9031)]

 Score = 486 (176.1 bits), Expect = 1.5e-45, P = 1.5e-45
 Identities = 111/279 (39%), Positives = 154/279 (55%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             GS G   G    P G++V  +  I+VAD SN+R+QV  P   F  K   +      F  P
Sbjct:   605 GSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGTFHHKFGTLGSRPGQFDRP 664

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV+   +++V
Sbjct:   665 AGVACDVSRRIVVADKDNHRIQIFTFEGQFILKFGEKGTKNGQFNYPWDVAVNAEGKILV 724

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHRVQ+F         DG F+ K+G  G      + P  +  ++   ++V+D NNH
Sbjct:   725 SDTRNHRVQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVTFNHEGHLVVTDFNNH 777

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ +   + +     GSEGS  GQ   P+GVAVD +G I V DS N+R+QIF  +G FL 
Sbjct:   778 RLLVIHADCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFESNGSFLC 837

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+AV  +G I+V D  N+RI VF
Sbjct:   838 KFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILVF 876

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0010586 "miRNA metabolic process" evidence=ISS

GO:0021915 "neural tube development" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0060964 "regulation of gene silencing by miRNA" evidence=ISS

GO:0072089 "stem cell proliferation" evidence=ISS

GO:2000177 "regulation of neural precursor cell proliferation" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:0035198 "miRNA binding" evidence=ISS

UNIPROTKB|F1Q0E3 TRIM71 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 483 (175.1 bits), Expect = 3.1e-45, P = 3.1e-45
 Identities = 110/279 (39%), Positives = 156/279 (55%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             GS G   G    P G++V  +  IVVAD SN+R+QV  P   F  K   +      F  P
Sbjct:   597 GSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGTFHHKFGTLGSRPGQFDRP 656

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      IVVAD  NHR+QVF  +G F+ KFG  G K GQ  +P  +AV++  +++V
Sbjct:   657 AGVACDTSRRIVVADKDNHRIQVFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILV 716

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHR+Q+F         DG F+ K+G  G      + P  +A ++   ++V+D NNH
Sbjct:   717 SDTRNHRIQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNH 769

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ +   + +     GSEG+  GQ   P+GVAVD +G I V DS N+R+Q+F  +G FL 
Sbjct:   770 RLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLC 829

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+AV  +G I+V D  N+RI +F
Sbjct:   830 KFGTQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILIF 868

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E1BJS7 TRIM71 "E3 ubiquitin-protein ligase TRIM71" [Bos taurus (taxid:9913)]

 Score = 483 (175.1 bits), Expect = 3.1e-45, P = 3.1e-45
 Identities = 109/279 (39%), Positives = 156/279 (55%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             GS G   G    P G++V  +  IVVAD SN+R+QV  P   F  K   +      F  P
Sbjct:   597 GSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRP 656

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +++V
Sbjct:   657 AGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILV 716

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHR+Q+F         DG F+ K+G  G      + P  +A ++   ++V+D NNH
Sbjct:   717 SDTRNHRIQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNH 769

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ +   + +     GSEG+  GQ   P+GVAVD +G I V DS N+R+Q+F  +G FL 
Sbjct:   770 RLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLC 829

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+AV  +G I+V D  N+RI +F
Sbjct:   830 KFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILIF 868

GO:0035198 "miRNA binding" evidence=ISS

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:2000177 "regulation of neural precursor cell proliferation" evidence=ISS

GO:0072089 "stem cell proliferation" evidence=ISS

GO:0060964 "regulation of gene silencing by miRNA" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

GO:0021915 "neural tube development" evidence=ISS

GO:0010586 "miRNA metabolic process" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISS

GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1566388 Trim71 "tripartite motif containing 71, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 482 (174.7 bits), Expect = 3.7e-45, P = 3.7e-45
 Identities = 108/279 (38%), Positives = 156/279 (55%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             GS G   G    P G++V  +  I+VAD SN+R+QV  P   F  K   +      F  P
Sbjct:   584 GSEGDGEGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRP 643

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +++V
Sbjct:   644 AGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILV 703

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHR+Q+F         DG F+ K+G  G+     + P  +A ++   ++V+D NNH
Sbjct:   704 SDTRNHRIQLFG-------PDGVFLNKYGFEGSLWKHFDSPRGVAFNHEGHLVVTDFNNH 756

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ +   + +     GSEG+  GQ   P+GVAVD +G I V DS N+R+Q+F  +G FL 
Sbjct:   757 RLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLC 816

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+AV   G I+V D  N+RI +F
Sbjct:   817 KFGAQGSGFGQMDRPSGIAVTPEGLIVVVDFGNNRILIF 855

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISO;ISS

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO;ISS

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISO;ISS

GO:0010586 "miRNA metabolic process" evidence=ISO;ISS

GO:0021915 "neural tube development" evidence=ISO;ISS

GO:0035198 "miRNA binding" evidence=ISO;ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISO;ISS

GO:0051246 "regulation of protein metabolic process" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO;ISS

GO:0060964 "regulation of gene silencing by miRNA" evidence=ISO;ISS

GO:0071310 "cellular response to organic substance" evidence=ISO

GO:0072089 "stem cell proliferation" evidence=ISO;ISS

GO:2000177 "regulation of neural precursor cell proliferation" evidence=ISO;ISS

GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IEA;ISO

UNIPROTKB|Q2Q1W2 TRIM71 "E3 ubiquitin-protein ligase TRIM71" [Homo sapiens (taxid:9606)]

 Score = 482 (174.7 bits), Expect = 4.0e-45, P = 4.0e-45
 Identities = 108/279 (38%), Positives = 156/279 (55%)

Query:    46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKTNCVFLA---FTWP 100
             GS G   G    P G++V  +  I+VAD SN+R+QV  P   F  K   +      F  P
Sbjct:   597 GSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRP 656

Query:   101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
              G+A      IVVAD  NHR+Q+F  +G F+ KFG  G K GQ  +P  +AV++  +++V
Sbjct:   657 AGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILV 716

Query:   161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
             SD+ NHR+Q+F         DG F+ K+G  G      + P  +A ++   ++V+D NNH
Sbjct:   717 SDTRNHRIQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNH 769

Query:   221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
             R+ +   + +     GSEG+  GQ   P+GVAVD +G I V DS N+R+Q+F  +G FL 
Sbjct:   770 RLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLC 829

Query:   281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              FG  GSG G+     G+A+  +G I+V D  N+RI VF
Sbjct:   830 KFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0010586 "miRNA metabolic process" evidence=ISS

GO:0021915 "neural tube development" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0060964 "regulation of gene silencing by miRNA" evidence=ISS

GO:0072089 "stem cell proliferation" evidence=ISS

GO:2000177 "regulation of neural precursor cell proliferation" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:0035198 "miRNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	319
COG3391	381	COG3391, COG3391, Uncharacterized conserved protei	8e-12
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	3e-10
pfam01436	28	pfam01436, NHL, NHL repeat	4e-07
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	3e-06
pfam01436	28	pfam01436, NHL, NHL repeat	3e-06
pfam01436	28	pfam01436, NHL, NHL repeat	4e-06
COG3391	381	COG3391, COG3391, Uncharacterized conserved protei	1e-05
pfam01436	28	pfam01436, NHL, NHL repeat	2e-05
pfam01436	28	pfam01436, NHL, NHL repeat	2e-05
pfam01436	28	pfam01436, NHL, NHL repeat	2e-04
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	3e-04
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	3e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-04
COG3391	381	COG3391, COG3391, Uncharacterized conserved protei	0.002
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function unknown]

 Score = 64.9 bits (158), Expect = 8e-12
 Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 40/243 (16%)

Query: 55  FTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV--FLAFTW-PRGIAVGPDN- 109
             +P G+AV P  + V V    ++ V V     D  TN V   +     P G+AV PD  
Sbjct: 73  GVYPAGVAVNPAGNKVYVTTGDSNTVSV----IDTATNTVLGSIPVGLGPVGLAVDPDGK 128

Query: 110 SIVVADS--SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNH 166
            + VA++   N+ V V  +    V     +GN       P  +AV  + N+V V++S+++
Sbjct: 129 YVYVANAGNGNNTVSVIDAATNKVTATIPVGN------TPTGVAVDPDGNKVYVTNSDDN 182

Query: 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIF 225
            V + D +G             GS+G+  G    P  IAV  + NRV V++  +    + 
Sbjct: 183 TVSVIDTSGNSV--------VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234

Query: 226 DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-----------YISVGDSGNNRIQIFTP 274
            ++        ++         PRGVAVD  G            +SV D   +R+    P
Sbjct: 235 KIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292

Query: 275 DGQ 277
            G 
Sbjct: 293 TGN 295

Length = 381

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 30/211 (14%)

Query: 96  AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQ-----------SDGTFVGKFGSMGNKAG- 142
           +F  P GI++ PD   + +ADS +  ++               D TF       G+  G 
Sbjct: 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797

Query: 143 ----QLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVFQSDGTFVGKFGSMGNKAGQ 197
                L+HP  +  +   ++ V+DS NH+++  D    RV    GT    F        Q
Sbjct: 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857

Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN---GRVITSFGSEGSE-----EGQLKFPR 249
           L  P  +A+    R+ V+D+NN  ++  D+N      I +   +G +        LK  R
Sbjct: 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLR 917

Query: 250 GVAVDDQGYISV----GDSGNNRIQIFTPDG 276
             +  D   I V       G+ +++I  P G
Sbjct: 918 RRSSADTQVIKVDGVTSLEGDLQLKISLPPG 948

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 45.5 bits (109), Expect = 4e-07
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 97  FTWPRGIAVGPDNSIVVADSSNHRVQVF 124
           F  P G+AV  D  + VADS NHRVQVF
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 25/196 (12%)

Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVS 161
           IA+   + I   + S+   +VF  DG      GS G  +     P  I++S +   + ++
Sbjct: 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSG-TSTSFAQPSGISLSPDLKELYIA 757

Query: 162 DSNNHRVQIFDVN---------GRVFQSDGTFVGKFGS---MGNKAGQLEHPHYIAVSNT 209
           DS +  ++  D+          G    SD  F  KFG    +G++   L+HP  +  +  
Sbjct: 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLF--KFGDHDGVGSEV-LLQHPLGVLCAKD 814

Query: 210 NRVIVSDSNNHRVQIFD-VNGRVIT--SFGSEGSEEG-----QLKFPRGVAVDDQGYISV 261
            ++ V+DS NH+++  D    RV T    G  G ++G     QL  P G+A+ + G + V
Sbjct: 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874

Query: 262 GDSGNNRIQIFTPDGQ 277
            D+ N+ I+    +  
Sbjct: 875 ADTNNSLIRYLDLNKG 890

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQV 81
          F  P G+AV  D  + VADS NHRVQV
Sbjct: 1  FNRPHGVAVDSDGDVYVADSENHRVQV 27

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 42.4 bits (101), Expect = 4e-06
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319
           F    GVAV S+G++ V D ENHR+QVF
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function unknown]

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 200 HPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG- 257
           +P  +AV+   N+V V+  +++ V + D     +      G        P G+AVD  G 
Sbjct: 75  YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL------GPVGLAVDPDGK 128

Query: 258 --YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENH 314
             Y++   +GNN + +       + A    G+         GVAV  +GN + V + +++
Sbjct: 129 YVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT------GVAVDPDGNKVYVTNSDDN 182

Query: 315 RIQVF 319
            + V 
Sbjct: 183 TVSVI 187

Length = 381

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
              PH +AV +   V V+DS NHRVQ+F
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIF 225
              PH +AV +   V V+DS NHRVQ+F
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 245 LKFPRGVAVDDQGYISVGDSGNNRIQIF 272
              P GVAVD  G + V DS N+R+Q+F
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 42/252 (16%)

Query: 108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGN---KAGQLE-----HPHYIAV-SNTNRV 158
           +N + ++DS+++R+ V   DG F+ + GS G    + G  E      P  +A  +  N +
Sbjct: 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638

Query: 159 IVSDSNNHRVQIFD-VNGRVFQSDGTFVGKFGSMGNKAGQLE----------HPH----Y 203
            V+D+ NH ++  D VN  V    G         G K G  +           P     Y
Sbjct: 639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY 698

Query: 204 IAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD---DQGYIS 260
           IA++  +++   + ++   ++F  +G      GS G+     + P G+++     + YI+
Sbjct: 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQ-PSGISLSPDLKELYIA 757

Query: 261 VGDSGNNRIQIFTPDGQFLRAFG-------CWGSGDGEFKGLE-------GVAVMSNGNI 306
             +S + R       G  L A G        +  GD +  G E       GV    +G I
Sbjct: 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI 817

Query: 307 LVCDRENHRIQV 318
            V D  NH+I+ 
Sbjct: 818 YVADSYNHKIKK 829

Length = 1057

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 204 IAVSNTNR-VIVSDSNNHRVQIFDV--------NGRVITSFGSEGSEEGQLKFPRGVAVD 254
           +A S   + +  +DS   R+  FD         N RV   F     E      P G+AVD
Sbjct: 138 LAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRRVFADFKDGDGE------PDGMAVD 191

Query: 255 DQGYISVGDSGNNRIQIFTPDGQFLR 280
            +G + V   G  ++  + PDG+ L 
Sbjct: 192 AEGNVWVARWGGGKVVRYDPDGKLLG 217

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 50/273 (18%), Positives = 101/273 (36%), Gaps = 51/273 (18%)

Query: 59  RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVA 114
             +A  PD  ++   S +  ++V    +DL+T  +           R +A   D + + +
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKV----WDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 115 DSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQI 170
            SS+  ++++    G  V              H  Y+   A S   R++ S S +  +++
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTG---------HTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQIFDV 227
           +DV      +  T  G             H  ++   A S     + S S +  ++++D+
Sbjct: 120 WDVETGKCLT--TLRG-------------HTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 228 -NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG 286
             G+ + +        G       VA    G   +  S +  I+++           C G
Sbjct: 165 RTGKCVATL------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-----CLG 213

Query: 287 SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           +  G   G+  VA   +G +L    E+  I+V+
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function unknown]

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 23/142 (16%)

Query: 58  PRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLA--------FTWPRGIAVGPD 108
           P G+AV PD N + V +S ++ V V     D   N V            T P GIAV PD
Sbjct: 162 PTGVAVDPDGNKVYVTNSDDNTVSV----IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217

Query: 109 NSIVVA---DSSNHRVQVFQSDGTFVGKFGSMGNKA---GQLEHPH----YIAVSNTNRV 158
            + V      S ++ V    +    V             G    P     Y+A S    V
Sbjct: 218 GNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTV 277

Query: 159 IVSDSNNHRVQIFDVNGRVFQS 180
            V D    RV      G     
Sbjct: 278 SVIDGATDRVVKTGPTGNEALG 299

Length = 381

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 23/144 (15%)

Query: 146 HPHYI---AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH 202
           H   +   A S   +++ + S +  ++++D+         T  G  G + +         
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLKGHTGPVRD--------- 56

Query: 203 YIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV 261
            +A S     + S S++  ++++D+  G  + +        G   +   VA    G I  
Sbjct: 57  -VAASADGTYLASGSSDKTIRLWDLETGECVRTL------TGHTSYVSSVAFSPDGRILS 109

Query: 262 GDSGNNRIQIF-TPDGQFLRAFGC 284
             S +  I+++    G+ L     
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRG 133

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0286|consensus	343		100.0
KOG0279|consensus	315		99.97
KOG0272|consensus	459		99.97
KOG0315|consensus	311		99.97
KOG0284|consensus	464		99.96
KOG0279|consensus	315		99.96
KOG0286|consensus	343		99.96
KOG0293|consensus	519		99.96
KOG0263|consensus	707		99.96
KOG0315|consensus	311		99.96
KOG0282|consensus	503		99.95
KOG0275|consensus	508		99.95
KOG0318|consensus	603		99.95
KOG0263|consensus	707		99.95
KOG0285|consensus	460		99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0273|consensus	524		99.95
KOG0292|consensus	1202		99.95
KOG0285|consensus	460		99.95
KOG0296|consensus	399		99.95
KOG0291|consensus	893		99.94
KOG0266|consensus	456		99.94
KOG0291|consensus	893		99.94
KOG0295|consensus	406		99.94
KOG0273|consensus	524		99.93
KOG0265|consensus	338		99.93
KOG1446|consensus	311		99.93
KOG0266|consensus	456		99.93
KOG0318|consensus	603		99.93
KOG0645|consensus	312		99.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.93
KOG0645|consensus	312		99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0316|consensus	307		99.92
KOG1446|consensus	311		99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0295|consensus	406		99.92
KOG0278|consensus	334		99.92
KOG0306|consensus	888		99.92
KOG0284|consensus	464		99.92
KOG0319|consensus	775		99.92
KOG0643|consensus	327		99.92
KOG0282|consensus	503		99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
KOG0265|consensus	338		99.91
KOG1407|consensus	313		99.91
KOG0283|consensus	712		99.9
KOG0276|consensus	794		99.9
KOG0292|consensus	1202		99.9
KOG0293|consensus	519		99.9
KOG0276|consensus	794		99.9
KOG0640|consensus	430		99.9
KOG0772|consensus	641		99.89
KOG1407|consensus	313		99.89
KOG0310|consensus	487		99.89
KOG0275|consensus	508		99.89
KOG0772|consensus	641		99.89
KOG0641|consensus	350		99.88
KOG2096|consensus	420		99.88
KOG0288|consensus	459		99.88
KOG0281|consensus	499		99.88
KOG0268|consensus	433		99.88
KOG0306|consensus	888		99.88
PTZ00421	493	coronin; Provisional	99.87
KOG0319|consensus	775		99.87
KOG2055|consensus	514		99.87
KOG0313|consensus	423		99.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.87
KOG0278|consensus	334		99.87
KOG0640|consensus	430		99.87
KOG0973|consensus	942		99.86
KOG0299|consensus	479		99.86
KOG0294|consensus	362		99.86
KOG0301|consensus	745		99.86
KOG0289|consensus	506		99.86
KOG0296|consensus	399		99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG0641|consensus	350		99.85
KOG0316|consensus	307		99.85
KOG0305|consensus	484		99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG0283|consensus	712		99.85
KOG2106|consensus	626		99.85
KOG0289|consensus	506		99.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.85
KOG0281|consensus	499		99.84
KOG2096|consensus	420		99.84
PTZ00421	493	coronin; Provisional	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG0310|consensus	487		99.84
KOG0268|consensus	433		99.84
KOG0643|consensus	327		99.84
KOG1539|consensus	910		99.83
KOG0277|consensus	311		99.83
KOG0301|consensus	745		99.83
KOG0639|consensus	705		99.83
KOG0647|consensus	347		99.82
PTZ00420	568	coronin; Provisional	99.82
KOG0308|consensus	735		99.82
PTZ00420	568	coronin; Provisional	99.82
KOG0973|consensus	942		99.82
KOG1332|consensus	299		99.81
KOG0274|consensus	537		99.81
KOG0277|consensus	311		99.81
KOG0639|consensus	705		99.8
KOG1408|consensus	1080		99.8
KOG1274|consensus	933		99.79
KOG0299|consensus	479		99.79
KOG1538|consensus	1081		99.79
KOG2106|consensus	626		99.79
KOG0308|consensus	735		99.79
KOG1063|consensus	764		99.79
KOG0313|consensus	423		99.78
KOG0646|consensus	476		99.78
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.78
KOG0288|consensus	459		99.78
KOG0647|consensus	347		99.77
KOG0646|consensus	476		99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG2048|consensus	691		99.76
KOG1036|consensus	323		99.76
KOG1274|consensus	933		99.76
KOG2445|consensus	361		99.76
KOG0305|consensus	484		99.75
KOG1273|consensus	405		99.75
KOG0300|consensus	481		99.75
KOG0274|consensus	537		99.75
KOG2048|consensus	691		99.75
KOG0264|consensus	422		99.74
KOG1273|consensus	405		99.74
KOG2055|consensus	514		99.73
KOG1036|consensus	323		99.73
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.73
KOG0294|consensus	362		99.73
KOG0267|consensus	825		99.71
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.69
KOG1539|consensus	910		99.68
KOG0650|consensus	733		99.67
KOG4283|consensus	397		99.67
KOG2919|consensus	406		99.67
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.67
KOG0321|consensus	720		99.66
KOG0300|consensus	481		99.66
KOG4328|consensus	498		99.66
KOG0269|consensus	839		99.65
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.65
KOG2919|consensus	406		99.65
KOG1063|consensus	764		99.65
KOG0650|consensus	733		99.64
KOG0270|consensus	463		99.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.62
KOG0642|consensus	577		99.61
KOG1332|consensus	299		99.61
KOG4283|consensus	397		99.61
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.61
KOG0267|consensus	825		99.6
KOG1408|consensus	1080		99.6
KOG1009|consensus	434		99.59
KOG4378|consensus	673		99.59
KOG1538|consensus	1081		99.59
KOG1517|consensus	1387		99.56
KOG1272|consensus	545		99.56
KOG1524|consensus	737		99.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.55
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.55
KOG0307|consensus	1049		99.55
KOG0264|consensus	422		99.54
KOG4659|consensus	1899		99.54
KOG1034|consensus	385		99.54
KOG0321|consensus	720		99.53
KOG0322|consensus	323		99.53
KOG0303|consensus	472		99.52
KOG0303|consensus	472		99.52
KOG0269|consensus	839		99.51
KOG0771|consensus	398		99.51
KOG0649|consensus	325		99.5
KOG4378|consensus	673		99.5
KOG1334|consensus	559		99.5
KOG1524|consensus	737		99.49
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.48
KOG4328|consensus	498		99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
KOG2110|consensus	391		99.45
KOG0270|consensus	463		99.45
KOG0302|consensus	440		99.45
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	99.44
KOG1310|consensus	758		99.43
KOG4227|consensus	609		99.43
COG3391	381	Uncharacterized conserved protein [Function unknow	99.43
KOG4659|consensus	1899		99.43
KOG0307|consensus	1049		99.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.42
KOG0642|consensus	577		99.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.4
KOG0649|consensus	325		99.4
KOG2445|consensus	361		99.4
KOG0771|consensus	398		99.39
COG2319	466	FOG: WD40 repeat [General function prediction only	99.38
KOG1445|consensus	1012		99.37
KOG1034|consensus	385		99.36
KOG0644|consensus	1113		99.35
PRK01742	429	tolB translocation protein TolB; Provisional	99.35
PRK03629	429	tolB translocation protein TolB; Provisional	99.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.34
KOG1272|consensus	545		99.34
KOG2110|consensus	391		99.33
KOG1007|consensus	370		99.33
KOG1517|consensus	1387		99.33
COG3391	381	Uncharacterized conserved protein [Function unknow	99.32
KOG0302|consensus	440		99.32
KOG1963|consensus	792		99.32
KOG2321|consensus	703		99.32
KOG1188|consensus	376		99.31
KOG4497|consensus	447		99.31
KOG1963|consensus	792		99.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.3
KOG1587|consensus	555		99.29
KOG3881|consensus	412		99.29
PRK05137	435	tolB translocation protein TolB; Provisional	99.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.29
PRK04922	433	tolB translocation protein TolB; Provisional	99.26
PRK03629	429	tolB translocation protein TolB; Provisional	99.26
PRK01742	429	tolB translocation protein TolB; Provisional	99.26
KOG1523|consensus	361		99.26
KOG1523|consensus	361		99.26
PRK05137	435	tolB translocation protein TolB; Provisional	99.24
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.24
KOG1009|consensus	434		99.24
KOG4497|consensus	447		99.24
KOG2139|consensus	445		99.24
KOG1445|consensus	1012		99.23
PRK04922	433	tolB translocation protein TolB; Provisional	99.22
PRK02889	427	tolB translocation protein TolB; Provisional	99.21
KOG2111|consensus	346		99.2
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.2
COG2319	466	FOG: WD40 repeat [General function prediction only	99.19
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.19
PRK02889	427	tolB translocation protein TolB; Provisional	99.18
KOG1587|consensus	555		99.18
KOG2394|consensus	636		99.16
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	99.16
KOG2139|consensus	445		99.15
KOG1310|consensus	758		99.15
KOG1007|consensus	370		99.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.12
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.12
KOG2111|consensus	346		99.11
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	99.11
KOG4499|consensus	310		99.1
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
KOG2394|consensus	636		99.09
KOG1240|consensus	1431		99.08
KOG1188|consensus	376		99.08
KOG0322|consensus	323		99.08
KOG4227|consensus	609		99.07
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.06
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.06
KOG3881|consensus	412		99.06
PRK00178	430	tolB translocation protein TolB; Provisional	99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.04
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.01
KOG0290|consensus	364		99.01
PRK00178	430	tolB translocation protein TolB; Provisional	99.01
KOG0290|consensus	364		99.0
KOG1334|consensus	559		99.0
COG4946	668	Uncharacterized protein related to the periplasmic	98.98
KOG1240|consensus	1431		98.95
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.93
KOG4547|consensus	541		98.93
KOG1354|consensus	433		98.92
KOG1520|consensus	376		98.92
PRK01029	428	tolB translocation protein TolB; Provisional	98.91
PRK01029	428	tolB translocation protein TolB; Provisional	98.88
KOG0974|consensus	967		98.88
KOG1409|consensus	404		98.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.78
PRK04043	419	tolB translocation protein TolB; Provisional	98.77
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.77
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.74
KOG1520|consensus	376		98.72
KOG2321|consensus	703		98.72
PRK02888	635	nitrous-oxide reductase; Validated	98.72
KOG4547|consensus	541		98.7
KOG0644|consensus	1113		98.7
KOG0974|consensus	967		98.7
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.68
KOG4499|consensus	310		98.68
KOG1214|consensus	1289		98.67
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.64
COG4946	668	Uncharacterized protein related to the periplasmic	98.63
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.63
KOG2314|consensus	698		98.62
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.61
PRK02888	635	nitrous-oxide reductase; Validated	98.61
KOG1354|consensus	433		98.59
KOG3914|consensus	390		98.59
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.53
PRK04043	419	tolB translocation protein TolB; Provisional	98.52
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.51
KOG1214|consensus	1289		98.51
KOG1064|consensus	2439		98.49
KOG4190|consensus	1034		98.49
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.49
KOG2041|consensus	1189		98.47
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.47
KOG3914|consensus	390		98.45
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.43
KOG2315|consensus	566		98.39
KOG2315|consensus	566		98.39
KOG4532|consensus	344		98.34
KOG1920|consensus	1265		98.33
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.28
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.28
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.25
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.24
KOG1409|consensus	404		98.16
KOG0882|consensus	558		98.16
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.13
KOG1920|consensus	1265		98.12
KOG2041|consensus	1189		98.11
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.05
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.01
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.97
PHA02713	557	hypothetical protein; Provisional	97.97
KOG1064|consensus	2439		97.97
KOG3621|consensus	726		97.95
KOG4190|consensus	1034		97.94
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.93
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.93
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.92
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.89
KOG4441|consensus	571		97.89
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.87
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.87
KOG2114|consensus	933		97.85
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.84
KOG0280|consensus	339		97.81
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.78
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.78
KOG0882|consensus	558		97.76
PHA02713	557	hypothetical protein; Provisional	97.75
KOG2695|consensus	425		97.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.7
KOG2114|consensus	933		97.68
KOG1645|consensus	463		97.64
KOG4532|consensus	344		97.64
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.63
KOG4649|consensus	354		97.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.58
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.56
KOG3617|consensus	1416		97.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.52
KOG2066|consensus	846		97.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.46
KOG2695|consensus	425		97.43
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	97.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.42
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.39
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.39
KOG1275|consensus	1118		97.36
PHA03098	534	kelch-like protein; Provisional	97.34
KOG4714|consensus	319		97.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.34
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.28
KOG4441|consensus	571		97.27
KOG2314|consensus	698		97.26
KOG4714|consensus	319		97.25
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.24
KOG3621|consensus	726		97.16
KOG1275|consensus	1118		97.13
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	97.11
KOG4649|consensus	354		97.09
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.07
PHA03098	534	kelch-like protein; Provisional	97.0
PHA02790	480	Kelch-like protein; Provisional	96.99
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.99
KOG2066|consensus	846		96.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.94
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.87
KOG2395|consensus	644		96.85
KOG3617|consensus	1416		96.83
KOG0280|consensus	339		96.8
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.76
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.75
PHA02790	480	Kelch-like protein; Provisional	96.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.68
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.65
KOG1008|consensus	783		96.64
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.62
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.59
KOG2395|consensus	644		96.59
KOG0309|consensus	1081		96.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.53
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	96.51
KOG1832|consensus	1516		96.4
PLN02153	341	epithiospecifier protein	96.38
KOG0309|consensus	1081		96.38
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.31
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.26
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.13
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.08
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.02
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.98
KOG1645|consensus	463		95.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.94
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.93
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	95.89
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	95.81
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.78
KOG3630|consensus	1405		95.66
KOG4640|consensus	665		95.61
KOG4640|consensus	665		95.38
KOG1912|consensus	1062		95.3
KOG1912|consensus	1062		95.16
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.12
KOG1008|consensus	783		95.05
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.88
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.85
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.61
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.32
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	94.24
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.11
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.01
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	93.99
KOG2444|consensus	238		93.98
PRK13616	591	lipoprotein LpqB; Provisional	93.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.53
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.5
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.44
PRK13684	334	Ycf48-like protein; Provisional	93.42
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.36
KOG1832|consensus	1516		93.34
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.23
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	93.21
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	93.08
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	92.85
PLN02193	470	nitrile-specifier protein	92.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.58
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	92.58
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.46
PRK13616	591	lipoprotein LpqB; Provisional	92.28
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.06
COG3211	616	PhoX Predicted phosphatase [General function predi	91.98
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.78
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	91.56
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	91.46
PRK13684	334	Ycf48-like protein; Provisional	91.4
PLN02193	470	nitrile-specifier protein	91.39
PLN02153	341	epithiospecifier protein	91.32
COG5167	776	VID27 Protein involved in vacuole import and degra	91.23
KOG2079|consensus	1206		91.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	90.79
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.28
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	90.16
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.1
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.71
COG4590	733	ABC-type uncharacterized transport system, permeas	89.6
COG5167	776	VID27 Protein involved in vacuole import and degra	89.55
COG3211	616	PhoX Predicted phosphatase [General function predi	89.15
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.46
KOG3630|consensus	1405		87.87
KOG2079|consensus	1206		87.33
KOG2444|consensus	238		86.16
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	86.01
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.97
TIGR02608	55	delta_60_rpt delta-60 repeat domain. This domain o	84.38
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	84.33
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.9
COG1520	370	FOG: WD40-like repeat [Function unknown]	83.78
KOG2280|consensus	829		83.72
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	82.32
KOG2377|consensus	657		81.38
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	81.27
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.21
KOG2280|consensus	829		80.11

>KOG0271|consensus

Probab=100.00  E-value=2e-34  Score=215.83  Aligned_cols=264  Identities=17%  Similarity=0.305  Sum_probs=213.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.++.|+|++..|++++.+.++.+|+..        .||.++|.+|+++|||+.+++++.+|+|++    |++++++
T Consensus       115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l----wdpktg~  190 (480)
T KOG0271|consen  115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL----WDPKTGQ  190 (480)
T ss_pred             CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE----ecCCCCC
Confidence            4567889999999999999999999999754        578899999999999999999999999999    8887766


Q ss_pred             eeE-----EecCceeeEEcC-----CCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEE
Q psy13998         93 VFL-----AFTWPRGIAVGP-----DNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS  161 (319)
Q Consensus        93 ~~~-----~~~~~~~l~~~~-----~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~  161 (319)
                      .+.     |-..+.+++|.|     ..+++++++.|+.+++||. -+..+..+      .+|...++++.+-.+| ++++
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l------sgHT~~VTCvrwGG~g-liyS  263 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL------SGHTASVTCVRWGGEG-LIYS  263 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe------ccCccceEEEEEcCCc-eEEe
Confidence            554     455788888865     4568899999999999995 45556555      6788888999987655 6778


Q ss_pred             eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE-----------EcC----------------------
Q psy13998        162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-----------VSN----------------------  208 (319)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----------------------  208 (319)
                      ++.|++|++|+...      |.+.+.+      .+|...++.|+           |++                      
T Consensus       264 gS~DrtIkvw~a~d------G~~~r~l------kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  264 GSQDRTIKVWRALD------GKLCREL------KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             cCCCceEEEEEccc------hhHHHhh------cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            89999999998763      2333222      11111222222           112                      


Q ss_pred             ---CCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEee
Q psy13998        209 ---TNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAF  282 (319)
Q Consensus       209 ---~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~  282 (319)
                         .+..+|+++.+..+++|++.  -+.+.+.      .+|...++.+.|+||++++++++-|..|++|+ .+|+.+..+
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm------tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf  405 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRM------TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF  405 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhh------hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence               23469999999999999964  3345555      67888899999999999999999999999999 789999999


Q ss_pred             cccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                            .+|...+..++++.|.+++++++.|.++++|
T Consensus       406 ------RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw  436 (480)
T KOG0271|consen  406 ------RGHVAAVYQVAWSADSRLLVSGSKDSTLKVW  436 (480)
T ss_pred             ------hhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence                  7899999999999999999999999999998

>KOG0272|consensus

Probab=100.00  E-value=5.4e-34  Score=215.86  Aligned_cols=265  Identities=12%  Similarity=0.170  Sum_probs=229.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      ...+..+.||.++..++++++....+.|...        .||...+.++.|.|.  +.-+++++.||++++    |+..+
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl----w~~~~  250 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL----WKLSQ  250 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee----eccCC
Confidence            4568899999999999999999998888654        567789999999996  558999999999999    88876


Q ss_pred             ceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         91 NCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        91 ~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      ...+.    |...+..++|+|+|+++.+++.|.+-++||... ..+...      .+|...+.+++|.+||.+..+++.|
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------EGHs~~v~~iaf~~DGSL~~tGGlD  324 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------EGHSKGVFSIAFQPDGSLAATGGLD  324 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh------cccccccceeEecCCCceeeccCcc
Confidence            54443    556788999999999999999999999999543 333222      6788899999999999999999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCccc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQ  244 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~  244 (319)
                      ..-++||+++      |+.+..+      .+|...+.+++|+|+|..+++++.|+.+++||... ..+..+      ++|
T Consensus       325 ~~~RvWDlRt------gr~im~L------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i------pAH  386 (459)
T KOG0272|consen  325 SLGRVWDLRT------GRCIMFL------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI------PAH  386 (459)
T ss_pred             chhheeeccc------CcEEEEe------cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec------ccc
Confidence            9999999984      4555555      56778889999999999999999999999999754 345555      788


Q ss_pred             ccCcceEEEcC-CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        245 LKFPRGVAVDD-QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       245 ~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+-+..++++| .|+++++++.|+++.+|. .++..++.+      .+|...+.++.+++|+..+++++.|+++++|
T Consensus       387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL------AGHEGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh------cCCccceEEEEeccCCceEEEeccCceeeec
Confidence            88899999998 579999999999999999 577888888      7899999999999999999999999999998

>KOG0271|consensus

Probab=100.00  E-value=2.4e-33  Score=210.10  Aligned_cols=282  Identities=16%  Similarity=0.244  Sum_probs=233.4

Q ss_pred             hhhhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCC---------CCcCCCCcceEEcC-----CC
Q psy13998          4 PSEAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE---------PGCFTWPRGIAVGP-----DN   67 (319)
Q Consensus         4 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~-----~g   67 (319)
                      +.+.+|..+..++++++  ..=|.+++++|++..++++..+..+..|+..         +||..++.+++|.|     ..
T Consensus       138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~  217 (480)
T KOG0271|consen  138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC  217 (480)
T ss_pred             eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc
Confidence            56788889999999998  5679999999999999999999999888744         56778999999964     46


Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCC
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAG  142 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~  142 (319)
                      +++++++.||.+++    ||......+.    |...+.++.+-.+ .++++++.|++|++|+ .+|+....+      .+
T Consensus       218 r~las~skDg~vrI----Wd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~l------kG  286 (480)
T KOG0271|consen  218 RRLASSSKDGSVRI----WDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCREL------KG  286 (480)
T ss_pred             cceecccCCCCEEE----EEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhh------cc
Confidence            78999999999999    9987665655    3346788888644 4788899999999999 778877777      56


Q ss_pred             CCCCceeEEEe-----------CCC-------------------------eEEEEeCCCCEEEEEecCCceeeecCceee
Q psy13998        143 QLEHPHYIAVS-----------NTN-------------------------RVIVSDSNNHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       143 ~~~~~~~l~~~-----------~~g-------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                      |...++.|+++           +.+                         ..+++++.|..+.+|+...     ..+.+.
T Consensus       287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~-----~kkpi~  361 (480)
T KOG0271|consen  287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK-----SKKPIT  361 (480)
T ss_pred             cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc-----cccchh
Confidence            66666666654           223                         3499999999999998752     112333


Q ss_pred             eecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        187 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                      +.      .+|...++.+.|+||++++++++.|..|++|+ .+|+.+..+      .+|...+..++++.|.+++|+++.
T Consensus       362 rm------tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf------RGHv~~VYqvawsaDsRLlVS~Sk  429 (480)
T KOG0271|consen  362 RM------TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF------RGHVAAVYQVAWSADSRLLVSGSK  429 (480)
T ss_pred             hh------hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh------hhccceeEEEEeccCccEEEEcCC
Confidence            33      56677788899999999999999999999999 689999888      789999999999999999999999


Q ss_pred             CCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |.++.+|+... ++...+      ++|...+.++.++|||..+++++.|..+++|
T Consensus       430 DsTLKvw~V~tkKl~~DL------pGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  430 DSTLKVWDVRTKKLKQDL------PGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             CceEEEEEeeeeeecccC------CCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            99999999544 444445      6788999999999999999999999999998

>KOG0286|consensus

Probab=100.00  E-value=1.1e-30  Score=189.24  Aligned_cols=266  Identities=12%  Similarity=0.208  Sum_probs=222.9

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCc--------CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC--------FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-   91 (319)
                      .+.|..+-|+++.+.+.+++++.++-+|+.....        -.+|...+|+|.|+++++++-|+...+    |++.+. 
T Consensus        55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi----y~ls~~d  130 (343)
T KOG0286|consen   55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI----YPLSTRD  130 (343)
T ss_pred             ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE----Eeccccc
Confidence            5778888899999999999999888888766543        257788899999999999998988888    766533 


Q ss_pred             -e----eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEE
Q psy13998         92 -C----VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIV  160 (319)
Q Consensus        92 -~----~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~  160 (319)
                       +    ...    |-....+..|.. ...++++++|.+..+|| ++|+.+..+      .+|...+.++++.| +++.|+
T Consensus       131 ~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f------~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  131 AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF------HGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEe------cCCcccEEEEecCCCCCCeEE
Confidence             1    111    233556777776 45678889999999999 889999888      68889999999999 899999


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG  239 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~  239 (319)
                      +++.|+..++||++      ++..+..|      ++|...++.+.|.|+|.-|++++.++..++||. ..+.+..+..  
T Consensus       204 Sg~cD~~aklWD~R------~~~c~qtF------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~--  269 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVR------SGQCVQTF------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH--  269 (343)
T ss_pred             ecccccceeeeecc------CcceeEee------cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc--
Confidence            99999999999998      44667777      677788999999999999999999999999995 4556666532  


Q ss_pred             CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                        ......+++++|+..|++++++..|.++.+|| ..++.+..+      .+|.++++++.++|||..+++++.|..+||
T Consensus       270 --~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L------~GHeNRvScl~~s~DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  270 --DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL------AGHENRVSCLGVSPDGMAVATGSWDSTLRI  341 (343)
T ss_pred             --CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe------eccCCeeEEEEECCCCcEEEecchhHheee
Confidence              22334578999999999999999999999999 678888888      689999999999999999999999999999


Q ss_pred             C
Q psy13998        319 F  319 (319)
Q Consensus       319 ~  319 (319)
                      |
T Consensus       342 W  342 (343)
T KOG0286|consen  342 W  342 (343)
T ss_pred             c
Confidence            9

>KOG0279|consensus

Probab=99.97  E-value=3.8e-29  Score=180.13  Aligned_cols=271  Identities=15%  Similarity=0.188  Sum_probs=202.9

Q ss_pred             cccccccCCCcc-chhccccceeeeecccC-------------CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccc
Q psy13998         21 VSGIGQVGTTPR-SQYLQKRRLQFKIGSRG-------------SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF   86 (319)
Q Consensus        21 ~~~i~~~~~~~~-~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~   86 (319)
                      .+-|..++..+. ..++.+++.+.++-.|.             ...||-..+..++.+++|++.++++.|+++++    |
T Consensus        15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl----W   90 (315)
T KOG0279|consen   15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL----W   90 (315)
T ss_pred             CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE----E
Confidence            344555554443 44555555555433331             23567788999999999999999999999999    9


Q ss_pred             ccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC--CeEEE
Q psy13998         87 DLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIV  160 (319)
Q Consensus        87 ~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~  160 (319)
                      |+.+++....    -..+.+++|++|.+.+++++.|++|.+|+.-|....++...    .+...+.++.|+|+  .-+++
T Consensus        91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~----~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED----SHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC----CCcCcEEEEEEcCCCCCcEEE
Confidence            9988765553    34678999999999999999999999999777766665422    12578899999996  67889


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEG  239 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~  239 (319)
                      +++.|+.+++||+++.      ++...+      .++....+.++++|||.+.+++..++.+.+||.+ ++.+..+    
T Consensus       167 s~s~DktvKvWnl~~~------~l~~~~------~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----  230 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNC------QLRTTF------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----  230 (315)
T ss_pred             EccCCceEEEEccCCc------chhhcc------ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----
Confidence            9999999999999865      333333      4566778889999999999999999999999964 5555554    


Q ss_pred             CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCC---CCCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998        240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGS---GDGEFKGLEGVAVMSNGNILVCDRENHR  315 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~v~~~~~~~  315 (319)
                         .+...+.+++|+|+ +++++......|.+||.+. ..+..+.....   .........++++++||..++++..|+.
T Consensus       231 ---~a~~~v~sl~fspn-rywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  231 ---EAFDIVNSLCFSPN-RYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             ---cCCCeEeeEEecCC-ceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence               56677899999998 5555556667799999654 44443322111   1122234567899999999999999999


Q ss_pred             EEeC
Q psy13998        316 IQVF  319 (319)
Q Consensus       316 i~v~  319 (319)
                      |++|
T Consensus       307 irv~  310 (315)
T KOG0279|consen  307 IRVW  310 (315)
T ss_pred             EEEE
Confidence            9997

>KOG0272|consensus

Probab=99.97  E-value=2.2e-29  Score=191.04  Aligned_cols=236  Identities=15%  Similarity=0.190  Sum_probs=200.0

Q ss_pred             CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCC--CcEEEEcCCCCeEEE
Q psy13998         50 SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQV  123 (319)
Q Consensus        50 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~  123 (319)
                      .+.|.-..+..+.|+.+++.+++++.+|.+++    |+..+.....    |...+.++.|+|.  +.-+++++.|+.+++
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kv----W~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKV----WSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeE----eecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence            34444567788999999999999999999999    8876654444    3447789999997  457889999999999


Q ss_pred             EcCCC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        124 FQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       124 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      |+.++ .++..+      .+|...+..++|+|+|+++.+++.|.+-++||+.++      +.+...      .+|...+.
T Consensus       246 w~~~~e~~l~~l------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk------~ElL~Q------EGHs~~v~  307 (459)
T KOG0272|consen  246 WKLSQETPLQDL------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK------SELLLQ------EGHSKGVF  307 (459)
T ss_pred             eccCCCcchhhh------hcchhhheeeeecCCCceeeecccccchhhcccccc------hhhHhh------cccccccc
Confidence            99665 566666      678899999999999999999999999999999864      221111      56777889


Q ss_pred             eEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEE
Q psy13998        203 YIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLR  280 (319)
Q Consensus       203 ~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~  280 (319)
                      +++|.++|.+..+++.|..=++|| .+|..+..+      .+|...+.+++|+|+|+.+++++.|+++++||..+ +.+.
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly  381 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY  381 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCcEEEEe------cccccceeeEeECCCceEEeecCCCCcEEEeeecccccce
Confidence            999999999999999999999999 578888888      78899999999999999999999999999999543 4466


Q ss_pred             eecccCCCCCCCCCcceEEEcc-CCcEEEEeCCCCeEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMS-NGNILVCDRENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~-~g~~~v~~~~~~~i~v~  319 (319)
                      ++      +.|.+-++.+.|+| .|.++++++.|+++++|
T Consensus       382 ~i------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW  415 (459)
T KOG0272|consen  382 TI------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW  415 (459)
T ss_pred             ec------ccccchhhheEecccCCeEEEEcccCcceeee
Confidence            66      78999999999998 57799999999999998

>KOG0315|consensus

Probab=99.97  E-value=4.6e-28  Score=171.96  Aligned_cols=261  Identities=11%  Similarity=0.157  Sum_probs=199.6

Q ss_pred             chhccccceeeeecccCCCCCc--------CCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eEEe----c
Q psy13998         33 SQYLQKRRLQFKIGSRGSEPGC--------FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FLAF----T   98 (319)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~----~   98 (319)
                      .-+|++.+.+.++..|....|.        -..|..+.+.|+++.+++++ ...|++    ||+.+...  +..+    .
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRl----yD~~S~np~Pv~t~e~h~k   84 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRL----YDLNSNNPNPVATFEGHTK   84 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEE----EEccCCCCCceeEEeccCC
Confidence            3578899999999999877664        26789999999999877765 568999    88876543  2222    4


Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      .+..+.|..+|+..++++.|+++++||.......+.      ..+...++.+.++|+..-++++..++.|++||+.....
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCcccchh------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence            668899999999999999999999999544333322      23446779999999887788888999999999975321


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g  257 (319)
                            ....     .+.......++++.++|.++++....|..++|+. ..+....+........+...+....++|++
T Consensus       159 ------~~~l-----iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~  227 (311)
T KOG0315|consen  159 ------THEL-----IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV  227 (311)
T ss_pred             ------cccc-----CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence                  1111     1333456788999999999999999999999995 433333332222225666778889999999


Q ss_pred             cEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++++++.|.++++|+.++-+..+...    .++..++++.+|+.||.++++++.|+.+++|
T Consensus       228 k~lat~ssdktv~iwn~~~~~kle~~l----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  228 KYLATCSSDKTVKIWNTDDFFKLELVL----TGHQRWVWDCAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             cEEEeecCCceEEEEecCCceeeEEEe----ecCCceEEeeeeccCccEEEecCCCCceeec
Confidence            999999999999999977653222211    5778899999999999999999999999998

>KOG0284|consensus

Probab=99.96  E-value=4.7e-29  Score=188.56  Aligned_cols=270  Identities=11%  Similarity=0.139  Sum_probs=219.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|..+.|.|.|+.|.+++....|..|...        ..|-..|.++.++++|..++++..+|.|++|.|+.+....-
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            4578888999999999999999999888654        34668899999999999999999999999944433321111


Q ss_pred             eeEEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEE
Q psy13998         93 VFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF  171 (319)
Q Consensus        93 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~  171 (319)
                      ...+...+.+++|+|+...|++++.|++|++|| ...+....+      .+|-..|.++.++|...++++++.|+.|++|
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL------~GHgwdVksvdWHP~kgLiasgskDnlVKlW  249 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLW  249 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee------ccCCCCcceeccCCccceeEEccCCceeEee
Confidence            111335789999999999999999999999999 555555555      5677788999999999999999999999999


Q ss_pred             ecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcce
Q psy13998        172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRG  250 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  250 (319)
                      |.++      |+.+..+      ..|...+.++.|.++++++++.+.|..+++||.. -+.+..+      .+|...+.+
T Consensus       250 DprS------g~cl~tl------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~------r~Hkkdv~~  311 (464)
T KOG0284|consen  250 DPRS------GSCLATL------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY------RGHKKDVTS  311 (464)
T ss_pred             cCCC------cchhhhh------hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh------hcchhhhee
Confidence            9984      3555444      5566778899999999999999999999999976 3334444      567777899


Q ss_pred             EEEcCCC-cEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        251 VAVDDQG-YISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       251 i~~~~~g-~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++|-. .+|++++.|+.|..|... -+.+..++     ..|...+++++++|=|.++++++.|+.+++|
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-----~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw  377 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-----PAHDGEIWSLAYHPLGHILATGSNDRTVRFW  377 (464)
T ss_pred             eccccccccceeeccCCCceEEEeccccccccCCC-----cccccceeeeeccccceeEeecCCCcceeee
Confidence            9999964 699999999999999965 33333333     5688899999999999999999999999998

>KOG0279|consensus

Probab=99.96  E-value=3.8e-27  Score=169.89  Aligned_cols=237  Identities=19%  Similarity=0.360  Sum_probs=191.7

Q ss_pred             cCCCCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEecccccccccee-----eE----EecCceeeEEcCCCcEEEEcCC
Q psy13998         48 RGSEPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCV-----FL----AFTWPRGIAVGPDNSIVVADSS  117 (319)
Q Consensus        48 ~~~~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~----~~~~~~~l~~~~~g~~~~~~~~  117 (319)
                      .+...+|.+.|.++++.+.+ .++++++.|..+.+    |++.....     .+    |-..+.+++.+++|++.++++.
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~----W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIV----WKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEE----EEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence            34567889999999998864 58999999999999    77654321     22    2235688999999999999999


Q ss_pred             CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        118 NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       118 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      |+++++|| ..|+....+      .+|...+.++++++|.+.+++++.|++|.+|+..|.       .......    ..
T Consensus        84 D~~lrlWDl~~g~~t~~f------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-------ck~t~~~----~~  146 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRF------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-------CKYTIHE----DS  146 (315)
T ss_pred             cceEEEEEecCCcEEEEE------EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-------EEEEEec----CC
Confidence            99999999 566777777      678889999999999999999999999999998763       3222221    11


Q ss_pred             CCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCCE-EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        197 QLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRV-ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       197 ~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      +...+.++.|+|+  ..++++++.|+.+++||.++.. ...+      .++....+.++++|||.+.++++.++.+++||
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~------~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc------ccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            2567899999997  5788999999999999987644 4444      67777899999999999999999999999999


Q ss_pred             -CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        274 -PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       274 -~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       .+++.+..+       .+...+.+++|+|+ +++++...+..|+||
T Consensus       221 L~~~k~lysl-------~a~~~v~sl~fspn-rywL~~at~~sIkIw  259 (315)
T KOG0279|consen  221 LNEGKNLYSL-------EAFDIVNSLCFSPN-RYWLCAATATSIKIW  259 (315)
T ss_pred             ccCCceeEec-------cCCCeEeeEEecCC-ceeEeeccCCceEEE
Confidence             467777776       56778999999998 556666666679988

>KOG0286|consensus

Probab=99.96  E-value=1.4e-26  Score=168.08  Aligned_cols=243  Identities=17%  Similarity=0.283  Sum_probs=201.4

Q ss_pred             eecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCC
Q psy13998         44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNH  119 (319)
Q Consensus        44 ~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~  119 (319)
                      .+.......||+..+.++.|++|.+.+++++.||.+.+    ||..|..+...++    .+...+++|.|+.+++++-|+
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv----WDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN  119 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV----WDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN  119 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEE----EEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence            34444566799999999999999999999999999999    8887766666444    456789999999999999999


Q ss_pred             eEEEEcCCCc-------EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC
Q psy13998        120 RVQVFQSDGT-------FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG  192 (319)
Q Consensus       120 ~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  192 (319)
                      ...+|+.+.+       ..+.+      .+|...+.+..|.+ +..+++++.|.+..+||++.      |+.+..|    
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l------~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~------g~~~~~f----  182 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSREL------AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET------GQQTQVF----  182 (343)
T ss_pred             eeEEEecccccccccceeeeee------cCccceeEEEEEcC-CCceEecCCCceEEEEEccc------ceEEEEe----
Confidence            9889984321       12223      56777888888876 56688899999999999984      4556666    


Q ss_pred             CcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEE
Q psy13998        193 NKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ  270 (319)
Q Consensus       193 ~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~  270 (319)
                        .+|...+.++.+.| +++.|++++.|...++|| .++..+..|      .+|..-++.++|.|+|.-|++++.|++.+
T Consensus       183 --~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF------~ghesDINsv~ffP~G~afatGSDD~tcR  254 (343)
T KOG0286|consen  183 --HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF------EGHESDINSVRFFPSGDAFATGSDDATCR  254 (343)
T ss_pred             --cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee------cccccccceEEEccCCCeeeecCCCceeE
Confidence              56777788899999 889999999999999999 577888888      78888899999999999999999999999


Q ss_pred             EEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        271 IFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       271 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|| ..++.+..+..    +.....+++++|+..|++++++..|..+.+|
T Consensus       255 lyDlRaD~~~a~ys~----~~~~~gitSv~FS~SGRlLfagy~d~~c~vW  300 (343)
T KOG0286|consen  255 LYDLRADQELAVYSH----DSIICGITSVAFSKSGRLLFAGYDDFTCNVW  300 (343)
T ss_pred             EEeecCCcEEeeecc----CcccCCceeEEEcccccEEEeeecCCceeEe
Confidence            999 56777777742    3445578999999999999999999999998

>KOG0293|consensus

Probab=99.96  E-value=1.5e-28  Score=186.27  Aligned_cols=267  Identities=13%  Similarity=0.229  Sum_probs=213.0

Q ss_pred             cccccccCCCccchhccccceeeeeccc-----------CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSR-----------GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      .+-|..+.||++|.||++++.+-+..+|           ....||...|..|.|+||.+++++++.+..+..    ||..
T Consensus       224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l----wDv~  299 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL----WDVD  299 (519)
T ss_pred             CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee----ccCC
Confidence            5778999999999999999877654444           334577889999999999999999999999999    9998


Q ss_pred             cceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC
Q psy13998         90 TNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN  164 (319)
Q Consensus        90 ~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~  164 (319)
                      ++.....+     ..+.+.+|.|||..+++++.++.+..|+.+|.....+...     ....+.++++.+||+.+++...
T Consensus       300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv-----r~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV-----RDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-----ccceeEEEEEcCCCcEEEEEec
Confidence            87766533     3678899999999999999999999999999887766321     1245789999999999988889


Q ss_pred             CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcc
Q psy13998        165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEG  243 (319)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~  243 (319)
                      |..|++|+...+...   .    .      .......+++.++.+++++++.-.+..+.+||.. ...++++.  +  ..
T Consensus       375 d~~i~l~~~e~~~dr---~----l------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~--G--hk  437 (519)
T KOG0293|consen  375 DKKIRLYNREARVDR---G----L------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF--G--HK  437 (519)
T ss_pred             ccceeeechhhhhhh---c----c------ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh--c--cc
Confidence            999999988753110   0    1      2233456889999999999999999999999965 33344431  1  11


Q ss_pred             cccCcceEEEcCC-CcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        244 QLKFPRGVAVDDQ-GYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       244 ~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +...+..-||... ..++++++.|+.|++|+ ..|+++..+      .+|...+++++++|... ++++++.||+||||
T Consensus       438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L------sGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL------SGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee------cCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence            2233455566543 37999999999999999 689999999      78999999999999765 99999999999999

>KOG0263|consensus

Probab=99.96  E-value=7.9e-28  Score=195.97  Aligned_cols=230  Identities=14%  Similarity=0.278  Sum_probs=196.5

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeE---------------------------------EecCc
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFL---------------------------------AFTWP  100 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~---------------------------------~~~~~  100 (319)
                      ..+.+..|++++.+++.+..|-.|++    |.+...+  .+.                                 |-..+
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~----~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRV----WSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEE----EecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            56788999999999999999999999    6665211  000                                 22355


Q ss_pred             eeeEEcCCCcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee
Q psy13998        101 RGIAVGPDNSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      .+..|+|+.+++++++.|.++++|..... .+..+      .+|...++.+.|.|-|-+|++++.|++-++|..+..   
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~---  525 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN---  525 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEe------cCCCcceeeEEecCCceEEEecCCCceeeeeecccC---
Confidence            78999999999999999999999995543 34444      678888999999999999999999999999987632   


Q ss_pred             ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                         ..++.+      .+|.....++.|+|+..++++++.|.++++|| .+|..++.|      .+|...+.+++++|+|+
T Consensus       526 ---~PlRif------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF------~GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  526 ---KPLRIF------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF------TGHKGPVTALAFSPCGR  590 (707)
T ss_pred             ---Cchhhh------cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe------cCCCCceEEEEEcCCCc
Confidence               344444      56778889999999999999999999999999 588899999      78888999999999999


Q ss_pred             EEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        259 ISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++++.++.|.+|| ..|+.+..+      .+|...+.+|.|+.||.++|+++.|+.|++|
T Consensus       591 ~LaSg~ed~~I~iWDl~~~~~v~~l------~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  591 YLASGDEDGLIKIWDLANGSLVKQL------KGHTGTIYSLSFSRDGNVLASGGADNSVRLW  646 (707)
T ss_pred             eEeecccCCcEEEEEcCCCcchhhh------hcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence            999999999999999 567888888      6788899999999999999999999999998

>KOG0315|consensus

Probab=99.96  E-value=8.8e-27  Score=165.51  Aligned_cols=273  Identities=12%  Similarity=0.149  Sum_probs=207.9

Q ss_pred             hhhhccchhhhhhhhhh--cccccccCCCccchhcccccee--eeecccCC-------CCCcCCCCcceEEcCCCcEEEE
Q psy13998          4 PSEAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQ--FKIGSRGS-------EPGCFTWPRGIAVGPDNSIVVA   72 (319)
Q Consensus         4 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~--~~~~~~~~-------~~~~~~~~~~v~~~~~g~~~~~   72 (319)
                      +.+.+...+|.|..+..  ...|..+..+|++.+|+.+...  +.+.....       ..+|..++..|.|..+|+.+++
T Consensus        21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyT  100 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYT  100 (311)
T ss_pred             eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEe
Confidence            45567778899998887  6789999999999999887533  22333322       2466789999999999999999


Q ss_pred             eCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCce
Q psy13998         73 DSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~  148 (319)
                      ++.||++++    ||+......+.+   ..++.+.++|+..-++++..++.|++||.... ....+.     +.....+.
T Consensus       101 gseDgt~kI----WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-----Pe~~~~i~  171 (311)
T KOG0315|consen  101 GSEDGTVKI----WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-----PEDDTSIQ  171 (311)
T ss_pred             cCCCceEEE----EeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-----CCCCccee
Confidence            999999999    888765444433   35588999998777777788999999994433 333322     22335678


Q ss_pred             eEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC
Q psy13998        149 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN  228 (319)
Q Consensus       149 ~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~  228 (319)
                      ++++.++|.++++....|..++|++-+.      .....+........+..+.....++|+++++++++.+..+++|+.+
T Consensus       172 sl~v~~dgsml~a~nnkG~cyvW~l~~~------~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGNCYVWRLLNH------QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             eEEEcCCCcEEEEecCCccEEEEEccCC------CccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence            9999999999999999999999998753      2222222222225566677778899999999999999999999988


Q ss_pred             CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEc
Q psy13998        229 GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~  301 (319)
                      +........    .++..+..+.+|+.||+++++++.|+.+++|+ ..++.++.+      .+|...+.+++..
T Consensus       246 ~~~kle~~l----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy------~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  246 DFFKLELVL----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY------QGHHKAAVCVALN  309 (311)
T ss_pred             CceeeEEEe----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec------CCcccccEEEEee
Confidence            763222211    55667899999999999999999999999999 578888888      6787777777653

>KOG0282|consensus

Probab=99.95  E-value=1.9e-27  Score=183.55  Aligned_cols=270  Identities=13%  Similarity=0.192  Sum_probs=215.8

Q ss_pred             cccccccCCCc-cchhccccceeeeecccCC---------CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTP-RSQYLQKRRLQFKIGSRGS---------EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      ..+|.++.|.| .+.++.+++.+.++.+|..         ..||-..|..++|+.+|..|++++.|+.+++    ||.++
T Consensus       214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl----wDtET  289 (503)
T KOG0282|consen  214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL----WDTET  289 (503)
T ss_pred             ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee----ecccc
Confidence            67899999988 7888889999888877743         3577789999999999999999999999999    99999


Q ss_pred             ceeeEEec---CceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         91 NCVFLAFT---WPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        91 ~~~~~~~~---~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      +.....+.   .|.++.+.|++ ++++++..+++|+.|| ..+++++.+      ..|+..+..+.|-++|+.|++.+.+
T Consensus       290 G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY------d~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  290 GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY------DRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH------HhhhhheeeeEEccCCceEeeeccC
Confidence            98887654   68999999998 8999999999999999 788888777      5677888999999999999999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccc-
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ-  244 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-  244 (319)
                      +.+++|+.+...      .+...     .........+++..|++..+++.+.++.|.+|.............-  .++ 
T Consensus       364 ks~riWe~~~~v------~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f--eGh~  430 (503)
T KOG0282|consen  364 KSVRIWENRIPV------PIKNI-----ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF--EGHS  430 (503)
T ss_pred             ccEEEEEcCCCc------cchhh-----cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh--ccee
Confidence            999999876321      11110     0112223346889999999999999999999985432211110000  222 


Q ss_pred             -ccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        245 -LKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       245 -~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                       ...+..+.|+|||.+++++..+|.+.+||. +.+.+..+      ..|...+.++.|.|... .+++++.+|.|++|
T Consensus       431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l------kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL------KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc------ccCCcceEEEEecCCCcceeEecccCceeEec
Confidence             235678999999999999999999999994 45666666      56777889999998754 89999999999998

>KOG0275|consensus

Probab=99.95  E-value=5.4e-27  Score=173.11  Aligned_cols=270  Identities=17%  Similarity=0.249  Sum_probs=224.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCcC----------------CCCcceEEcCCCcEEEEeCCCCeEEEecc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF----------------TWPRGIAVGPDNSIVVADSSNHRVQVCFP   84 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~   84 (319)
                      ...+.+..|||+++||.+++-+..+..|+-..|++                ..+.++.|+.|.+++++++.||.|++   
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv---  289 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV---  289 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE---
Confidence            56788889999999999999999999997776654                67889999999999999999999999   


Q ss_pred             ccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeE
Q psy13998         85 HFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV  158 (319)
Q Consensus        85 ~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~  158 (319)
                       |...++..+..+     ..+.++.|+.|+..+++++.|.++++-- ..|+.++.+      .+|...++...|.++|..
T Consensus       290 -Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf------rGHsSyvn~a~ft~dG~~  362 (508)
T KOG0275|consen  290 -WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF------RGHSSYVNEATFTDDGHH  362 (508)
T ss_pred             -EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh------cCccccccceEEcCCCCe
Confidence             999988887744     4778999999999999999999999988 789988888      788899999999999999


Q ss_pred             EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCC
Q psy13998        159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVITSFGS  237 (319)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~  237 (319)
                      +++++.|++|++|+..+.      .++.++...+    ....++.+..-|.+ ..++++...+.+++.+..|+.++.+..
T Consensus       363 iisaSsDgtvkvW~~Ktt------eC~~Tfk~~~----~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsS  432 (508)
T KOG0275|consen  363 IISASSDGTVKVWHGKTT------ECLSTFKPLG----TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSS  432 (508)
T ss_pred             EEEecCCccEEEecCcch------hhhhhccCCC----CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeecc
Confidence            999999999999998753      4555554322    12234555555654 567777778899999999999999853


Q ss_pred             CCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        238 EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       238 ~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      .....+.   -...+++|.|.++.+-+.|+.++.|+ ..|++.+++      ..|...+-+++-+|..+++++=+.|+.+
T Consensus       433 GkREgGd---Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl------~VhEkdvIGl~HHPHqNllAsYsEDgll  503 (508)
T KOG0275|consen  433 GKREGGD---FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL------PVHEKDVIGLTHHPHQNLLASYSEDGLL  503 (508)
T ss_pred             CCccCCc---eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee------ecccccccccccCcccchhhhhcccchh
Confidence            3222222   24567899999888889999999999 688888888      6788889999999999999999999999


Q ss_pred             EeC
Q psy13998        317 QVF  319 (319)
Q Consensus       317 ~v~  319 (319)
                      ++|
T Consensus       504 KLW  506 (508)
T KOG0275|consen  504 KLW  506 (508)
T ss_pred             hhc
Confidence            998

>KOG0318|consensus

Probab=99.95  E-value=6.4e-25  Score=171.50  Aligned_cols=288  Identities=13%  Similarity=0.166  Sum_probs=208.4

Q ss_pred             cccccccCCCccchh-ccccceeeeeccc--------CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         21 VSGIGQVGTTPRSQY-LQKRRLQFKIGSR--------GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~-l~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      ...+.++.+=|...+ +++++.+..+..+        .....|-..|+++.++|||++|++.+.|+++.+    ||-.++
T Consensus       147 Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i----yDGktg  222 (603)
T KOG0318|consen  147 SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI----YDGKTG  222 (603)
T ss_pred             ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE----EcCCCc
Confidence            345667777665544 6666666554333        334456688999999999999999999999999    999888


Q ss_pred             eeeEEec-------CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCC-------------------------
Q psy13998         92 CVFLAFT-------WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMG-------------------------  138 (319)
Q Consensus        92 ~~~~~~~-------~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~-------------------------  138 (319)
                      +.+..+.       .+.+++|+||+..+++.+.|.++++|| ...++++++....                         
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence            8777554       678999999999999999999999999 5556665543221                         


Q ss_pred             ------------ccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee----------------ec-Cce-----
Q psy13998        139 ------------NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ----------------SD-GTF-----  184 (319)
Q Consensus       139 ------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~----------------~~-~~~-----  184 (319)
                                  ...+|...+++++++++++.+++++.||.|.-|+.......                .. +.+     
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~  382 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW  382 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence                        12467778899999999999999999999999987532100                00 000     


Q ss_pred             ---eeeecccCC--------------------------------------------cCCCCCCceeEEEcCCCcEEEEeC
Q psy13998        185 ---VGKFGSMGN--------------------------------------------KAGQLEHPHYIAVSNTNRVIVSDS  217 (319)
Q Consensus       185 ---~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~g~~~v~~~  217 (319)
                         ++.....+.                                            ...-...+.+++++|++..++.+.
T Consensus       383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG  462 (603)
T KOG0318|consen  383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG  462 (603)
T ss_pred             CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence               000000000                                            000112346788888888888899


Q ss_pred             CCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcce
Q psy13998        218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       218 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      .++.|++|...|.........   ..+...++.++++||+.+++++...+.+.+|+...+....-..    .-|...+.+
T Consensus       463 ~Dgkvhvysl~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w----~FHtakI~~  535 (603)
T KOG0318|consen  463 QDGKVHVYSLSGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW----AFHTAKINC  535 (603)
T ss_pred             ccceEEEEEecCCcccceeee---ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee----eeeeeeEEE
Confidence            999999999876433222111   3466778999999999999999999999999965444322110    237778999


Q ss_pred             EEEccCCcEEEEeCCCCeEEeC
Q psy13998        298 VAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++|+|+..++++++-|-.|.||
T Consensus       536 ~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  536 VAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             EEeCCCceEEEeccccceEEEE
Confidence            9999999999999999999887

>KOG0263|consensus

Probab=99.95  E-value=2.4e-26  Score=187.40  Aligned_cols=226  Identities=16%  Similarity=0.281  Sum_probs=189.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCC---------------------------------------CCCcCCCCcce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS---------------------------------------EPGCFTWPRGI   61 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~v   61 (319)
                      ..++.++.|++++.+++-+..+-.+..|..                                       ..||-..|.+.
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            356788889999988776643332222211                                       13566889999


Q ss_pred             EEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecC
Q psy13998         62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGS  136 (319)
Q Consensus        62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~  136 (319)
                      .|+|+.+++++++.|.++++    |.+.+......+    ..+..+.|+|-|-+|++++.|++.++|. ....+++.+  
T Consensus       458 sFsPd~rfLlScSED~svRL----Wsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif--  531 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRL----WSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF--  531 (707)
T ss_pred             eecccccceeeccCCcceee----eecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh--
Confidence            99999999999999999999    999877666533    3557799999999999999999999999 445666666  


Q ss_pred             CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998        137 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  216 (319)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  216 (319)
                          .+|...+.++.|+|+.+++++++.|.++++||..      .|..++.|      .+|...+.+++++|+|++++++
T Consensus       532 ----aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~------~G~~VRiF------~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  532 ----AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS------TGNSVRIF------TGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             ----cccccccceEEECCcccccccCCCCceEEEEEcC------CCcEEEEe------cCCCCceEEEEEcCCCceEeec
Confidence                7888999999999999999999999999999987      34667777      5688889999999999999999


Q ss_pred             CCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        217 SNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       217 ~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ..++.|.+||. .|..+..+      .+|...+.++.|+.+|.++++++.|+.|++||.
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l------~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQL------KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhh------hcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            99999999995 56777777      667778899999999999999999999999993

>KOG0285|consensus

Probab=99.95  E-value=4e-26  Score=170.29  Aligned_cols=239  Identities=19%  Similarity=0.384  Sum_probs=198.9

Q ss_pred             ecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCe
Q psy13998         45 IGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        45 ~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      ++......||+.++.+|+++|.++.|++++.|+++.+    ||+.++.....+    ..+.++++++-.-++++++.++.
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikI----wDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~  216 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKI----WDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ  216 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEE----EEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence            4445566899999999999999999999999999999    999988776644    46789999987788999999999


Q ss_pred             EEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        121 VQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       121 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      |+.|| ...+.++.+      .+|+..+.+++++|.-.++++++.|..+++||++++      ..+..+      .+|..
T Consensus       217 VKCwDLe~nkvIR~Y------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr------~~V~~l------~GH~~  278 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHY------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR------ASVHVL------SGHTN  278 (460)
T ss_pred             eEEEechhhhhHHHh------ccccceeEEEeccccceeEEecCCcceEEEeeeccc------ceEEEe------cCCCC
Confidence            99999 677778777      789999999999999999999999999999999865      223333      45566


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCc
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQ  277 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~  277 (319)
                      .+..+.+.|.+--+++++.|..|++|| ..|+....+      ..+...+.+++..|....|++++. +.|..|+ +.|.
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl------t~hkksvral~lhP~e~~fASas~-dnik~w~~p~g~  351 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL------THHKKSVRALCLHPKENLFASASP-DNIKQWKLPEGE  351 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeeccCceeEee------ecccceeeEEecCCchhhhhccCC-ccceeccCCccc
Confidence            667777777666788999999999999 467776666      455667889999999888877765 5799999 7898


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+..+      .+|...++.++...| .++++++.++.|..|
T Consensus       352 f~~nl------sgh~~iintl~~nsD-~v~~~G~dng~~~fw  386 (460)
T KOG0285|consen  352 FLQNL------SGHNAIINTLSVNSD-GVLVSGGDNGSIMFW  386 (460)
T ss_pred             hhhcc------ccccceeeeeeeccC-ceEEEcCCceEEEEE
Confidence            88887      678888999999887 468888899988876

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.9e-24  Score=170.48  Aligned_cols=265  Identities=18%  Similarity=0.370  Sum_probs=205.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.++.++|++.++..+..+..+..|....        ++...+..+.+.++++.+++++.++.|++    |+..+..
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i----~~~~~~~   84 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL----WDLETGE   84 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE----EEcCccc
Confidence            57789999999999988887676666665432        33455668999999999999999999999    8886544


Q ss_pred             eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      ....+    ..+.++.+++++++++++..++.+.+|+.. ++....+      ..+...+.++++++++.+++++..++.
T Consensus        85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL------RGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe------ccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            43332    257889999998888888879999999954 6666665      234457899999999888888887999


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCccccc
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~  246 (319)
                      +.+||+...      +.+..+      ..+...+.+++++++++.+++++.++.|.+||.. ++.+..+      ..+..
T Consensus       159 i~i~d~~~~------~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~------~~~~~  220 (289)
T cd00200         159 IKLWDLRTG------KCVATL------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL------RGHEN  220 (289)
T ss_pred             EEEEEcccc------ccceeE------ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch------hhcCC
Confidence            999998732      333333      1233457889999999777777779999999975 4555544      23444


Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+.++++++++.++++++.++.|++|+.. ++.+..+      ..+...+.+++++++++++++++.|+.|++|
T Consensus       221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL------SGHTNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc------cccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence            68899999998898888889999999954 6666666      4566679999999999999999999999998

>KOG0273|consensus

Probab=99.95  E-value=7.8e-25  Score=168.78  Aligned_cols=264  Identities=11%  Similarity=0.116  Sum_probs=206.6

Q ss_pred             cccccccCCCccch-hccccceeeeecccCCCC----------------------CcCCCCcceEEcCCCcEEEEeCCCC
Q psy13998         21 VSGIGQVGTTPRSQ-YLQKRRLQFKIGSRGSEP----------------------GCFTWPRGIAVGPDNSIVVADSSNH   77 (319)
Q Consensus        21 ~~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~~~----------------------~~~~~~~~v~~~~~g~~~~~~~~~~   77 (319)
                      +..|...+|.|... .|+.++.+..+..|....                      ..-..+++++|+.+|.++++++.+|
T Consensus       178 ~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G  257 (524)
T KOG0273|consen  178 ESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDG  257 (524)
T ss_pred             CCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCc
Confidence            45678888999887 788887777766664432                      1125789999999999999999999


Q ss_pred             eEEEeccccccccceee---EEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998         78 RVQVCFPHFDLKTNCVF---LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS  153 (319)
Q Consensus        78 ~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (319)
                      .+++    |+.......   .|...+.++.++..|+++++++.|+++.+|| ..|.....+.      .+.....++.|-
T Consensus       258 ~~ri----w~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~------~~s~~~lDVdW~  327 (524)
T KOG0273|consen  258 EARI----WNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE------FHSAPALDVDWQ  327 (524)
T ss_pred             EEEE----EecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee------eccCCccceEEe
Confidence            9999    877532211   1444678999999999999999999999999 6777666663      222222445555


Q ss_pred             CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEE
Q psy13998        154 NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVI  232 (319)
Q Consensus       154 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~  232 (319)
                      . ..-|++.+.++.|.++.+...      .++.++      .+|...+.+|.++|.|.++.+++.|+++++|+. ++...
T Consensus       328 ~-~~~F~ts~td~~i~V~kv~~~------~P~~t~------~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  328 S-NDEFATSSTDGCIHVCKVGED------RPVKTF------IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             c-CceEeecCCCceEEEEEecCC------Ccceee------ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence            4 455788888999999988753      344444      456778899999999999999999999999995 55555


Q ss_pred             EEeCCCCCCcccccCcceEEEcCCC---------cEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        233 TSFGSEGSEEGQLKFPRGVAVDDQG---------YISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~~~~g---------~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      ..+      ..|...+..+.++|+|         ..+++.+.++.|++|| ..|..+..+      ..|...+.+++|+|
T Consensus       395 ~~l------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f------~kH~~pVysvafS~  462 (524)
T KOG0273|consen  395 HDL------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL------MKHQEPVYSVAFSP  462 (524)
T ss_pred             hhh------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee------ccCCCceEEEEecC
Confidence            555      5566667777777753         4788889999999999 678899888      67888999999999


Q ss_pred             CCcEEEEeCCCCeEEeC
Q psy13998        303 NGNILVCDRENHRIQVF  319 (319)
Q Consensus       303 ~g~~~v~~~~~~~i~v~  319 (319)
                      +|+++++++.|+.|.+|
T Consensus       463 ~g~ylAsGs~dg~V~iw  479 (524)
T KOG0273|consen  463 NGRYLASGSLDGCVHIW  479 (524)
T ss_pred             CCcEEEecCCCCeeEec
Confidence            99999999999999998

>KOG0292|consensus

Probab=99.95  E-value=3.1e-25  Score=183.44  Aligned_cols=277  Identities=15%  Similarity=0.236  Sum_probs=225.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      .+++..++|+|...+..++-....++.|+..        ..|-..|.+|+|.|.+.+||+++.|-.|++    |+..+..
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkV----WnYk~rr   84 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKV----WNYKTRR   84 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEE----Eecccce
Confidence            5788999999999999998888888888654        456688999999999999999999999999    8887666


Q ss_pred             eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      .+.    |++.+..+.|++.--++++++.|.+|++|+ .+++.+..+      .+|.+.+.+..|+|...++++++-|.+
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl------tGHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL------TGHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE------ecCceEEEeeccCCccceEEEecccce
Confidence            544    778899999999888999999999999999 888888888      688999999999999999999999999


Q ss_pred             EEEEecCCceee--ecCceeee----------ec-----ccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC
Q psy13998        168 VQIFDVNGRVFQ--SDGTFVGK----------FG-----SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR  230 (319)
Q Consensus       168 i~~~~~~~~~~~--~~~~~~~~----------~~-----~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~  230 (319)
                      |++||+.|..-.  ..+.+...          ++     ......+|...++..+|+|.-.++++++.|..|++|..+..
T Consensus       159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence            999999874211  11100000          00     01113566677888999999999999999999999997765


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                      ........   .+|.+.+.++-|+|..+++++.+.|+.|++||.+. +.++++      .....+-|-++.+|..++|++
T Consensus       239 KaWEvDtc---rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf------rrendRFW~laahP~lNLfAA  309 (1202)
T KOG0292|consen  239 KAWEVDTC---RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF------RRENDRFWILAAHPELNLFAA  309 (1202)
T ss_pred             cceeehhh---hcccCCcceEEecCccceeEecCCCccEEEEecccccceeee------eccCCeEEEEEecCCcceeee
Confidence            55554322   57889999999999999999999999999999543 456666      344567889999999999999


Q ss_pred             eCCCCeE
Q psy13998        310 DRENHRI  316 (319)
Q Consensus       310 ~~~~~~i  316 (319)
                      +..+|.+
T Consensus       310 gHDsGm~  316 (1202)
T KOG0292|consen  310 GHDSGMI  316 (1202)
T ss_pred             ecCCceE
Confidence            8877754

>KOG0285|consensus

Probab=99.95  E-value=1.4e-25  Score=167.44  Aligned_cols=268  Identities=14%  Similarity=0.256  Sum_probs=216.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ..=|.++++.|-+.++.+++.+.++++|+...|        |...+.++++++.-.++++++.|+.|+-    ||++.++
T Consensus       151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC----wDLe~nk  226 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC----WDLEYNK  226 (460)
T ss_pred             cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE----Eechhhh
Confidence            455889999999999999999999999987754        5688999999998889999999999999    9998777


Q ss_pred             eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      .+.    |+..+.+++++|.-+++++++.|..+++||. ....+..+      .+|...+..+.+.+.+-.+++++.|.+
T Consensus       227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l------~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL------SGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe------cCCCCcceeEEeecCCCceEEecCCce
Confidence            766    6778999999999999999999999999994 44456666      678788888988886667889999999


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCccccc
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~  246 (319)
                      |++||+..      |+.....      ..+.....+++.+|...+|++++.| .|..|+ +.|..+..+      .++..
T Consensus       301 vrlWDl~a------gkt~~tl------t~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl------sgh~~  361 (460)
T KOG0285|consen  301 VRLWDLRA------GKTMITL------THHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL------SGHNA  361 (460)
T ss_pred             EEEeeecc------CceeEee------ecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc------ccccc
Confidence            99999873      3433333      3455667889999988888887754 689999 678877776      66667


Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEe---ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRA---FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~---~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++.+....| .++++++.++.+..|| .+|...+.   +..++.. .....+.+.+|+..|..++++..|..|++|
T Consensus       362 iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl-~sEagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  362 IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL-ESEAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             eeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCcc-ccccceeEEeecccCceEEeccCCcceEEE
Confidence            7888998877 4788999999999999 45533332   3233322 234567889999999999999999999987

>KOG0296|consensus

Probab=99.95  E-value=4.8e-25  Score=164.74  Aligned_cols=276  Identities=12%  Similarity=0.117  Sum_probs=209.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCC--------CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS--------EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      .+.+-+++.+|+..+.+++..+-+.-.|..        ..||.+.|.++.|+.+|.+++++.-+|.|++    |...++.
T Consensus        64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v----~~~stg~  139 (399)
T KOG0296|consen   64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV----FKVSTGG  139 (399)
T ss_pred             CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE----EEcccCc
Confidence            788999999999999999988877666643        3567899999999999999999999999999    9988877


Q ss_pred             eeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      ....+.    .+.-+.++|.+.++++++.++.+.+|. +++...+.+      .+|...+++=.|.|+|+.++++..+++
T Consensus       140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~------~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM------SGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe------cCCCCCcccccccCCCceEEEEecCce
Confidence            766553    456688999999999999999999999 555667767      567677778889999999999999999


Q ss_pred             EEEEecCCce-e-ee-----------------------------------cCceeeeecc--cCCcCCCCCCceeEE---
Q psy13998        168 VQIFDVNGRV-F-QS-----------------------------------DGTFVGKFGS--MGNKAGQLEHPHYIA---  205 (319)
Q Consensus       168 i~~~~~~~~~-~-~~-----------------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~---  205 (319)
                      |++|++.+.. + ..                                   .|+++.....  ....+.+.....++.   
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            9999986421 0 00                                   0011111000  000001111112222   


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      ++..=.+.++++.+|+|.+||.....++..      -.+...+..+.|.+ ..+++++..++.|+.|| +.|+.+..+  
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~------c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y--  364 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHI------CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY--  364 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhhee------ccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE--
Confidence            233335677788899999999765444444      34555688899988 46777888899999999 789999999  


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                          .+|...+..++++|+++++++.+.|+..+||
T Consensus       365 ----~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  365 ----TGHQMGILDFALSPQKRLVVTVSDDNTALVF  395 (399)
T ss_pred             ----ecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence                7899999999999999999999999999987

>KOG0291|consensus

Probab=99.94  E-value=1.6e-24  Score=176.22  Aligned_cols=264  Identities=12%  Similarity=0.180  Sum_probs=206.5

Q ss_pred             ccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeC-CCCeEEEeccccccccce
Q psy13998         22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADS-SNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~-~~~~v~~~~~~~~~~~~~   92 (319)
                      ..+.+++|++.-..|+++.....+..+....-        ....+..++++..|..++.++ .-|.+.+    |+.++..
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV----weWqsEs  341 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV----WEWQSES  341 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE----EEeeccc
Confidence            56788889999999998876666655433211        124567788888888766655 4478999    6665554


Q ss_pred             eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      .+.    |+....+++++|||+++++++.|++|++|| ..|-...++      ..|...+.++.|+..|+.+++.+-||+
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF------teHts~Vt~v~f~~~g~~llssSLDGt  415 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF------TEHTSGVTAVQFTARGNVLLSSSLDGT  415 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe------ccCCCceEEEEEEecCCEEEEeecCCe
Confidence            443    567889999999999999999999999999 677777778      567788999999999999999999999


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC-CeEEEEeC-CCCEEEEeCCCCCCcccc
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-HRVQIFDV-NGRVITSFGSEGSEEGQL  245 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~i~~~~~-~~~~~~~~~~~~~~~~~~  245 (319)
                      |+.||+...      +-.+++.     ......-.+++++|.|.+++++..+ -.|++|+. +|+.+-.+      .+|.
T Consensus       416 VRAwDlkRY------rNfRTft-----~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL------sGHE  478 (893)
T KOG0291|consen  416 VRAWDLKRY------RNFRTFT-----SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL------SGHE  478 (893)
T ss_pred             EEeeeeccc------ceeeeec-----CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh------cCCC
Confidence            999998732      2222222     1122345789999999998888765 57999995 78888777      7888


Q ss_pred             cCcceEEEcCCCcEEEEeCCCCEEEEEcC--CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNRIQIFTP--DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+.+++|+|+|..+++++.|.+|++|+.  ....+.++       .....+.+++|.|||+-+++..-||.|.+|
T Consensus       479 gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-------~i~sdvl~vsfrPdG~elaVaTldgqItf~  547 (893)
T KOG0291|consen  479 GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-------EIRSDVLAVSFRPDGKELAVATLDGQITFF  547 (893)
T ss_pred             CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-------eeccceeEEEEcCCCCeEEEEEecceEEEE
Confidence            88999999999999999999999999993  22234444       344568999999999999999999999987

>KOG0266|consensus

Probab=99.94  E-value=1.2e-24  Score=180.33  Aligned_cols=272  Identities=15%  Similarity=0.286  Sum_probs=211.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCC----------CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS----------EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      ...+..+.|++++..+.....+..+..|+.          ..+|...+.+++|+|+|+++++++.|.++++    |+...
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri----wd~~~  234 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI----WDLKD  234 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE----eeccC
Confidence            456778899999999888877766555544          2567788999999999999999999999999    88843


Q ss_pred             c-eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC
Q psy13998         91 N-CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN  164 (319)
Q Consensus        91 ~-~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~  164 (319)
                      . ....    |...+.+++|+|+++++++++.|++|++|| ..++....+      .+|...+.++++.++++++++++.
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l------~~hs~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL------KGHSDGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee------eccCCceEEEEECCCCCEEEEcCC
Confidence            3 3333    445779999999999999999999999999 567888888      677788999999999999999999


Q ss_pred             CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcc
Q psy13998        165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEG  243 (319)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~  243 (319)
                      |+.|++||..+....    +...+..   ..... ....+.++|++.++++...++.+.+|+.. +..+..+......  
T Consensus       309 d~~i~vwd~~~~~~~----~~~~~~~---~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--  378 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKL----CLKLLSG---AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--  378 (456)
T ss_pred             CccEEEEECCCCcee----eeecccC---CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--
Confidence            999999999864311    1122111   01111 35789999999999999999999999965 6666665222111  


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCC-CCCcceEEEccCCcEEEEeC--CCCeEEeC
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGE-FKGLEGVAVMSNGNILVCDR--ENHRIQVF  319 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~l~~~~~g~~~v~~~--~~~~i~v~  319 (319)
                       ...+......+.+.++++++.++.|++|+.. +..+..+      .+| ...+..+.+++..+++++.+  .|+.|++|
T Consensus       379 -~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l------~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  379 -VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL------EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW  451 (456)
T ss_pred             -ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh------cCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence             1123344456788999999999999999964 6666666      566 67778899999999999988  78899988

>KOG0291|consensus

Probab=99.94  E-value=8.9e-25  Score=177.66  Aligned_cols=278  Identities=13%  Similarity=0.212  Sum_probs=210.0

Q ss_pred             hhhhhhh--cccccccCCCccchhcccccee-eeecccC--------CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEe
Q psy13998         14 FLLQTLL--VSGIGQVGTTPRSQYLQKRRLQ-FKIGSRG--------SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC   82 (319)
Q Consensus        14 ~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~--------~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~   82 (319)
                      .+++.+.  ...|..++++..|.+++-+... ..+..|.        .+.||+..+.+++++|||.++++++.|+.|++ 
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv-  376 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV-  376 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE-
Confidence            3444444  3567888888888887765432 3333332        24689999999999999999999999999999 


Q ss_pred             ccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCe
Q psy13998         83 FPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  157 (319)
Q Consensus        83 ~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  157 (319)
                         ||..++-++..+.    .+.++.|+..|+.+++.+-||+|+.|| ...+..+++..+..     ....+++++|.|.
T Consensus       377 ---Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p-----~QfscvavD~sGe  448 (893)
T KOG0291|consen  377 ---WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDPSGE  448 (893)
T ss_pred             ---EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc-----eeeeEEEEcCCCC
Confidence               9998877777654    568899999999999999999999999 56676777754421     2347899999999


Q ss_pred             EEEEeCCCC-EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CC-CEEEE
Q psy13998        158 VIVSDSNNH-RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NG-RVITS  234 (319)
Q Consensus       158 ~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~-~~~~~  234 (319)
                      +++++..+. .|.+|+..+      |+++..+      .+|...+.+++++|.+..+++++.|.+|++||. +. ..+..
T Consensus       449 lV~AG~~d~F~IfvWS~qT------GqllDiL------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt  516 (893)
T KOG0291|consen  449 LVCAGAQDSFEIFVWSVQT------GQLLDIL------SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET  516 (893)
T ss_pred             EEEeeccceEEEEEEEeec------Ceeeehh------cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence            988887664 699999874      4555554      567778899999999999999999999999995 22 23333


Q ss_pred             eCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccC--------------CCCCCCCCcceEE
Q psy13998        235 FGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWG--------------SGDGEFKGLEGVA  299 (319)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~--------------~~~~~~~~~~~l~  299 (319)
                      +       .....+.+++|.|+|+-+++...+|.|.+||. ++..+..+....              .........+.|+
T Consensus       517 l-------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~  589 (893)
T KOG0291|consen  517 L-------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC  589 (893)
T ss_pred             E-------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence            3       22345788999999998888899999999994 343333332110              0011234578899


Q ss_pred             EccCCcEEEEeCCCCeEEeC
Q psy13998        300 VMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       300 ~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++||.++++++..+.|.+|
T Consensus       590 ySaDG~~IlAgG~sn~iCiY  609 (893)
T KOG0291|consen  590 YSADGKCILAGGESNSICIY  609 (893)
T ss_pred             EcCCCCEEEecCCcccEEEE
Confidence            99999999999999988775

>KOG0295|consensus

Probab=99.94  E-value=2.2e-24  Score=161.16  Aligned_cols=265  Identities=16%  Similarity=0.230  Sum_probs=209.6

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-   91 (319)
                      ...|..+-+.|.-.+..+.+.+.+++.|+..        .||.+.+..|+|+..|+++++++.|=.+..    |+.++. 
T Consensus       108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L----Wd~~~~~  183 (406)
T KOG0295|consen  108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL----WDFDTFF  183 (406)
T ss_pred             ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh----eeHHHHH
Confidence            3456777788888888888788888777655        467788999999999999999999988999    777542 


Q ss_pred             eee----EEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC
Q psy13998         92 CVF----LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH  166 (319)
Q Consensus        92 ~~~----~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~  166 (319)
                      ...    .+-..+.++++-|.|..+++++.|.+|+.|+ .+|-.+..+      .+|...+.-+.+..||.++.+++.+.
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~------~~h~ewvr~v~v~~DGti~As~s~dq  257 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF------PGHSEWVRMVRVNQDGTIIASCSNDQ  257 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec------cCchHhEEEEEecCCeeEEEecCCCc
Confidence            111    1333668899999999999999999999999 677778888      56667888899999999999999999


Q ss_pred             EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC---------------CCcEEEEeCCCCeEEEEeC-CCC
Q psy13998        167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN---------------TNRVIVSDSNNHRVQIFDV-NGR  230 (319)
Q Consensus       167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~g~~~v~~~~~~~i~~~~~-~~~  230 (319)
                      ++++|-..++...      ..+      ..+.....++++-|               .+.++.+++.|+.|++||. .|.
T Consensus       258 tl~vW~~~t~~~k------~~l------R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~  325 (406)
T KOG0295|consen  258 TLRVWVVATKQCK------AEL------REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM  325 (406)
T ss_pred             eEEEEEeccchhh------hhh------hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence            9999987754111      000      00111111111111               2368889999999999995 788


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                      .+.++      .++.+++.+++|+|.|++++++..|+++++|| .+++..+.+      ..|...++++.|+.+--++++
T Consensus       326 cL~tL------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~------~ah~hfvt~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  326 CLFTL------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL------EAHEHFVTSLDFHKTAPYVVT  393 (406)
T ss_pred             EEEEE------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc------CCCcceeEEEecCCCCceEEe
Confidence            88888      78999999999999999999999999999999 466667776      567788999999988779999


Q ss_pred             eCCCCeEEeC
Q psy13998        310 DRENHRIQVF  319 (319)
Q Consensus       310 ~~~~~~i~v~  319 (319)
                      |+-|..+++|
T Consensus       394 GsVdqt~Kvw  403 (406)
T KOG0295|consen  394 GSVDQTVKVW  403 (406)
T ss_pred             ccccceeeee
Confidence            9999999998

>KOG0273|consensus

Probab=99.93  E-value=3.6e-23  Score=159.68  Aligned_cols=262  Identities=15%  Similarity=0.155  Sum_probs=206.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC-------CcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      +..|.+++|+-+|..|+++..+..+.+|....       -|...+.+|.++..|+++++++.|+++.+    ||..++..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttil----wd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL----WDAHTGTV  310 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEE----EeccCceE
Confidence            46789999999999999999998888886543       24578899999999999999999999999    99977766


Q ss_pred             eEEec---Cc-eeeEEcCCCcEEEEcCCCCeEEEEcCCC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEE
Q psy13998         94 FLAFT---WP-RGIAVGPDNSIVVADSSNHRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV  168 (319)
Q Consensus        94 ~~~~~---~~-~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i  168 (319)
                      ..++.   .| .++.|-. ..-|++.+.++.|+++-.++ .++.++      .+|...+.++.++|.|.++.+++.|+++
T Consensus       311 ~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~------~GH~g~V~alk~n~tg~LLaS~SdD~Tl  383 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTF------IGHHGEVNALKWNPTGSLLASCSDDGTL  383 (524)
T ss_pred             EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceee------ecccCceEEEEECCCCceEEEecCCCee
Confidence            65544   33 4455543 35678888899999998443 455666      5688899999999999999999999999


Q ss_pred             EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---------CcEEEEeCCCCeEEEEeC-CCCEEEEeCCC
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---------NRVIVSDSNNHRVQIFDV-NGRVITSFGSE  238 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~  238 (319)
                      ++|+....      .....+      ..|...+..+.++|.         +..+++.+.++.|++||. .|..+..+   
T Consensus       384 kiWs~~~~------~~~~~l------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f---  448 (524)
T KOG0273|consen  384 KIWSMGQS------NSVHDL------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL---  448 (524)
T ss_pred             EeeecCCC------cchhhh------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---
Confidence            99997532      111111      223333444445443         346788888999999994 78888888   


Q ss_pred             CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       239 ~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                         ..|...+.+++|+|+|+++++++.++.|.+|+ +.+++++.+.       ....+..++|+.+|..+.+...++.+.
T Consensus       449 ---~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~~~~Ifel~Wn~~G~kl~~~~sd~~vc  518 (524)
T KOG0273|consen  449 ---MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------GTGGIFELCWNAAGDKLGACASDGSVC  518 (524)
T ss_pred             ---ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------CCCeEEEEEEcCCCCEEEEEecCCCce
Confidence               66777899999999999999999999999999 6888888873       344689999999999888888888765


Q ss_pred             e
Q psy13998        318 V  318 (319)
Q Consensus       318 v  318 (319)
                      +
T Consensus       519 v  519 (524)
T KOG0273|consen  519 V  519 (524)
T ss_pred             E
Confidence            4

>KOG0265|consensus

Probab=99.93  E-value=1.4e-23  Score=153.15  Aligned_cols=267  Identities=12%  Similarity=0.161  Sum_probs=208.8

Q ss_pred             cccccccCCCccchhccccceeeeecccCC---------CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS---------EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      ...|..+.|+|++..++++..+..+-.|..         ..||-..|.++.+.+|++.+++++.|.+|+.    ||.+++
T Consensus        47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~----wD~~tG  122 (338)
T KOG0265|consen   47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG----WDAETG  122 (338)
T ss_pred             cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE----Eecccc
Confidence            677889999999999999999988877752         2578899999999999999999999999999    999998


Q ss_pred             eeeEEec----CceeeEEcCCC-cEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         92 CVFLAFT----WPRGIAVGPDN-SIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        92 ~~~~~~~----~~~~l~~~~~g-~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      +....+.    .++.+....-| .++.+++.|+++++||. ....++.+.       .....+++.|..++.-.+++.-|
T Consensus       123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------NKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------cceeEEEEEecccccceeecccc
Confidence            8877443    44555533334 47778889999999994 334444442       12456889999888889999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC----CCE-EEEeCCCCC
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN----GRV-ITSFGSEGS  240 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~----~~~-~~~~~~~~~  240 (319)
                      +.|++||++..      ......      .++...+.+|..+++|..+.+.+.++.+++||..    ++. +..+..  .
T Consensus       196 n~ikvWd~r~~------d~~~~l------sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g--~  261 (338)
T KOG0265|consen  196 NDIKVWDLRKN------DGLYTL------SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG--H  261 (338)
T ss_pred             CceeeeccccC------cceEEe------ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec--c
Confidence            99999999632      233333      5667788999999999999999999999999943    332 444411  1


Q ss_pred             CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        241 EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ...........+++|+++..-+++.|..+++||... ..+..+      ++|...++.++|.|...++.+++.|.+|.+
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl------pGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL------PGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc------CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            112223345678999999999999999999999766 555666      789999999999999999999999998864

>KOG1446|consensus

Probab=99.93  E-value=9.7e-23  Score=149.90  Aligned_cols=235  Identities=11%  Similarity=0.197  Sum_probs=180.3

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcC--CCCeEEEEc-CC
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADS--SNHRVQVFQ-SD  127 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~--~~~~i~~~~-~~  127 (319)
                      -..+.+|.|+++|.++++++.|..+++    |+..++.....+.    .+..+.|....+.++.++  .|..|+..+ .+
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~L----Yd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRL----YDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEE----EEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence            357899999999999999999999999    9988776665443    455666665544333333  478999999 67


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      .+.++.+      .+|...+..|+++|-+..|++++.|++|++||++..      +....+        ....+...|++
T Consensus        90 NkylRYF------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~------~cqg~l--------~~~~~pi~AfD  149 (311)
T KOG1446|consen   90 NKYLRYF------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK------KCQGLL--------NLSGRPIAAFD  149 (311)
T ss_pred             CceEEEc------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC------CCceEE--------ecCCCcceeEC
Confidence            8888888      789999999999998899999999999999999843      222211        12334458999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCC---CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeec
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFG  283 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~  283 (319)
                      |+|-+++++.....|.+||..   ..+...+...   .+.......|.|+|+|+.++.+...+.++++| .+|.++..+.
T Consensus       150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~---~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT---DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             CCCcEEEEecCCCeEEEEEecccCCCCceeEccC---CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence            999999999888899999953   3344444222   13345578999999999888888889999999 6898888774


Q ss_pred             ccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..   ......+-+.++.||++++++++.|++|.+|
T Consensus       227 ~~---~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw  259 (311)
T KOG1446|consen  227 GY---PNAGNLPLSATFTPDSKFVLSGSDDGTIHVW  259 (311)
T ss_pred             ec---cCCCCcceeEEECCCCcEEEEecCCCcEEEE
Confidence            32   1223345678899999999999999999998

>KOG0266|consensus

Probab=99.93  E-value=3.8e-23  Score=171.38  Aligned_cols=233  Identities=18%  Similarity=0.296  Sum_probs=186.2

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-C
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-D  127 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~  127 (319)
                      ...+.++.|+++|+.+++++.++.+++    |+..+..  ...    +...+.+++|+++++++++++.|++|++||. .
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~----~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRI----WKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEE----eecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence            567788999999999999999999999    6663333  222    4457789999999999999999999999994 4


Q ss_pred             C-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        128 G-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       128 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      . ..++.+      .+|...+++++|+|+++++++++.|+.|++||+++      ++++..+      ..|.....++++
T Consensus       235 ~~~~~~~l------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~------~~~~~~l------~~hs~~is~~~f  296 (456)
T KOG0266|consen  235 DGRNLKTL------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT------GECVRKL------KGHSDGISGLAF  296 (456)
T ss_pred             CCeEEEEe------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC------CeEEEee------eccCCceEEEEE
Confidence            4 677777      68888999999999999999999999999999985      3555555      566678899999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCCCCE---EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEee
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVNGRV---ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAF  282 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~  282 (319)
                      +++++++++++.++.|++||.....   ...+...   .... ....++++|++.++++...++.+.+|+.. +..+..+
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---ENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCceeeeecccCC---CCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            9999999999999999999975444   2333111   1111 46889999999999999999999999954 7776666


Q ss_pred             cccCCCCCCCC---CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFK---GLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~---~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                            .++..   .+.+....++|.++++++.|+.|++|
T Consensus       373 ------~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~  406 (456)
T KOG0266|consen  373 ------TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVW  406 (456)
T ss_pred             ------cccCCcceeEecccccCCCCeEEEEeCCceEEEE
Confidence                  33333   34445557889999999999999988

>KOG0318|consensus

Probab=99.93  E-value=6e-23  Score=160.63  Aligned_cols=274  Identities=14%  Similarity=0.192  Sum_probs=197.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCC-----------CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS-----------EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      ...|.++-++|++...++.+.+.++-+++-           ..+|...+.+|+|+||++.+++.+.|.++++    |+..
T Consensus       190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI----WdVs  265 (603)
T KOG0318|consen  190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI----WDVS  265 (603)
T ss_pred             ccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE----EEee
Confidence            457899999999999999888777554432           3467788999999999999999999999999    7776


Q ss_pred             cceeeE-----------------------------------------------EecCceeeEEcCCCcEEEEcCCCCeEE
Q psy13998         90 TNCVFL-----------------------------------------------AFTWPRGIAVGPDNSIVVADSSNHRVQ  122 (319)
Q Consensus        90 ~~~~~~-----------------------------------------------~~~~~~~l~~~~~g~~~~~~~~~~~i~  122 (319)
                      +.....                                               |...+++++++++++.+++++.+|.|.
T Consensus       266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~  345 (603)
T KOG0318|consen  266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN  345 (603)
T ss_pred             ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence            554433                                               223567899999999999999999999


Q ss_pred             EEcC-CCc-----------EEEEecCCC--------------------c--c-C---C----------------------
Q psy13998        123 VFQS-DGT-----------FVGKFGSMG--------------------N--K-A---G----------------------  142 (319)
Q Consensus       123 ~~~~-~~~-----------~~~~~~~~~--------------------~--~-~---~----------------------  142 (319)
                      .|+. .|.           ++..+....                    .  . .   .                      
T Consensus       346 ~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~  425 (603)
T KOG0318|consen  346 SWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI  425 (603)
T ss_pred             EEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence            9982 221           111111000                    0  0 0   0                      


Q ss_pred             ----------------CCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        143 ----------------QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       143 ----------------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                                      ....+.+++++|++..++.++.|+.+.+|.+.|..+.....          ...+...++.+++
T Consensus       426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~----------~~~h~a~iT~vay  495 (603)
T KOG0318|consen  426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK----------LLEHRAAITDVAY  495 (603)
T ss_pred             CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee----------eecccCCceEEEE
Confidence                            01123556666777777777777777777776643221111          1345667899999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--CceEEeecc
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQFLRAFGC  284 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~~~~~~~  284 (319)
                      +|++.+++++...+.+.+||........-. -   .-|...+.+++|+|+..++++++.|-.|.+|+.+  .+.+...  
T Consensus       496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~-w---~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik--  569 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRKVVLYDVASREVKTNR-W---AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK--  569 (603)
T ss_pred             CCCCcEEEEeccCCcEEEEEcccCceecce-e---eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec--
Confidence            999999999999999999997654442210 0   2256678999999999999999999999999943  3333333  


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                          ..|...++.++|-.+ .-+++.++|..|++|
T Consensus       570 ----nAH~~gVn~v~wlde-~tvvSsG~Da~iK~W  599 (603)
T KOG0318|consen  570 ----NAHLGGVNSVAWLDE-STVVSSGQDANIKVW  599 (603)
T ss_pred             ----cccccCceeEEEecC-ceEEeccCcceeEEe
Confidence                456667999999754 678899999999998

>KOG0645|consensus

Probab=99.93  E-value=1.2e-22  Score=146.35  Aligned_cols=234  Identities=15%  Similarity=0.225  Sum_probs=183.5

Q ss_pred             CCCCcCCCCcceEEcCC-CcEEEEeCCCCeEEEeccccccccc---eeeE-----EecCceeeEEcCCCcEEEEcCCCCe
Q psy13998         50 SEPGCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTN---CVFL-----AFTWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        50 ~~~~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~---~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      ..++|.+.++.++++|. |.++++++.|+.|++    |+....   ....     +...+..++++|.|+++++++.|.+
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vri----w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRI----WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEE----EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            45688889999999997 899999999999999    766521   1111     3457899999999999999999999


Q ss_pred             EEEEcC-CC--cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        121 VQVFQS-DG--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       121 i~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +.+|.. ++  +.+..+      ++|...+.+++|+++|+++++++.++.|.+|..+...   +-.....+      ..|
T Consensus        85 ~~Iw~k~~~efecv~~l------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd---Efec~aVL------~~H  149 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATL------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD---EFECIAVL------QEH  149 (312)
T ss_pred             EEEeecCCCceeEEeee------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC---cEEEEeee------ccc
Confidence            999984 33  344445      7888999999999999999999999999999876210   01122222      567


Q ss_pred             CCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-C---CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-G---RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       198 ~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      .+....+.++|...++++.+.++.|++|... +   ..+.++      .++.+.+.+++|++.|..+++++.++++.+|.
T Consensus       150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe------cCccceEEEEEecCCCceEEEecCCcceEeee
Confidence            7778889999998999999999999999843 3   345566      56666889999999999999999999999998


Q ss_pred             CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .-.    .+.     ..|...+..+++. + .++++++.|+.|++|
T Consensus       224 ~~~----~~~-----~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf  258 (312)
T KOG0645|consen  224 LYT----DLS-----GMHSRALYDVPWD-N-GVIASGGGDDAIRLF  258 (312)
T ss_pred             ecc----Ccc-----hhcccceEeeeec-c-cceEeccCCCEEEEE
Confidence            421    111     2344567778888 3 579999999999987

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.93  E-value=4.3e-22  Score=178.61  Aligned_cols=262  Identities=23%  Similarity=0.394  Sum_probs=185.4

Q ss_pred             CcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-----------------EecCceeeEEcCCCc-EEE
Q psy13998         53 GCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------------AFTWPRGIAVGPDNS-IVV  113 (319)
Q Consensus        53 ~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~g~-~~~  113 (319)
                      ..+..|.++++++ +|++|++++.+++|++    ++........                 .+..|.+++++++++ +|+
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v----~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV  640 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVV----TDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV  640 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCCeEEE----EeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence            3467888999997 5789999999999999    6654321111                 245689999998865 899


Q ss_pred             EcCCCCeEEEEcCCCcEEEEecCCCcc-----------CCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceee--
Q psy13998        114 ADSSNHRVQVFQSDGTFVGKFGSMGNK-----------AGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQ--  179 (319)
Q Consensus       114 ~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~--  179 (319)
                      ++..++.|+++|..+..+..+...+..           ......|.++++++ ++.+|+++..++.|++|+..+....  
T Consensus       641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~  720 (1057)
T PLN02919        641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF  720 (1057)
T ss_pred             EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            999999999999666655555322110           01246789999999 7899999999999999998653221  


Q ss_pred             -ecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCC-CEEEEeCCC----------CC-----C
Q psy13998        180 -SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNG-RVITSFGSE----------GS-----E  241 (319)
Q Consensus       180 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~-~~~~~~~~~----------~~-----~  241 (319)
                       .+|.... ..........+..|.+|++++++. +|+++..+++|++||.+. ......+..          +.     .
T Consensus       721 ~G~G~~~~-~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~  799 (1057)
T PLN02919        721 SGDGYERN-LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS  799 (1057)
T ss_pred             ecCCcccc-CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence             1111000 000001123456899999999985 999999999999999753 322111100          00     0


Q ss_pred             cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccC--------CCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG--------SGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ...+..|.+++++++|++||++..+++|++|+.++..+..+...+        .....+..|.+|+++++|++||++..+
T Consensus       800 ~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        800 EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence            123567899999999999999999999999998665555443221        113356689999999999999999999


Q ss_pred             CeEEeC
Q psy13998        314 HRIQVF  319 (319)
Q Consensus       314 ~~i~v~  319 (319)
                      ++|++|
T Consensus       880 n~Irvi  885 (1057)
T PLN02919        880 SLIRYL  885 (1057)
T ss_pred             CEEEEE
Confidence            999986

>KOG0645|consensus

Probab=99.93  E-value=9.6e-23  Score=146.80  Aligned_cols=266  Identities=13%  Similarity=0.145  Sum_probs=199.8

Q ss_pred             cccccccCCCcc-chhccccceeeeecccCCC------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPR-SQYLQKRRLQFKIGSRGSE------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~   87 (319)
                      .+++..++++|- |.++++++.++.+.+|...            .+|...+..++++|.|+++++++.|.++.+    |.
T Consensus        14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I----w~   89 (312)
T KOG0645|consen   14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI----WK   89 (312)
T ss_pred             CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE----ee
Confidence            567899999998 8899999999888888665            246688999999999999999999999999    65


Q ss_pred             cccc--eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC--Cc--EEEEecCCCccCCCCCCceeEEEeCCCe
Q psy13998         88 LKTN--CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD--GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNR  157 (319)
Q Consensus        88 ~~~~--~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~  157 (319)
                      ....  +.+.    |-..+.+++|+++|++++++++++.|.+|..+  ++  ....+      ..|...+..+.++|...
T Consensus        90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL------~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL------QEHTQDVKHVIWHPTED  163 (312)
T ss_pred             cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee------ccccccccEEEEcCCcc
Confidence            5321  2222    33477899999999999999999999999843  32  23333      56778889999999999


Q ss_pred             EEEEeCCCCEEEEEecC-CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeC
Q psy13998        158 VIVSDSNNHRVQIFDVN-GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFG  236 (319)
Q Consensus       158 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~  236 (319)
                      ++++++.|++|++|... +.    +-.++..+      .++.....+++|++.|..+++++.++.+.+|-.-.    .+.
T Consensus       164 lL~S~SYDnTIk~~~~~~dd----dW~c~~tl------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~----~~~  229 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDD----DWECVQTL------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT----DLS  229 (312)
T ss_pred             eeEEeccCCeEEEEeecCCC----CeeEEEEe------cCccceEEEEEecCCCceEEEecCCcceEeeeecc----Ccc
Confidence            99999999999999765 21    22344444      34555788999999999999999999999996221    110


Q ss_pred             CCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC----ceEEeecccCCCCCCCCCcceEEEccC-CcEEEEeC
Q psy13998        237 SEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG----QFLRAFGCWGSGDGEFKGLEGVAVMSN-GNILVCDR  311 (319)
Q Consensus       237 ~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~v~~~  311 (319)
                           ..+......+++. + ..++++++|+.|++|....    .....+..  ....|...+++++++|. .+++++++
T Consensus       230 -----~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~--~~~aHe~dVNsV~w~p~~~~~L~s~~  300 (312)
T KOG0645|consen  230 -----GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAK--KEGAHEVDVNSVQWNPKVSNRLASGG  300 (312)
T ss_pred             -----hhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHh--hhcccccccceEEEcCCCCCceeecC
Confidence                 1122345667887 3 5788999999999998432    11111110  11346668999999995 46999999


Q ss_pred             CCCeEEeC
Q psy13998        312 ENHRIQVF  319 (319)
Q Consensus       312 ~~~~i~v~  319 (319)
                      .||.|++|
T Consensus       301 DDG~v~~W  308 (312)
T KOG0645|consen  301 DDGIVNFW  308 (312)
T ss_pred             CCceEEEE
Confidence            99999998

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=2.1e-22  Score=178.94  Aligned_cols=270  Identities=15%  Similarity=0.229  Sum_probs=199.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC----C-----------cCCCCcceEEcC-CCcEEEEeCCCCeEEEecc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP----G-----------CFTWPRGIAVGP-DNSIVVADSSNHRVQVCFP   84 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~-----------~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~   84 (319)
                      ...|.+++|+|++.++++++.+..+.+|+...    +           +...+.++++++ ++.++++++.|+.|++   
T Consensus       483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l---  559 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV---  559 (793)
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE---
Confidence            45588899999999999999888888886421    0           123467888877 4678999999999999   


Q ss_pred             ccccccceeeEEe----cCceeeEEcC-CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe-CCCe
Q psy13998         85 HFDLKTNCVFLAF----TWPRGIAVGP-DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNR  157 (319)
Q Consensus        85 ~~~~~~~~~~~~~----~~~~~l~~~~-~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~  157 (319)
                       ||..+......+    ..+.++++++ ++.++++++.++.|++|| ..+..+..+..       ...+.++.+. +++.
T Consensus       560 -Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-------~~~v~~v~~~~~~g~  631 (793)
T PLN00181        560 -WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-------KANICCVQFPSESGR  631 (793)
T ss_pred             -EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-------CCCeEEEEEeCCCCC
Confidence             988766655533    3578999996 678999999999999999 55666655521       1356778885 4789


Q ss_pred             EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-------CC
Q psy13998        158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-------GR  230 (319)
Q Consensus       158 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-------~~  230 (319)
                      ++++++.++.|++||++...     ..+..+      ..|...+..+.+. ++..+++++.++.|++||..       ..
T Consensus       632 ~latgs~dg~I~iwD~~~~~-----~~~~~~------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~  699 (793)
T PLN00181        632 SLAFGSADHKVYYYDLRNPK-----LPLCTM------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET  699 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCC-----ccceEe------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc
Confidence            99999999999999986421     111222      2344566778886 56788899999999999964       23


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeec--ccC-----CCCCCCCCcceEEEcc
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFG--CWG-----SGDGEFKGLEGVAVMS  302 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~--~~~-----~~~~~~~~~~~l~~~~  302 (319)
                      .+..+      .++...+..+++++++.++++++.++.|.+|+.. ...+..+.  ...     ....+...+.+++|++
T Consensus       700 ~l~~~------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        700 PLHSF------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             ceEEE------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence            44555      4556667889999999999999999999999953 22222211  000     0022345689999999


Q ss_pred             CCcEEEEeCCCCeEEeC
Q psy13998        303 NGNILVCDRENHRIQVF  319 (319)
Q Consensus       303 ~g~~~v~~~~~~~i~v~  319 (319)
                      ++.++++++.+|.|++|
T Consensus       774 ~~~~lva~~~dG~I~i~  790 (793)
T PLN00181        774 QSSTLVAANSTGNIKIL  790 (793)
T ss_pred             CCCeEEEecCCCcEEEE
Confidence            99999999999999998

>KOG0316|consensus

Probab=99.92  E-value=4.5e-23  Score=145.67  Aligned_cols=232  Identities=16%  Similarity=0.277  Sum_probs=184.7

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .++...+..+.++-+|++.++++.|.+|++    |++..+..++.+.    .+.+++.+.|+..+.+++.|..+.+|| .
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrL----WNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRL----WNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEe----ecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            455678899999999999999999999999    8887777766443    567788888888999999999999999 7


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +|+..+++      .+|...++.+.|..+..++++++.|.++++||.+...+    +++..+      ......+.++.+
T Consensus        90 TGkv~Rr~------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~----ePiQil------dea~D~V~Si~v  153 (307)
T KOG0316|consen   90 TGKVDRRF------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF----EPIQIL------DEAKDGVSSIDV  153 (307)
T ss_pred             cCeeeeec------ccccceeeEEEecCcceEEEeccccceeEEEEcccCCC----Cccchh------hhhcCceeEEEe
Confidence            89999999      78889999999999999999999999999999886422    222222      122233444444


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                        .+..+++++.+|+++.||. .|+.....        ....++++.++++++...+++.++.|++.| .+|++++.+  
T Consensus       154 --~~heIvaGS~DGtvRtydiR~G~l~sDy--------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY--  221 (307)
T KOG0316|consen  154 --AEHEIVAGSVDGTVRTYDIRKGTLSSDY--------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY--  221 (307)
T ss_pred             --cccEEEeeccCCcEEEEEeecceeehhh--------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh--
Confidence              5678999999999999995 56544332        223578999999999999999999999999 578888887  


Q ss_pred             cCCCCCCCCC--cceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDGEFKG--LEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~~--~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                          .+|.+.  -...++......+++++.||.|.+|
T Consensus       222 ----kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  222 ----KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             ----cccccceeeeeeeecccceeEEeccCCceEEEE
Confidence                455433  3455666666799999999999988

>KOG1446|consensus

Probab=99.92  E-value=3.8e-22  Score=146.84  Aligned_cols=270  Identities=12%  Similarity=0.155  Sum_probs=200.8

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCcC--------CCCcceEEcCCCcEEEEeCC--CCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF--------TWPRGIAVGPDNSIVVADSS--NHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~g~~~~~~~~--~~~v~~~~~~~~~~~   90 (319)
                      ...|.++.|+++|..+.+.+.+-.+.+++...+..        ..+..+.|....+.++.++.  |.+|+.    .++.+
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry----Lsl~d   89 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY----LSLHD   89 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE----EEeec
Confidence            57899999999999999988887887777766643        46777888776665555554  889999    99988


Q ss_pred             ceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         91 NCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        91 ~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      ++.++.+    ..+.+|.++|-++.+++++.|++|++||.. .+....+.        .......|++|+|-+++++...
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--------~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--------LSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--------cCCCcceeECCCCcEEEEecCC
Confidence            8888844    467899999999999999999999999943 33333331        2333568999999999999888


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCccc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQ  244 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~  244 (319)
                      ..|++||++.-    +..+...+...   ......-..|.|+++|+.++.....+.+++.| .+|.....+....   ..
T Consensus       162 ~~IkLyD~Rs~----dkgPF~tf~i~---~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~---~~  231 (311)
T KOG1446|consen  162 ELIKLYDLRSF----DKGPFTTFSIT---DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP---NA  231 (311)
T ss_pred             CeEEEEEeccc----CCCCceeEccC---CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc---CC
Confidence            89999998742    11222222211   12334557799999999888888889999999 5898877774332   22


Q ss_pred             ccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        245 LKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       245 ~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...|.+.++.||++++++++.|++|++|+ .+|+.+..+..     .+...+..+.|+|.-.++++++.  .+.+|
T Consensus       232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-----~~~~~~~~~~fnP~~~mf~sa~s--~l~fw  300 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-----PNGGPVSCVRFNPRYAMFVSASS--NLVFW  300 (311)
T ss_pred             CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC-----CCCCCccccccCCceeeeeecCc--eEEEE
Confidence            33457889999999999999999999999 57877777632     14556777889998777777654  35444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=4.8e-22  Score=156.71  Aligned_cols=234  Identities=21%  Similarity=0.395  Sum_probs=181.4

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      .+|...+.+++++|+++++++++.++.+.+    |+..+......+    ..+..+.+.++++.+++++.++.|.+|+..
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKV----WDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEE----EEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            366788999999999999999999999999    887655433322    234588999999888888889999999954


Q ss_pred             -CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        128 -GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       128 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                       ++....+      ..+...+.++.+++++++++++..++.+.+|++...      +....+      ..+...+.++++
T Consensus        82 ~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~------~~~~~~i~~~~~  143 (289)
T cd00200          82 TGECVRTL------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG------KCLTTL------RGHTDWVNSVAF  143 (289)
T ss_pred             cccceEEE------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc------EEEEEe------ccCCCcEEEEEE
Confidence             4555555      334456789999999888888888999999998732      333333      233456788999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecc
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGC  284 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~  284 (319)
                      ++++.+++++..++.|++||.. ++....+      ..+...+.+++++|+++.+++++.++.|.+|+.. ++.+..+  
T Consensus       144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--  215 (289)
T cd00200         144 SPDGTFVASSSQDGTIKLWDLRTGKCVATL------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--  215 (289)
T ss_pred             cCcCCEEEEEcCCCcEEEEEccccccceeE------ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch--
Confidence            9998888888879999999975 5555555      3444568899999999777777889999999954 6666665  


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                          ..+...+.++++++++.++++++.++.|++|
T Consensus       216 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~  246 (289)
T cd00200         216 ----RGHENGVNSVAFSPDGYLLASGSEDGTIRVW  246 (289)
T ss_pred             ----hhcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence                3455689999999998899998889999887

>KOG0295|consensus

Probab=99.92  E-value=1.7e-23  Score=156.54  Aligned_cols=261  Identities=16%  Similarity=0.210  Sum_probs=199.7

Q ss_pred             cccCCCccchhccccceeeeecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCc
Q psy13998         25 GQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWP  100 (319)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~  100 (319)
                      .-+++.|.+..-.......++.......|+-..++.+-+.|+-.+.++++.+.+|++    ||..+++...    +.+..
T Consensus        78 el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv----~D~~tg~~e~~LrGHt~sv  153 (406)
T KOG0295|consen   78 ELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKV----FDTETGELERSLRGHTDSV  153 (406)
T ss_pred             ccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEE----EEccchhhhhhhhccccce
Confidence            344455655554443333344444445667788999999999889999999999999    9988776644    55678


Q ss_pred             eeeEEcCCCcEEEEcCCCCeEEEEcCCC--cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998        101 RGIAVGPDNSIVVADSSNHRVQVFQSDG--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      .++.++..|+++++++.|-.+.+||.+.  +.++..      .+|...+.++++-|.|..+++++.|.+|+.|+.++   
T Consensus       154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t---  224 (406)
T KOG0295|consen  154 FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT---  224 (406)
T ss_pred             eEEEEecCccEEEecCCccchhheeHHHHHHHHHHh------cCcccceeeEEEEecCCeeeecccccceeEEeccc---
Confidence            9999999999999999998899999543  222222      56778889999999999999999999999999984   


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcC--
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDD--  255 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~--  255 (319)
                         |-.+..+      .++......+.+..||.++.+++.+.++++|-...+ ....+      ..+...+.+++|-|  
T Consensus       225 ---g~cv~t~------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l------R~hEh~vEci~wap~~  289 (406)
T KOG0295|consen  225 ---GYCVKTF------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL------REHEHPVECIAWAPES  289 (406)
T ss_pred             ---ceeEEec------cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh------hccccceEEEEecccc
Confidence               3555555      455567788999999999999999999999985432 11111      11222222233221  


Q ss_pred             -------------CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        256 -------------QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 -------------~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                                   .+.++.+++.|++|++|| ..|..+.++      .+|.+++.+++|+|.|+++++...|+++++|
T Consensus       290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw  361 (406)
T KOG0295|consen  290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL------VGHDNWVRGVAFSPGGKYILSCADDKTLRVW  361 (406)
T ss_pred             cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE------ecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence                         136899999999999999 689999999      6899999999999999999999999999998

>KOG0278|consensus

Probab=99.92  E-value=2.3e-24  Score=153.51  Aligned_cols=261  Identities=14%  Similarity=0.223  Sum_probs=198.1

Q ss_pred             cccccCCC---ccchhccccceeeeeccc--------CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         23 GIGQVGTT---PRSQYLQKRRLQFKIGSR--------GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        23 ~i~~~~~~---~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      .|.-++||   |++.+|.+...+..-...        |...||...+++.+++.+-..-++++.|-+-++    |+.-++
T Consensus        16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv----w~a~tg   91 (334)
T KOG0278|consen   16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV----WDAVTG   91 (334)
T ss_pred             ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh----hhhhhh
Confidence            44455554   467777776655432222        445788899999999988888889999999999    998887


Q ss_pred             eeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcCCC--cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC
Q psy13998         92 CVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQSDG--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH  166 (319)
Q Consensus        92 ~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~  166 (319)
                      ..+..+.   -+..++|+.|.+.+++++.++-+++||.+.  .+..++      .+|...+..+.|....+.+++...++
T Consensus        92 delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~------~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   92 DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI------SGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh------cCCCCcceeEEEeccCceEEeeccCC
Confidence            7766444   467899999999999999999999999443  223333      45667778888888778888889999


Q ss_pred             EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccc
Q psy13998        167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQL  245 (319)
Q Consensus       167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~  245 (319)
                      .|++||..+.      +.+..+.       ....+.++.++++|+++.... .+.|..||+.. ..++.+..       .
T Consensus       166 tVRLWD~rTg------t~v~sL~-------~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-------P  224 (334)
T KOG0278|consen  166 TVRLWDHRTG------TEVQSLE-------FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-------P  224 (334)
T ss_pred             ceEEEEeccC------cEEEEEe-------cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-------c
Confidence            9999998743      4444432       224578899999998776655 56799999753 45555421       2


Q ss_pred             cCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+.+..+.|+..+||+++.+..++.|| .+|..+..+.     .+|+..+.++.|+|||.+|++++.||+||+|
T Consensus       225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-----KGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             cccccccccCCCceEEecCcceEEEEEeccCCceeeecc-----cCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence            2356677889989999999999999999 4666665532     6889999999999999999999999999998

>KOG0306|consensus

Probab=99.92  E-value=3.1e-23  Score=168.72  Aligned_cols=270  Identities=16%  Similarity=0.196  Sum_probs=200.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCc------CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC------FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF   94 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (319)
                      .+-|..+++|.+...+.++.. ..+.+|.....+      -..+.+..|-|.+++++.+..+|.+.+    |++.+....
T Consensus       373 R~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~v----fdlaS~~l~  447 (888)
T KOG0306|consen  373 RSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQV----FDLASASLV  447 (888)
T ss_pred             hhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEE----EEeehhhhh
Confidence            345666666666666555432 244444433221      135566677777777777777787777    776544333


Q ss_pred             E----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC------CcEEEEecCCC-ccCCCCCCceeEEEeCCCeEEEEeC
Q psy13998         95 L----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD------GTFVGKFGSMG-NKAGQLEHPHYIAVSNTNRVIVSDS  163 (319)
Q Consensus        95 ~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~~~  163 (319)
                      .    |-..+..++..||+.-+++++.|++|+.||..      |...+.+.... ....-...+.++.++|||++++.+-
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence            2    33467889999999999999999999999821      21111111000 0011235678999999999999999


Q ss_pred             CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCc
Q psy13998        164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEE  242 (319)
Q Consensus       164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~  242 (319)
                      -|+++.+|-+++-      ++.-.+      .+|.-.+.+|.++|+++++++++.|..|++|..+ |...+.+      -
T Consensus       528 LdnTVkVyflDtl------KFflsL------YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~------f  589 (888)
T KOG0306|consen  528 LDNTVKVYFLDTL------KFFLSL------YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF------F  589 (888)
T ss_pred             ccCeEEEEEecce------eeeeee------cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh------h
Confidence            9999999988753      222222      5677778999999999999999999999999976 5666666      6


Q ss_pred             ccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|...+.++.|-|+..++++++.|+.|..|| ..-+.++.+      ++|...++++++.|+|.++++++.|.+||+|
T Consensus       590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L------~~H~~ev~cLav~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL------DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee------ccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence            6777889999999999999999999999999 344566677      7899999999999999999999999999998

>KOG0284|consensus

Probab=99.92  E-value=3e-24  Score=162.75  Aligned_cols=231  Identities=12%  Similarity=0.142  Sum_probs=187.1

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce----eeEEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC----VFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      ..|..|.+.|+|+.+++++..|.+.+    |+..+..    ...|-..+.++.++++|...+++..++.|++|+++-..+
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtL----WNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTL----WNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEE----ecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence            35678999999999999999999999    7663211    111445778999999999999999999999999765555


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      +.+.     ..+...+.+++|+|++..|++++.|++|++||....      +....+      .+|--.+.++.++|...
T Consensus       173 k~~~-----ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~------kee~vL------~GHgwdVksvdWHP~kg  235 (464)
T KOG0284|consen  173 KIIQ-----AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP------KEERVL------RGHGWDVKSVDWHPTKG  235 (464)
T ss_pred             HHhh-----HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC------chhhee------ccCCCCcceeccCCccc
Confidence            5442     234478899999999999999999999999997531      111111      34556688999999999


Q ss_pred             EEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCC
Q psy13998        212 VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGD  289 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  289 (319)
                      ++++++.++.|++||+ +|..+.++      ..|.+.+.++.|.++++++++.+.|..+.+||.. -+.+..+      .
T Consensus       236 LiasgskDnlVKlWDprSg~cl~tl------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~------r  303 (464)
T KOG0284|consen  236 LIASGSKDNLVKLWDPRSGSCLATL------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY------R  303 (464)
T ss_pred             eeEEccCCceeEeecCCCcchhhhh------hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh------h
Confidence            9999999999999996 67777777      6788889999999999999999999999999954 4555566      6


Q ss_pred             CCCCCcceEEEccCC-cEEEEeCCCCeEEeC
Q psy13998        290 GEFKGLEGVAVMSNG-NILVCDRENHRIQVF  319 (319)
Q Consensus       290 ~~~~~~~~l~~~~~g-~~~v~~~~~~~i~v~  319 (319)
                      +|...+++++++|=. .++++++.|+.|..|
T Consensus       304 ~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  304 GHKKDVTSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             cchhhheeeccccccccceeeccCCCceEEE
Confidence            788899999999865 499999999999876

>KOG0319|consensus

Probab=99.92  E-value=6.5e-23  Score=166.43  Aligned_cols=240  Identities=14%  Similarity=0.217  Sum_probs=197.1

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE--------EecCceeeEEcCCC-cEEEEcCCCCeEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGPDN-SIVVADSSNHRVQ  122 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~g-~~~~~~~~~~~i~  122 (319)
                      +||-+.+.++....+|.++++++.|.++++    |.+..+....        |-..+.+++++..+ ..+++.+.|.+++
T Consensus       362 ~GH~e~vlSL~~~~~g~llat~sKD~svil----Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  362 PGHTEAVLSLDVWSSGDLLATGSKDKSVIL----WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             eCchhheeeeeecccCcEEEEecCCceEEE----EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence            678889999997778899999999999999    8663222211        44567788887666 5899999999999


Q ss_pred             EEcCCC-cEE---EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        123 VFQSDG-TFV---GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       123 ~~~~~~-~~~---~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      +|+... +..   ..+........|...++++++.|+.+++++++.|+..++|+++.      ..+...+      .+|.
T Consensus       438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~------~~l~~vL------sGH~  505 (775)
T KOG0319|consen  438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ------LRLLGVL------SGHT  505 (775)
T ss_pred             EecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC------ceEEEEe------eCCc
Confidence            999332 111   11111112245677899999999999999999999999999872      3455554      6778


Q ss_pred             CCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCC
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDG  276 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g  276 (319)
                      ....++.|++..+++++++.|.+|++|.. +...++++      .+|...+....|-.+|..+++++.+|-|.+|+ .++
T Consensus       506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             cceEEEEeccccceeEeccCCceEEEEEeccceeeeee------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            88999999999999999999999999996 56778888      78888899999999999999999999999999 567


Q ss_pred             ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        277 QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .-+.++      +.|...+|+++.++.+.++++++.|++|.+|
T Consensus       580 eC~~tl------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  580 ECEMTL------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             hhhhhh------hhccceeEEEeecCccceeEecCCCeEEEEe
Confidence            778888      8899999999999999999999999999988

>KOG0643|consensus

Probab=99.92  E-value=2.3e-22  Score=144.67  Aligned_cols=271  Identities=13%  Similarity=0.155  Sum_probs=200.2

Q ss_pred             hcccccccCCCccchhccccceeeeeccc--------CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         20 LVSGIGQVGTTPRSQYLQKRRLQFKIGSR--------GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        20 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      .+-.+.++-+..+|.+|-+.+.+.+...|        |.-.||...++++.++.+.+.+++++.|.++++    ||.+++
T Consensus         9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL----WDv~tG   84 (327)
T KOG0643|consen    9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL----WDVETG   84 (327)
T ss_pred             CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE----EEcCCC
Confidence            46678888888888888888777665555        344688899999999999999999999999999    999998


Q ss_pred             eeeEEec---CceeeEEcCCCcEEEEcCC-----CCeEEEEc-CC-------CcEEEEecCCCccCCCCCCceeEEEeCC
Q psy13998         92 CVFLAFT---WPRGIAVGPDNSIVVADSS-----NHRVQVFQ-SD-------GTFVGKFGSMGNKAGQLEHPHYIAVSNT  155 (319)
Q Consensus        92 ~~~~~~~---~~~~l~~~~~g~~~~~~~~-----~~~i~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (319)
                      +.+..+.   .+..+.|+.+|++++....     .+.|.+++ .+       .++...+.      .+...+..+.|.|-
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~------t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP------TPDSKITSALWGPL  158 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec------CCccceeeeeeccc
Confidence            8877665   4467889999987766543     35788887 31       22344442      23367788899999


Q ss_pred             CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEE
Q psy13998        156 NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITS  234 (319)
Q Consensus       156 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~  234 (319)
                      ++.++++..++.|.+||.+...     +++...      ..|...++.|.++++..+|++++.|..-++||. +-+.+++
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~-----~~v~s~------~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt  227 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGK-----ELVDSD------EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT  227 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCc-----eeeech------hhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence            9999999999999999987421     122111      334457788999999999999999999999995 4455666


Q ss_pred             eCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc---CCCceEEee------cccCCCCCCCCCcceEEEccCCc
Q psy13998        235 FGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT---PDGQFLRAF------GCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~---~~g~~~~~~------~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      +.       ....+++.+++|....++.+++...--+-.   ..|+.-..+      +..+...+|+..+++++|+|+|+
T Consensus       228 y~-------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk  300 (327)
T KOG0643|consen  228 YT-------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK  300 (327)
T ss_pred             ee-------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence            52       223467889999876666665443333322   234332211      12234478999999999999999


Q ss_pred             EEEEeCCCCeEEe
Q psy13998        306 ILVCDRENHRIQV  318 (319)
Q Consensus       306 ~~v~~~~~~~i~v  318 (319)
                      .|.+++.||.||+
T Consensus       301 sYsSGGEDG~VR~  313 (327)
T KOG0643|consen  301 SYSSGGEDGYVRL  313 (327)
T ss_pred             ccccCCCCceEEE
Confidence            9999999999987

>KOG0282|consensus

Probab=99.91  E-value=3.3e-23  Score=160.36  Aligned_cols=236  Identities=14%  Similarity=0.225  Sum_probs=186.1

Q ss_pred             CCCcCCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc-ceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEE
Q psy13998         51 EPGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT-NCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVF  124 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~-~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~  124 (319)
                      -.||...+.++.|.| .+.++++++.|+.|++    |+... .+.+.    |-..+.+++|+.+|..+++++.|..+++|
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vkl----W~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKL----WNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEE----EEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            368889999999999 8999999999999999    77654 34444    33467889999999999999999999999


Q ss_pred             c-CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        125 Q-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      | .+|+.+..+...       ..|.++.++|++ ++|+++..+++|+-||++.      ++++..+      ..++....
T Consensus       286 DtETG~~~~~f~~~-------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs------~kvvqeY------d~hLg~i~  346 (503)
T KOG0282|consen  286 DTETGQVLSRFHLD-------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS------GKVVQEY------DRHLGAIL  346 (503)
T ss_pred             ccccceEEEEEecC-------CCceeeecCCCCCcEEEEecCCCcEEEEeccc------hHHHHHH------Hhhhhhee
Confidence            9 788888887432       567899999988 9999999999999999984      3555554      34566778


Q ss_pred             eEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce----
Q psy13998        203 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF----  278 (319)
Q Consensus       203 ~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~----  278 (319)
                      .+.|-++|+.+++.+.++.+++|+..-........    ........++...|.+.++++.+.++.|.+|...-..    
T Consensus       347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~----~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA----DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             eeEEccCCceEeeeccCccEEEEEcCCCccchhhc----chhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence            89999999999999999999999964333222211    1223345678999999999999999999999843222    


Q ss_pred             EEeecccCCCCCC--CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        279 LRAFGCWGSGDGE--FKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       279 ~~~~~~~~~~~~~--~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+.+      .+|  ......+.|+|||+++++|..+|.+.+|
T Consensus       423 kK~f------eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~w  459 (503)
T KOG0282|consen  423 KKRF------EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFW  459 (503)
T ss_pred             hhhh------cceeccCceeeEEEcCCCCeEEeecCCccEEEe
Confidence            1222      232  3456778999999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=3.8e-21  Score=170.97  Aligned_cols=232  Identities=16%  Similarity=0.223  Sum_probs=177.3

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc---e--------eeEEecCceeeEEcCC-CcEEEEcCCCC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN---C--------VFLAFTWPRGIAVGPD-NSIVVADSSNH  119 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~---~--------~~~~~~~~~~l~~~~~-g~~~~~~~~~~  119 (319)
                      .+|...+.+++|+++|+++++++.|+.|++    |+..+.   .        .......+.++++++. +.++++++.++
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~i----wd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKI----FECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEE----EECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCC
Confidence            446678999999999999999999999999    765321   0        0111234567888864 67888999999


Q ss_pred             eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        120 RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       120 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      .|++|| .+++.+..+      .+|...+.++++++ ++.++++++.|+.|++||+...      ..+..+.       .
T Consensus       556 ~v~lWd~~~~~~~~~~------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~------~~~~~~~-------~  616 (793)
T PLN00181        556 VVQVWDVARSQLVTEM------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG------VSIGTIK-------T  616 (793)
T ss_pred             eEEEEECCCCeEEEEe------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC------cEEEEEe-------c
Confidence            999999 556666666      45677889999997 7899999999999999998742      3333331       1


Q ss_pred             CCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCC-C-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        198 LEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNG-R-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       198 ~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ...+.++.+. +++.++++++.++.|++||... . ....+      .++...+..+.|. ++..+++++.|+.|++||.
T Consensus       617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence            1245677775 5689999999999999999643 3 23344      4555667888886 6778899999999999995


Q ss_pred             C-------CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        275 D-------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       275 ~-------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .       ++.+..+      .+|...+..+++++++.++++++.|+.|++|
T Consensus       690 ~~~~~~~~~~~l~~~------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw  735 (793)
T PLN00181        690 SMSISGINETPLHSF------MGHTNVKNFVGLSVSDGYIATGSETNEVFVY  735 (793)
T ss_pred             CCCccccCCcceEEE------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEE
Confidence            3       2455566      5677778899999999999999999999998

>KOG0265|consensus

Probab=99.91  E-value=8.3e-22  Score=143.97  Aligned_cols=238  Identities=14%  Similarity=0.232  Sum_probs=182.7

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee-----EEecCceeeEEcCCCcEEEEcCCCCeEEEEc
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF-----LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ  125 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~  125 (319)
                      .+||...+..+.|+|+|..|++++.|..|.+    |+.....+-     .+-..+.++.+.++++.+++++.|.+++.||
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~L----Wnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVL----WNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEE----EeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            4678889999999999999999999999999    775322211     1445778899999999999999999999999


Q ss_pred             -CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        126 -SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                       .+|+.++++      .+|...++.+....-| .++.+++.|+++++||++.+      ..+..+       ......++
T Consensus       119 ~~tG~~~rk~------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k------~~~~t~-------~~kyqltA  179 (338)
T KOG0265|consen  119 AETGKRIRKH------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK------EAIKTF-------ENKYQLTA  179 (338)
T ss_pred             cccceeeehh------ccccceeeecCccccCCeEEEecCCCceEEEEeeccc------chhhcc-------ccceeEEE
Confidence             788888887      5566666666644334 56677889999999999854      222221       11234567


Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC----CCce
Q psy13998        204 IAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP----DGQF  278 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~----~g~~  278 (319)
                      +.|..++.-.+++.-|+.|++||+ .+.....+      .++...+++|..+++|.++.+.+.++++++||.    .++.
T Consensus       180 v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l------sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  180 VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL------SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             EEecccccceeeccccCceeeeccccCcceEEe------ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence            888888888899999999999996 45556666      678888999999999999999999999999993    2333


Q ss_pred             -EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        279 -LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       279 -~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       +..+...  ..........++++|+++.+.+++.|+.+.+|
T Consensus       254 ~v~if~g~--~hnfeknlL~cswsp~~~~i~ags~dr~vyvw  293 (338)
T KOG0265|consen  254 CVKIFQGH--IHNFEKNLLKCSWSPNGTKITAGSADRFVYVW  293 (338)
T ss_pred             eEEEeecc--hhhhhhhcceeeccCCCCccccccccceEEEe
Confidence             5544211  01223345677899999999999999999988

>KOG1407|consensus

Probab=99.91  E-value=1.2e-21  Score=140.55  Aligned_cols=233  Identities=14%  Similarity=0.176  Sum_probs=181.3

Q ss_pred             CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCC-cEEEEcCCCCeEE
Q psy13998         50 SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDN-SIVVADSSNHRVQ  122 (319)
Q Consensus        50 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g-~~~~~~~~~~~i~  122 (319)
                      ...+|...+.+|++..+|..+++++.++++.+    |++.......      +...+..++++|.. .++++.+.+..|+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v----~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSV----WNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEE----EEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            44677889999999999999999999999999    7775443222      33356678888754 6899999999999


Q ss_pred             EEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        123 VFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      +|| ..++.+..+...+       .-..++++|+|++++.+..+..|..+|.+...      .....       ......
T Consensus        91 ~wd~r~~k~~~~i~~~~-------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~------~~~~~-------~~~~e~  150 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKG-------ENINITWSPDGEYIAVGNKDDRITFIDARTYK------IVNEE-------QFKFEV  150 (313)
T ss_pred             EEEeccCcEEEEeeccC-------cceEEEEcCCCCEEEEecCcccEEEEEecccc------eeehh-------ccccee
Confidence            999 7888887775432       22568999999999999999999999887432      11111       112233


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceE
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFL  279 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~  279 (319)
                      +-++++-++.+|+...+.|.|.+.. +.-+.+..+      .+|.....+|.|+|+|++|++++.|..+.+||.+- --+
T Consensus       151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~  224 (313)
T KOG1407|consen  151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE  224 (313)
T ss_pred             eeeeecCCCCEEEEecCCceEEEEecccccccccc------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence            4577877788888888899999988 666777777      67777788999999999999999999999999653 334


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      +.+      ....-.+..|.|+-||+++++++.|+.|-|
T Consensus       225 R~i------sRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  225 RCI------SRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             eee------ccccCceEEEEeccCcceeeccCccceEEe
Confidence            555      445567899999999999999999998754

>KOG0283|consensus

Probab=99.90  E-value=7e-22  Score=162.81  Aligned_cols=237  Identities=13%  Similarity=0.193  Sum_probs=172.1

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-----------------------------e-eeE-------
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-----------------------------C-VFL-------   95 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-----------------------------~-~~~-------   95 (319)
                      .|.+.++++.|++||+++++++.|+.|++    |.....                             . ...       
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virV----WkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRV----WKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEE----EEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            67789999999999999999999999999    554320                             0 000       


Q ss_pred             ---------------------------EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCC-cEEEEecCCCccCCCCCCc
Q psy13998         96 ---------------------------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDG-TFVGKFGSMGNKAGQLEHP  147 (319)
Q Consensus        96 ---------------------------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~  147 (319)
                                                 |...+.+|.|+.+ +++++.+-|.+|++|.+.. ..+..|       .|...+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-------~HndfV  412 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-------SHNDFV  412 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-------ecCCee
Confidence                                       2234567888764 5788889999999999654 456665       477899


Q ss_pred             eeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe
Q psy13998        148 HYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD  226 (319)
Q Consensus       148 ~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~  226 (319)
                      ++++|+| |.++|++++-|+++++|++...      +++.-.       .-...++++++.|+|+..+.++.+|.+++|+
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~------~Vv~W~-------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~  479 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDK------KVVDWN-------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYD  479 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcC------eeEeeh-------hhhhhheeEEeccCCceEEEEEeccEEEEEE
Confidence            9999999 8899999999999999998753      332222       1124578899999999999999999999999


Q ss_pred             CCCCEE-EEeC--CCCCCcccccCcceEEEcCCC--cEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEE
Q psy13998        227 VNGRVI-TSFG--SEGSEEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAV  300 (319)
Q Consensus       227 ~~~~~~-~~~~--~~~~~~~~~~~~~~i~~~~~g--~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~  300 (319)
                      ..+... ..+.  ...........++++.+.|..  +++|+ +.|.+|++||. +-+++..+...    .....-....|
T Consensus       480 t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~----~n~~SQ~~Asf  554 (712)
T KOG0283|consen  480 TEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGF----RNTSSQISASF  554 (712)
T ss_pred             ccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhhhccc----ccCCcceeeeE
Confidence            866433 2221  111111122268999998753  35555 78899999995 44555555221    12223455678


Q ss_pred             ccCCcEEEEeCCCCeEEeC
Q psy13998        301 MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       301 ~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.||+++|+++.|..|++|
T Consensus       555 s~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             ccCCCEEEEeecCceEEEE
Confidence            8899999999999999998

>KOG0276|consensus

Probab=99.90  E-value=7.2e-22  Score=157.86  Aligned_cols=265  Identities=13%  Similarity=0.194  Sum_probs=209.5

Q ss_pred             hcccccccCCCccchhccccceeeeecccCCCCCcC--------CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         20 LVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF--------TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        20 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      ..+.|.++.++|....+..+-.+..+.+|+...-.+        ..+.+..|-..-+.+++++.|..|++    |+..+.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrV----fnynt~   87 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRV----FNYNTG   87 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEE----Eecccc
Confidence            367899999999999999888888888887654322        34455666666678999999999999    999888


Q ss_pred             eeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc--EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC
Q psy13998         92 CVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT--FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN  164 (319)
Q Consensus        92 ~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~  164 (319)
                      +.+..+    +.+.+++++|..-.+++.+.|..|++||-+++  ..+.+      .+|.+.+..++|.| |.+.|++++-
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf------eGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF------EGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE------cCcceEEEEEEecCCCccceeeeec
Confidence            888754    47799999999999999999999999995443  44556      78889999999999 6689999999


Q ss_pred             CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC--cEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCC
Q psy13998        165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSDSNNHRVQIFDVN-GRVITSFGSEGSE  241 (319)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~  241 (319)
                      |++|++|.+...      ....++      .+|...++++.+-+.|  .++++++.|..+++||-. -..+.++      
T Consensus       162 DrTVKVWslgs~------~~nfTl------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL------  223 (794)
T KOG0276|consen  162 DRTVKVWSLGSP------HPNFTL------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL------  223 (794)
T ss_pred             cccEEEEEcCCC------CCceee------eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh------
Confidence            999999998742      222223      4667788899887654  588999999999999954 3455666      


Q ss_pred             cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      .+|.+.+..+.|.|.--++++++.||++++|+... +...++      .-...++++|+-.+.++.++.|...+.|.+
T Consensus       224 eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL------n~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  224 EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL------NYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh------hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            78888999999999989999999999999999542 333333      345667888887777777777777776643

>KOG0292|consensus

Probab=99.90  E-value=6.9e-22  Score=163.93  Aligned_cols=240  Identities=15%  Similarity=0.277  Sum_probs=193.3

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCc
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGT  129 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~  129 (319)
                      -..+.+++|.|.-..++++-.+|.|+.    ||...+..+..+    ..+.+++|+|.+-+|++++.|..|++|+ ...+
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQl----WDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQL----WDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeee----ehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            467889999999888888889999999    887655555433    3668999999999999999999999999 5666


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      .+.++      .+|...+..+.|++.--++++++.|.+|++|+-..+      +.+...      .+|...+.|..|+|.
T Consensus        85 clftL------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------~~iavl------tGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   85 CLFTL------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------KCIAVL------TGHNHYVMCAQFHPT  146 (1202)
T ss_pred             ehhhh------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------ceEEEE------ecCceEEEeeccCCc
Confidence            66666      789999999999999899999999999999998754      555555      566677888999998


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCEEEEeCCCC------------------------CCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        210 NRVIVSDSNNHRVQIFDVNGRVITSFGSEG------------------------SEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                      ..++++++-|.+|++||..|-..+.....+                        ...+|-..++-++|.|.--++|+++.
T Consensus       147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            899999999999999998764333221110                        01345556777899998889999999


Q ss_pred             CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |..|.+|..+-.......   +-.+|.+.++++-|+|...++++.+.|+.||||
T Consensus       227 DRqVKlWrmnetKaWEvD---tcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  227 DRQVKLWRMNETKAWEVD---TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             cceeeEEEeccccceeeh---hhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence            999999995533322221   115899999999999999999999999999999

>KOG0293|consensus

Probab=99.90  E-value=5.3e-22  Score=151.08  Aligned_cols=246  Identities=9%  Similarity=0.152  Sum_probs=181.7

Q ss_pred             eeecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee-------EEecCceeeEEcCCCcEEEEc
Q psy13998         43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF-------LAFTWPRGIAVGPDNSIVVAD  115 (319)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~g~~~~~~  115 (319)
                      .....|.....|.+.|+-+.|+++|+++++++.|.+..+    |.......+       .+...+..+.|+||.+.++++
T Consensus       212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taii----w~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAII----WIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEE----EEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence            344555556678899999999999999999999999999    554332221       144567889999999999999


Q ss_pred             CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc
Q psy13998        116 SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK  194 (319)
Q Consensus       116 ~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (319)
                      +.+..+.+|| .+|.....+.     .++...+.+.+|.|||.-+++++.++.+..|+++|.+       +..+..    
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-------~~~W~g----  351 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYP-----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-------LGNWEG----  351 (519)
T ss_pred             CchHheeeccCCcchhhhhcc-----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-------hhcccc----
Confidence            8888999999 5666555553     2233567899999999999999999999999999853       222211    


Q ss_pred             CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                       .......++++.+||+.+++-..+..|++|+.....-+.+      ......++++.++.+|++.++.-.+..+++||.
T Consensus       352 -vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl  424 (519)
T KOG0293|consen  352 -VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGL------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDL  424 (519)
T ss_pred             -cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcc------ccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence             1123467899999998888878899999999755443322      233446789999999999999999999999995


Q ss_pred             C-CceEEeecccCCCCCCCCCcceEEEc-cCCcEEEEeCCCCeEEeC
Q psy13998        275 D-GQFLRAFGCWGSGDGEFKGLEGVAVM-SNGNILVCDRENHRIQVF  319 (319)
Q Consensus       275 ~-g~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~v~~~~~~~i~v~  319 (319)
                      . .+.++.+..    ..+...+-.-+|. .+..++++|+.|+.|+||
T Consensus       425 ~e~~lv~kY~G----hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIW  467 (519)
T KOG0293|consen  425 EENKLVRKYFG----HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIW  467 (519)
T ss_pred             chhhHHHHhhc----ccccceEEEeccCCCCcceEEecCCCceEEEE
Confidence            4 444444411    1222334444554 345799999999999998

>KOG0276|consensus

Probab=99.90  E-value=1.8e-21  Score=155.63  Aligned_cols=233  Identities=16%  Similarity=0.238  Sum_probs=194.2

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDG  128 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~  128 (319)
                      +-+.|.+|.+.|....++++-.+|.|.+    |+.++...+..+.    .+.+..|-+-.+.+++++.|..|++|+ .++
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~I----WnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQI----WNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEE----EecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            4578899999999888888888999999    8887776666443    345566666678899999999999999 677


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      +.+..+      ..|...+.+++++|..-++++.+.|-.|++||-++.-     .....+      .+|...+..+++.|
T Consensus        88 ekV~~F------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-----a~~qtf------eGH~HyVMqv~fnP  150 (794)
T KOG0276|consen   88 EKVKTF------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-----ACEQTF------EGHEHYVMQVAFNP  150 (794)
T ss_pred             eeeEEe------eccccceeeeeecCCCCeEEecCCccEEEEeeccCce-----eeeeEE------cCcceEEEEEEecC
Confidence            888888      6788899999999999999999999999999987531     334444      66777888999998


Q ss_pred             C-CcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC--cEEEEeCCCCEEEEEcCC-CceEEeec
Q psy13998        209 T-NRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFTPD-GQFLRAFG  283 (319)
Q Consensus       209 ~-g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g--~~~v~~~~~~~i~~~~~~-g~~~~~~~  283 (319)
                      . .+.|++++-|++|++|.. ......++      .+|...++++.+-+.|  -++++++.|..|.+||.. ...++++ 
T Consensus       151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-  223 (794)
T KOG0276|consen  151 KDPNTFASASLDRTVKVWSLGSPHPNFTL------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-  223 (794)
T ss_pred             CCccceeeeeccccEEEEEcCCCCCceee------eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-
Confidence            5 488999999999999996 44555666      6788889999998765  489999999999999964 4556777 


Q ss_pred             ccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                           ++|...++.+.|.|.=.++++++.||++|+|
T Consensus       224 -----eGHt~Nvs~v~fhp~lpiiisgsEDGTvriW  254 (794)
T KOG0276|consen  224 -----EGHTNNVSFVFFHPELPIIISGSEDGTVRIW  254 (794)
T ss_pred             -----hcccccceEEEecCCCcEEEEecCCccEEEe
Confidence                 7899999999999998899999999999999

>KOG0640|consensus

Probab=99.90  E-value=1.5e-21  Score=143.63  Aligned_cols=277  Identities=12%  Similarity=0.205  Sum_probs=200.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC-----------------C---------CcCCCCcceEEcCCCcEEEEeC
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----------------P---------GCFTWPRGIAVGPDNSIVVADS   74 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------~---------~~~~~~~~v~~~~~g~~~~~~~   74 (319)
                      .+.+.+.+|+|+|.+.++++.+-.+++.+..                 .         .|.+.+..+.|.|...++++++
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s  191 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS  191 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence            4567788899999999999877665544321                 1         2447889999999999999999


Q ss_pred             CCCeEEEecccccccccee------eEEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCce
Q psy13998         75 SNHRVQVCFPHFDLKTNCV------FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (319)
                      .|++|++    ||......      +.....+.++.|+|.|..++.+.....+++||.+.-....-.  .....|...++
T Consensus       192 rD~tvKl----FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa--nPd~qht~ai~  265 (430)
T KOG0640|consen  192 RDNTVKL----FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA--NPDDQHTGAIT  265 (430)
T ss_pred             CCCeEEE----EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec--Cccccccccee
Confidence            9999999    88753221      123346789999999999999998899999996543322211  12255677889


Q ss_pred             eEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-
Q psy13998        149 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-  227 (319)
Q Consensus       149 ~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-  227 (319)
                      .+..++.+++|++++.||.|++||--.      ++++..++..    .....+.+..|..+++++++.+.|..+++|.. 
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS------~rCv~t~~~A----H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVS------NRCVRTIGNA----HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeecccc------HHHHHHHHhh----cCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            999999999999999999999998542      2555555321    11234567788899999999999999999995 


Q ss_pred             CCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        228 NGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      +|+.+..+...+.... ...-+...|+-. ..++.-+-..+.+.-|| .++..+..+.     .+|...+..+.-+|.+.
T Consensus       336 t~R~l~~YtGAg~tgr-q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-----lgHn~a~R~i~HSP~~p  409 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGR-QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-----LGHNGAVRWIVHSPVEP  409 (430)
T ss_pred             CCceEEEEecCCcccc-hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-----cCCCCCceEEEeCCCCC
Confidence            6777777643322111 111222334332 34555666778899999 4444433332     47888899999999999


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      .+++++.|.++|.|
T Consensus       410 ~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  410 AFMTCSDDFRARFW  423 (430)
T ss_pred             ceeeecccceeeee
Confidence            99999999999998

>KOG0772|consensus

Probab=99.89  E-value=2e-21  Score=151.96  Aligned_cols=275  Identities=10%  Similarity=0.092  Sum_probs=196.6

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC-------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~   87 (319)
                      ...|.++++.|.|..+.+++.++.+..|+-+             +..-+.+..+.+++.|..+++.++....++    +|
T Consensus       167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl----~D  242 (641)
T KOG0772|consen  167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL----LD  242 (641)
T ss_pred             ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE----Ec
Confidence            5678999999999999999999998888432             334467899999999997777777788888    66


Q ss_pred             cccceeeE----------------EecCceeeEEcCCC-cEEEEcCCCCeEEEEcCC-C-cEEEEecCCCccCCCCCCce
Q psy13998         88 LKTNCVFL----------------AFTWPRGIAVGPDN-SIVVADSSNHRVQVFQSD-G-TFVGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        88 ~~~~~~~~----------------~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  148 (319)
                      ........                |....++.+|+|.. ..|++++.|+++++|+.+ . +....+.... ..+....|.
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-~~g~Rv~~t  321 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-AGGKRVPVT  321 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-CCCcccCce
Confidence            64332222                44466888999976 589999999999999933 3 3333333221 123335678


Q ss_pred             eEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC--CCceeEEEcCCCcEEEEeCCCCeEEEEe
Q psy13998        149 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL--EHPHYIAVSNTNRVIVSDSNNHRVQIFD  226 (319)
Q Consensus       149 ~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~v~~~~~~~i~~~~  226 (319)
                      ..+|+++|+++++++.||.|.+|+..+....+.-. +.        ..|.  ..+++++|+++|+++++-+.++.+++||
T Consensus       322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~-vk--------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK-VK--------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             eeecCCCcchhhhcccCCceeeeecCCcccccceE-ee--------eccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            89999999999999999999999986532221111 11        2233  3689999999999999999999999999


Q ss_pred             CCC--CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC------CCCEEEEEcC-CCceEEeecccCCCCCCCCCcce
Q psy13998        227 VNG--RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS------GNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       227 ~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      ...  +.+....  +  ......-+..+|+|+.++++++.      ..+.+.+|+. .-..+..+      ......+..
T Consensus       393 Lrq~kkpL~~~t--g--L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki------~i~~aSvv~  462 (641)
T KOG0772|consen  393 LRQFKKPLNVRT--G--LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI------DISTASVVR  462 (641)
T ss_pred             ccccccchhhhc--C--CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe------cCCCceEEE
Confidence            753  2222221  0  01111235789999999999886      3568999994 44555555      233456778


Q ss_pred             EEEccCCcEEEEeCCCCeEEeC
Q psy13998        298 VAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.|+|.=+.+++++.||.++||
T Consensus       463 ~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  463 CLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             EeecchhhheeeecCCCceEEE
Confidence            8999987777778888998875

>KOG1407|consensus

Probab=99.89  E-value=2.6e-20  Score=133.76  Aligned_cols=254  Identities=13%  Similarity=0.101  Sum_probs=194.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCC----------CCCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS----------EPGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      .+.+.+++|..+|..|+.++.+.+...|..          ..||-..+..++++| +..++++++++.+|++    |+..
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~----wd~r   95 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI----WDIR   95 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE----EEec
Confidence            678899999999999999988777665533          356667888999998 5569999999999999    9988


Q ss_pred             cceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         90 TNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        90 ~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      +.+......   .-.-++++|+|+.++++..+..|..+| .+.+......       ....++.+++..++.+|+...+.
T Consensus        96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-------~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-------FKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-------ccceeeeeeecCCCCEEEEecCC
Confidence            777665443   345689999999999999999999998 5555444432       22455778898888888888888


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC-EEEEeCCCCCCccc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-VITSFGSEGSEEGQ  244 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~  244 (319)
                      |.|.+...-.      -+.+..+      ..|...-.++.|+|+|+++++++.|..+.+||.+.. ..+.+      ...
T Consensus       169 G~v~ILsyps------Lkpv~si------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i------sRl  230 (313)
T KOG1407|consen  169 GCVEILSYPS------LKPVQSI------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI------SRL  230 (313)
T ss_pred             ceEEEEeccc------ccccccc------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee------ccc
Confidence            9888765431      1233332      556667788999999999999999999999998643 33444      223


Q ss_pred             ccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        245 LKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       245 ~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      -..++.|.|+-+|+++++++.|..|-+-+ .+|..+..+       ........++|+|...+++-+
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-------~~~~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-------PCEGPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-------eccCCceeEEecCCCceeeEE
Confidence            33467899999999999999999998877 789888887       344567889999998765433

>KOG0310|consensus

Probab=99.89  E-value=1.5e-20  Score=145.89  Aligned_cols=261  Identities=14%  Similarity=0.217  Sum_probs=189.8

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC---CC----c-CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE---PG----C-FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~----~-~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      .+.|..+.|+|...+-..-.......+++..   .-    . ...+.++.|-.||++++++...|.|++    ||..+.-
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~v----fD~k~r~  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKV----FDMKSRV  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEE----eccccHH
Confidence            5789999999966652211111122222111   11    1 257899999999999999999999999    9965422


Q ss_pred             eeE----EecCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEE-EecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC
Q psy13998         93 VFL----AFTWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVG-KFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN  165 (319)
Q Consensus        93 ~~~----~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~  165 (319)
                      .+.    +-..++.+.|+|++ .++++++.++.++.||.++..+. .+      .+|..++.+.+++| ++.++++++.|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l------~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL------SGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe------cCCcceeEeeccccCCCeEEEecCCC
Confidence            222    22345677888875 58888888889999997766653 33      57888999999998 56799999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-C-CEEEEeCCCCCCcc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-G-RVITSFGSEGSEEG  243 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~-~~~~~~~~~~~~~~  243 (319)
                      +.|++||.+..     +..+..+       .+...+..+.+-|.|.+++++++ +.+++||.. | +.+...      ..
T Consensus       176 g~vrl~DtR~~-----~~~v~el-------nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~------~~  236 (487)
T KOG0310|consen  176 GKVRLWDTRSL-----TSRVVEL-------NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSM------FN  236 (487)
T ss_pred             ceEEEEEeccC-----CceeEEe-------cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhh------hc
Confidence            99999998742     1222222       34455667778888888888764 589999964 4 444443      34


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      |...++++++..++.-+++++.|+.|.+|+ .+-+.+..+       .....+.+|+++||+..++.|..||.+.
T Consensus       237 H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-------~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  237 HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-------KYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-------ecccceeeEEecCCCceEEEecccceee
Confidence            667799999999999999999999999999 455666666       3445789999999999999999888764

>KOG0275|consensus

Probab=99.89  E-value=2.2e-21  Score=143.71  Aligned_cols=239  Identities=17%  Similarity=0.248  Sum_probs=186.9

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE------------ecCceeeEEcCCCcEEEEcCCCCe
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------------FTWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      |....|.+..|+|||+++++++-||-|.+    |+..+++....            -..+.++.|+.|..++++++.||.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEV----Wny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEV----WNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeee----ehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence            34578899999999999999999999999    88776554331            135689999999999999999999


Q ss_pred             EEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        121 VQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       121 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      |++|. .+|..++++.     ..|...++++.|+.|+..+++++.|..+++.-+.      .|+.+..+      .+|..
T Consensus       287 IKvWri~tG~ClRrFd-----rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK------SGK~LKEf------rGHsS  349 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFD-----RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK------SGKCLKEF------RGHSS  349 (508)
T ss_pred             EEEEEEecchHHHHhh-----hhhccCeeEEEEccCcchhhcccccceEEEeccc------cchhHHHh------cCccc
Confidence            99999 7888888875     4677889999999999999999999999988766      45666666      56777


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCCCc
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~g~  277 (319)
                      .++...+.++|..+++++.++.|++|+. +++.+.++...+    .-..+..+..-|.. .-++.+...++|++.+..|+
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ  425 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG----TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ  425 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC----CcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence            8888999999999999999999999995 555555554322    22345666666664 45666677899999999999


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++.+.....   ....--+.+++|.|.++.+.+.|+.+..|
T Consensus       426 vVrsfsSGkR---EgGdFi~~~lSpkGewiYcigED~vlYCF  464 (508)
T KOG0275|consen  426 VVRSFSSGKR---EGGDFINAILSPKGEWIYCIGEDGVLYCF  464 (508)
T ss_pred             EEeeeccCCc---cCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence            9999853221   11223445788999988888888877654

>KOG0772|consensus

Probab=99.89  E-value=1.6e-21  Score=152.47  Aligned_cols=244  Identities=12%  Similarity=0.119  Sum_probs=176.0

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc----eeeEE-----ecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN----CVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~-----~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      ++-..|.+++++|.|-.|++++-|..|++    ||....    ..+..     -..+..+.+++.|..+++.++....++
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~----wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKF----WDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEE----EecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            45577899999999999999999999999    776421    11111     225688999999988887788889999


Q ss_pred             EcCCCcEEEEecCC-------CccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        124 FQSDGTFVGKFGSM-------GNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       124 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      +|.+|..+.++...       .+..+|...+++-+|+|. ...|++++.|+++++|+.+....  ..+++.....    .
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--q~qVik~k~~----~  314 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--QLQVIKTKPA----G  314 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--heeEEeeccC----C
Confidence            99999877665332       245788888999999995 47899999999999999874221  1122222211    1


Q ss_pred             CCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccc--cCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQL--KFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      +....++..+|+++|.++++++.+|.|.+|+..+..++......  .+|.  ..+++|.|+++|+++++-+.|+++.+||
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--eccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            22345678899999999999999999999996443322111111  2333  3789999999999999999999999999


Q ss_pred             CC--CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        274 PD--GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       274 ~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      ..  .+.+.....    ......-+.++|+|+.++++++..
T Consensus       393 Lrq~kkpL~~~tg----L~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  393 LRQFKKPLNVRTG----LPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ccccccchhhhcC----CCccCCCCccccCCCceEEEeccc
Confidence            53  233333311    122334577899999999998864

>KOG0641|consensus

Probab=99.88  E-value=6.7e-20  Score=129.21  Aligned_cols=284  Identities=13%  Similarity=0.109  Sum_probs=197.3

Q ss_pred             hhhhhhh-cccccccCCCccchhccccceeeeec--ccC---------------------CCCCcCCCCcceEEcCCCcE
Q psy13998         14 FLLQTLL-VSGIGQVGTTPRSQYLQKRRLQFKIG--SRG---------------------SEPGCFTWPRGIAVGPDNSI   69 (319)
Q Consensus        14 ~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~--~~~---------------------~~~~~~~~~~~v~~~~~g~~   69 (319)
                      .++..+. ...|.+++|+|.+.+.+.++...+|.  .+-                     ...-|...+++.+|+|.|++
T Consensus        24 ~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel  103 (350)
T KOG0641|consen   24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL  103 (350)
T ss_pred             EEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence            3343443 56799999999999988876555432  221                     01224467899999999999


Q ss_pred             EEEeCCCCeEEEeccccccccceeeE-------EecCceeeEEcCC----CcEEEEc-CCCCeEEEEc-CCCcEEEEecC
Q psy13998         70 VVADSSNHRVQVCFPHFDLKTNCVFL-------AFTWPRGIAVGPD----NSIVVAD-SSNHRVQVFQ-SDGTFVGKFGS  136 (319)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~----g~~~~~~-~~~~~i~~~~-~~~~~~~~~~~  136 (319)
                      +++++.|.+|++.-  |+.++.....       +-..+..++|..+    +.+++++ .++..|++-| ..|.....+  
T Consensus       104 iatgsndk~ik~l~--fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~--  179 (350)
T KOG0641|consen  104 IATGSNDKTIKVLP--FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL--  179 (350)
T ss_pred             EEecCCCceEEEEe--cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee--
Confidence            99999999998732  4444332221       2235677887543    3466654 3566788777 666666555  


Q ss_pred             CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC-cCCCCCCceeEEEcCCCcEEEE
Q psy13998        137 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN-KAGQLEHPHYIAVSNTNRVIVS  215 (319)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v~  215 (319)
                          .+|...+.++ ++-+|-+|++++.|.+|+.||++-.      ..+......-. .--.......++++|.|+++++
T Consensus       180 ----sghtghilal-yswn~~m~~sgsqdktirfwdlrv~------~~v~~l~~~~~~~glessavaav~vdpsgrll~s  248 (350)
T KOG0641|consen  180 ----SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN------SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS  248 (350)
T ss_pred             ----cCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc------ceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence                4555544433 2347889999999999999998732      22222211100 0112245678999999999999


Q ss_pred             eCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCC
Q psy13998        216 DSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKG  294 (319)
Q Consensus       216 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~  294 (319)
                      +..+....+||.. ++.+..+      ..+...+.++.|+|.-.++++++.|..|++-|..|.+-.++..... ..|...
T Consensus       249 g~~dssc~lydirg~r~iq~f------~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv-~ehkdk  321 (350)
T KOG0641|consen  249 GHADSSCMLYDIRGGRMIQRF------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV-AEHKDK  321 (350)
T ss_pred             ccCCCceEEEEeeCCceeeee------CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE-EeccCc
Confidence            9999999999965 5677777      6677788999999998999999999999999988865444321110 235556


Q ss_pred             cceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        295 LEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       295 ~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +-.+.|.|..--+++.+.|.++.+|
T Consensus       322 ~i~~rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             eEEEEecCccceeeeccCcceEEEe
Confidence            7778899988789999999999988

>KOG2096|consensus

Probab=99.88  E-value=1.7e-20  Score=138.54  Aligned_cols=278  Identities=16%  Similarity=0.199  Sum_probs=195.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC------------CcCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~   87 (319)
                      ...|..++||.+|.+|++...+..+..|....            -.++.|+.+.|+||-+ ++++.....++++    |.
T Consensus        86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v----yk  161 (420)
T KOG2096|consen   86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV----YK  161 (420)
T ss_pred             CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE----EE
Confidence            46789999999999999999888887775432            2357899999999987 4555556678888    55


Q ss_pred             ccc--ceeeE---------Eec-----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEE
Q psy13998         88 LKT--NCVFL---------AFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        88 ~~~--~~~~~---------~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                      +..  .+...         ++.     .+..+-+..++.++.+++.+..|.+|+..|+.+..+...      ...-+..+
T Consensus       162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn------q~~n~~aa  235 (420)
T KOG2096|consen  162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN------QSSNYDAA  235 (420)
T ss_pred             eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc------ccccccee
Confidence            432  22211         111     123344444567888999999999999889998888543      23336788


Q ss_pred             EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE
Q psy13998        152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  231 (319)
Q Consensus       152 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~  231 (319)
                      ++|+|+++++++...-|++|.+   .+..+|++...... -...+|......++|+++.+..++.+.||.+++||.+-+.
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~---~f~kdG~fqev~rv-f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEP---IFTKDGTFQEVKRV-FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEE---EeccCcchhhhhhh-heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence            9999999999888888999976   34445544321111 1125677788899999999999999999999999976322


Q ss_pred             EEE-----eCCC-CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        232 ITS-----FGSE-GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       232 ~~~-----~~~~-~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                      ...     +... .........|..+.++|+|..++...+ ..|.+|. .+|+.+-.+.     ..|...+.+|+|+++|
T Consensus       312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e-----~~h~~~Is~is~~~~g  385 (420)
T KOG2096|consen  312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELE-----DIHSTTISSISYSSDG  385 (420)
T ss_pred             ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHH-----HhhcCceeeEEecCCC
Confidence            111     1000 111223456789999999998888654 5788888 5677666654     4577889999999999


Q ss_pred             cEEEEeCCCCeEEeC
Q psy13998        305 NILVCDRENHRIQVF  319 (319)
Q Consensus       305 ~~~v~~~~~~~i~v~  319 (319)
                      +++++.+ |+.++++
T Consensus       386 ~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  386 KYIATCG-DRYVRVI  399 (420)
T ss_pred             cEEeeec-ceeeeee
Confidence            9888775 4556653

>KOG0288|consensus

Probab=99.88  E-value=7.8e-21  Score=144.63  Aligned_cols=267  Identities=13%  Similarity=0.141  Sum_probs=197.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC----------CcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      ...+..+.|-++...|+++..+..+++|....          |.+..+..+.++++++.+++.+.|+.+++    |+...
T Consensus       175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~----Wnvd~  250 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL----WNVDS  250 (459)
T ss_pred             ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee----eeccc
Confidence            56788888999989999999999999886554          34567899999999999999999999999    88765


Q ss_pred             ceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         91 NCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        91 ~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      .....    |-..+.++.+.......++++.+.+|+.||. .....+.+.       ......+|+..  ...++++..|
T Consensus       251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-------~~S~cnDI~~~--~~~~~SgH~D  321 (459)
T KOG0288|consen  251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-------PGSQCNDIVCS--ISDVISGHFD  321 (459)
T ss_pred             hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-------ccccccceEec--ceeeeecccc
Confidence            44433    3445666766655445899999999999994 444444331       12344666655  5678889999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE-EEEeCCCCCCccc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV-ITSFGSEGSEEGQ  244 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~  244 (319)
                      ++|+.||.++.      ......+.       ...++++.+++++.-+.+.+.+..+.++|..+.. ...+...+...+ 
T Consensus       322 kkvRfwD~Rs~------~~~~sv~~-------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a-  387 (459)
T KOG0288|consen  322 KKVRFWDIRSA------DKTRSVPL-------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA-  387 (459)
T ss_pred             cceEEEeccCC------ceeeEeec-------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc-
Confidence            99999998753      33333221       2356788999999877777889999999976544 444433332222 


Q ss_pred             ccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        245 LKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       245 ~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ...+.++|+|++.++++++.|+.|++|+. .|+..+....    ......+.+++|+|.|..+++.+.+..+.+|
T Consensus       388 -sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~----s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  388 -SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL----STSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc----CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence             23578999999999999999999999995 5666555532    1122268999999999999999999999998

>KOG0281|consensus

Probab=99.88  E-value=6.2e-22  Score=147.76  Aligned_cols=226  Identities=15%  Similarity=0.240  Sum_probs=172.1

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-  125 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-  125 (319)
                      .......++++.++  ...++++..|++|.+    ||..+-....    |...+.++.+  +.+++++++.|.+|++|| 
T Consensus       193 ~Se~skgVYClQYD--D~kiVSGlrDnTiki----WD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv  264 (499)
T KOG0281|consen  193 RSENSKGVYCLQYD--DEKIVSGLRDNTIKI----WDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDV  264 (499)
T ss_pred             CcccCCceEEEEec--chhhhcccccCceEE----eccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEec
Confidence            34445778888885  456899999999999    8886655444    3335555555  567999999999999999 


Q ss_pred             CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      .+|+++..+      ..|...+.++.|+  ..+.++++.|.++.+|++....   +-.+...      ..+|....+.+.
T Consensus       265 ~tge~l~tl------ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps---~it~rrV------LvGHrAaVNvVd  327 (499)
T KOG0281|consen  265 NTGEPLNTL------IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT---DITLRRV------LVGHRAAVNVVD  327 (499)
T ss_pred             cCCchhhHH------hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch---HHHHHHH------Hhhhhhheeeec
Confidence            788888877      5677778888876  4688999999999999987421   0011111      134555556565


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeec
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFG  283 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~  283 (319)
                      ++  .+++++++++.+|++|+. +++.++.+      .+|...+.++.+  .|+++|+++.|++|++|+ ..|..++.+ 
T Consensus       328 fd--~kyIVsASgDRTikvW~~st~efvRtl------~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-  396 (499)
T KOG0281|consen  328 FD--DKYIVSASGDRTIKVWSTSTCEFVRTL------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-  396 (499)
T ss_pred             cc--cceEEEecCCceEEEEeccceeeehhh------hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH-
Confidence            54  469999999999999996 56777777      566544444433  579999999999999999 578888888 


Q ss_pred             ccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                           ++|..-+.++.|+  .+-+|+|..||+|+||
T Consensus       397 -----eGHEeLvRciRFd--~krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  397 -----EGHEELVRCIRFD--NKRIVSGAYDGKIKVW  425 (499)
T ss_pred             -----hchHHhhhheeec--CceeeeccccceEEEE
Confidence                 7899999999996  3679999999999998

>KOG0268|consensus

Probab=99.88  E-value=2.8e-21  Score=144.78  Aligned_cols=261  Identities=11%  Similarity=0.174  Sum_probs=192.7

Q ss_pred             cccccccCCCccc-hhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc-
Q psy13998         21 VSGIGQVGTTPRS-QYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT-   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~-   90 (319)
                      .++|.+++-+|.. ..+++++.++.+.+|+..        ..|.+.|.+|+++.  ..+++.+.|.+|+.    |.... 
T Consensus        66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~----wk~~~~  139 (433)
T KOG0268|consen   66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ----WKIDGP  139 (433)
T ss_pred             ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee----eeccCC
Confidence            6889999999877 568899999999999765        35667899999986  66788889999999    66532 


Q ss_pred             -ceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCE
Q psy13998         91 -NCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHR  167 (319)
Q Consensus        91 -~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~  167 (319)
                       ...+..-....++..+..+..+++++.  .|.+||. -..++..+.      -....+.++.++|- -.++.++..|+.
T Consensus       140 p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms------wG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  140 PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS------WGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             cceeeeccccccccccccccccccccCc--eeeecccccCCccceee------cCCCceeEEecCCCcchheeeeccCCc
Confidence             111222234456666666678887754  4899993 444555552      22345688889984 477788889999


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC--CEEEEeCCCCCCcccc
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG--RVITSFGSEGSEEGQL  245 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~  245 (319)
                      |.+||++..      +++....       ..-.+++|+|+|++..|+++..|..++.||+..  ..+...      .+|.
T Consensus       212 IvLyD~R~~------~Pl~KVi-------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~------~dhv  272 (433)
T KOG0268|consen  212 IVLYDLRQA------SPLKKVI-------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH------KDHV  272 (433)
T ss_pred             eEEEecccC------Cccceee-------eeccccceecCccccceeeccccccceehhhhhhcccchhh------cccc
Confidence            999999742      3322221       112457799999888999999999999999642  333333      5677


Q ss_pred             cCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+.+++|+|.|+-+|+++-|.+|++|..+ +...-.+-     ...+..+.++.|+-|.+++++|+.|+.||+|
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-----tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-----TKRMQHVFCVKYSMDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh-----HhhhheeeEEEEeccccEEEecCCCcceeee
Confidence            788999999999999999999999999954 33222221     2456679999999999999999999999999

>KOG0306|consensus

Probab=99.88  E-value=3.1e-20  Score=151.50  Aligned_cols=244  Identities=14%  Similarity=0.225  Sum_probs=191.5

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec--CceeeEEcCCCcEEEEcCCCCeEEEEc-CCC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDG  128 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~  128 (319)
                      .||...|.+++++.+..+++++ .++.+.+    |+.++.+.+..+.  ...+..|-|.++.++.+..+|.+.+|| ...
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sg-a~~Siki----Wn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASG-AGESIKI----WNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             ccchhheeEEEeecCceeeeec-CCCcEEE----EEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            5788899999999876666554 4679999    9999888888765  556778889889999999999999999 555


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC-CcCCCCCCceeEEEc
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-NKAGQLEHPHYIAVS  207 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  207 (319)
                      ..+..+      ..|...+..++..||++-+++++.|++|++|+..-.. ...|.....+.... ....-...+.++.++
T Consensus       445 ~l~Eti------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~-~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  445 SLVETI------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV-SVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             hhhhhh------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe-ccCcccceeeeeccceEEeccccEEEEEEc
Confidence            555555      5677888999999999999999999999999875211 11122111111110 011223456889999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeeccc
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCW  285 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~  285 (319)
                      |||++++++--|+++.+|-.+. +....+      .+|.-++.+|.++||+.++++++.|..|.+|-.+ |..-+.+   
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsL------YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~---  588 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSL------YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF---  588 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeee------cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh---
Confidence            9999999999999999998765 344444      6777788999999999999999999999999965 5555555   


Q ss_pred             CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        286 GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                         .+|...+.++.|-|+..++.+++.|+.|+-|
T Consensus       589 ---fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  589 ---FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             ---hcccCceeEEEEcccceeEEEecCcceEEee
Confidence               5788899999999998999999999999988

>PTZ00421 coronin; Provisional

Probab=99.87  E-value=5.7e-19  Score=146.30  Aligned_cols=193  Identities=12%  Similarity=0.155  Sum_probs=136.7

Q ss_pred             cCceeeEEcC-CCcEEEEcCCCCeEEEEcC-CCc-------EEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCE
Q psy13998         98 TWPRGIAVGP-DNSIVVADSSNHRVQVFQS-DGT-------FVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHR  167 (319)
Q Consensus        98 ~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~  167 (319)
                      ..+.+++|+| +++++++++.|+.|++|+. ++.       .+..+      .+|...+..++|+|++ +++++++.|+.
T Consensus        76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L------~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL------QGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe------cCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3568999999 7889999999999999994 332       22333      4566788999999975 78999999999


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~  246 (319)
                      |++||+...      +.+..+      ..+...+.+++++++|.++++++.++.|++||+ +++.+..+      ..+..
T Consensus       150 VrIWDl~tg------~~~~~l------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl------~~H~~  211 (493)
T PTZ00421        150 VNVWDVERG------KAVEVI------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV------EAHAS  211 (493)
T ss_pred             EEEEECCCC------eEEEEE------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE------ecCCC
Confidence            999998743      333333      334556789999999999999999999999996 56666655      22322


Q ss_pred             -CcceEEEcCCCcEEEEeC----CCCEEEEEcCC--CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC-CCCeEEe
Q psy13998        247 -FPRGVAVDDQGYISVGDS----GNNRIQIFTPD--GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR-ENHRIQV  318 (319)
Q Consensus       247 -~~~~i~~~~~g~~~v~~~----~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~-~~~~i~v  318 (319)
                       ....+.+.+++..+++.+    .++.|.+||..  .+.+....     ......+....++++++++++++ .|+.|++
T Consensus       212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-----~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri  286 (493)
T PTZ00421        212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-----LDQSSALFIPFFDEDTNLLYIGSKGEGNIRC  286 (493)
T ss_pred             CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----cCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence             233567777766655543    47899999953  22333321     11222344556889998666655 6999998


Q ss_pred             C
Q psy13998        319 F  319 (319)
Q Consensus       319 ~  319 (319)
                      |
T Consensus       287 w  287 (493)
T PTZ00421        287 F  287 (493)
T ss_pred             E
Confidence            8

>KOG0319|consensus

Probab=99.87  E-value=2.2e-20  Score=151.99  Aligned_cols=226  Identities=11%  Similarity=0.179  Sum_probs=189.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCC------------CCCcCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS------------EPGCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~   87 (319)
                      ...|.++.....+.++++++.+.++-.|..            ..||-+.+.+|+++..+. +|++.+.|.++++    |+
T Consensus       365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~----W~  440 (775)
T KOG0319|consen  365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL----WD  440 (775)
T ss_pred             hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE----ec
Confidence            566777776666788999999988777722            357888999999987664 8999999999999    77


Q ss_pred             cccceeeE-------------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998         88 LKTNCVFL-------------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS  153 (319)
Q Consensus        88 ~~~~~~~~-------------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (319)
                      +...+...             |-..+++++++|+.+++++++.|++.++|+ ++......+      .+|...+.++.|+
T Consensus       441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL------sGH~RGvw~V~Fs  514 (775)
T KOG0319|consen  441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL------SGHTRGVWCVSFS  514 (775)
T ss_pred             CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe------eCCccceEEEEec
Confidence            65411111             344789999999999999999999999999 667777777      7888999999999


Q ss_pred             CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEE
Q psy13998        154 NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVI  232 (319)
Q Consensus       154 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~  232 (319)
                      +.+.++++++.|.+|++|.++.      ..++.++      .+|...+....|-.+|..+++++.+|-|++|+. ++...
T Consensus       515 ~~dq~laT~SgD~TvKIW~is~------fSClkT~------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  515 KNDQLLATCSGDKTVKIWSIST------FSCLKTF------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             cccceeEeccCCceEEEEEecc------ceeeeee------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence            9999999999999999999984      3677777      566677777788888999999999999999995 56667


Q ss_pred             EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ..+      ..|...+.+++.++.+.++++++.|++|.+|..
T Consensus       583 ~tl------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  583 MTL------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             hhh------hhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            777      788889999999999999999999999999974

>KOG2055|consensus

Probab=99.87  E-value=5e-20  Score=142.23  Aligned_cols=267  Identities=15%  Similarity=0.224  Sum_probs=198.1

Q ss_pred             cccccccCCCccchhccccceeeeeccc---CCCCCc-----C--CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSR---GSEPGC-----F--TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~-----~--~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      ..+|.++.|+|....|.++.++..+.++   |.....     +  ..+...+|.|+|+ .+++++....++.    ||+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys----yDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS----YDLE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE----eecc
Confidence            5789999999999999999887764443   332221     1  3557789999999 7888888888888    9987


Q ss_pred             cceeeEEec--------CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE
Q psy13998         90 TNCVFLAFT--------WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV  160 (319)
Q Consensus        90 ~~~~~~~~~--------~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~  160 (319)
                      +.+... +.        ......+++++++++..+..+.|.+.. .+++.+..+...       ..+.+++|+.+++.++
T Consensus       289 ~ak~~k-~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-------G~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  289 TAKVTK-LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-------GVVSDFTFSSDSKELL  360 (514)
T ss_pred             cccccc-ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-------cEEeeEEEecCCcEEE
Confidence            654432 22        334567889999988899999999998 666666666433       4568899999998888


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC-------EEE
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-------VIT  233 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~-------~~~  233 (319)
                      +.+.+|.|.+||++..      .++.++...+..     +-+.++.++++.++++++..|.|-+||.+..       +++
T Consensus       361 ~~~~~GeV~v~nl~~~------~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik  429 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQN------SCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK  429 (514)
T ss_pred             EEcCCceEEEEecCCc------ceEEEEeecCcc-----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence            8888999999999854      566666443332     3456888899999999999999999995432       222


Q ss_pred             EeCCCCCCcccccCcceEEEcCCCcEEEEeC--CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDS--GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      .+      ..-...+..|.|+++.++++.++  ..+.+++.. +.-.....+   +........+++|+|+|.|.+++.+
T Consensus       430 ~~------dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf---P~~n~~vg~vtc~aFSP~sG~lAvG  500 (514)
T KOG2055|consen  430 TV------DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF---PTSNTKVGHVTCMAFSPNSGYLAVG  500 (514)
T ss_pred             hh------hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccC---CCCCCcccceEEEEecCCCceEEee
Confidence            22      23334578999999999877666  466788777 444333333   3334556789999999999999999


Q ss_pred             CCCCeEEeC
Q psy13998        311 RENHRIQVF  319 (319)
Q Consensus       311 ~~~~~i~v~  319 (319)
                      ...+++.+|
T Consensus       501 Ne~grv~l~  509 (514)
T KOG2055|consen  501 NEAGRVHLF  509 (514)
T ss_pred             cCCCceeeE
Confidence            999999988

>KOG0313|consensus

Probab=99.87  E-value=9.5e-20  Score=137.38  Aligned_cols=266  Identities=14%  Similarity=0.189  Sum_probs=190.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC-------CCcCCCCcceEEcC---CCcEEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------PGCFTWPRGIAVGP---DNSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~---~g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      .+=|.++..+  +..+.++.++....+|...       .||-..+..+++-.   ....|++++.|.+++.    |..+.
T Consensus       105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L----w~~~~  178 (423)
T KOG0313|consen  105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL----WKWNV  178 (423)
T ss_pred             hhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE----EEecC
Confidence            3445555544  5667778888777777543       45556666555532   2237999999999999    55433


Q ss_pred             ceee--------EEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEec---C-----------------CCccCC
Q psy13998         91 NCVF--------LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFG---S-----------------MGNKAG  142 (319)
Q Consensus        91 ~~~~--------~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~---~-----------------~~~~~~  142 (319)
                      ....        .|-..+.++...++|..+++++.|..+.+|+........+.   .                 .-...+
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            3222        24557788999999999999999999999992111111000   0                 001256


Q ss_pred             CCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeE
Q psy13998        143 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV  222 (319)
Q Consensus       143 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i  222 (319)
                      |...+.++.|++ ....++++.|.+|+.||+...      .......       ......++...+..+++++++.+..+
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg------~~~~~~~-------~~ksl~~i~~~~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG------GLKSTLT-------TNKSLNCISYSPLSKLLASGSSDRHI  324 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecc------cceeeee-------cCcceeEeecccccceeeecCCCCce
Confidence            777888899987 566778899999999998742      2222221       11234678888988999999999999


Q ss_pred             EEEeCC---CCE-EEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEc-CCCc-eEEeecccCCCCCCCCCc
Q psy13998        223 QIFDVN---GRV-ITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFT-PDGQ-FLRAFGCWGSGDGEFKGL  295 (319)
Q Consensus       223 ~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~~~~~  295 (319)
                      ++||+.   |.. ..++      .+|.+++.++.++|.. .+|++++.|+++++|| ...+ .+..+      .+|...+
T Consensus       325 rl~DPR~~~gs~v~~s~------~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI------~~h~DKv  392 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSL------IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI------AGHNDKV  392 (423)
T ss_pred             eecCCCCCCCceeEEee------ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee------ccCCceE
Confidence            999963   333 3445      6788899999999986 6899999999999999 3333 67777      6788889


Q ss_pred             ceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        296 EGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       296 ~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++.|. ++.++++++.|+.|++|
T Consensus       393 l~vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  393 LSVDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             EEEecc-CCceEEeccCcceEEEe
Confidence            989887 56799999999999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.87  E-value=4e-19  Score=136.57  Aligned_cols=224  Identities=29%  Similarity=0.401  Sum_probs=157.7

Q ss_pred             CcceEEcC-CCcEEEEeCCCCeEEEeccccccccceee-EEecCceeeEEc-CCCcEEEEcCCCCeEEEEcC-CCcEEEE
Q psy13998         58 PRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVF-LAFTWPRGIAVG-PDNSIVVADSSNHRVQVFQS-DGTFVGK  133 (319)
Q Consensus        58 ~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~-~~~~~~~  133 (319)
                      +.+++|++ +|.+|+++...+.|..    ++..+.... .....|.++++. +++.+|++...  .+.++|. +++....
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~----~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYR----VDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEE----EETTTTEEEEEESSSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEE----EECCCCeEEEEecCCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEE
Confidence            46789998 8999999999999999    888765543 355679999999 78888888753  4566684 4443333


Q ss_pred             ecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      ..... .......|++++++++|++|++....        +.+..++.+++.       ...       ......|++|+
T Consensus        76 ~~~~~-~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-------~~~-------~~~~~~pNGi~  140 (246)
T PF08450_consen   76 ADLPD-GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-------TVV-------ADGLGFPNGIA  140 (246)
T ss_dssp             EEEET-TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEE-------EEE-------EEEESSEEEEE
T ss_pred             eeccC-CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeE-------EEE-------ecCcccccceE
Confidence            32210 11245688999999999999997643        568888776421       111       12346789999


Q ss_pred             EcCCCc-EEEEeCCCCeEEEEeCC--CC-E--EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceE
Q psy13998        206 VSNTNR-VIVSDSNNHRVQIFDVN--GR-V--ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL  279 (319)
Q Consensus       206 ~~~~g~-~~v~~~~~~~i~~~~~~--~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~  279 (319)
                      ++++++ +|++++..++|+.|+.+  +. .  ...+...   ......|.+++++++|++|++....+.|.+++++|+.+
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~  217 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF---PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLL  217 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE----SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEE
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeeeeEEEc---CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEE
Confidence            999985 78899999999999963  33 1  1112100   11223589999999999999999999999999999999


Q ss_pred             EeecccCCCCCCCCCcceEEEc-cCC-cEEEEeC
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVM-SNG-NILVCDR  311 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~-~~g-~~~v~~~  311 (319)
                      ..+.      .....|++++|. ++. .+|++..
T Consensus       218 ~~i~------~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  218 REIE------LPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEE-------SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEEc------CCCCCEEEEEEECCCCCEEEEEeC
Confidence            8884      334589999994 554 4888764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0278|consensus

Probab=99.87  E-value=1.1e-20  Score=135.01  Aligned_cols=224  Identities=13%  Similarity=0.200  Sum_probs=172.8

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC-------cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG-------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ...|.......+....++++.+.+.+.|+...|       |..-+..++|+.|.+.+++++.+.-+++    |+++....
T Consensus        59 kgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrv----fdln~p~A  134 (334)
T KOG0278|consen   59 KGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRV----FDLNRPKA  134 (334)
T ss_pred             CcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhh----hhccCCCC
Confidence            345555556666667778888999999988776       3467889999999999999999999999    88864332


Q ss_pred             eE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         94 FL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        94 ~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      ..     +...+..+.|....+-+++...++.|++|| .+|..++.+...       ..+.++.++++|+++.+. ..+.
T Consensus       135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG~ilTia-~gss  206 (334)
T KOG0278|consen  135 PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDGRILTIA-YGSS  206 (334)
T ss_pred             CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCCCEEEEe-cCce
Confidence            11     334566777777777777778899999999 889888887432       567899999999877665 4578


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCccccc
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~  246 (319)
                      |..||...-      .++..+.       ....+.+..+.|+..+||++..+..++.|| .+|..+..+     ..+++.
T Consensus       207 V~Fwdaksf------~~lKs~k-------~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-----nkgh~g  268 (334)
T KOG0278|consen  207 VKFWDAKSF------GLLKSYK-------MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-----NKGHFG  268 (334)
T ss_pred             eEEeccccc------cceeecc-------CccccccccccCCCceEEecCcceEEEEEeccCCceeeec-----ccCCCC
Confidence            999998742      3333332       223455667889889999999999999999 466655553     167888


Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      .+.++.|+|+|.+|++++.||+|++|..
T Consensus       269 pVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ceEEEEECCCCceeeccCCCceEEEEEe
Confidence            8999999999999999999999999984

>KOG0640|consensus

Probab=99.87  E-value=1.6e-20  Score=138.19  Aligned_cols=211  Identities=16%  Similarity=0.269  Sum_probs=159.4

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc------------cee------eE----EecCceeeEEcCCCcE
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT------------NCV------FL----AFTWPRGIAVGPDNSI  111 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~------------~~~------~~----~~~~~~~l~~~~~g~~  111 (319)
                      |.....+-+|++||.++++++.|..|++    ++.+.            ++.      +.    |...++.+.|+|...+
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKi----ldvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKI----LDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEE----eehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            4456678899999999999999999999    76641            000      11    3446789999999999


Q ss_pred             EEEcCCCCeEEEEcCCCcEEE-EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998        112 VVADSSNHRVQVFQSDGTFVG-KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS  190 (319)
Q Consensus       112 ~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  190 (319)
                      +++++.|++|++||......+ .+..    ......+.+|.|+|.|.+++.+.....+++||+++..      .   +..
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~----~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q------c---fvs  253 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKV----FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ------C---FVS  253 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHH----hhccceeeeEeecCCCceEEEecCCCceeEEecccee------E---eee
Confidence            999999999999994321111 1111    1223567899999999999999999999999998531      1   111


Q ss_pred             cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEE
Q psy13998        191 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI  269 (319)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i  269 (319)
                      .....++...++.+.+++.+++|++++.||.|++|| ..++.+.++...    -....+.+..|..+|+++++.+.|..+
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A----H~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA----HGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh----cCCceeeeEEEccCCeEEeecCCccee
Confidence            122245667788999999999999999999999999 677777766421    113457888999999999999999999


Q ss_pred             EEEc-CCCceEEeeccc
Q psy13998        270 QIFT-PDGQFLRAFGCW  285 (319)
Q Consensus       270 ~~~~-~~g~~~~~~~~~  285 (319)
                      ++|. ..|+.+..+...
T Consensus       330 kLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGA  346 (430)
T ss_pred             eeeeecCCceEEEEecC
Confidence            9999 578888777543

>KOG0973|consensus

Probab=99.86  E-value=8.8e-20  Score=154.53  Aligned_cols=271  Identities=11%  Similarity=0.079  Sum_probs=190.9

Q ss_pred             ccccccCCCccchhccccc--eeeeecccCCC--------------------CCcCCCCcceEEcCCCcEEEEeCCCCeE
Q psy13998         22 SGIGQVGTTPRSQYLQKRR--LQFKIGSRGSE--------------------PGCFTWPRGIAVGPDNSIVVADSSNHRV   79 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~--~~~~~~~~~~~--------------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v   79 (319)
                      ..|..+..+|++..++++.  .+....+|...                    ..|...+.++.|++||+++++++.|+.|
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v   93 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV   93 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence            4577888999999999887  43333333221                    2356889999999999999999999999


Q ss_pred             EEecccccccc------cee---------eE-------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecC
Q psy13998         80 QVCFPHFDLKT------NCV---------FL-------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGS  136 (319)
Q Consensus        80 ~~~~~~~~~~~------~~~---------~~-------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~  136 (319)
                      .+    |....      .+.         +.       |-..+.+++++|++.++++.+.|++|.+|+ .+.+.++.+  
T Consensus        94 ~i----W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl--  167 (942)
T KOG0973|consen   94 MI----WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL--  167 (942)
T ss_pred             EE----eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee--
Confidence            99    55541      000         00       234668899999999999999999999999 666777777  


Q ss_pred             CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998        137 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  216 (319)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  216 (319)
                          .+|...|-+++|+|-|+++++-+.|++|++|+....      .....+...-...........+.++|||.++++.
T Consensus       168 ----~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw------~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  168 ----RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW------GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             ----ecccccccceEECCccCeeeeecCCceEEEEEcccc------eeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence                788889999999999999999999999999996531      1222221110001112234558899999988775


Q ss_pred             CC----CCeEEEEeCCCCE-EEEeCCCCCCcccccCcceEEEcCC------C-------c----EEEEeCCCCEEEEEcC
Q psy13998        217 SN----NHRVQIFDVNGRV-ITSFGSEGSEEGQLKFPRGVAVDDQ------G-------Y----ISVGDSGNNRIQIFTP  274 (319)
Q Consensus       217 ~~----~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~------g-------~----~~v~~~~~~~i~~~~~  274 (319)
                      ..    ...+.+++.++-. -..+      .+|......++|+|.      .       +    +.++++.|+.|.+|..
T Consensus       238 nA~n~~~~~~~IieR~tWk~~~~L------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  238 NAVNGGKSTIAIIERGTWKVDKDL------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             hhccCCcceeEEEecCCceeeeee------ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence            42    3467777764422 2333      455555666777651      1       1    6778899999999995


Q ss_pred             -CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        275 -DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       275 -~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       .-+++..+.     .-....+.+|+|+|||..+++++.||.|.++
T Consensus       312 ~~~RPl~vi~-----~lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  312 ALPRPLFVIH-----NLFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             CCCCchhhhh-----hhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence             233333321     2234578999999999988889999998763

>KOG0299|consensus

Probab=99.86  E-value=1.2e-19  Score=140.13  Aligned_cols=239  Identities=15%  Similarity=0.158  Sum_probs=179.9

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----------------------EecCceeeEEcCCC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----------------------AFTWPRGIAVGPDN  109 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~~~~l~~~~~g  109 (319)
                      ..|.-.+.+|++++++++.++++.+++|..    |+..++....                      |.....++++++||
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~k----w~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILK----WDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceee----eehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            356678899999999999999999999999    7665544321                      22345789999999


Q ss_pred             cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeee
Q psy13998        110 SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF  188 (319)
Q Consensus       110 ~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  188 (319)
                      ++++++..+..|.+|+ .+.+.++.+      .+|...+.+++|-..-.-+++++.|..+.+|+++..      .++..+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~------s~vetl  282 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVF------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL------SYVETL  282 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcc------cccccceeeeeeecCccceeeeecCCceEEEehhHh------HHHHHH
Confidence            9999999999999999 566667666      677788999999876666677788999999998742      333333


Q ss_pred             cccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCE
Q psy13998        189 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNR  268 (319)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~  268 (319)
                            .+|...+.+|......+.+.++..|.++++|.........+      .++...+.++++-.+ .-|++++.+|.
T Consensus       283 ------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlif------rg~~~sidcv~~In~-~HfvsGSdnG~  349 (479)
T KOG0299|consen  283 ------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIF------RGGEGSIDCVAFIND-EHFVSGSDNGS  349 (479)
T ss_pred             ------hCCccceeeechhcccceEEeccccceeEEEeccccceeee------eCCCCCeeeEEEecc-cceeeccCCce
Confidence                  55666666776666778888888899999999643333333      344556788888644 67899999999


Q ss_pred             EEEEc-CCCceEEeecccCCC------CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        269 IQIFT-PDGQFLRAFGCWGSG------DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       269 i~~~~-~~g~~~~~~~~~~~~------~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |.+|+ ...+++.+.......      ..+..++++++.-|...++++++.+|.||+|
T Consensus       350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW  407 (479)
T ss_pred             EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence            99999 455555544322110      1122488999999998999999999999999

>KOG0294|consensus

Probab=99.86  E-value=3.4e-19  Score=131.40  Aligned_cols=231  Identities=12%  Similarity=0.149  Sum_probs=170.8

Q ss_pred             CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCc--EEEEcCCCCeEEE
Q psy13998         50 SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNS--IVVADSSNHRVQV  123 (319)
Q Consensus        50 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~--~~~~~~~~~~i~~  123 (319)
                      ....|...+.+++++  |.++++++.|.+|++    ||+.+.....    +...++++.|.+.-.  .+++++.||.|.+
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~I----YDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHI----YDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEE----EeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            345677888999985  899999999999999    8887654433    455778899988753  7899999999999


Q ss_pred             EcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        124 FQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      |+.. -..+..+      ..|...++.++++|.+++-++.+.|+.++.||+-..    .+.++..+         ...+.
T Consensus       112 w~~~~W~~~~sl------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G----r~a~v~~L---------~~~at  172 (362)
T KOG0294|consen  112 WRVGSWELLKSL------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG----RVAFVLNL---------KNKAT  172 (362)
T ss_pred             EEcCCeEEeeee------cccccccceeEecCCCceEEEEcCCceeeeehhhcC----ccceeecc---------CCcce
Confidence            9943 3555555      567778999999999999999999999999997421    11122211         12345


Q ss_pred             eEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEe
Q psy13998        203 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRA  281 (319)
Q Consensus       203 ~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~  281 (319)
                      .+.|+|.|..|+... .+.|-+|..+...+...      ......+.++.+.. +..++++..+..|.+||.+ +..+..
T Consensus       173 ~v~w~~~Gd~F~v~~-~~~i~i~q~d~A~v~~~------i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  173 LVSWSPQGDHFVVSG-RNKIDIYQLDNASVFRE------IENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTE  244 (362)
T ss_pred             eeEEcCCCCEEEEEe-ccEEEEEecccHhHhhh------hhccccceeeeecC-CceEEEecCCceEEEeccCCCcccee
Confidence            589999998666655 34788888654333222      11112345555553 4677788889999999965 667777


Q ss_pred             ecccCCCCCCCCCcceEEE--ccCCcEEEEeCCCCeEEeC
Q psy13998        282 FGCWGSGDGEFKGLEGVAV--MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~--~~~g~~~v~~~~~~~i~v~  319 (319)
                      +      .+|..++-++++  .|++.++++.+.||.|+||
T Consensus       245 ~------~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vW  278 (362)
T KOG0294|consen  245 F------LAHENRVKDIASYTNPEHEYLVTASSDGFIKVW  278 (362)
T ss_pred             e------ecchhheeeeEEEecCCceEEEEeccCceEEEE
Confidence            7      789999999984  4677899999999999999

>KOG0301|consensus

Probab=99.86  E-value=1.2e-19  Score=146.85  Aligned_cols=243  Identities=16%  Similarity=0.292  Sum_probs=182.6

Q ss_pred             hccccceeeeecccCCC----------CCcCCCCcc-eEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----Eec
Q psy13998         35 YLQKRRLQFKIGSRGSE----------PGCFTWPRG-IAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFT   98 (319)
Q Consensus        35 ~l~~~~~~~~~~~~~~~----------~~~~~~~~~-v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~   98 (319)
                      .+..++.+.+...|...          .++...+.. +++.+ ++-.++.++.|..+.+    |...+...+.    |-.
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v----~~~~~~~P~~~LkgH~s  102 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV----FKLSQAEPLYTLKGHKS  102 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE----EecCCCCchhhhhcccc
Confidence            34445555556555432          223333333 66654 4446788899999999    7776555444    445


Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      .+.++....++. +++++.|.++++|-.. +....+      .+|...+++++..|++ .|++++.|..|++|.-.    
T Consensus       103 nVC~ls~~~~~~-~iSgSWD~TakvW~~~-~l~~~l------~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----  169 (745)
T KOG0301|consen  103 NVCSLSIGEDGT-LISGSWDSTAKVWRIG-ELVYSL------QGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----  169 (745)
T ss_pred             ceeeeecCCcCc-eEecccccceEEecch-hhhccc------CCcchheeeeeecCCC-cEEeccCcceeeeccCC----
Confidence            667777766666 8999999999999743 222333      6788889999988877 89999999999999864    


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                          +.+..+      .+|...++++++-+++. |++++.||.|+.|+.+|..+.+.      .+|.+.+.++....++.
T Consensus       170 ----~~l~tf------~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~------~ghtn~vYsis~~~~~~  232 (745)
T KOG0301|consen  170 ----TLLKTF------SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEM------HGHTNFVYSISMALSDG  232 (745)
T ss_pred             ----chhhhh------ccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeee------eccceEEEEEEecCCCC
Confidence                555555      56778889999987654 67778899999999999999888      78888999999777788


Q ss_pred             EEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        259 ISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++++.|+++++|+.+ ...+.+      ......+|++.+-++|.++ +++.||.||||
T Consensus       233 ~Ivs~gEDrtlriW~~~-e~~q~I------~lPttsiWsa~~L~NgDIv-vg~SDG~VrVf  285 (745)
T KOG0301|consen  233 LIVSTGEDRTLRIWKKD-ECVQVI------TLPTTSIWSAKVLLNGDIV-VGGSDGRVRVF  285 (745)
T ss_pred             eEEEecCCceEEEeecC-ceEEEE------ecCccceEEEEEeeCCCEE-EeccCceEEEE
Confidence            99999999999999965 666666      2334478999988888854 56788999997

>KOG0289|consensus

Probab=99.86  E-value=4.7e-19  Score=135.96  Aligned_cols=270  Identities=13%  Similarity=0.120  Sum_probs=193.7

Q ss_pred             ccccccCCCccchhccccceeeeeccc--------CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         22 SGIGQVGTTPRSQYLQKRRLQFKIGSR--------GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      .++..+...|......++..+...-..        ...+||...+..+.++++....++++.|..|++    |.......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v----ws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRV----WSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEe----eccccccC
Confidence            445555544443444455444222111        224688889999999999999999999999999    76643332


Q ss_pred             eE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEE
Q psy13998         94 FL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV  168 (319)
Q Consensus        94 ~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i  168 (319)
                      ..    +-..+.++..+|.|.++++++.++.+...| .+|..+......    ...-..++.+|+|||.+|.++..|+.+
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----~s~v~~ts~~fHpDgLifgtgt~d~~v  371 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE----TSDVEYTSAAFHPDGLIFGTGTPDGVV  371 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec----cccceeEEeeEcCCceEEeccCCCceE
Confidence            22    334568899999999999999999988888 677776655321    112345889999999999999999999


Q ss_pred             EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccC
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKF  247 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~  247 (319)
                      ++||+..+      .-+..|      ++|...+..++|+.+|+++++++.++.|++||.. .+...++.     ......
T Consensus       372 kiwdlks~------~~~a~F------pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-----l~~~~~  434 (506)
T KOG0289|consen  372 KIWDLKSQ------TNVAKF------PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-----LDEKKE  434 (506)
T ss_pred             EEEEcCCc------cccccC------CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-----cccccc
Confidence            99999854      344444      5567778999999999999999999999999954 34344442     122335


Q ss_pred             cceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       248 ~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.++.||..|.+++.++.+=.|+.+....+.-..+...   ..+....+++.|..+.+++++++.|..++++
T Consensus       435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~---~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL---ADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh---hhcccccceeeecccceEEeeccchhheEEe
Confidence            78899999999999998777788887443332222111   3344567888898888899999999888775

>KOG0296|consensus

Probab=99.86  E-value=7.9e-19  Score=131.83  Aligned_cols=239  Identities=12%  Similarity=0.184  Sum_probs=177.1

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      ..|...+.+++.+|+.++.++++.|..-.+    |+..++....    |...+.++.|+.+|.+++++.-++.|.+|. .
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~Afl----W~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFL----WDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEE----EEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            467789999999999999999999999999    9888766444    456889999999999999999999999999 5


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      ++.....+.      .....+.-+.++|.+.++++++.|+.+.+|.+..+      .....+      .++....++=.+
T Consensus       137 tg~~~~~~~------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~------~~~kv~------~Gh~~~ct~G~f  198 (399)
T KOG0296|consen  137 TGGEQWKLD------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ------ALCKVM------SGHNSPCTCGEF  198 (399)
T ss_pred             cCceEEEee------cccCceEEEEecccccEEEeecCCCcEEEEECCCc------ceeeEe------cCCCCCcccccc
Confidence            566655552      23355677899999999999999999999998743      233333      344455566678


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC--------------------------------------C------
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS--------------------------------------E------  241 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~--------------------------------------~------  241 (319)
                      .|+|+.++++..++.|++|++ +++....+.....                                      .      
T Consensus       199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l  278 (399)
T KOG0296|consen  199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL  278 (399)
T ss_pred             cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence            899999999999999999996 6777666541100                                      0      


Q ss_pred             -cccccCcceE---EEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        242 -EGQLKFPRGV---AVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       242 -~~~~~~~~~i---~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                       ..+.....++   .++..=.+.++++.+++|.+||.....++..      -.|...+..+.|.+ ..+++++..+|.|+
T Consensus       279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~------c~he~~V~~l~w~~-t~~l~t~c~~g~v~  351 (399)
T KOG0296|consen  279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI------CEHEDGVTKLKWLN-TDYLLTACANGKVR  351 (399)
T ss_pred             cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee------ccCCCceEEEEEcC-cchheeeccCceEE
Confidence             0000001112   2222224667777889999999665555544      46777799999988 57888899999999


Q ss_pred             eC
Q psy13998        318 VF  319 (319)
Q Consensus       318 v~  319 (319)
                      .|
T Consensus       352 ~w  353 (399)
T KOG0296|consen  352 QW  353 (399)
T ss_pred             ee
Confidence            88

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=9.5e-18  Score=133.50  Aligned_cols=233  Identities=20%  Similarity=0.275  Sum_probs=156.8

Q ss_pred             CCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEEcC-CCc
Q psy13998         56 TWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVFQS-DGT  129 (319)
Q Consensus        56 ~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~~~  129 (319)
                      ..|.+++++|+|+. ++++..++.|++    |+..+......+   ..+..++++++++ +++++..++.+.+||. +++
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQV----IDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEE----EECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            34788999999985 577788899999    888765554433   2467788999987 5566667889999995 445


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC-EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      .+..+..       ...+.+++++|+|.++++...++ .+..|+..+.      +......       ....|..+++++
T Consensus       107 ~~~~~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~------~~~~~~~-------~~~~~~~~~~s~  166 (300)
T TIGR03866       107 VLAEIPV-------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY------EIVDNVL-------VDQRPRFAEFTA  166 (300)
T ss_pred             EEeEeeC-------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC------eEEEEEE-------cCCCccEEEECC
Confidence            5544421       13467899999998888776554 5667787642      2222111       112466789999


Q ss_pred             CCcEE-EEeCCCCeEEEEeCC-CCEEEEeCCCCC-CcccccCcceEEEcCCCcE-EEEeCCCCEEEEEcC-CCceEEeec
Q psy13998        209 TNRVI-VSDSNNHRVQIFDVN-GRVITSFGSEGS-EEGQLKFPRGVAVDDQGYI-SVGDSGNNRIQIFTP-DGQFLRAFG  283 (319)
Q Consensus       209 ~g~~~-v~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~~-~v~~~~~~~i~~~~~-~g~~~~~~~  283 (319)
                      +++.+ ++...++.|++||.. ++.+..+..... .......|.+++++|+|++ |++...+++|.+||. +++.+..+.
T Consensus       167 dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~  246 (300)
T TIGR03866       167 DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL  246 (300)
T ss_pred             CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            99765 455568899999964 444444321110 0111224678999999975 666667789999995 455554441


Q ss_pred             ccCCCCCCCCCcceEEEccCCcEEEE-eCCCCeEEeC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSNGNILVC-DRENHRIQVF  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~g~~~v~-~~~~~~i~v~  319 (319)
                             +...+.+++|+|+|+.+++ +..++.|++|
T Consensus       247 -------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       247 -------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             -------eCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence                   2236889999999986555 5678899987

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0641|consensus

Probab=99.85  E-value=7.2e-18  Score=119.06  Aligned_cols=244  Identities=14%  Similarity=0.222  Sum_probs=165.6

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEec-ccc-cccccee-------------eEEecCceeeEEcCCCcEEEEcCCCCe
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCF-PHF-DLKTNCV-------------FLAFTWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~-~~~-~~~~~~~-------------~~~~~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      ..+.+++|.|.|.+|+.++...+++++. |.. ++.....             ..+...+.+.+|+|+|.++++++.++.
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~  112 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT  112 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence            5678999999999999999999999842 211 1110000             003346789999999999999999999


Q ss_pred             EEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC----CCeEEEEeC-CCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        121 VQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN----TNRVIVSDS-NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      |++.-.+..........-....|...+..++|..    .+.++++++ .|..|++-|...      |+....+      .
T Consensus       113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~------g~~~~a~------s  180 (350)
T KOG0641|consen  113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR------GQGFHAL------S  180 (350)
T ss_pred             EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC------CCcceee------c
Confidence            8887533221111111111123456678888864    246666654 456676666542      2322222      2


Q ss_pred             CCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcc-cccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEG-QLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      ++..++..+ ++-+|-++++++.+..|+.||.. ...+..+...-...+ ....+..++++|.|++++++..|....+||
T Consensus       181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            333344332 23467899999999999999964 344444433322222 234578899999999999999999999999


Q ss_pred             -CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        274 -PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       274 -~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                       ..|+.++.+      ..|...+.++.|+|...++.+++.|..|++
T Consensus       260 irg~r~iq~f------~phsadir~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  260 IRGGRMIQRF------HPHSADIRCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             eeCCceeeee------CCCccceeEEEeCCCceEEEEecccceEEE
Confidence             567788888      678889999999999889999999999886

>KOG0316|consensus

Probab=99.85  E-value=3.4e-19  Score=126.31  Aligned_cols=251  Identities=14%  Similarity=0.169  Sum_probs=191.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.++-+.-++.|-.+...+.++..|....|        |-..+..++.+.|+..|+++++|..+.+    ||..+++
T Consensus        17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v----wDV~TGk   92 (307)
T KOG0316|consen   17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV----WDVNTGK   92 (307)
T ss_pred             ccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE----EEcccCe
Confidence            567888889999999999999999999987654        4467888899989999999999999999    9999988


Q ss_pred             eeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEc-C--CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         93 VFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-S--DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        93 ~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      ....    ...++.+.|+.+..++++++-|..++.|| .  .-++++.+.      .....+.++.+  .+..+++++.|
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild------ea~D~V~Si~v--~~heIvaGS~D  164 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD------EAKDGVSSIDV--AEHEIVAGSVD  164 (307)
T ss_pred             eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh------hhcCceeEEEe--cccEEEeeccC
Confidence            8774    45789999999889999999999999999 3  335555552      22344555554  46778999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQ  244 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~  244 (319)
                      |+++.||++.      |+....+        ....++++.++++++..++++.++.+++.|. +|+.+..+      .++
T Consensus       165 GtvRtydiR~------G~l~sDy--------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY------kGh  224 (307)
T KOG0316|consen  165 GTVRTYDIRK------GTLSSDY--------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY------KGH  224 (307)
T ss_pred             CcEEEEEeec------ceeehhh--------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh------ccc
Confidence            9999999873      2322211        1234688999999999999999999999995 67777666      444


Q ss_pred             ccCc--ceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCC-CcceEEEccCCcEEEE
Q psy13998        245 LKFP--RGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFK-GLEGVAVMSNGNILVC  309 (319)
Q Consensus       245 ~~~~--~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~-~~~~l~~~~~g~~~v~  309 (319)
                      .+.-  ...++.......++++.||.|++|| .++..+..+.      .+.. .+.++++.|.-.-+++
T Consensus       225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~------~~~~v~v~dl~~hp~~~~f~~  287 (307)
T KOG0316|consen  225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS------VVSTVIVTDLSCHPTMDDFIT  287 (307)
T ss_pred             ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec------cCCceeEEeeecccCccceeE
Confidence            3332  3455666668899999999999999 5666666662      2222 3678888887543333

>KOG0305|consensus

Probab=99.85  E-value=4.5e-19  Score=142.37  Aligned_cols=229  Identities=14%  Similarity=0.153  Sum_probs=177.7

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE-----ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCC
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDG  128 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~  128 (319)
                      -+.|.++.++++|.+++.+..+|.|.+    ||..+......     ...+.++++.  +.++.+++.++.|..+| ...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~i----wD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~  290 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQI----WDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS  290 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEE----EehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence            378999999999999999999999999    88765554442     3345667775  67899999999999999 333


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      +.....     ..+|...++++.++++++.+++++.|+.+.+||....      ..+..+      ..|...+..++|+|
T Consensus       291 ~~~~~~-----~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~------~p~~~~------~~H~aAVKA~awcP  353 (484)
T KOG0305|consen  291 QHVVST-----LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP------EPKFTF------TEHTAAVKALAWCP  353 (484)
T ss_pred             hhhhhh-----hhcccceeeeeEECCCCCeeccCCCccceEeccCCCc------cccEEE------eccceeeeEeeeCC
Confidence            322221     1567788999999999999999999999999998532      333333      45667788899998


Q ss_pred             C-CcEEEEeC--CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC--CCCEEEEEc-CCCceEEe
Q psy13998        209 T-NRVIVSDS--NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS--GNNRIQIFT-PDGQFLRA  281 (319)
Q Consensus       209 ~-g~~~v~~~--~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~--~~~~i~~~~-~~g~~~~~  281 (319)
                      - ..+++++.  .|+.|+.||. .|..+..+       .....+..|.|++..+-++++.  .++.|.+|+ +.-+.+..
T Consensus       354 ~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  354 WQSGLLATGGGSADRCIKFWNTNTGARIDSV-------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             CccCceEEcCCCcccEEEEEEcCCCcEeccc-------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence            4 46777765  4889999996 56665554       2345789999999875455443  567899999 55566666


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +      .+|...+..++++|||..+++++.|.++++|
T Consensus       427 l------~gH~~RVl~la~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  427 L------LGHTSRVLYLALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             e------cCCcceeEEEEECCCCCEEEEecccCcEEec
Confidence            6      6899999999999999999999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=4e-18  Score=135.62  Aligned_cols=265  Identities=17%  Similarity=0.163  Sum_probs=171.0

Q ss_pred             hccchhhhhhhhhh-cccccccCCCccchhc-cccceeeeecccCCCCCc-------CCCCcceEEcCCCcE-EEEeCCC
Q psy13998          7 AKNINSCFLLQTLL-VSGIGQVGTTPRSQYL-QKRRLQFKIGSRGSEPGC-------FTWPRGIAVGPDNSI-VVADSSN   76 (319)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~g~~-~~~~~~~   76 (319)
                      .++..++.++..+. ...+..+.++|++..+ .....+..+..|+...+.       ...+..++++|+|+. ++++..+
T Consensus        15 ~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~   94 (300)
T TIGR03866        15 VIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDD   94 (300)
T ss_pred             EEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCC
Confidence            44555666555554 3446778899998865 444444444444433221       134678899999884 5566678


Q ss_pred             CeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCC-eEEEEcC-CCcEEEEecCCCccCCCCCCceeEE
Q psy13998         77 HRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNH-RVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                      +.+++    |++.+...+..+.   .+.+++++|+|++++++..++ .+..|+. +++.......       ...+..++
T Consensus        95 ~~l~~----~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~  163 (300)
T TIGR03866        95 NLVTV----IDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-------DQRPRFAE  163 (300)
T ss_pred             CeEEE----EECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-------CCCccEEE
Confidence            99999    8887665555443   478899999998877766553 5667784 4444433311       13467899


Q ss_pred             EeCCCeEE-EEeCCCCEEEEEecCCceeeecCceeeeecccC-CcCCCCCCceeEEEcCCCcE-EEEeCCCCeEEEEeCC
Q psy13998        152 VSNTNRVI-VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-NKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVN  228 (319)
Q Consensus       152 ~~~~g~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~i~~~~~~  228 (319)
                      ++++++.+ ++...++.+.+||+.+.      +.+..+.... ........|.+++++++++. |++...++.+.+||..
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcc------eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            99998765 45556899999999753      2222221110 00111234667899999875 5555667789999964


Q ss_pred             -CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEE-eCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        229 -GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVG-DSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       229 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~-~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                       ++....+.       ....+.+++++|+|..+++ +..++.|.+||. +++.+..+.       ....|++++++|
T Consensus       238 ~~~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~~~  300 (300)
T TIGR03866       238 TYEVLDYLL-------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK-------VGRLPWGVVVRP  300 (300)
T ss_pred             CCcEEEEEE-------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-------cccccceeEeCC
Confidence             44443331       1235789999999986655 456899999995 566677772       235789998865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0283|consensus

Probab=99.85  E-value=1.3e-19  Score=149.72  Aligned_cols=237  Identities=13%  Similarity=0.117  Sum_probs=172.0

Q ss_pred             hhcccccccCCCccchhccccceeeeecccCCC-----------------------------------------------
Q psy13998         19 LLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----------------------------------------------   51 (319)
Q Consensus        19 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------------------------------------   51 (319)
                      .....|.++-||++|.||+++..+..+.+|...                                               
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            346789999999999999999888776666211                                               


Q ss_pred             ---------------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcC
Q psy13998         52 ---------------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGP  107 (319)
Q Consensus        52 ---------------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~  107 (319)
                                           .||...+..|.|+.+ .++++++-|.+|++    |.+.....+.   |...+++++|+|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRL----Wh~~~~~CL~~F~HndfVTcVaFnP  419 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRL----WHPGRKECLKVFSHNDFVTCVAFNP  419 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEe----ecCCCcceeeEEecCCeeEEEEecc
Confidence                                 244566778899865 57888899999999    8887666665   556789999999


Q ss_pred             C-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceee
Q psy13998        108 D-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       108 ~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                      . .++|++++-|+++++|+...+.+..+.      .-...++++++.|+|+..+.++.+|.+++|+..+..+..+..+..
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWN------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeeh------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            5 579999999999999995555444442      222678999999999999999999999999998765443322221


Q ss_pred             eecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998        187 KFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~  264 (319)
                      +-    ........++|+.+.|.. .-+++.+.|.+|++||. +-.++..+....    .........|+.||+++|+++
T Consensus       494 ~~----~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~----n~~SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  494 HN----KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR----NTSSQISASFSSDGKHIVSAS  565 (712)
T ss_pred             cc----CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc----cCCcceeeeEccCCCEEEEee
Confidence            11    111122268899888643 33444466889999996 444555552111    122345567888999999999


Q ss_pred             CCCEEEEEcC
Q psy13998        265 GNNRIQIFTP  274 (319)
Q Consensus       265 ~~~~i~~~~~  274 (319)
                      .|..|++|+.
T Consensus       566 eDs~VYiW~~  575 (712)
T KOG0283|consen  566 EDSWVYIWKN  575 (712)
T ss_pred             cCceEEEEeC
Confidence            9999999995

>KOG2106|consensus

Probab=99.85  E-value=1.4e-18  Score=135.93  Aligned_cols=278  Identities=10%  Similarity=0.064  Sum_probs=192.6

Q ss_pred             hccchhhhhhhhhh--cccccccCCCccchhccc-c-------------ceeeeecccCCCCCcCCCCcceEEcCCCcEE
Q psy13998          7 AKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQK-R-------------RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIV   70 (319)
Q Consensus         7 ~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~-~-------------~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~   70 (319)
                      .++.+.+..+...+  +..+..+.|+|...-+.. .             +...+-++... .. ...|.+|+|.++|.. 
T Consensus       184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-~e-kk~Vl~v~F~engdv-  260 (626)
T KOG2106|consen  184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-RE-KKFVLCVTFLENGDV-  260 (626)
T ss_pred             hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc-cc-ceEEEEEEEcCCCCE-
Confidence            45566665555555  456677778887664432 1             11112121111 11 277899999999985 


Q ss_pred             EEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCC--------
Q psy13998         71 VADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMG--------  138 (319)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------  138 (319)
                      +++.++|.|.+    |+..+.....    |-..+.++++..+|.++- ++.|.+|..||.+-+.++....+.        
T Consensus       261 iTgDS~G~i~I----w~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv  335 (626)
T KOG2106|consen  261 ITGDSGGNILI----WSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTV  335 (626)
T ss_pred             EeecCCceEEE----EeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEE
Confidence            56677899999    7765443332    445678889988887766 889999999984432222221110        


Q ss_pred             ---------------------------ccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998        139 ---------------------------NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       139 ---------------------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                                                 ...+|.....+++.+|+.+.|++++.++.+.+|+-.        ++.....  
T Consensus       336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--------k~~wt~~--  405 (626)
T KOG2106|consen  336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--------KLEWTKI--  405 (626)
T ss_pred             ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC--------ceeEEEE--
Confidence                                       012344566889999999999999999999999932        2222111  


Q ss_pred             CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE
Q psy13998        192 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI  271 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~  271 (319)
                           -.....++.|+|.| .++.+...|+..++|.+.+...++.      ........++++|+|.+++.++.|+.|++
T Consensus       406 -----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~------~d~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  406 -----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH------TDNEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             -----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE------ecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence                 01234678999999 8888888999999997666555552      22345678999999999999999999999


Q ss_pred             Ec--CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        272 FT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       272 ~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |.  .+|..+...+.     -+...+..+.|++|++++++.+.|-.|..|
T Consensus       474 y~Vs~~g~~y~r~~k-----~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  474 YRVSANGRKYSRVGK-----CSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             EEECCCCcEEEEeee-----ecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            87  56777666643     223678999999999999999999888776

>KOG0289|consensus

Probab=99.85  E-value=1.2e-18  Score=133.71  Aligned_cols=232  Identities=12%  Similarity=0.184  Sum_probs=174.6

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTF  130 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~  130 (319)
                      ..+.++.+.+.....++++.|..+.+    +|..+++.+..+.    .+..+.++++....++++.+..|++|. .....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~----~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVL----FDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEE----EecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            44556666665567889999989989    8887776665433    567889999988899999999999999 33332


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      ....      ..|...++.+..+|+|.++++++.++.....|.+.      |..+.....    .......++.+|+|||
T Consensus       296 ~~~~------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~------g~~lt~vs~----~~s~v~~ts~~fHpDg  359 (506)
T KOG0289|consen  296 PTSS------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS------GSQLTVVSD----ETSDVEYTSAAFHPDG  359 (506)
T ss_pred             cccc------ccccccceeeeeccCCcEEEEecCCceEEEEEccC------CcEEEEEee----ccccceeEEeeEcCCc
Confidence            2222      34667889999999999999999999998888763      233322211    1112345789999999


Q ss_pred             cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCC
Q psy13998        211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSG  288 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  288 (319)
                      .+|.++..++.+++||. ++..+..|      ++|...+..|+|+.+|++++++..|+.|.+||. .-+.++++..    
T Consensus       360 Lifgtgt~d~~vkiwdlks~~~~a~F------pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l----  429 (506)
T KOG0289|consen  360 LIFGTGTPDGVVKIWDLKSQTNVAKF------PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL----  429 (506)
T ss_pred             eEEeccCCCceEEEEEcCCccccccC------CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec----
Confidence            99999999999999996 45566667      678888999999999999999999999999994 4455555532    


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                       .....+.++.|+..|.+++.++.+=.|++
T Consensus       430 -~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~  458 (506)
T KOG0289|consen  430 -DEKKEVNSLSFDQSGTYLGIAGSDLQVYI  458 (506)
T ss_pred             -cccccceeEEEcCCCCeEEeecceeEEEE
Confidence             22336899999999998888876655543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.85  E-value=3.4e-18  Score=153.79  Aligned_cols=220  Identities=22%  Similarity=0.407  Sum_probs=157.2

Q ss_pred             CcCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE--------------------EecCceeeEEcC-CCc
Q psy13998         53 GCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--------------------AFTWPRGIAVGP-DNS  110 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~~-~g~  110 (319)
                      +.+..|.+|+++++++ +|+++..++.|++    ++..++....                    .+..|.++++++ ++.
T Consensus       621 a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~----id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~  696 (1057)
T PLN02919        621 ATFNRPQGLAYNAKKNLLYVADTENHALRE----IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK  696 (1057)
T ss_pred             cccCCCcEEEEeCCCCEEEEEeCCCceEEE----EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe
Confidence            3578899999999766 7899998999999    6664332211                    145789999999 678


Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEecCCCc---------cCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceee-
Q psy13998        111 IVVADSSNHRVQVFQSDGTFVGKFGSMGN---------KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQ-  179 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~-  179 (319)
                      +|+++..+++|++|+..+..+..+...+.         .......|.+++++++++ +|+++..+++|++||+++.... 
T Consensus       697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~  776 (1057)
T PLN02919        697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL  776 (1057)
T ss_pred             EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            99999999999999965444443322110         012346789999999875 9999999999999998743211 


Q ss_pred             ec-Cc-----eeeeeccc-C-CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC--------Ccc
Q psy13998        180 SD-GT-----FVGKFGSM-G-NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS--------EEG  243 (319)
Q Consensus       180 ~~-~~-----~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~  243 (319)
                      .. +.     ....++.. + .....+..|.+++++++|++|+++..+++|++||.++..+..+...+.        ..+
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a  856 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA  856 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence            00 00     00111100 0 012245679999999999999999999999999987665554432211        134


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      .+..|.+|+++++|++||++..+++|++|+.+.
T Consensus       857 ~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        857 QLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             ccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            567899999999999999999999999999643

>KOG0281|consensus

Probab=99.84  E-value=2.8e-20  Score=139.05  Aligned_cols=253  Identities=14%  Similarity=0.201  Sum_probs=182.3

Q ss_pred             ccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----Eec
Q psy13998         31 PRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFT   98 (319)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~   98 (319)
                      .+...+.++..+.++++|+..        .||...+.++.++  .+++++++.|.+|++    ||.++++.+.    |..
T Consensus       205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrv----WDv~tge~l~tlihHce  278 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRV----WDVNTGEPLNTLIHHCE  278 (499)
T ss_pred             ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEE----EeccCCchhhHHhhhcc
Confidence            345678888899999999765        5777888888775  569999999999999    9998877665    455


Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      .+..+.|+  +.+.++.+.|..+.+|+.....-  +.......+|...++.+.|+  .++++++++|.+|++|+..+.  
T Consensus       279 aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~--it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~--  350 (499)
T KOG0281|consen  279 AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC--  350 (499)
T ss_pred             eeEEEEEe--CCEEEEecCCceeEEEeccCchH--HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce--
Confidence            77788885  45889999999999999543210  00000014566666766654  579999999999999999853  


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g  257 (319)
                          .+++.+      .+|...+.++.  -.|+++++++.+++|++||. .|..++.+      .+|..-+.++.|+.  
T Consensus       351 ----efvRtl------~gHkRGIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvL------eGHEeLvRciRFd~--  410 (499)
T KOG0281|consen  351 ----EFVRTL------NGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVL------EGHEELVRCIRFDN--  410 (499)
T ss_pred             ----eeehhh------hcccccceehh--ccCeEEEecCCCceEEEEeccccHHHHHH------hchHHhhhheeecC--
Confidence                555554      34444443333  36899999999999999996 57777777      77888889999964  


Q ss_pred             cEEEEeCCCCEEEEEcCCCceEE-eec---ccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        258 YISVGDSGNNRIQIFTPDGQFLR-AFG---CWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~~~g~~~~-~~~---~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +-+|++..||+|++||.....-. ...   ..-....|...+..+.|+  ...+++.+.|..|.||
T Consensus       411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiW  474 (499)
T KOG0281|consen  411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIW  474 (499)
T ss_pred             ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEE
Confidence            56799999999999995321111 000   000112355678888885  3568888889999888

>KOG2096|consensus

Probab=99.84  E-value=1.5e-18  Score=128.30  Aligned_cols=246  Identities=15%  Similarity=0.208  Sum_probs=163.3

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee--------EEecCceeeEEcCCCc-EEEEcCCCCeEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF--------LAFTWPRGIAVGPDNS-IVVADSSNHRVQ  122 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~g~-~~~~~~~~~~i~  122 (319)
                      .||-..+.+|+|+.||+.+++.+.|+.|++    |+.......        .++..|+.++|.||-+ ++++.....+++
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~----w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDRSIRL----WDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCceEEE----EecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            577789999999999999999999999999    776432211        1456899999999864 555655667888


Q ss_pred             EEcC----CCcEEEEecCCC---ccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        123 VFQS----DGTFVGKFGSMG---NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       123 ~~~~----~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      +|..    +|.....+....   ....|...+..+-+..+++++++++.+..|.+|++.|+.+       ..+..     
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L-------~~idt-----  226 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLL-------QSIDT-----  226 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCcee-------eeecc-----
Confidence            8862    333222111111   0112223334455556778999999999999999988543       33321     


Q ss_pred             CCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC----CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE
Q psy13998        196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV----NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI  271 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~  271 (319)
                       ....-+..+++|+|+++++....-.|.+|.+    +|... .....-...+|...+..++|+++.+..++.+.||++++
T Consensus       227 -nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fq-ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  227 -NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQ-EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             -ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchh-hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence             1122345789999999998888888999984    44221 00001111678888999999999999999999999999


Q ss_pred             EcCCC--------ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        272 FTPDG--------QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       272 ~~~~g--------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ||.+=        +.++....+  .......|-.++++|+|..++..... .|++
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~p--l~aag~~p~RL~lsP~g~~lA~s~gs-~l~~  356 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAP--LHAAGSEPVRLELSPSGDSLAVSFGS-DLKV  356 (420)
T ss_pred             eeccceEecCCCchHhhcCCcc--hhhcCCCceEEEeCCCCcEEEeecCC-ceEE
Confidence            99542        222222110  01122456689999999977766543 3444

>PTZ00421 coronin; Provisional

Probab=99.84  E-value=7.9e-18  Score=139.55  Aligned_cols=220  Identities=11%  Similarity=0.154  Sum_probs=149.1

Q ss_pred             CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccccee-------eE----EecCceeeEEcCCC-cEEEEcCCC
Q psy13998         52 PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCV-------FL----AFTWPRGIAVGPDN-SIVVADSSN  118 (319)
Q Consensus        52 ~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~----~~~~~~~l~~~~~g-~~~~~~~~~  118 (319)
                      .||...+.+++|+| +++++++++.|++|++    |++.+.+.       +.    +-..+.+++|+|++ +++++++.|
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI----Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMG----WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE----EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            46778899999999 8889999999999999    87754321       12    23357889999985 689999999


Q ss_pred             CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +.|++|| ..++....+      ..|...+.+++|+++|.++++++.|+.|++||++..      +.+..+.      .+
T Consensus       148 gtVrIWDl~tg~~~~~l------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg------~~v~tl~------~H  209 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVI------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG------TIVSSVE------AH  209 (493)
T ss_pred             CEEEEEECCCCeEEEEE------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC------cEEEEEe------cC
Confidence            9999999 556666655      455667899999999999999999999999998742      3333331      11


Q ss_pred             CC-CceeEEEcCCCcEEEEeC----CCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-CCCEE
Q psy13998        198 LE-HPHYIAVSNTNRVIVSDS----NNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-GNNRI  269 (319)
Q Consensus       198 ~~-~~~~~~~~~~g~~~v~~~----~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-~~~~i  269 (319)
                      .. ....+.+.+++..+++.+    .++.|.+||...  .......     ...........++++++++++++ .++.|
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-----~d~~~~~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-----LDQSSALFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----cCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence            11 123456667665555432    468999999642  2222221     01112233456889988766655 69999


Q ss_pred             EEEcC-CCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        270 QIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       270 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      ++|+. +++.+.....     .......++++.|.
T Consensus       285 riwdl~~~~~~~~~~~-----~s~~~~~g~~~~pk  314 (493)
T PTZ00421        285 RCFELMNERLTFCSSY-----SSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEEeeCCceEEEeec-----cCCCCCcceEeccc
Confidence            99994 5665544321     12223456666663

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=1.4e-17  Score=133.97  Aligned_cols=246  Identities=16%  Similarity=0.258  Sum_probs=153.3

Q ss_pred             CCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCCc-EEEEcCCCCeEEEEcC-
Q psy13998         56 TWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDNS-IVVADSSNHRVQVFQS-  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-  126 (319)
                      ..|..++++|++++ |+++..++.|..    |+....+.+.      ....|..++++|+++ +|++...++.|.+|+. 
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~----~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~  110 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLS----YRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD  110 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEE----EEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence            56889999999985 555667888988    7664322221      123678999999997 5556666889999984 


Q ss_pred             -CCcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        127 -DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       127 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                       ++........    ......|+.++++|++++ |+++..++.|.+|+++..     +.+......... ......|..+
T Consensus       111 ~~g~~~~~~~~----~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-----g~l~~~~~~~~~-~~~g~~p~~~  180 (330)
T PRK11028        111 KDGIPVAPIQI----IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD-----GHLVAQEPAEVT-TVEGAGPRHM  180 (330)
T ss_pred             CCCCCCCceee----ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC-----CcccccCCCcee-cCCCCCCceE
Confidence             3322211111    112245788999998854 567778899999998641     111100000000 0112457889


Q ss_pred             EEcCCCcE-EEEeCCCCeEEEEeCC---CCE--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC--C
Q psy13998        205 AVSNTNRV-IVSDSNNHRVQIFDVN---GRV--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP--D  275 (319)
Q Consensus       205 ~~~~~g~~-~v~~~~~~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~--~  275 (319)
                      +++|+|++ |++...++.|.+|+.+   +..  +..+............+..+.++|+|+ +|+++..++.|.+|+.  +
T Consensus       181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            99999865 5666668999999964   322  222221111011123455799999987 5666567899999984  4


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +..+......   . ....|++++++|||+ +|+++..++.|.+|
T Consensus       261 ~~~~~~~~~~---~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        261 GSVLSFEGHQ---P-TETQPRGFNIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             CCeEEEeEEE---e-ccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence            4333322211   1 124688999999998 66677678888886

>KOG0310|consensus

Probab=99.84  E-value=3.8e-19  Score=138.24  Aligned_cols=228  Identities=17%  Similarity=0.286  Sum_probs=172.7

Q ss_pred             cCCCCcceEEcCCCc--EEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         54 CFTWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      +.+.+.+++|+|...  +.+++  .-++.+    |+..+......+    ..+.++.|-.||++++++...|.|.+||.+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~--S~rvql----y~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS--SVRVQL----YSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec--ccEEEE----EecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence            357789999999654  34443  367888    877665554432    256889999999999999999999999954


Q ss_pred             Cc-EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        128 GT-FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       128 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      .+ .+..+      ..|...++...|+| ++.++++++.++.++.||+.+..      ....+      .+|...+.+.+
T Consensus        99 ~r~iLR~~------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------v~~~l------~~htDYVR~g~  160 (487)
T KOG0310|consen   99 SRVILRQL------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------VQAEL------SGHTDYVRCGD  160 (487)
T ss_pred             cHHHHHHH------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE------EEEEe------cCCcceeEeec
Confidence            42 33334      45666778888888 55788889999999999998642      11122      56777889999


Q ss_pred             EcCC-CcEEEEeCCCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--CceEE
Q psy13998        206 VSNT-NRVIVSDSNNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQFLR  280 (319)
Q Consensus       206 ~~~~-g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~~~  280 (319)
                      ++|. +.++++++.||.|++||...  ..+..+       .+...+..+.+-|.|.+++++++ +.|++||..  |+.+.
T Consensus       161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-------nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-------NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             cccCCCeEEEecCCCceEEEEEeccCCceeEEe-------cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence            9875 47999999999999999643  445554       34556788899999988888765 689999943  45555


Q ss_pred             eecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+      ..|...++++++..++..+++++-|+.+++|
T Consensus       233 ~~------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVf  265 (487)
T KOG0310|consen  233 SM------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVF  265 (487)
T ss_pred             hh------hcccceEEEEEeecCCceEeecccccceEEE
Confidence            55      3488899999999999999999999999987

>KOG0268|consensus

Probab=99.84  E-value=5.3e-20  Score=138.02  Aligned_cols=231  Identities=14%  Similarity=0.208  Sum_probs=173.6

Q ss_pred             CCCCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         49 GSEPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      +...||.+.+.+++=.|+. ..+++++.||.|++    ||+.+..+...+    ..+.+|+++.  .-+++.+.|++|+.
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~Vki----WnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKI----WNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEE----EehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            5567999999999999976 57899999999999    998765555533    3678899876  45666778999999


Q ss_pred             EcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        124 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      |..++.....+..       .....++..+..+..|++++.  .|.+||..-.      .++..+      ......+.+
T Consensus       134 wk~~~~p~~tilg-------~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~------~Pv~sm------swG~Dti~s  192 (433)
T KOG0268|consen  134 WKIDGPPLHTILG-------KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD------NPVSSM------SWGADSISS  192 (433)
T ss_pred             eeccCCcceeeec-------cccccccccccccccccccCc--eeeecccccC------Ccccee------ecCCCceeE
Confidence            9988876666632       134456666666777887764  5889997632      233322      223345677


Q ss_pred             EEEcCCC-cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--CceE
Q psy13998        204 IAVSNTN-RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQFL  279 (319)
Q Consensus       204 ~~~~~~g-~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~~  279 (319)
                      +.++|.. .++.++..++.|.+||. .+.+++.+.       ....++.|+|+|++..|+++..|..++.||..  ...+
T Consensus       193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             EecCCCcchheeeeccCCceEEEecccCCccceee-------eeccccceecCccccceeeccccccceehhhhhhcccc
Confidence            8888865 67777778999999995 555555541       22357889999988899999999999999942  2344


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...      .+|...+.++.|+|.|+-+|+++.|.+||||
T Consensus       266 ~v~------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf  299 (433)
T KOG0268|consen  266 NVH------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF  299 (433)
T ss_pred             hhh------cccceeEEEeccCCCcchhccccccceEEEe
Confidence            444      5788889999999999999999999999997

>KOG0643|consensus

Probab=99.84  E-value=1.3e-17  Score=120.50  Aligned_cols=232  Identities=9%  Similarity=0.087  Sum_probs=175.1

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .||-..+..|.++.+|.++++++.|....+    |-...++.+.    |-..+.++.++.+.+.+++++.|.++++|| +
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~v----w~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTV----WYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceE----EEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            467778899999999999999999999999    6554454444    344778899998889999999999999999 8


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----CCCEEEEEecCCceeeecC-ceeeeecccCCcCCCCCC
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----NNHRVQIFDVNGRVFQSDG-TFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  200 (319)
                      +|+++..+...       ..+..+.|+.+|++++...     ..+.|.+++++....+... .+...+      +.....
T Consensus        83 tGk~la~~k~~-------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI------~t~~sk  149 (327)
T KOG0643|consen   83 TGKQLATWKTN-------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI------PTPDSK  149 (327)
T ss_pred             CCcEEEEeecC-------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe------cCCccc
Confidence            99999888543       4567889999998777654     3467888887632211111 222222      223356


Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCce
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQF  278 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~  278 (319)
                      ++.+-++|-+..++++..+|.|.+||. +|.....-.     ..|...++.|.++++..+|++++.|.+-.+|| .+-+.
T Consensus       150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~-----~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD-----EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             eeeeeecccCCEEEEecCCCcEEEEEcccCceeeech-----hhhccccccccccCCcceEEecccCccceeeeccceee
Confidence            777889999999999999999999995 554443321     44566899999999999999999999999999 45667


Q ss_pred             EEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        279 LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      ++++       ....++++.+++|-...++.++.
T Consensus       225 ~Kty-------~te~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  225 LKTY-------TTERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             EEEe-------eecccccceecccccceEEecCC
Confidence            7777       33457888999997665555543

>KOG1539|consensus

Probab=99.83  E-value=8.5e-19  Score=144.77  Aligned_cols=190  Identities=16%  Similarity=0.253  Sum_probs=150.6

Q ss_pred             eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee
Q psy13998        101 RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      .++++++.|+..+.++..|.|-+|+ ..|-....+...   ..|...+.+++++.-++++++++.+|-+..|+...+.  
T Consensus       452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~---~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--  526 (910)
T KOG1539|consen  452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS---PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--  526 (910)
T ss_pred             EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC---ccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--
Confidence            5677888888888888889999999 566555555322   4667788999999999999999999999999998653  


Q ss_pred             ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                          ++....       ....+.++..+....+++....+-.|.++|. ..+.++.+      .+|.+.+++++|+|||+
T Consensus       527 ----l~~~l~-------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f------~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  527 ----LKKSLR-------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF------WGHGNRITDMTFSPDGR  589 (910)
T ss_pred             ----eeeeec-------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh------hccccceeeeEeCCCCc
Confidence                222221       1234556777766778888888899999996 45666777      77888999999999999


Q ss_pred             EEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC-CeEEeC
Q psy13998        259 ISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN-HRIQVF  319 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~-~~i~v~  319 (319)
                      ++++.+.|++|++|| +.|..+-.+       .....+..+.++|+|.++++...| .-|.+|
T Consensus       590 WlisasmD~tIr~wDlpt~~lID~~-------~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTGTLIDGL-------LVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             EEEEeecCCcEEEEeccCcceeeeE-------ecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            999999999999999 788887766       234568899999999999999887 567777

>KOG0277|consensus

Probab=99.83  E-value=8.8e-19  Score=125.51  Aligned_cols=230  Identities=14%  Similarity=0.171  Sum_probs=174.2

Q ss_pred             CCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccce-eeE----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCC-
Q psy13998         56 TWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNC-VFL----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSD-  127 (319)
Q Consensus        56 ~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~-  127 (319)
                      +...+|+++++. +.++++++||++++    |+..... .+.    |...+.++.+++. ++.+++.+.|++|++|+++ 
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl----~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRL----FDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEE----eccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            567789999854 48889999999999    8864322 222    4446788888765 4678888999999999954 


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .+.+.++      .+|...+...+++| ..+++.+.+.|+.+++||++.     .|+.+. +      +.|...+.++.+
T Consensus       137 ~~Sv~Tf------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~-----~gk~~~-i------~ah~~Eil~cdw  198 (311)
T KOG0277|consen  137 PNSVQTF------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS-----PGKFMS-I------EAHNSEILCCDW  198 (311)
T ss_pred             CcceEee------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC-----CCceeE-E------EeccceeEeecc
Confidence            4556666      56778889999999 679999999999999999763     344443 3      334445566777


Q ss_pred             cC-CCcEEEEeCCCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCC--CceEE
Q psy13998        207 SN-TNRVIVSDSNNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPD--GQFLR  280 (319)
Q Consensus       207 ~~-~g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~--g~~~~  280 (319)
                      +. +.++++++..|+.|+.||...  ..+..+      .+|...++.++++|.. .++++++.|-++++|++.  ...+.
T Consensus       199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e  272 (311)
T KOG0277|consen  199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE  272 (311)
T ss_pred             cccCCcEEEecCCCceEEEEehhhccccceee------cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence            75 558899999999999999653  334444      5666778999999985 689999999999999954  23334


Q ss_pred             eecccCCCCCCCCCcceEEEccC-CcEEEEeCCCCeEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSN-GNILVCDRENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~-g~~~v~~~~~~~i~v~  319 (319)
                      +.      +.|...+.++.+++- ...+++.+.|..+.||
T Consensus       273 ~~------~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw  306 (311)
T KOG0277|consen  273 TV------DHHTEFVCGLDWSLFDPGQVASTGWDELLYVW  306 (311)
T ss_pred             hh------hccceEEeccccccccCceeeecccccceeee
Confidence            44      567778888988864 4589999999999998

>KOG0301|consensus

Probab=99.83  E-value=8.5e-19  Score=141.96  Aligned_cols=230  Identities=18%  Similarity=0.322  Sum_probs=181.2

Q ss_pred             CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE--EecCcee-----eEEcC-CCcEEEEcCCCCe
Q psy13998         49 GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRG-----IAVGP-DNSIVVADSSNHR  120 (319)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~-----l~~~~-~g~~~~~~~~~~~  120 (319)
                      ....||-..+..+++.+. ..+++++.|+++++    |+...++...  .+..|.+     +++.+ ++..++.++.|..
T Consensus         8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~v----w~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKV----WAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             EEeccCccchheeEecCC-eEEeecCCCCceee----eeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            344677778888887644 46778888999999    8775444433  1222322     44443 4445777888999


Q ss_pred             EEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        121 VQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       121 i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      |.+|.. ...++..+      .+|...+++++...++. +++++.|.++++|...        ++....      .+|..
T Consensus        83 i~v~~~~~~~P~~~L------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--------~l~~~l------~gH~a  141 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTL------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--------ELVYSL------QGHTA  141 (745)
T ss_pred             EEEEecCCCCchhhh------hccccceeeeecCCcCc-eEecccccceEEecch--------hhhccc------CCcch
Confidence            999994 44566666      68888999999888887 8999999999999765        333222      56677


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceE
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL  279 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~  279 (319)
                      .+..++.-|++ .|++++.|..|++|.- ++.++++      .+|...++++++-+++. |++++.|+.|+.|+.+|..+
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~tf------~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l  212 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLKTF------SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVL  212 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccC-Cchhhhh------ccchhheeeeEEecCCC-eEeecCCceEEEEeccCcee
Confidence            77888887877 8999999999999986 6777788      78999999999988754 57888999999999999999


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+      .+|...+.++....++.++++.+.|+++++|
T Consensus       213 ~~~------~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW  246 (745)
T KOG0301|consen  213 LEM------HGHTNFVYSISMALSDGLIVSTGEDRTLRIW  246 (745)
T ss_pred             eee------eccceEEEEEEecCCCCeEEEecCCceEEEe
Confidence            998      7899999999988888999999999999999

>KOG0639|consensus

Probab=99.83  E-value=3.3e-19  Score=139.47  Aligned_cols=228  Identities=13%  Similarity=0.203  Sum_probs=183.1

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE--Eec----CceeeEEcCCCcEEEEcCCCCeEEEEcC-CC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFT----WPRGIAVGPDNSIVVADSSNHRVQVFQS-DG  128 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~  128 (319)
                      +++..+.+.+||+-+++++.-.++.+    ||+.......  ++.    ...+++++||.++.+++..+|.|.+||. +-
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsi----WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSI----WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeee----eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence            56788899999999999988899999    8885432211  222    3467899999999999999999999994 55


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      ..++.+      .+|.....+|.++++|..+++++-|+.|+.||++..      ..+..       ......+.++-.+|
T Consensus       542 ~~Vrqf------qGhtDGascIdis~dGtklWTGGlDntvRcWDlreg------rqlqq-------hdF~SQIfSLg~cP  602 (705)
T KOG0639|consen  542 TLVRQF------QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG------RQLQQ-------HDFSSQIFSLGYCP  602 (705)
T ss_pred             eeeecc------cCCCCCceeEEecCCCceeecCCCccceeehhhhhh------hhhhh-------hhhhhhheecccCC
Confidence            566777      678888999999999999999999999999998742      21111       11124566788889


Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCC
Q psy13998        209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGS  287 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~  287 (319)
                      .+..++++..++.+.+...++.....+      ..+...+.++.|.+-|++|++.+.|+-+..|. +-|..+...     
T Consensus       603 ~~dWlavGMens~vevlh~skp~kyql------hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----  671 (705)
T KOG0639|consen  603 TGDWLAVGMENSNVEVLHTSKPEKYQL------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----  671 (705)
T ss_pred             CccceeeecccCcEEEEecCCccceee------cccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-----
Confidence            999999999999999998887666666      45666789999999999999999999999999 677776664     


Q ss_pred             CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                        .....+.++.++.|.+++|+++.+..-.||
T Consensus       672 --kE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  672 --KESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             --cccCcceeeeeccCceEEEecCCCcceEEE
Confidence              455678999999999999999999776654

>KOG0647|consensus

Probab=99.82  E-value=8.9e-18  Score=123.27  Aligned_cols=268  Identities=11%  Similarity=0.090  Sum_probs=185.6

Q ss_pred             hhhhhhhcccccccCCCccchh-ccccceeeeecccCCCC-C---------cCCCCcceEEcCCCcEEEEeCCCCeEEEe
Q psy13998         14 FLLQTLLVSGIGQVGTTPRSQY-LQKRRLQFKIGSRGSEP-G---------CFTWPRGIAVGPDNSIVVADSSNHRVQVC   82 (319)
Q Consensus        14 ~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~~~-~---------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~   82 (319)
                      ..+-...++.|..++|||.... +..++++.++..|.... |         +-..|.+++|+.+|...++++.|+.+++ 
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~-   98 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL-   98 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE-
Confidence            3334444789999999995554 55888998888886443 2         3367789999999999999999999999 


Q ss_pred             ccccccccceeeE---EecCceeeEEcCCCc--EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCC
Q psy13998         83 FPHFDLKTNCVFL---AFTWPRGIAVGPDNS--IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  156 (319)
Q Consensus        83 ~~~~~~~~~~~~~---~~~~~~~l~~~~~g~--~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (319)
                         ||+.+++...   |-..+..+.+-+...  .+++++.|++|+.|| ....++..+..+       +++.++  +-..
T Consensus        99 ---wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-------eRvYa~--Dv~~  166 (347)
T KOG0647|consen   99 ---WDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-------ERVYAA--DVLY  166 (347)
T ss_pred             ---EEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-------ceeeeh--hccC
Confidence               9998875543   333556676665544  889999999999999 556666666443       223333  3334


Q ss_pred             eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC---CEEE
Q psy13998        157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG---RVIT  233 (319)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~---~~~~  233 (319)
                      .+.+.+..+..|.+|++++...     ...+..     ....-...++++..+...++.++-+|++.+...+.   ..-.
T Consensus       167 pm~vVata~r~i~vynL~n~~t-----e~k~~~-----SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPT-----EFKRIE-----SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcc-----hhhhhc-----CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence            5677788889999999974311     111111     11123457888888887788888899988876532   2112


Q ss_pred             EeCCC---CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc-eEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        234 SFGSE---GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ-FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       234 ~~~~~---~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                      .|...   .........+++|+|.|.-..+++.+.||+...||.+.+ .++..      +.+...+++..|+.+|.+|+-
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s------~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS------ETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc------CcCCCccceeEecCCCCEEEE
Confidence            22111   111223556789999998788999999999999997642 34444      466778999999999997654


Q ss_pred             e
Q psy13998        310 D  310 (319)
Q Consensus       310 ~  310 (319)
                      +
T Consensus       311 A  311 (347)
T KOG0647|consen  311 A  311 (347)
T ss_pred             E
Confidence            3

>PTZ00420 coronin; Provisional

Probab=99.82  E-value=6.3e-17  Score=135.09  Aligned_cols=218  Identities=10%  Similarity=0.084  Sum_probs=142.1

Q ss_pred             CCCCeEEEeccccccccceeeE----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcC-CCcE-EEEecC-CCccCCCCC
Q psy13998         74 SSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQS-DGTF-VGKFGS-MGNKAGQLE  145 (319)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~-~~~~-~~~~~~-~~~~~~~~~  145 (319)
                      +..+.+++    |+..+...+.    |...+.+++|+|+ ++++++++.|+.|++|+. ++.. ...+.. .....+|..
T Consensus        51 G~~gvI~L----~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         51 GLIGAIRL----ENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CceeEEEe----eecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            34567888    6654433333    3346789999997 689999999999999994 3321 111000 000145667


Q ss_pred             CceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        146 HPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       146 ~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                      .+.+++|+|++. ++++++.|+.|++||+...      +.+..+.       +...+.+++|+++|.++++++.++.|++
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg------~~~~~i~-------~~~~V~SlswspdG~lLat~s~D~~IrI  193 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENE------KRAFQIN-------MPKKLSSLKWNIKGNLLSGTCVGKHMHI  193 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCC------cEEEEEe-------cCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence            889999999875 4568889999999999753      2222221       1235788999999999999999999999


Q ss_pred             EeC-CCCEEEEeCCCCCCcccccCcc-----eEEEcCCCcEEEEeCCC----CEEEEEcCC--CceEEeecccCCCCCCC
Q psy13998        225 FDV-NGRVITSFGSEGSEEGQLKFPR-----GVAVDDQGYISVGDSGN----NRIQIFTPD--GQFLRAFGCWGSGDGEF  292 (319)
Q Consensus       225 ~~~-~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~g~~~v~~~~~----~~i~~~~~~--g~~~~~~~~~~~~~~~~  292 (319)
                      ||+ ++..+..+      .+|.....     ...+++++.++++++.+    +.|++||..  ++.+..+..    ....
T Consensus       194 wD~Rsg~~i~tl------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l----d~~~  263 (568)
T PTZ00420        194 IDPRKQEIASSF------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI----DNAS  263 (568)
T ss_pred             EECCCCcEEEEE------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe----cCCc
Confidence            996 45666655      33322221     12345787777776655    379999954  455554421    1111


Q ss_pred             CCcceEEEc-cCCcEEEEeCCCCeEEeC
Q psy13998        293 KGLEGVAVM-SNGNILVCDRENHRIQVF  319 (319)
Q Consensus       293 ~~~~~l~~~-~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+. -.++ ++|.+|+++..|+.|++|
T Consensus       264 ~~L~-p~~D~~tg~l~lsGkGD~tIr~~  290 (568)
T PTZ00420        264 APLI-PHYDESTGLIYLIGKGDGNCRYY  290 (568)
T ss_pred             cceE-EeeeCCCCCEEEEEECCCeEEEE
Confidence            1111 1333 457899999999999998

>KOG0308|consensus

Probab=99.82  E-value=1.4e-18  Score=139.73  Aligned_cols=232  Identities=14%  Similarity=0.260  Sum_probs=175.4

Q ss_pred             ceEEcC-CCcEEEEeCCCCeEEEecccccccccee------e----EEecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-
Q psy13998         60 GIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCV------F----LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-  127 (319)
Q Consensus        60 ~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-  127 (319)
                      .+..+. +++++++++.|+.|+.    |+......      .    .|-..+++++...+++.+++++.|-+|++|+.. 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~----W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~  104 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRL----WSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK  104 (735)
T ss_pred             hccccCCCCceEEecCCCceEEE----eccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence            344444 6678999999999999    65533221      1    134467888888889899999999999999932 


Q ss_pred             C--cEEEEecCCCccCCCCCCceeEEE-eCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc---cCCcCCCCCCc
Q psy13998        128 G--TFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS---MGNKAGQLEHP  201 (319)
Q Consensus       128 ~--~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  201 (319)
                      +  -....+      ..|..++.++++ .++..++++++-|+.|.+||++....    +.+..+..   .....+.....
T Consensus       105 ~~~~c~sti------r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~----~l~~s~n~~t~~sl~sG~k~si  174 (735)
T KOG0308|consen  105 DNTFCMSTI------RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA----TLVASFNNVTVNSLGSGPKDSI  174 (735)
T ss_pred             CcchhHhhh------hcccchheeeeecccCceeEEecCCCccEEEEEccCcch----hhhhhccccccccCCCCCccce
Confidence            2  122333      457788999999 67889999999999999999984311    12222211   01112455677


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceE
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFL  279 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~  279 (319)
                      ++++..+.|.++++++.++.+++||+ ..+.+..+      .+|...+..+.+++||+.+++++.|++|++||..- +-+
T Consensus       175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             eeeecCCcceEEEecCcccceEEeccccccceeee------eccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            88999999999999999999999996 56667777      68888999999999999999999999999999643 445


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      .++      ..|...+|++..+|+=..+.+|+.|+.|.
T Consensus       249 ~T~------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~  280 (735)
T KOG0308|consen  249 ATY------IVHKEGVWALQSSPSFTHVYSGGRDGNIY  280 (735)
T ss_pred             eeE------EeccCceEEEeeCCCcceEEecCCCCcEE
Confidence            566      56777899999998877888888888775

>PTZ00420 coronin; Provisional

Probab=99.82  E-value=3.6e-17  Score=136.50  Aligned_cols=221  Identities=10%  Similarity=0.140  Sum_probs=146.3

Q ss_pred             CCcCCCCcceEEcCC-CcEEEEeCCCCeEEEecccccccccee-----------e-EEecCceeeEEcCCCc-EEEEcCC
Q psy13998         52 PGCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCV-----------F-LAFTWPRGIAVGPDNS-IVVADSS  117 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~-----------~-~~~~~~~~l~~~~~g~-~~~~~~~  117 (319)
                      .+|...|.+++|+|+ ++++++++.|+.|++    |++.+...           + .|...+.+++|+|++. ++++++.
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrI----WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRV----WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE----EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            567788999999996 789999999999999    88754321           1 1334678999999886 5567888


Q ss_pred             CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        118 NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       118 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      |+.|++|| ..++....+.       +...+.+++|+++|.++++++.++.|++||++..      +.+..+.      .
T Consensus       147 DgtIrIWDl~tg~~~~~i~-------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg------~~i~tl~------g  207 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQIN-------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ------EIASSFH------I  207 (568)
T ss_pred             CCeEEEEECCCCcEEEEEe-------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC------cEEEEEe------c
Confidence            99999999 4555554442       2245789999999999999999999999999853      3333332      1


Q ss_pred             CCCCc-----eeEEEcCCCcEEEEeCCC----CeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeC
Q psy13998        197 QLEHP-----HYIAVSNTNRVIVSDSNN----HRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDS  264 (319)
Q Consensus       197 ~~~~~-----~~~~~~~~g~~~v~~~~~----~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~  264 (319)
                      |....     ....+++++.++++.+.+    +.|++||..  +..+..+...    .. ..+.--.+++ +|.+|+++.
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld----~~-~~~L~p~~D~~tg~l~lsGk  282 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID----NA-SAPLIPHYDESTGLIYLIGK  282 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec----CC-ccceEEeeeCCCCCEEEEEE
Confidence            22111     112344677777665544    479999965  3444443111    11 1111123334 488999999


Q ss_pred             CCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        265 GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       265 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                      +|+.|++|+.....+..+...    .......+++|.|..
T Consensus       283 GD~tIr~~e~~~~~~~~l~~~----~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        283 GDGNCRYYQHSLGSIRKVNEY----KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCeEEEEEccCCcEEeeccc----ccCCCccceEEcccc
Confidence            999999999644444444221    123345678888763

>KOG0973|consensus

Probab=99.82  E-value=9e-18  Score=142.56  Aligned_cols=241  Identities=15%  Similarity=0.130  Sum_probs=172.5

Q ss_pred             CCcceEEcCCCcEEEEeC--CCCeEEEeccccccccc--------ee--------eEEecCceeeEEcCCCcEEEEcCCC
Q psy13998         57 WPRGIAVGPDNSIVVADS--SNHRVQVCFPHFDLKTN--------CV--------FLAFTWPRGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~--~~~~v~~~~~~~~~~~~--------~~--------~~~~~~~~~l~~~~~g~~~~~~~~~  118 (319)
                      .+..|.++|+|..+++++  .|+.+++    |+.+.-        ..        ..|...+.++.|++||+.+++++.|
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~i----W~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVI----WSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             eEEEEEecCCceeEecCCcccccccee----eccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            378899999999999999  7888889    544221        00        0144577899999999999999999


Q ss_pred             CeEEEEcCCC-cEEEEecC------------CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCcee
Q psy13998        119 HRVQVFQSDG-TFVGKFGS------------MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV  185 (319)
Q Consensus       119 ~~i~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  185 (319)
                      +.|.+|...+ ..-..+..            .....+|...+.+++++|++.++++.+.|++|.+|+..+-      ..+
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF------~~~  164 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF------ELL  164 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc------eee
Confidence            9999998552 00001100            0011457788899999999999999999999999998742      333


Q ss_pred             eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998        186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~  264 (319)
                      ..+      .+|...+.++.|||-|+++++-+.|+.|++|.. +-...+.+..+-...........+.|+|||.++++..
T Consensus       165 ~vl------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  165 KVL------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             eee------ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            333      567788999999999999999999999999995 3344444422211122223456789999999888764


Q ss_pred             ----CCCEEEEEcCCCc-eEEeecccCCCCCCCCCcceEEEcc------CC-----------cEEEEeCCCCeEEeC
Q psy13998        265 ----GNNRIQIFTPDGQ-FLRAFGCWGSGDGEFKGLEGVAVMS------NG-----------NILVCDRENHRIQVF  319 (319)
Q Consensus       265 ----~~~~i~~~~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~------~g-----------~~~v~~~~~~~i~v~  319 (319)
                          ....+.+++.++- .-..+      -+|...+..+.|+|      ..           .+.++++.|++|.||
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~L------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDL------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             hccCCcceeEEEecCCceeeeee------ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence                3456777776432 22333      46777778888876      11           167899999999998

>KOG1332|consensus

Probab=99.81  E-value=2e-18  Score=123.03  Aligned_cols=240  Identities=14%  Similarity=0.173  Sum_probs=169.2

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee---EEe----cCceeeEEcC--CCcEEEEcCCCCeEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF---LAF----TWPRGIAVGP--DNSIVVADSSNHRVQ  122 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~~~~l~~~~--~g~~~~~~~~~~~i~  122 (319)
                      ..|-+.++.+..+--|+.+++++.|++|++    |....++..   .++    ..+..+++..  -|.++++++.+++|.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkI----f~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKI----FEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEE----EEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            456778888888888999999999999999    988765531   222    2446677765  589999999999999


Q ss_pred             EEcC-CCcEEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        123 VFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       123 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      +|.. +|...+...    ...|...++++++.|.  |-++++++.||.|.+++.+..-    +-....+     ...|..
T Consensus        84 iWke~~g~w~k~~e----~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g----~w~t~ki-----~~aH~~  150 (299)
T KOG1332|consen   84 IWKEENGRWTKAYE----HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG----GWTTSKI-----VFAHEI  150 (299)
T ss_pred             EEecCCCchhhhhh----hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC----Cccchhh-----hhcccc
Confidence            9994 443222211    1456678899999884  6788999999999988776420    0000000     123334


Q ss_pred             CceeEEEcCC---C-----------cEEEEeCCCCeEEEEeCCCC---EEEEeCCCCCCcccccCcceEEEcCCC----c
Q psy13998        200 HPHYIAVSNT---N-----------RVIVSDSNNHRVQIFDVNGR---VITSFGSEGSEEGQLKFPRGVAVDDQG----Y  258 (319)
Q Consensus       200 ~~~~~~~~~~---g-----------~~~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g----~  258 (319)
                      ..+++++.|.   |           +.++++..|+.|.+|..+..   .-..+      .+|..+++.+++.|.-    .
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l------~~H~dwVRDVAwaP~~gl~~s  224 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL------EGHKDWVRDVAWAPSVGLPKS  224 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh------hhcchhhhhhhhccccCCCce
Confidence            4455555543   2           45899999999999996542   22223      6788899999999873    4


Q ss_pred             EEEEeCCCCEEEEEcCCCc---eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        259 ISVGDSGNNRIQIFTPDGQ---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+++++.|+++.+|..+.+   -..++.     ......++.+.|+..|++++.++.|+.|.+|
T Consensus       225 ~iAS~SqDg~viIwt~~~e~e~wk~tll-----~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  225 TIASCSQDGTVIIWTKDEEYEPWKKTLL-----EEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             eeEEecCCCcEEEEEecCccCccccccc-----ccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            7889999999999995422   111110     1223457999999999999999999999987

>KOG0274|consensus

Probab=99.81  E-value=2.3e-17  Score=137.19  Aligned_cols=228  Identities=17%  Similarity=0.356  Sum_probs=175.0

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecC-ce-eeEEcCCCcEEEEcCCCCeEEEEc-CC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW-PR-GIAVGPDNSIVVADSSNHRVQVFQ-SD  127 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~-~l~~~~~g~~~~~~~~~~~i~~~~-~~  127 (319)
                      ..||...++++++...+.++++++.|.++++    |+..+++....+.. .. ...++-...+.++++.|.+|++|+ .+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv----Wd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n  320 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERV----WDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTN  320 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEe----EecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccC
Confidence            4678899999999887889999999999999    99988888776552 22 223333456778889999999999 66


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      +..+..+      .+|...+.++.++  +.++++++.++.|.+|+...      ++++..+      .+|...+.++.++
T Consensus       321 ~~~l~l~------~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~------~~cl~sl------~gH~~~V~sl~~~  380 (537)
T KOG0274|consen  321 GACLNLL------RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT------GKCLKSL------SGHTGRVYSLIVD  380 (537)
T ss_pred             cceEEEe------ccccccEEEEEec--CCEEEEEecCceEEEEEhhh------ceeeeee------cCCcceEEEEEec
Confidence            7777777      4477778888776  78999999999999999873      3666666      5577788888887


Q ss_pred             CCCcEEEEeCCCCeEEEEeCCCC--EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVNGR--VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      .. ..+++++.++.|++||....  .+..+      .++...+.++.+  .++++++++.|+.|++|| .+++.++.+  
T Consensus       381 ~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl------~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~--  449 (537)
T KOG0274|consen  381 SE-NRLLSGSLDTTIKVWDLRTKRKCIHTL------QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTL--  449 (537)
T ss_pred             Cc-ceEEeeeeccceEeecCCchhhhhhhh------cCCccccccccc--ccceeEeccccccEEEeecccCceeeee--
Confidence            65 78889999999999997654  44444      344444444443  468999999999999999 578888887  


Q ss_pred             cCCCCC-CCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDG-EFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~-~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                          .+ +...+..+++.  ...+++.+.++.+++|
T Consensus       450 ----~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  450 ----EGRHVGGVSALALG--KEEILCSSDDGSVKLW  479 (537)
T ss_pred             ----ccCCcccEEEeecC--cceEEEEecCCeeEEE
Confidence                33 44566666665  2578888899999887

>KOG0277|consensus

Probab=99.81  E-value=1.2e-17  Score=119.69  Aligned_cols=226  Identities=15%  Similarity=0.210  Sum_probs=165.4

Q ss_pred             cceEEcC--CCcEEEEeC------CCCeEEEeccccccccceee---EEe---cCceeeEEcCCC-cEEEEcCCCCeEEE
Q psy13998         59 RGIAVGP--DNSIVVADS------SNHRVQVCFPHFDLKTNCVF---LAF---TWPRGIAVGPDN-SIVVADSSNHRVQV  123 (319)
Q Consensus        59 ~~v~~~~--~g~~~~~~~------~~~~v~~~~~~~~~~~~~~~---~~~---~~~~~l~~~~~g-~~~~~~~~~~~i~~  123 (319)
                      .++.|+|  ++++.++..      ++|++.+    .++...+.+   .++   +...+++++++. ++++++++||.+++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~i----le~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl   87 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFI----LEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL   87 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEE----EecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence            4567776  455544432      4678888    555322222   222   366889999874 68888899999999


Q ss_pred             Ec--CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        124 FQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       124 ~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      ||  +..+++..+      ..|...+.++.+.+ .+..+++.+.|++|++|+.+-.      .-+.++      .++...
T Consensus        88 ~d~~~~s~Pi~~~------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~------~Sv~Tf------~gh~~~  149 (311)
T KOG0277|consen   88 FDLTMPSKPIHKF------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP------NSVQTF------NGHNSC  149 (311)
T ss_pred             eccCCCCcchhHH------HhhhhheEEeccccccceeEEeeccCCceEeecCCCC------cceEee------cCCccE
Confidence            99  344566666      56777888898887 5678888899999999998743      333444      445566


Q ss_pred             ceeEEEcCC-CcEEEEeCCCCeEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCC-
Q psy13998        201 PHYIAVSNT-NRVIVSDSNNHRVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPD-  275 (319)
Q Consensus       201 ~~~~~~~~~-g~~~v~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~-  275 (319)
                      +...+++|. .+++.+.+.|+.+++||.  .|+... +      ..|...+.+..++.- .+++++++.|+.|+.||.. 
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i------~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-I------EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-E------EeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence            778889874 589999999999999994  355444 4      445556777777754 4799999999999999943 


Q ss_pred             -CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        276 -GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       276 -g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                       -..+..+      .+|.-.+..+.++|.-. ++++++.|=++|+|
T Consensus       223 ~r~pl~eL------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw  262 (311)
T KOG0277|consen  223 LRTPLFEL------NGHGLAVRKVKFSPHHASLLASASYDMTVRIW  262 (311)
T ss_pred             ccccceee------cCCceEEEEEecCcchhhHhhhccccceEEec
Confidence             2345555      57778899999999865 99999999999998

>KOG0639|consensus

Probab=99.80  E-value=2.1e-18  Score=135.10  Aligned_cols=228  Identities=11%  Similarity=0.176  Sum_probs=175.2

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee---EEe------cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF---LAF------TWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      +-|.+++++...+..++++ .+-|++    |++...+..   .++      ..+..+.+.+||+-+++++...++.+||.
T Consensus       420 EvVcAvtIS~~trhVyTgG-kgcVKV----Wdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  420 EVVCAVTISNPTRHVYTGG-KGCVKV----WDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             cEEEEEEecCCcceeEecC-CCeEEE----eeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            4456788887766666654 688999    887533221   122      25678889999998888888889999994


Q ss_pred             CCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      ...   +..++.      ..-....+++++||.++.+++..+|.|.+||+..+      .+++.+      .++.....+
T Consensus       495 AapTprikaelt------ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------~~Vrqf------qGhtDGasc  556 (705)
T KOG0639|consen  495 AAPTPRIKAELT------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------TLVRQF------QGHTDGASC  556 (705)
T ss_pred             cCCCcchhhhcC------CcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------eeeecc------cCCCCCcee
Confidence            321   111121      11123477899999999999999999999999865      556666      667788899


Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEee
Q psy13998        204 IAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF  282 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~  282 (319)
                      |.++++|.-++++.-|+.|+.||. .++.+.+       ......+.++-..|.+.+++.+..++.+.+....+.....+
T Consensus       557 Idis~dGtklWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql  629 (705)
T KOG0639|consen  557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL  629 (705)
T ss_pred             EEecCCCceeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccCcEEEEecCCccceee
Confidence            999999999999999999999995 5554433       22345678888999999999999999999999777665566


Q ss_pred             cccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                            ..|...+.++.|.+-|++|++.+.|+.+..|
T Consensus       630 ------hlheScVLSlKFa~cGkwfvStGkDnlLnaw  660 (705)
T KOG0639|consen  630 ------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  660 (705)
T ss_pred             ------cccccEEEEEEecccCceeeecCchhhhhhc
Confidence                  4678899999999999999999999988776

>KOG1408|consensus

Probab=99.80  E-value=4.1e-18  Score=138.91  Aligned_cols=238  Identities=17%  Similarity=0.260  Sum_probs=179.7

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCC---CcEEEEcCCCCeEEEEcC--
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPD---NSIVVADSSNHRVQVFQS--  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~---g~~~~~~~~~~~i~~~~~--  126 (319)
                      ..+.+|+++|+|+.++++..-|.+++    +++.......    |-..+.++.++..   .+++++++.+.-|.+||.  
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrV----y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRV----YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEE----EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            56789999999999999999999999    8886544333    4456788888743   468899999999999994  


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      +-.++..+      .+|...++++.|..+|  ...++++.|+.|. |+...+  ..+|....+.    .........+.|
T Consensus       536 ny~l~qtl------d~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk--~~~g~~f~r~----t~t~~ktTlYDm  602 (1080)
T KOG1408|consen  536 NYDLVQTL------DGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQK--ASSGRLFPRH----TQTLSKTTLYDM  602 (1080)
T ss_pred             ccchhhhh------cccccceeEEEEeecCCceEEEeccCchhhh-eehhcc--ccCceecccc----ccccccceEEEe
Confidence            33344444      5677888999988766  6677887777665 332210  0011111000    001112345789


Q ss_pred             EEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEee
Q psy13998        205 AVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAF  282 (319)
Q Consensus       205 ~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~  282 (319)
                      +++|..++.++++.|..|++|+. +|+..+.|...   ..+...+..+..+|.|.++++...|.++.+|| ..|+.+.++
T Consensus       603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs---~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS---RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             eeCCCcceEEEEecccceEEEeccccceeeeeccc---ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            99999999999999999999996 67777777433   23334567789999999999999999999999 688888888


Q ss_pred             cccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                            .+|...++++.|.+|-+.+++.+.|+.|-||
T Consensus       680 ------~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  680 ------TGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             ------cCcchheeeeeecccchhheeecCCceEEEE
Confidence                  7899999999999999999999999999998

>KOG1274|consensus

Probab=99.79  E-value=7.6e-17  Score=134.77  Aligned_cols=236  Identities=13%  Similarity=0.187  Sum_probs=166.8

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      +|...-..|+++++|+.+++++.|+.|++    |+.... ....    .-..+.+++.  ..+.+++++.+++|.+|. +
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~----~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRK----WKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEE----eecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCC
Confidence            45566789999999999999999999999    655333 1111    1112334443  456889999999999998 4


Q ss_pred             CCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      ++.   .+.++.         -....++++.+|++.+.++.|-.|++.+....      .....+      .++...+.+
T Consensus        85 s~~~~~iL~Rft---------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------s~~~~l------rgh~apVl~  143 (933)
T KOG1274|consen   85 SGEEDTILARFT---------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------SQEKVL------RGHDAPVLQ  143 (933)
T ss_pred             CCCccceeeeee---------ccceEEEEecCCcEEEeecCceeEEEEecccc------chheee------cccCCceee
Confidence            443   334442         34578999999999999999999999887631      222222      445667788


Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcc-c-ccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceE
Q psy13998        204 IAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEG-Q-LKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFL  279 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~  279 (319)
                      +.++|++.++++...+|.|++|+.+ +.....+........ . ......++|+|+|.-|+.-..++.|.+|++.| ...
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            9999999999999999999999975 444444432221111 1 12245689999976666667889999999765 333


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+..    ..+......+.|+|+|.+++++..+|.|.||
T Consensus       224 f~Lr~----~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  224 FKLRD----KLSSSKFSDLQWSPNGKYIAASTLDGQILVW  259 (933)
T ss_pred             eeecc----cccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence            33321    1223337889999999999999999999998

>KOG0299|consensus

Probab=99.79  E-value=3.2e-17  Score=126.85  Aligned_cols=233  Identities=17%  Similarity=0.225  Sum_probs=164.5

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      +|...+.++++++||++++++..+..|.+    |+..+.+.+..+    ..+.+++|-..-.-+++++.|..|.+|+.+-
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~I----w~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQI----WDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEE----ecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            56677889999999999999999999999    888776665533    3667888876555666777899999999443


Q ss_pred             -cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        129 -TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                       ..+.++      .+|...+.+|....-++.+-.+..|.++++|++..     +.+++.        .++...+.++++-
T Consensus       276 ~s~vetl------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-----esqlif--------rg~~~sidcv~~I  336 (479)
T KOG0299|consen  276 LSYVETL------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-----ESQLIF--------RGGEGSIDCVAFI  336 (479)
T ss_pred             hHHHHHH------hCCccceeeechhcccceEEeccccceeEEEeccc-----cceeee--------eCCCCCeeeEEEe
Confidence             333333      56767777777666677777777999999999742     112222        2233466777775


Q ss_pred             CCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC---CC---cccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CC---
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEG---SE---EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DG---  276 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~---~~---~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g---  276 (319)
                      . ...|++++.+|.|.+|+.. -+++.......   ..   ..+..++++++.-|...++++++.+|.|++|-. +|   
T Consensus       337 n-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  337 N-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             c-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            4 3578999999999999953 33443332111   00   111237899999999899999999999999984 34   


Q ss_pred             -ceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeE
Q psy13998        277 -QFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRI  316 (319)
Q Consensus       277 -~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i  316 (319)
                       +++..+       .....+++|+|+++|+ +++..+...++
T Consensus       416 i~~l~~l-------s~~GfVNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  416 INLLYSL-------SLVGFVNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             cceeeec-------ccccEEEEEEEccCCCEEEEeccccccc
Confidence             233333       2345799999999999 56655555544

>KOG1538|consensus

Probab=99.79  E-value=1.3e-17  Score=135.20  Aligned_cols=265  Identities=13%  Similarity=0.113  Sum_probs=195.0

Q ss_pred             cccccccCCCccchhcccc--ceeeeeccc-----CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         21 VSGIGQVGTTPRSQYLQKR--RLQFKIGSR-----GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~--~~~~~~~~~-----~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ...|..++|.|+|.-|...  ...+.+...     ....||.+.|.+++++.||++|++++.|..|.+    |+.+-.+.
T Consensus        12 ~hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~----W~~klEG~   87 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVII----WTSKLEGI   87 (1081)
T ss_pred             ccchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEE----ecccccce
Confidence            3478889999999875544  333333332     234688899999999999999999999999999    77765555


Q ss_pred             eE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEE
Q psy13998         94 FL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF  171 (319)
Q Consensus        94 ~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~  171 (319)
                      +.  |-+.+.+|.|+|-...+++++-+ ..-.|+.+.+.+....       ...++.+.+|..||.+++.+..+|+|.+-
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k-------ss~R~~~CsWtnDGqylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK-------SSSRIICCSWTNDGQYLALGMFNGTISIR  159 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhh-------hheeEEEeeecCCCcEEEEeccCceEEee
Confidence            44  66688999999988877776543 5677875554433331       22566888999999999999999999987


Q ss_pred             ecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-----cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998        172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  246 (319)
                      +..+.       ....+...   -+.-..+.+++++|..     .++.+..-+.++..|..+|+.+..-      ..-.-
T Consensus       160 Nk~gE-------ek~~I~Rp---gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~------r~L~F  223 (1081)
T KOG1538|consen  160 NKNGE-------EKVKIERP---GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD------RALNF  223 (1081)
T ss_pred             cCCCC-------cceEEeCC---CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc------ccCCC
Confidence            76553       11112111   1223456889998742     3444444566777888888766433      22223


Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .|.++..-++|.++..++.++.+.+|..+|-.+.+++      ....++|.++..|+++.++.+..||+|..|
T Consensus       224 dP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  224 DPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVG------EQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             CchhheeccCCcEEEEccCCCceEEEeecCeEEeecc------ccceeEEEEEEccCCceEEEEEccCeeehh
Confidence            5888999999999999999999999999999888884      356789999999999999999999998754

>KOG2106|consensus

Probab=99.79  E-value=1.4e-16  Score=124.96  Aligned_cols=273  Identities=9%  Similarity=0.121  Sum_probs=185.3

Q ss_pred             hcccccccCCCccch--hc--cccceeeeecccCCCCCcC--------CCCcceEEcCCCc-EEEEeCCCCeEEEecccc
Q psy13998         20 LVSGIGQVGTTPRSQ--YL--QKRRLQFKIGSRGSEPGCF--------TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHF   86 (319)
Q Consensus        20 ~~~~i~~~~~~~~~~--~l--~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~   86 (319)
                      +..+|++++||+...  +|  ...+....+..|+.+.++.        +.+...+|.|.+. ++++. +.+.+.+    |
T Consensus       153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~-Gk~H~~F----w  227 (626)
T KOG2106|consen  153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC-GKGHLYF----W  227 (626)
T ss_pred             ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe-CCceEEE----E
Confidence            367899999988543  21  1223444456666555543        3456788999655 55554 5678999    7


Q ss_pred             ccccceeeE--------EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeE
Q psy13998         87 DLKTNCVFL--------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV  158 (319)
Q Consensus        87 ~~~~~~~~~--------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~  158 (319)
                      +..++....        ....+.+++|.++|+++-. ..++.|.+|++.+..+..-.     ..|...+.+++...+|.+
T Consensus       228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-DS~G~i~Iw~~~~~~~~k~~-----~aH~ggv~~L~~lr~Gtl  301 (626)
T KOG2106|consen  228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-DSGGNILIWSKGTNRISKQV-----HAHDGGVFSLCMLRDGTL  301 (626)
T ss_pred             EccCCceEEEeeccccccceEEEEEEEcCCCCEEee-cCCceEEEEeCCCceEEeEe-----eecCCceEEEEEecCccE
Confidence            776554443        1246789999999987554 45789999997665433322     346678899999999987


Q ss_pred             EEEeCCCCEEEEEecCCceee------ecCceeeeecc--------------cC--------CcCCCCCCceeEEEcCCC
Q psy13998        159 IVSDSNNHRVQIFDVNGRVFQ------SDGTFVGKFGS--------------MG--------NKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~--------------~~--------~~~~~~~~~~~~~~~~~g  210 (319)
                      +- ++.|..|..||-+=+...      ..|........              .+        ....+.....+++.+|+.
T Consensus       302 lS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~  380 (626)
T KOG2106|consen  302 LS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK  380 (626)
T ss_pred             ee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence            66 889999999984321100      00100000000              00        012334456789999999


Q ss_pred             cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCC
Q psy13998        211 RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDG  290 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~  290 (319)
                      .+|++++.++.+.+|+ +-++....       .......++.|+|.| .++.+...|+..++|.+.+.+-++      ..
T Consensus       381 ~q~~T~gqdk~v~lW~-~~k~~wt~-------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~------~~  445 (626)
T KOG2106|consen  381 NQLLTCGQDKHVRLWN-DHKLEWTK-------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI------HT  445 (626)
T ss_pred             hheeeccCcceEEEcc-CCceeEEE-------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE------Ee
Confidence            9999999999999999 44444332       112345788999999 888999999999999666555555      22


Q ss_pred             CCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        291 EFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       291 ~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ....++.+.++|+|.+++.++.|+.|.+|
T Consensus       446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            35678999999999999999999999886

>KOG0308|consensus

Probab=99.79  E-value=2e-17  Score=133.32  Aligned_cols=224  Identities=14%  Similarity=0.228  Sum_probs=171.2

Q ss_pred             CccchhccccceeeeecccCCC--------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--
Q psy13998         30 TPRSQYLQKRRLQFKIGSRGSE--------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--   93 (319)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--   93 (319)
                      .|.+++|.+++.+..+..|...              ..|-+++..++...+|+.+++++.|-+|++    |+.+....  
T Consensus        34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~----W~~~~~~~~c  109 (735)
T KOG0308|consen   34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV----WNAHKDNTFC  109 (735)
T ss_pred             CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE----eecccCcchh
Confidence            5677789999888887777322              124578899999999999999999999999    77654431  


Q ss_pred             ----eEEecCceeeEE-cCCCcEEEEcCCCCeEEEEcCC-Cc--EEEEecC---CCccCCCCCCceeEEEeCCCeEEEEe
Q psy13998         94 ----FLAFTWPRGIAV-GPDNSIVVADSSNHRVQVFQSD-GT--FVGKFGS---MGNKAGQLEHPHYIAVSNTNRVIVSD  162 (319)
Q Consensus        94 ----~~~~~~~~~l~~-~~~g~~~~~~~~~~~i~~~~~~-~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~g~~~~~~  162 (319)
                          -.|-..+.++++ .++..++++++-|+.|++||.+ |.  .+..+..   .....++...+.+++..+.|.+++++
T Consensus       110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG  189 (735)
T KOG0308|consen  110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG  189 (735)
T ss_pred             HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence                125668899998 7777899999999999999944 31  2222211   11123566778999999999999999


Q ss_pred             CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCC
Q psy13998        163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSE  241 (319)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~  241 (319)
                      +..+-+++||.++.      +.+..+      .+|...+..+.++++|+.+++++.|+.|++||... +.+.++      
T Consensus       190 gtek~lr~wDprt~------~kimkL------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~------  251 (735)
T KOG0308|consen  190 GTEKDLRLWDPRTC------KKIMKL------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY------  251 (735)
T ss_pred             CcccceEEeccccc------cceeee------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE------
Confidence            99999999999854      223333      46778889999999999999999999999999754 455555      


Q ss_pred             cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~  275 (319)
                      ..|...+.++..+|+=..+.+++.++.|+.-+..
T Consensus       252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             EeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            4555568888888887788888899999988843

>KOG1063|consensus

Probab=99.79  E-value=4.7e-17  Score=132.04  Aligned_cols=287  Identities=11%  Similarity=0.153  Sum_probs=200.9

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC---------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP---------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPH   85 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~   85 (319)
                      ++=|.++.|+|.+..|.+++.+.++-.|....               |.-..-++.-++++++.+++.+..|..+.    
T Consensus       267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl----  342 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL----  342 (764)
T ss_pred             ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE----
Confidence            67788999999998888888888776664322               22233467789999999999999999999    


Q ss_pred             cccccceeeE-------EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeE
Q psy13998         86 FDLKTNCVFL-------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV  158 (319)
Q Consensus        86 ~~~~~~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~  158 (319)
                      |..+......       |+..+.+++++|.|.++++.+.|.+-++|.+.|+... +-....+.-|-....++++-+....
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-WHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc-eeeecccccccccceeeehccCCce
Confidence            6622222111       6678899999999999999999999999987665432 2222222455566788888876777


Q ss_pred             EEEeCCCCEEEEEecCCc----------------eeeecCceeeeec---------------------------------
Q psy13998        159 IVSDSNNHRVQIFDVNGR----------------VFQSDGTFVGKFG---------------------------------  189 (319)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~~---------------------------------  189 (319)
                      |+++...+-+++|+....                ...+++..+..++                                 
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence            888888888888876210                0000010000000                                 


Q ss_pred             ---------------ccCCcCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCC-EEEEeCCCCCCcccccCc
Q psy13998        190 ---------------SMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGR-VITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       190 ---------------~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~  248 (319)
                                     ......+|...+.+++++|+++++++++..     ..|++|+...- .+..+      ..|.-.+
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L------~~HsLTV  575 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL------EGHSLTV  575 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee------cccceEE
Confidence                           000012344455889999999999988753     46899997543 23334      6677788


Q ss_pred             ceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        249 RGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.|+|+|||+++++.+.|.++.+|.......-.+. ....+.|..-+++..|+|++.++++++.|..|++|
T Consensus       576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             EEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence            99999999999999999999999994221111111 11125788889999999999999999999999998

>KOG0313|consensus

Probab=99.78  E-value=7.1e-17  Score=122.09  Aligned_cols=244  Identities=16%  Similarity=0.220  Sum_probs=168.0

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEc---CCCcEEEEcCCCCeEEEEc-C
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVG---PDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~---~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      |-+++.+|...  ++.+++++.||.+++    |+........   +-..+..+++.   +....+++++.|.++++|. .
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~ri----Wd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRI----WDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEE----EecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence            44778888776  678999999999999    9885332222   22233334332   2234799999999999997 3


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee----ecCc---------eeeeecccCC
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ----SDGT---------FVGKFGSMGN  193 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~----~~~~---------~~~~~~~~~~  193 (319)
                      .+......  ...+.+|...+.++...++|..+++++.|..+.+|+......+    ...+         ..........
T Consensus       178 ~~~~~~~~--~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  178 VGENKVKA--LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             CchhhhhH--HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            33221111  1112478889999999999999999999999999993221110    0000         0000001111


Q ss_pred             cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998        194 KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF  272 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~  272 (319)
                      ..+|...+..+.+++ ....++.+-|.+|++||. .+.....+.       ......++...|..+++++++.+..|++|
T Consensus       256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-------~~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-------TNKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-------cCcceeEeecccccceeeecCCCCceeec
Confidence            246667778888887 455667788999999995 455544441       12245788899988999999999999999


Q ss_pred             cC---CCceE-EeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        273 TP---DGQFL-RAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       273 ~~---~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      |+   +|..+ .++      .+|.+.+.++.++|... ++++++.|+.+++|
T Consensus       328 DPR~~~gs~v~~s~------~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW  373 (423)
T KOG0313|consen  328 DPRTGDGSVVSQSL------IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW  373 (423)
T ss_pred             CCCCCCCceeEEee------ecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence            95   34443 344      68889999999999765 89999999999998

>KOG0646|consensus

Probab=99.78  E-value=8e-17  Score=124.88  Aligned_cols=204  Identities=10%  Similarity=0.135  Sum_probs=152.1

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC----
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD----  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~----  127 (319)
                      ..+.+++-+|+|.+++++...+.+++    |.+.++..+.    |++.++++.|+.||.++++++.|+.|.+|...    
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYl----WelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYL----WELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEE----EEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence            34688999999999999888999999    9998876654    77899999999999999999999999999622    


Q ss_pred             ------CcEEEEecCCCccCCCCCCceeEEEeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        128 ------GTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       128 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                            -++...+      ..|.-.++++.+.+.|  ..+++.+.|..+++||+...      .++..+.       ...
T Consensus       158 a~~~~~~~p~~~f------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------~LLlti~-------fp~  218 (476)
T KOG0646|consen  158 ADNDHSVKPLHIF------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------VLLLTIT-------FPS  218 (476)
T ss_pred             cccCCCccceeee------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc------eeeEEEe-------cCC
Confidence                  1233333      4566677888877653  56788899999999999853      4443331       234


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeCC---CCEE----EEeCCCC----CCccccc--CcceEEEcCCCcEEEEeCCC
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVN---GRVI----TSFGSEG----SEEGQLK--FPRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~~---~~~~----~~~~~~~----~~~~~~~--~~~~i~~~~~g~~~v~~~~~  266 (319)
                      .+.++++||.++.++++..+|.|++.+..   ++..    +......    ...++.+  .+++++++-||.++++++.|
T Consensus       219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence            57889999999888899999999988742   2111    1110000    0134444  78999999999999999999


Q ss_pred             CEEEEEcCC-CceEEee
Q psy13998        267 NRIQIFTPD-GQFLRAF  282 (319)
Q Consensus       267 ~~i~~~~~~-g~~~~~~  282 (319)
                      +.|.+||.. -+.++++
T Consensus       299 g~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  299 GKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             CCEEEEecchHHHHHHH
Confidence            999999953 4445544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.78  E-value=2.9e-15  Score=120.59  Aligned_cols=250  Identities=24%  Similarity=0.348  Sum_probs=158.9

Q ss_pred             CCCCcceEEcCCCcE-EEEeC---CCCeEEEeccccccccc-eeeEE-------ecCceeeEEcCCCc-EEEEcCCCCeE
Q psy13998         55 FTWPRGIAVGPDNSI-VVADS---SNHRVQVCFPHFDLKTN-CVFLA-------FTWPRGIAVGPDNS-IVVADSSNHRV  121 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~-~~~~~---~~~~v~~~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~g~-~~~~~~~~~~i  121 (319)
                      ...|..|++++++++ |++..   ..+.|..    |..... +.+..       -..|..++++++++ +|++...++.|
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~----~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v  111 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSS----YRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSV  111 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEE----EEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEE----EEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeE
Confidence            478899999998885 55544   4678888    766544 33332       23677899999986 67777788999


Q ss_pred             EEEc--CCCcEEEE---ecCCCc----cCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998        122 QVFQ--SDGTFVGK---FGSMGN----KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       122 ~~~~--~~~~~~~~---~~~~~~----~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                      .+++  .+|.....   +...+.    .......|+.+.++|+|+ +|+++-...+|.+|+.+...    +++.... ..
T Consensus       112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~----~~l~~~~-~~  186 (345)
T PF10282_consen  112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT----GKLTPVD-SI  186 (345)
T ss_dssp             EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-----TEEEEE-EE
T ss_pred             EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC----ceEEEee-cc
Confidence            9998  34554333   211111    012336789999999985 67778888999999987532    1111100 00


Q ss_pred             CCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC---CCE--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC
Q psy13998        192 GNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN---GRV--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS  264 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~  264 (319)
                        .......|..++++|++ .+|++...++.|.+|+.+   +..  +..+............+..|+++|||+ +|++..
T Consensus       187 --~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  187 --KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             --ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred             --ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence              02334679999999998 567888889999999844   322  222222111111223688999999996 788999


Q ss_pred             CCCEEEEEcCC---CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        265 GNNRIQIFTPD---GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       265 ~~~~i~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ..+.|.+|+.+   |++ ..+...   ......|++++++|+|+ +++++..++.|.+|
T Consensus       265 ~~~sI~vf~~d~~~g~l-~~~~~~---~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  265 GSNSISVFDLDPATGTL-TLVQTV---PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             TTTEEEEEEECTTTTTE-EEEEEE---EESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             cCCEEEEEEEecCCCce-EEEEEE---eCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            99999999952   333 222211   22344699999999998 77788888888875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0288|consensus

Probab=99.78  E-value=6.5e-18  Score=128.95  Aligned_cols=234  Identities=10%  Similarity=0.148  Sum_probs=172.8

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ  125 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~  125 (319)
                      ..|...++.+.|-++...|++++.|..|.+    |+....+.  ..    ....+..+.++++++.+++.+.++.+++|+
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~----W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKL----WNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhh----hhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            345678899999998888999999999999    87754431  11    233678999999999999999999999999


Q ss_pred             C-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        126 S-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       126 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      . +.....++      .+|...+.++.+.......|+++.|.+|+.||+....      .....       -.......|
T Consensus       248 vd~~r~~~TL------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~------C~kt~-------l~~S~cnDI  308 (459)
T KOG0288|consen  248 VDSLRLRHTL------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY------CSKTV-------LPGSQCNDI  308 (459)
T ss_pred             ccchhhhhhh------cccccceeeehhhccccceeeccccchhhhhhhhhhh------eeccc-------cccccccce
Confidence            4 44555555      5688888888887766558999999999999997431      11111       011222334


Q ss_pred             EEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc-eEEee
Q psy13998        205 AVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ-FLRAF  282 (319)
Q Consensus       205 ~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~-~~~~~  282 (319)
                      +..  ...+++++.++.|+.||. .+......      +. ...++++.++++|.-+.+.+.|+.+.++|..+. ....+
T Consensus       309 ~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv------~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  309 VCS--ISDVISGHFDKKVRFWDIRSADKTRSV------PL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             Eec--ceeeeecccccceEEEeccCCceeeEe------ec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence            443  567889999999999994 55555555      22 236889999999987788899999999996544 44444


Q ss_pred             cccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...+...+  ...+.+.|+|++.++++|+.|++|+||
T Consensus       380 sA~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW  414 (459)
T KOG0288|consen  380 SAEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIW  414 (459)
T ss_pred             eccccccc--cccceeEECCCCceeeeccCCCcEEEE
Confidence            33222222  237889999999999999999999998

>KOG0647|consensus

Probab=99.77  E-value=2.9e-16  Score=115.47  Aligned_cols=235  Identities=13%  Similarity=0.108  Sum_probs=160.4

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      -+.+..|+|+| ...++++++.|++|++    |+.+..+...      +-..+.+++|+.+|...++++-|+.+++||..
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~----wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRI----WEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEE----EEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            36788999999 4557779999999999    8876543322      22356899999999888888889999999944


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      ......+      ..|...+..+.+-+..  ..+++++.|++|+.||.+..      ..+.+...       ...  .-+
T Consensus       103 S~Q~~~v------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~------~pv~t~~L-------PeR--vYa  161 (347)
T KOG0647|consen  103 SGQVSQV------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS------NPVATLQL-------PER--VYA  161 (347)
T ss_pred             CCCeeee------eecccceeEEEEecCCCcceeEecccccceeecccCCC------Ceeeeeec-------cce--eee
Confidence            3345555      3455666777777644  48999999999999999843      33333211       111  223


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCE-E-EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-C--ceEE
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDVNGRV-I-TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-G--QFLR  280 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g--~~~~  280 (319)
                      .+-...+.+++..++.|.+|++.+.. . +...     .......++|++..+..-++.++-+|++.+...+ +  +.-.
T Consensus       162 ~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~-----SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  162 ADVLYPMAVVATAERHIAVYNLENPPTEFKRIE-----SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             hhccCceeEEEecCCcEEEEEcCCCcchhhhhc-----CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence            34345677888889999999974322 1 1111     1122346788888887777888989998887733 2  2222


Q ss_pred             eecccCC---CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        281 AFGCWGS---GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~~---~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++.....   .......+++|+|+|.-..+++.+.||+...|
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FW  278 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFW  278 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEe
Confidence            2222111   11224468999999987799999999999887

>KOG0646|consensus

Probab=99.77  E-value=1.5e-16  Score=123.43  Aligned_cols=229  Identities=11%  Similarity=0.171  Sum_probs=161.3

Q ss_pred             cEEEE-eCCCCeEEEeccccccccceeeE---Eec-CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC
Q psy13998         68 SIVVA-DSSNHRVQVCFPHFDLKTNCVFL---AFT-WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA  141 (319)
Q Consensus        68 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~---~~~-~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~  141 (319)
                      +++++ ......+.+    |.........   .++ .+.+++-+|+|.++++++..+.+++|. .+|..+..+      .
T Consensus        51 ~yllsaq~~rp~l~v----w~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~------~  120 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHV----WEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL------S  120 (476)
T ss_pred             hheeeecccCccccc----cccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH------H
Confidence            44443 344557777    7664333222   122 347888899999888887889999999 678877777      6


Q ss_pred             CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee---cCceeeeecccCCcCCCCCCceeEEEcCCC--cEEEEe
Q psy13998        142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS---DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSD  216 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~v~~  216 (319)
                      .|...++++.|+.||.++++++.|+.|.+|.+....-..   +.+.+..+      ..|.-.++.+.+.+.|  ..+++.
T Consensus       121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f------~~HtlsITDl~ig~Gg~~~rl~Ta  194 (476)
T KOG0646|consen  121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF------SDHTLSITDLQIGSGGTNARLYTA  194 (476)
T ss_pred             hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee------ccCcceeEEEEecCCCccceEEEe
Confidence            788899999999999999999999999999875321110   11222233      3455566777777543  467778


Q ss_pred             CCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC---CceE----Eeec----c
Q psy13998        217 SNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD---GQFL----RAFG----C  284 (319)
Q Consensus       217 ~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~---g~~~----~~~~----~  284 (319)
                      +.|..+++||.. |..+..+.       ....+.++++||-++.+.++..+|.|.+.+..   |+..    +...    .
T Consensus       195 S~D~t~k~wdlS~g~LLlti~-------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~  267 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTIT-------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ  267 (476)
T ss_pred             cCCceEEEEEeccceeeEEEe-------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence            889999999964 55555552       23457899999999988899999999988732   2111    1000    0


Q ss_pred             cCCCCCCCC--CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDGEFK--GLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~--~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .....+|..  .+++++++-||.++++|+.||.+.||
T Consensus       268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  268 INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence            001134544  89999999999999999999999998

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=2.4e-15  Score=120.96  Aligned_cols=233  Identities=16%  Similarity=0.261  Sum_probs=143.0

Q ss_pred             EEEEeCCCCeEEEecccccccccee---eEEe---cCceeeEEcCCCcE-EEEcCCCCeEEEEcC--CCcEEEEecCCCc
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNCV---FLAF---TWPRGIAVGPDNSI-VVADSSNHRVQVFQS--DGTFVGKFGSMGN  139 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~---~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~--~~~~~~~~~~~~~  139 (319)
                      +|++...++.|.+    |+..+.+.   ...+   ..+..++++|+++. |++...++.|..|+.  +++.. .....  
T Consensus         4 ~y~~~~~~~~I~~----~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~--   76 (330)
T PRK11028          4 VYIASPESQQIHV----WNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAES--   76 (330)
T ss_pred             EEEEcCCCCCEEE----EEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-Eeeee--
Confidence            6788888999999    88754332   2223   36788999999974 566666788988884  34332 11110  


Q ss_pred             cCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeC
Q psy13998        140 KAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDS  217 (319)
Q Consensus       140 ~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~  217 (319)
                        .....|..++++|+++. |++...++.|.+|+++.     ++........    ......|.+++++|+++ +|+++.
T Consensus        77 --~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~-----~g~~~~~~~~----~~~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         77 --PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK-----DGIPVAPIQI----IEGLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             --cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC-----CCCCCCceee----ccCCCcccEeEeCCCCCEEEEeeC
Confidence              11135789999999865 55555689999998752     1111111100    11224578899999985 557777


Q ss_pred             CCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC---Cce--EEeecccCCCCC
Q psy13998        218 NNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD---GQF--LRAFGCWGSGDG  290 (319)
Q Consensus       218 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~---g~~--~~~~~~~~~~~~  290 (319)
                      .++.|.+|+.+. ..+...............|..++++|+|+ +|++...++.|.+|+.+   ++.  +..+........
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            889999999643 21211000000001124588999999987 55666679999999953   332  223321111111


Q ss_pred             CCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        291 EFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       291 ~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ....+.+++++|+|+ +|+++..++.|.+|
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~  255 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDRTASLISVF  255 (330)
T ss_pred             CCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence            223456799999998 66666778888876

>KOG2048|consensus

Probab=99.76  E-value=1.1e-15  Score=123.81  Aligned_cols=273  Identities=15%  Similarity=0.089  Sum_probs=193.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC----------cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG----------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      ...|.+++++.....|+.+..+..+.+|....+          .-..+.+++|++.++ +++.+.+|.|..    ||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~E----wDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITE----WDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-EEeecCCceEEE----Eeccc
Confidence            577899999988888998888888888865433          225678999996665 556667899999    99887


Q ss_pred             ceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         91 NCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        91 ~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      .+....++    .+.+++.+|.+..+..++.+|.++.++.. ++.......    ..+..++.+++|++++..+++++.|
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l----~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL----MRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec----ccccceEEEEEecCCccEEEecccC
Confidence            77666544    56899999999888888889977777733 333322211    2334678999999999999999999


Q ss_pred             CEEEEEecCCceeeecCceee--eecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVG--KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE  242 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~  242 (319)
                      +.|++||....      ..+.  +....+.......-+.++.+-.++ .++++...|.|..||. .|..+..+      .
T Consensus       176 g~Iriwd~~~~------~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~------~  242 (691)
T KOG2048|consen  176 GVIRIWDVKSG------QTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH------S  242 (691)
T ss_pred             ceEEEEEcCCC------ceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh------h
Confidence            99999998743      2222  111111112223334566666555 5677777899999995 56666665      5


Q ss_pred             ccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      .+...+.+++.++++..+++++.|++|..|...+..-. +........|...+.++++.++  .+++++.|..+.+
T Consensus       243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-eeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            56667899999999888889899999999985543211 1111222567778899998876  7888888876653

>KOG1036|consensus

Probab=99.76  E-value=7.1e-16  Score=113.72  Aligned_cols=262  Identities=14%  Similarity=0.115  Sum_probs=177.8

Q ss_pred             hcccccccCCCccchhccccceeeeecccCCCCC-------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         20 LVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG-------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        20 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ..+.|+.+.|+|.+..|..++++..+..++....       +-..+...+|.++ ...++++-||.|++    +|+.+..
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~----~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRR----YDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEE----EEecCCc
Confidence            3788999999999999888888877655543321       2245678888764 45667788999999    8887654


Q ss_pred             eeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE-EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEE
Q psy13998         93 VFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV  168 (319)
Q Consensus        93 ~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i  168 (319)
                      ...   |-..+.+|...+....++++++|++|++||+-.+. ...+       .....+.++  +-.|+.++.++.+..+
T Consensus        87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-------d~~kkVy~~--~v~g~~LvVg~~~r~v  157 (323)
T KOG1036|consen   87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-------DQGKKVYCM--DVSGNRLVVGTSDRKV  157 (323)
T ss_pred             ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------ccCceEEEE--eccCCEEEEeecCceE
Confidence            433   44567889988877889999999999999955422 1111       111234444  4457778888889999


Q ss_pred             EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC-----EEEEeCCC---CC
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-----VITSFGSE---GS  240 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~-----~~~~~~~~---~~  240 (319)
                      .+||++...     .......     ....-...++++-|++.=|++++-+|+|.+=..+..     ....|...   ..
T Consensus       158 ~iyDLRn~~-----~~~q~re-----S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~  227 (323)
T KOG1036|consen  158 LIYDLRNLD-----EPFQRRE-----SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK  227 (323)
T ss_pred             EEEEccccc-----chhhhcc-----ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence            999997421     1110000     111224578999998778899999999887443221     11122111   11


Q ss_pred             CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        241 EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                      .......+++|+|+|--..|++++.||.|.+||. +-+.+..+      ......+..++|+.||.+++.++
T Consensus       228 ~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~------~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  228 DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL------AKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             CceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc------cCCCCceEEEEeccCCCeEEEEe
Confidence            1233456789999998788999999999999995 44556666      33345689999999999877765

>KOG1274|consensus

Probab=99.76  E-value=5.6e-16  Score=129.73  Aligned_cols=258  Identities=11%  Similarity=0.129  Sum_probs=181.1

Q ss_pred             hhcccccccCCCccchhccccceeeeecccCCCCC-----cC--CCCcceEEcCCCcEEEEeCCCCeEEEecccccccc-
Q psy13998         19 LLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG-----CF--TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT-   90 (319)
Q Consensus        19 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~--~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~-   90 (319)
                      ....+.+.+.+.|++..+.+...+..+..|....-     .+  ......++...+..|++++.+++|.+    +.... 
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~----y~fps~   86 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLR----YKFPSG   86 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEE----eeCCCC
Confidence            44677889999999999999888877766654332     11  11222334445668999999999999    65543 


Q ss_pred             --ceeeEEec-CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC
Q psy13998         91 --NCVFLAFT-WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH  166 (319)
Q Consensus        91 --~~~~~~~~-~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~  166 (319)
                        ...+..+. ....++++.+|+++++++.|-.|++.+ .+......+      .+|...+.++.++|.++++++...+|
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l------rgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL------RGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee------cccCCceeeeeEcCCCCEEEEEecCc
Confidence              23444555 457899999999999999999999999 555556666      56778889999999999999999999


Q ss_pred             EEEEEecCCceeeecCceeeeecccCCcCCC--CCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcc
Q psy13998        167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ--LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEG  243 (319)
Q Consensus       167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~  243 (319)
                      .|++|+++...      +...+.........  .....-++|+|+|..+++-..++.|.+|++.+ .....+..    ..
T Consensus       161 ~v~iw~~~~~~------~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~----~~  230 (933)
T KOG1274|consen  161 KVQIWDLQDGI------LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD----KL  230 (933)
T ss_pred             eEEEEEcccch------hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc----cc
Confidence            99999998542      22222211111111  12234579999976677777789999999865 33334321    11


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      .......+.|+|.|.+++++..++.|.+||.+....         ......+.+++|-|+.+
T Consensus       231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---------~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---------HEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---------ccccceeEEEecCCCCC
Confidence            122267899999999999999999999999764111         12334677888887765

>KOG2445|consensus

Probab=99.76  E-value=1.5e-15  Score=112.08  Aligned_cols=260  Identities=11%  Similarity=0.117  Sum_probs=164.2

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-eeeE-------EecCceeeEEcCC--CcEEEEcCCCCeE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-CVFL-------AFTWPRGIAVGPD--NSIVVADSSNHRV  121 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-------~~~~~~~l~~~~~--g~~~~~~~~~~~i  121 (319)
                      .+|.+-++++.|++-|+.+++++.|.+|.+    |+.... +.+.       +-..+..+.+.+-  |+++++++.|+++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI----~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKI----WDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEE----EeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            466788999999999999999999999999    774322 2221       3345667777653  8899999999999


Q ss_pred             EEEcCCCcEE----EEecCCCccCCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        122 QVFQSDGTFV----GKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       122 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      .+|....+..    .++............+.++.|.|  -|-.+++.+.||.+++|+.-...--..-++...+......+
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9998421100    01100000022335678999998  46788999999999999864321111112222222111112


Q ss_pred             C-CCCCceeEEEcCCC---cEEEEeCCC-----CeEEEEe--CCCCEEEEeCCCCCCcccccCcceEEEcCC-C---cEE
Q psy13998        196 G-QLEHPHYIAVSNTN---RVIVSDSNN-----HRVQIFD--VNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-G---YIS  260 (319)
Q Consensus       196 ~-~~~~~~~~~~~~~g---~~~v~~~~~-----~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g---~~~  260 (319)
                      + ......++.+++..   .++++++.+     +.+++|.  .+++....+...   .++...++.|+|.|+ |   .++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L---~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL---PDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc---CCCCCcceeeeeccccCCceeeE
Confidence            1 22334667777632   456666543     3555555  455333333211   456667899999997 4   477


Q ss_pred             EEeCCCCEEEEEcCCCce-------------EE--eecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        261 VGDSGNNRIQIFTPDGQF-------------LR--AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       261 v~~~~~~~i~~~~~~g~~-------------~~--~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++.|| |++|......             ..  .+........|...++.+.|+-.|.++.+.+.||.||+|
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence            8888888 9999844211             00  000111225677789999999999999999999999998

>KOG0305|consensus

Probab=99.75  E-value=1.1e-16  Score=128.74  Aligned_cols=239  Identities=9%  Similarity=0.094  Sum_probs=182.1

Q ss_pred             hhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCC--------CC-cCCCCcceEEcCCCcEEEEeC
Q psy13998          6 EAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PG-CFTWPRGIAVGPDNSIVVADS   74 (319)
Q Consensus         6 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~-~~~~~~~v~~~~~g~~~~~~~   74 (319)
                      ..++..++.+.....  ...++++.++++|.+|+.+.....+.+|+..        .+ |...+-++++.  +..+.+++
T Consensus       200 ylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  200 YLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             EEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec
Confidence            345555555444443  5789999999999999999988888888643        23 55667777776  77899999


Q ss_pred             CCCeEEEeccccccccceee-----EEecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCce
Q psy13998         75 SNHRVQVCFPHFDLKTNCVF-----LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~  148 (319)
                      .++.|..    +++......     .|-..+.+++++++++.+++++.|+.+.+||. .-.+...+      ..|...+.
T Consensus       278 r~~~I~~----~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~------~~H~aAVK  347 (484)
T KOG0305|consen  278 RDGKILN----HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF------TEHTAAVK  347 (484)
T ss_pred             CCCcEEE----EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE------eccceeee
Confidence            9999999    776543322     24557889999999999999999999999995 44455555      56778899


Q ss_pred             eEEEeC-CCeEEEEeC--CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC--CCCeEE
Q psy13998        149 YIAVSN-TNRVIVSDS--NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS--NNHRVQ  223 (319)
Q Consensus       149 ~l~~~~-~g~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--~~~~i~  223 (319)
                      +++|+| ...++++++  .|+.|++||..+.      ..+...       .....+..|.+++..+-+++..  ..+.|.
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g------~~i~~v-------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~  414 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTG------ARIDSV-------DTGSQVCSLIWSKKYKELLSTHGYSENQIT  414 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCC------cEeccc-------ccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence            999999 667888765  6789999998742      333332       2235678899998875555543  467899


Q ss_pred             EEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998        224 IFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       224 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~  275 (319)
                      +|. +.-..+..+      .+|...+..++++|||..+++++.|.++++|+.-
T Consensus       415 lw~~ps~~~~~~l------~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  415 LWKYPSMKLVAEL------LGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             EEeccccceeeee------cCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            999 454555666      7788889999999999999999999999999943

>KOG1273|consensus

Probab=99.75  E-value=1.3e-15  Score=112.89  Aligned_cols=234  Identities=9%  Similarity=0.114  Sum_probs=153.7

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVG  132 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~  132 (319)
                      ..++.|++.|.+++.+..+|+|.+    ||..|.....    |...+.+++|+++|+.+++.+.|..|.+|| ..|..++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI----~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVI----YDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEE----EEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence            467899999999999999999999    8887765443    455778999999999999999999999999 7888887


Q ss_pred             EecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      ++...       ..+....++|. .+.+++.--+..-.+.+....    ..+++..- ..   ......+....+++.|+
T Consensus       102 rirf~-------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~----~h~~Lp~d-~d---~dln~sas~~~fdr~g~  166 (405)
T KOG1273|consen  102 RIRFD-------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP----KHSVLPKD-DD---GDLNSSASHGVFDRRGK  166 (405)
T ss_pred             EEEcc-------CccceeeeccccCCeEEEEEecCCcEEEEecCC----ceeeccCC-Cc---cccccccccccccCCCC
Confidence            77432       45577788873 344443322222222322210    00111110 00   11112334456889999


Q ss_pred             EEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC--------ceE--E
Q psy13998        212 VIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG--------QFL--R  280 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g--------~~~--~  280 (319)
                      +++++...|.+.+|+... +.+..+..     .....+..|.++..|+.++....|..|+.|+...        ++-  .
T Consensus       167 yIitGtsKGkllv~~a~t~e~vas~ri-----ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~  241 (405)
T KOG1273|consen  167 YIITGTSKGKLLVYDAETLECVASFRI-----TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH  241 (405)
T ss_pred             EEEEecCcceEEEEecchheeeeeeee-----chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence            999999999999999654 44444421     1134678899999999999999999999998431        110  0


Q ss_pred             eecccCCCCCCCCCcceEEEccCCcEEEEeC-CCCeEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDR-ENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~-~~~~i~v~  319 (319)
                      .+..    -.....-..++|+.+|.++++++ ..+.++||
T Consensus       242 K~qD----vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW  277 (405)
T KOG1273|consen  242 KLQD----VVNKLQWKKCCFSGDGEYVCAGSARAHALYIW  277 (405)
T ss_pred             HHHH----HHhhhhhhheeecCCccEEEeccccceeEEEE
Confidence            0000    00011235688999998665554 45667776

>KOG0300|consensus

Probab=99.75  E-value=1.5e-16  Score=117.98  Aligned_cols=273  Identities=14%  Similarity=0.162  Sum_probs=193.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecc--cccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP--HFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~--~~~~~~   90 (319)
                      .++|..++......++.+.+.+.+..+|+..        .||...+.+|.|++.+.+++++++|++..+|.-  +|...+
T Consensus       148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~  227 (481)
T KOG0300|consen  148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPS  227 (481)
T ss_pred             ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCC
Confidence            5778777777777788888888888888765        467789999999999999999999999999431  011111


Q ss_pred             ---------ceeeE-------------------------Eec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEE
Q psy13998         91 ---------NCVFL-------------------------AFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFV  131 (319)
Q Consensus        91 ---------~~~~~-------------------------~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~  131 (319)
                               .++..                         .+.    .+.+..|...|+..++++.|.+..+|| ..|+++
T Consensus       228 ~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v  307 (481)
T KOG0300|consen  228 NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV  307 (481)
T ss_pred             CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee
Confidence                     00000                         011    112233344577888999999999999 788887


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      ..+      .+|....+..+-+|..+++++.+.|.+.++||.+..+     .-+..|      .+|....++..|..+ .
T Consensus       308 ~~L------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-----~sV~VF------QGHtdtVTS~vF~~d-d  369 (481)
T KOG0300|consen  308 NIL------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-----QSVAVF------QGHTDTVTSVVFNTD-D  369 (481)
T ss_pred             ccc------cCcchhccccccCCcceEEEEeccCceeEeccchhhc-----ceeeee------cccccceeEEEEecC-C
Confidence            777      5677777888889999999999999999999987321     222233      456667788888765 4


Q ss_pred             EEEEeCCCCeEEEEeCCCC--EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCC
Q psy13998        212 VIVSDSNNHRVQIFDVNGR--VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGD  289 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~  289 (319)
                      -+++++.+..|++||....  .+.++.       .-..++.++++..+.+++.-..+..|++||.+|..+..+... ...
T Consensus       370 ~vVSgSDDrTvKvWdLrNMRsplATIR-------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrt-sRq  441 (481)
T KOG0300|consen  370 RVVSGSDDRTVKVWDLRNMRSPLATIR-------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRT-SRQ  441 (481)
T ss_pred             ceeecCCCceEEEeeeccccCcceeee-------cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcc-ccc
Confidence            5788999999999996542  233331       123467889987777888888899999999999887766311 124


Q ss_pred             CCCCCcceEEEccCC--cEEEEeCCCCeEEeC
Q psy13998        290 GEFKGLEGVAVMSNG--NILVCDRENHRIQVF  319 (319)
Q Consensus       290 ~~~~~~~~l~~~~~g--~~~v~~~~~~~i~v~  319 (319)
                      +|...+.+++|..+-  .-+++++.|+.+.=|
T Consensus       442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             ccceeeeeeeccccCcccccccccccceeeee
Confidence            677788999997542  235566667665443

>KOG0274|consensus

Probab=99.75  E-value=9.5e-16  Score=127.65  Aligned_cols=221  Identities=17%  Similarity=0.332  Sum_probs=170.8

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCc
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGT  129 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~  129 (319)
                      ..+.+..+.  +..+++++.+.+|.+    |+..+.....     |...+.++++...+.++++++.|.++++|| .+|.
T Consensus       209 ~~~~~~q~~--~~~~~~~s~~~tl~~----~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  209 HVVLCLQLH--DGFFKSGSDDSTLHL----WDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             chhhhheee--cCeEEecCCCceeEE----eecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence            344455554  557888899999999    8887665544     455788999987678999999999999999 7888


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      ....+      .+|...+..+..  .+.+.++++.|.+|++|++..      +..+..+      .++...+.++.++  
T Consensus       283 C~~~l------~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n------~~~l~l~------~~h~~~V~~v~~~--  340 (537)
T KOG0274|consen  283 CTHSL------QGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN------GACLNLL------RGHTGPVNCVQLD--  340 (537)
T ss_pred             EEEEe------cCCCceEEEEEc--cCceEeeccCCceEEEEeccC------cceEEEe------ccccccEEEEEec--
Confidence            88888      455555554443  456778889999999999983      3555554      2355667777776  


Q ss_pred             CcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc--eEEeecccC
Q psy13998        210 NRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ--FLRAFGCWG  286 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~--~~~~~~~~~  286 (319)
                      +.++++++.++.|.+|+. .++.++.+      .+|...+.++.++.. ..+++++.|..|++||..+.  .+.++    
T Consensus       341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl------~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl----  409 (537)
T KOG0274|consen  341 EPLLVSGSYDGTVKVWDPRTGKCLKSL------SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL----  409 (537)
T ss_pred             CCEEEEEecCceEEEEEhhhceeeeee------cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh----
Confidence            678999999999999995 67888888      778888999988775 78899999999999996554  55555    


Q ss_pred             CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        287 SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                        .+|...+.++.+  .++++++++.|+.|++|
T Consensus       410 --~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~W  438 (537)
T KOG0274|consen  410 --QGHTSLVSSLLL--RDNFLVSSSADGTIKLW  438 (537)
T ss_pred             --cCCccccccccc--ccceeEeccccccEEEe
Confidence              456656655554  46899999999999998

>KOG2048|consensus

Probab=99.75  E-value=2.7e-15  Score=121.67  Aligned_cols=235  Identities=10%  Similarity=0.098  Sum_probs=169.3

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---E---ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---A---FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDG  128 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~  128 (319)
                      ..+.+||++.+.+.++.+..+|.|.+    |++..+-...   +   -..+.+++|.+.++++ +.+.++.|..|| .++
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEi----wN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLF-S~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEI----WNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLF-SSGLSGSITEWDLHTL  100 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEE----EccCCCceeeEEEecCCCCceeeEEEccCCeEE-eecCCceEEEEecccC
Confidence            56789999999899999999999999    6664322211   1   2266889999666554 555689999999 678


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      +....+...      -..+.+++.+|.+..+..++.+|.+..++.....+...    ..+      ........++++++
T Consensus       101 k~~~~~d~~------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~----r~l------~rq~sRvLslsw~~  164 (691)
T KOG2048|consen  101 KQKYNIDSN------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK----RSL------MRQKSRVLSLSWNP  164 (691)
T ss_pred             ceeEEecCC------CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE----eec------ccccceEEEEEecC
Confidence            887777433      35679999999998888888999777776654332211    111      22235678899999


Q ss_pred             CCcEEEEeCCCCeEEEEeC-CCCEEEE--eCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        209 TNRVIVSDSNNHRVQIFDV-NGRVITS--FGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      ++..+++++.||.|++||. .+..+..  ....+.......-+.++.+-.++ .++++...|.|.+|| ..|.+++.+  
T Consensus       165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~--  241 (691)
T KOG2048|consen  165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH--  241 (691)
T ss_pred             CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh--
Confidence            9998999999999999995 4554442  11111112122335677777665 557777789999999 568887777  


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                          ..+...+.+|+.++++..+++++.|++|-.
T Consensus       242 ----~~h~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  242 ----SCHDADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             ----hhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence                567888999999999888888888887643

>KOG0264|consensus

Probab=99.74  E-value=5.5e-16  Score=119.83  Aligned_cols=244  Identities=13%  Similarity=0.150  Sum_probs=169.2

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE--------------EecCceeeEEcCCCc-EEEEcCCCC
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--------------AFTWPRGIAVGPDNS-IVVADSSNH  119 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~g~-~~~~~~~~~  119 (319)
                      ..+..+..-|+.. ++++.+..+.|++    |+..+.....              |-..-.+++|++... .+++++.++
T Consensus       125 gEVnRaRymPQnp~iVAt~t~~~dv~V----fd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  125 GEVNRARYMPQNPNIVATKTSSGDVYV----FDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccchhhhhCCCCCcEEEecCCCCCEEE----EEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4455666667554 6666778889999    7764322111              222356788887653 678888899


Q ss_pred             eEEEEcCCCcEE--EEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        120 RVQVFQSDGTFV--GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       120 ~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      +|.+||.+....  ..........+|...+..++|++ ...+|.+.+.++.+.+||.+.. ..   +.      .....+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~---~~------~~~~~a  270 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS---KP------SHSVKA  270 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC---CC------cccccc
Confidence            999999443211  11111111256778889999998 5588999999999999998841 00   11      111245


Q ss_pred             CCCCceeEEEcCC-CcEEEEeCCCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEE
Q psy13998        197 QLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIF  272 (319)
Q Consensus       197 ~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~  272 (319)
                      |....++++|+|- +.++++++.|++|.+||+..  +.+..+      .++...+..+.|+|.. .++++.+.|+++.+|
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~------e~H~dev~~V~WSPh~etvLASSg~D~rl~vW  344 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF------EGHEDEVFQVEWSPHNETVLASSGTDRRLNVW  344 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec------cCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence            6677899999985 57888888999999999653  344555      6777789999999985 699999999999999


Q ss_pred             cCC--CceEE-eecccC------CCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        273 TPD--GQFLR-AFGCWG------SGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       273 ~~~--g~~~~-~~~~~~------~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      |..  |+... ..+..+      ...+|...+..+.|+|+.. .+++...|+.++||
T Consensus       345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence            943  22211 000000      1146788899999999976 88888999999998

>KOG1273|consensus

Probab=99.74  E-value=1.5e-15  Score=112.55  Aligned_cols=276  Identities=12%  Similarity=0.132  Sum_probs=176.2

Q ss_pred             hhhcccccccCCCccchhccccceeeeecccC--------CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc
Q psy13998         18 TLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRG--------SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        18 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      ++......++.|++.|.+|+.+=.+..+-+|+        ...+|...+.+++|+++|+.+++++.|..+..    ||+.
T Consensus        20 tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l----wDl~   95 (405)
T KOG1273|consen   20 TLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL----WDLL   95 (405)
T ss_pred             eccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE----Eecc
Confidence            33334466788999999999987666655553        44678899999999999999999999999999    9987


Q ss_pred             cceeeEEe--c-CceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCC-CCceeEEEeCCCeEEEEeCC
Q psy13998         90 TNCVFLAF--T-WPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQL-EHPHYIAVSNTNRVIVSDSN  164 (319)
Q Consensus        90 ~~~~~~~~--~-~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~~~~  164 (319)
                      .+.....+  + .+.+..++|.. +..++.--+..-.+.+.+......+....  .+.. ..+....+++.|++++++..
T Consensus        96 ~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~--d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen   96 KGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDD--DGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             CCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCC--ccccccccccccccCCCCEEEEecC
Confidence            66655543  3 34677777753 44444332222233332211111221111  1111 23344468889999999999


Q ss_pred             CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCc-c
Q psy13998        165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEE-G  243 (319)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~  243 (319)
                      .|.+.+|+..+.      +++..+...     ....+..+.++..|+.++..+.|..|+.|+...-...  +..+... .
T Consensus       174 KGkllv~~a~t~------e~vas~rit-----s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~--~r~~e~e~~  240 (405)
T KOG1273|consen  174 KGKLLVYDAETL------ECVASFRIT-----SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE--GRDGEVEPE  240 (405)
T ss_pred             cceEEEEecchh------eeeeeeeec-----hheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc--CccCCcChh
Confidence            999999998865      333333211     1234566888889999999999999999985411100  0000000 0


Q ss_pred             -------cccCcceEEEcCCCcEEEEeC-CCCEEEEEc-CCCceEEeecccCCCCCCC-CCcceEEEccCCcEEEEeCCC
Q psy13998        244 -------QLKFPRGVAVDDQGYISVGDS-GNNRIQIFT-PDGQFLRAFGCWGSGDGEF-KGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       244 -------~~~~~~~i~~~~~g~~~v~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~g~~~v~~~~~  313 (319)
                             ....-..++|+.+|.++++++ ..+.+++|. ..|.+++.+.      +.. ....++.|+|-..++++- ..
T Consensus       241 ~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh------G~kgE~l~DV~whp~rp~i~si-~s  313 (405)
T KOG1273|consen  241 HKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH------GTKGEELLDVNWHPVRPIIASI-AS  313 (405)
T ss_pred             HHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec------CCchhheeecccccceeeeeec-cC
Confidence                   011235789999998777665 457899999 4688888873      332 345566777764444444 66


Q ss_pred             CeEEeC
Q psy13998        314 HRIQVF  319 (319)
Q Consensus       314 ~~i~v~  319 (319)
                      |.+++|
T Consensus       314 g~v~iw  319 (405)
T KOG1273|consen  314 GVVYIW  319 (405)
T ss_pred             CceEEE
Confidence            777777

>KOG2055|consensus

Probab=99.73  E-value=2.8e-16  Score=121.87  Aligned_cols=236  Identities=13%  Similarity=0.177  Sum_probs=167.6

Q ss_pred             cccccccCCCccch-hccccceeeeecccCCCCCcC---C--------CCcceEEcCCCcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQ-YLQKRRLQFKIGSRGSEPGCF---T--------WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~---~--------~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      .-.|..+.|+|+|. .+.+++...-+-.|+...+++   .        ......+++++++++..+..|.|.+    ...
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~l----Lha  332 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHL----LHA  332 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEe----ehh
Confidence            45688888999988 555555444444454443332   2        3455678999999999999999999    888


Q ss_pred             ccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC
Q psy13998         89 KTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN  164 (319)
Q Consensus        89 ~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~  164 (319)
                      .+++.+..+.   .+.+++|+.+++.+++.+..+.|++|| .....+.++...+..     .-..++.+.++.++++++.
T Consensus       333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~  407 (514)
T KOG2055|consen  333 KTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSD  407 (514)
T ss_pred             hhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccC
Confidence            7777766554   568899999998777777788999999 445666666543322     2366788889999999999


Q ss_pred             CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC--CCCeEEEEeC-CCCEEEEeCCCCCC
Q psy13998        165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS--NNHRVQIFDV-NGRVITSFGSEGSE  241 (319)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--~~~~i~~~~~-~~~~~~~~~~~~~~  241 (319)
                      .|-|.+||.+........+++..+      ......++.|.|+++..+++.++  ..+.+++... +......+...   
T Consensus       408 ~GiVNIYd~~s~~~s~~PkPik~~------dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~---  478 (514)
T KOG2055|consen  408 SGIVNIYDGNSCFASTNPKPIKTV------DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS---  478 (514)
T ss_pred             cceEEEeccchhhccCCCCchhhh------hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC---
Confidence            999999997754333333443333      22234567899999998876555  4567777774 43333444322   


Q ss_pred             cccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ......+++++|+|.|.+++.+...+++.+|..
T Consensus       479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            344567899999999999999999999999974

>KOG1036|consensus

Probab=99.73  E-value=4e-15  Score=109.84  Aligned_cols=235  Identities=15%  Similarity=0.155  Sum_probs=159.5

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      .+.+..|.|+|.+..++++++|+++++    |+........   +-....+.+|.++ ...++++-++.|+++|.++...
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrl----Ydv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRL----YDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEE----EeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc
Confidence            467789999998887777889999999    8776553333   2335577888764 4556677899999999776655


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      ..+      ..|...+.++...+....+++++.|++|++||.+..      .....+       .....+.++  +-.|+
T Consensus        88 ~~i------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~------~~~~~~-------d~~kkVy~~--~v~g~  146 (323)
T KOG1036|consen   88 DQI------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK------VVVGTF-------DQGKKVYCM--DVSGN  146 (323)
T ss_pred             eee------ccCCCceEEEEeeccCCeEEEcccCccEEEEecccc------cccccc-------ccCceEEEE--eccCC
Confidence            555      345567788988887788999999999999998842      111111       111123333  44567


Q ss_pred             EEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc-----eEEeeccc
Q psy13998        212 VIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ-----FLRAFGCW  285 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~-----~~~~~~~~  285 (319)
                      .++++..+..+.+||... ....+...    .......+++++-|++.=|++++-+|+|.+=..+..     ....+...
T Consensus       147 ~LvVg~~~r~v~iyDLRn~~~~~q~re----S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH  222 (323)
T KOG1036|consen  147 RLVVGTSDRKVLIYDLRNLDEPFQRRE----SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH  222 (323)
T ss_pred             EEEEeecCceEEEEEcccccchhhhcc----ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence            788888899999999643 21111110    222334688999998888899999999877543221     11122111


Q ss_pred             ---CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        286 ---GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       286 ---~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                         ........++++|+|+|--..+++++.||.|.+|
T Consensus       223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W  259 (323)
T KOG1036|consen  223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW  259 (323)
T ss_pred             ecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence               1112234568999999987799999999999998

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.73  E-value=3.9e-15  Score=114.49  Aligned_cols=196  Identities=28%  Similarity=0.341  Sum_probs=134.9

Q ss_pred             ceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEe-CCCeEEEEeCCCCEEEEEecCCce
Q psy13998        100 PRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus       100 ~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      +.++++++ ++.+|+++...++|+.|++.+.....+..        ..|.+++++ +++.+|++..  +.+.++|+.+..
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--------~~~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~   71 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--------PGPNGMAFDRPDGRLYVADS--GGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--------SSEEEEEEECTTSEEEEEET--TCEEEEETTTTE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--------CCCceEEEEccCCEEEEEEc--CceEEEecCCCc
Confidence            45788997 78999999999999999987776665532        227899999 7889999876  334555876532


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC--------CeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      ..    .+.....   .......|+.++++++|++|+++...        +.|++++.+++. ...      ...+..|+
T Consensus        72 ~~----~~~~~~~---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~~~------~~~~~~pN  137 (246)
T PF08450_consen   72 VT----VLADLPD---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-TVV------ADGLGFPN  137 (246)
T ss_dssp             EE----EEEEEET---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEE-EEE------EEEESSEE
T ss_pred             EE----EEeeccC---CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeE-EEE------ecCccccc
Confidence            21    1111100   01245678999999999999998653        679999988543 333      34567899


Q ss_pred             eEEEcCCCc-EEEEeCCCCEEEEEcCC--CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        250 GVAVDDQGY-ISVGDSGNNRIQIFTPD--GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       250 ~i~~~~~g~-~~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|+++|+++ +|++.+..++|..|+.+  +..+...............|.+++++++|++|++....+.|.+|
T Consensus       138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred             ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence            999999985 78899999999999953  43121110000002222459999999999999998888888764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0294|consensus

Probab=99.73  E-value=3.1e-15  Score=110.81  Aligned_cols=222  Identities=9%  Similarity=0.142  Sum_probs=162.4

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCc--EEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      ...|.+++++  ++++++++.+-++.+++...        .|-..++++.|.+.-.  .+++++.||.|.+    |+...
T Consensus        43 ~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i----w~~~~  116 (362)
T KOG0294|consen   43 AGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII----WRVGS  116 (362)
T ss_pred             ccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE----EEcCC
Confidence            5677888776  79999999998887776543        3557889999988664  7899999999999    87765


Q ss_pred             ceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         91 NCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        91 ~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      -..+.    +-..+++++++|.+++.++.++|+.++.|| ..|+.-......       ..+..+.|+|.|..|+... .
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~-~  188 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSG-R  188 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEe-c
Confidence            44443    334689999999999999999999999999 677654443211       3446699999998776654 3


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCccc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQ  244 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~  244 (319)
                      +.|.+|.++..      ++.....       ....+.++.+.. +..++++..+..|.+||.+ ......+      .+|
T Consensus       189 ~~i~i~q~d~A------~v~~~i~-------~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~------~AH  248 (362)
T KOG0294|consen  189 NKIDIYQLDNA------SVFREIE-------NPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEF------LAH  248 (362)
T ss_pred             cEEEEEecccH------hHhhhhh-------ccccceeeeecC-CceEEEecCCceEEEeccCCCccceee------ecc
Confidence            67888887642      2222111       112345555554 4566777778999999976 5555666      678


Q ss_pred             ccCcceEEE--cCCCcEEEEeCCCCEEEEEcCCC
Q psy13998        245 LKFPRGVAV--DDQGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       245 ~~~~~~i~~--~~~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      .+.+.++.+  .|++.++++.+.||.|.+||.+-
T Consensus       249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             hhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            888888874  46678999999999999999543

>KOG0267|consensus

Probab=99.71  E-value=1.4e-16  Score=129.93  Aligned_cols=240  Identities=11%  Similarity=0.208  Sum_probs=180.9

Q ss_pred             ceeeeecccC--CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEE
Q psy13998         40 RLQFKIGSRG--SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVV  113 (319)
Q Consensus        40 ~~~~~~~~~~--~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~  113 (319)
                      .....+..|+  ....|-..+.++.+-..++.+++++.+..+-+    |.......+.    +-..+.++.++....++.
T Consensus        11 ~~~t~Lr~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L----~~i~kp~~i~S~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   11 KRATKLRVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNL----WAIGKPNAITSLTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             eeeeccccccchhhhhhhhhhceeeeeccceeeccCCCceeecc----ccccCCchhheeeccCCcceeeecCcchhhhc
Confidence            3333444443  22344556677777567788999998888888    6653222222    334668899999888999


Q ss_pred             EcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC
Q psy13998        114 ADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG  192 (319)
Q Consensus       114 ~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  192 (319)
                      ++..++.|++|| ..++.++.+      .+|...+..+.|+|-+.+++.++.+.-+.+||.+-.      .+...+    
T Consensus        87 agsasgtiK~wDleeAk~vrtL------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~------Gc~~~~----  150 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVRTL------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK------GCSHTY----  150 (825)
T ss_pred             ccccCCceeeeehhhhhhhhhh------hccccCcceeeeccceEEeccccccccceehhhhcc------Cceeee----
Confidence            999999999999 667777766      678888899999999999988899999999998732      233333    


Q ss_pred             CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE
Q psy13998        193 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI  271 (319)
Q Consensus       193 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~  271 (319)
                        .++......+.+.|+|++.+.+..+..+.+|| +.|+....|      ..+...+..+.++|...++..++.+..|.+
T Consensus       151 --~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef------~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  151 --KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF------KSHEGKVQSLEFHPLEVLLAPGSSDRTVRF  222 (825)
T ss_pred             --cCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc------ccccccccccccCchhhhhccCCCCceeee
Confidence              23445567789999999999999899999999 578888888      556666778889998889999999999999


Q ss_pred             EcCC-CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        272 FTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       272 ~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ||.+ -+.+...      ......|.+++|++++..+.++.+.
T Consensus       223 ~dletfe~I~s~------~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  223 WDLETFEVISSG------KPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eccceeEEeecc------CCccCCceeeeecCCceeeecCchh
Confidence            9965 3444333      3446679999999999988887654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.69  E-value=7e-14  Score=102.24  Aligned_cols=236  Identities=15%  Similarity=0.117  Sum_probs=170.2

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      ..|..|+.++||.+|+++...+.|-.    .|..+++...    .-..|++|.+.|+|..|++++.. .|..++.+...+
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGh----LdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev  136 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGH----LDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV  136 (353)
T ss_pred             CCccccccCCCCceEEecCcccccee----cCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence            57889999999999999999999988    7887766544    23489999999999999999877 899999765556


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      .++..+..  ..........|++.|++|+++... .--..|..       ...+..+..     ..-..|++|+..|+|.
T Consensus       137 t~f~lp~~--~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-------~~~i~vfpa-----PqG~gpyGi~atpdGs  201 (353)
T COG4257         137 TRFPLPLE--HADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-------RNVISVFPA-----PQGGGPYGICATPDGS  201 (353)
T ss_pred             EEeecccc--cCCCcccceeeCCCccEEEeeccc-cceecCcc-------cCceeeecc-----CCCCCCcceEECCCCc
Confidence            66655432  223455778999999999998632 21122222       233343422     1335689999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCC
Q psy13998        212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE  291 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~  291 (319)
                      +|++....+.|-..|+-......+....   ........+-.+|-|+++++....+.++.||+..+.-.++..    .+.
T Consensus       202 vwyaslagnaiaridp~~~~aev~p~P~---~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypL----Pgs  274 (353)
T COG4257         202 VWYASLAGNAIARIDPFAGHAEVVPQPN---ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPL----PGS  274 (353)
T ss_pred             EEEEeccccceEEcccccCCcceecCCC---cccccccccccCccCcEEEeccCCceeeEeCcccccceeeeC----CCC
Confidence            9999888889999996322222332111   112234567778899999999999999999987666555543    344


Q ss_pred             CCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        292 FKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       292 ~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ...+.++.++..|+++.++...+.|.-
T Consensus       275 ~arpys~rVD~~grVW~sea~agai~r  301 (353)
T COG4257         275 KARPYSMRVDRHGRVWLSEADAGAIGR  301 (353)
T ss_pred             CCCcceeeeccCCcEEeeccccCceee
Confidence            456889999999999998888777654

>KOG1539|consensus

Probab=99.68  E-value=9.7e-14  Score=115.49  Aligned_cols=255  Identities=13%  Similarity=0.205  Sum_probs=168.6

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCc-EEEEcCCCCeEEEEcCCC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNS-IVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~  128 (319)
                      ....++++.-+|-=.+++.+..+|+|.+    +++..++.+..+.    .+..++|..||+ +++++...|.+.+||.++
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G~Vii----fNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~  276 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENGTVII----FNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK  276 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCceEEE----EEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence            3577888888888889999999999999    9999888887665    457899999996 666677779999999776


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecC---C-------------------------ceeee
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN---G-------------------------RVFQS  180 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~---~-------------------------~~~~~  180 (319)
                      +.+.....    ..|...+..+.+.+..-++++.+.|+.+++|-.+   |                         ..+..
T Consensus       277 kkl~~v~~----nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils  352 (910)
T KOG1539|consen  277 KKLINVTR----NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS  352 (910)
T ss_pred             Ceeeeeee----ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence            54433211    1233444445555544455555544444433221   0                         00000


Q ss_pred             c--------------------Cc-----------------------------------------------eeeeecccCC
Q psy13998        181 D--------------------GT-----------------------------------------------FVGKFGSMGN  193 (319)
Q Consensus       181 ~--------------------~~-----------------------------------------------~~~~~~~~~~  193 (319)
                      .                    ++                                               ....+.....
T Consensus       353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~  432 (910)
T KOG1539|consen  353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK  432 (910)
T ss_pred             cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence            0                    00                                               0000000000


Q ss_pred             -------cCC----CCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEE
Q psy13998        194 -------KAG----QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV  261 (319)
Q Consensus       194 -------~~~----~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v  261 (319)
                             .+.    ......++++++.|++.+.+...|.|-+|+.. |.....++..   +.+...+.+++.|..+++++
T Consensus       433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~---~ah~~~V~gla~D~~n~~~v  509 (910)
T KOG1539|consen  433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS---PAHKGEVTGLAVDGTNRLLV  509 (910)
T ss_pred             ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC---ccccCceeEEEecCCCceEE
Confidence                   000    11234678888999999999999999999975 5445555322   45666789999999999999


Q ss_pred             EeCCCCEEEEEcCCCce-EEeecc-----------------------------------cCCCCCCCCCcceEEEccCCc
Q psy13998        262 GDSGNNRIQIFTPDGQF-LRAFGC-----------------------------------WGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       262 ~~~~~~~i~~~~~~g~~-~~~~~~-----------------------------------~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      +++.+|-+..|+..++. +..+..                                   .....+|...+++++|+|||+
T Consensus       510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            99999999999955433 111100                                   001135778899999999999


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      .+++++.|++||+|
T Consensus       590 WlisasmD~tIr~w  603 (910)
T KOG1539|consen  590 WLISASMDSTIRTW  603 (910)
T ss_pred             EEEEeecCCcEEEE
Confidence            99999999999998

>KOG0650|consensus

Probab=99.67  E-value=3.2e-15  Score=119.82  Aligned_cols=239  Identities=13%  Similarity=0.163  Sum_probs=167.4

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCc--EEEEcCCCCeEEEEc
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS--IVVADSSNHRVQVFQ  125 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~--~~~~~~~~~~i~~~~  125 (319)
                      ..||.+.+.+|.+++.|..+++++.||+|++    |.+.|+.++.+..   .+.+++|+|.++  +++++.... +.+.+
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvri----WEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn  470 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRI----WEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN  470 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEE----EEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence            3578899999999999999999999999999    9999998888654   678999999765  444443333 55544


Q ss_pred             -CCCcEEE----------------------EecCC----C-----ccCCCCCCceeEEEeCCCeEEEEeC---CCCEEEE
Q psy13998        126 -SDGTFVG----------------------KFGSM----G-----NKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQI  170 (319)
Q Consensus       126 -~~~~~~~----------------------~~~~~----~-----~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~i~~  170 (319)
                       .-|..+.                      .+...    .     ....+...+..+.++..|.++++..   ....|.+
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence             2221000                      00000    0     0012335567888999998888754   3467888


Q ss_pred             EecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcc
Q psy13998        171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +++..+.      ....|      ......+..+.|+|....+++++ ...|++||. .+..++.+      .....++.
T Consensus       551 HQLSK~~------sQ~PF------~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL------~tg~kwiS  611 (733)
T KOG0650|consen  551 HQLSKRK------SQSPF------RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKL------LTGSKWIS  611 (733)
T ss_pred             Eeccccc------ccCch------hhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHH------hcCCeeee
Confidence            8776321      11111      11234577889998775555444 457999996 44444444      34456788


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEcC--CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFTP--DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++++|.|.-++.++.++++..||.  ..+..+.+      ..|...++++++++.-.++++++.|+.+.||
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l------r~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL------RLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh------hhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            9999999987888899999999995  45566666      5677889999999988899999999999886

>KOG4283|consensus

Probab=99.67  E-value=3.8e-14  Score=104.33  Aligned_cols=280  Identities=15%  Similarity=0.223  Sum_probs=180.3

Q ss_pred             ccccccCCCc-cchhccccceeeeecccCC-----------------------CCCcCCCCcceEEcC-CCcEEEEeCCC
Q psy13998         22 SGIGQVGTTP-RSQYLQKRRLQFKIGSRGS-----------------------EPGCFTWPRGIAVGP-DNSIVVADSSN   76 (319)
Q Consensus        22 ~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~~v~~~~-~g~~~~~~~~~   76 (319)
                      .+|..+...+ .++|+.++..+..+..|+.                       ..+|...+..+.|-| |.-+|.+++.|
T Consensus        44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD  123 (397)
T KOG4283|consen   44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD  123 (397)
T ss_pred             CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence            3455555433 4667777665555444322                       234556677777777 55589999999


Q ss_pred             CeEEEeccccccccceeeEEecCc---eeeEEcCC---CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCcee
Q psy13998         77 HRVQVCFPHFDLKTNCVFLAFTWP---RGIAVGPD---NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHY  149 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~---g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  149 (319)
                      +++++    ||..+.+....+..+   ..-+++|-   ..+++++..+-.|++.| ..|.....+      .+|...+.+
T Consensus       124 htlKV----WDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L------sGHr~~vla  193 (397)
T KOG4283|consen  124 HTLKV----WDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL------SGHRDGVLA  193 (397)
T ss_pred             ceEEE----eecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee------ccccCceEE
Confidence            99999    999887777665533   33344442   35788888899999999 788887777      688889999


Q ss_pred             EEEeCCC-eEEEEeCCCCEEEEEecCCce---eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEE
Q psy13998        150 IAVSNTN-RVIVSDSNNHRVQIFDVNGRV---FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF  225 (319)
Q Consensus       150 l~~~~~g-~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~  225 (319)
                      +.|+|.. -++++++.|+.|++||++...   ...+..--...+.......+....+++++..++..+++...+.++++|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            9999955 567788999999999987320   000000000001111124455667899999999888888889999999


Q ss_pred             eC-CCCE-EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        226 DV-NGRV-ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       226 ~~-~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      +. +|.. .+.++....... ......+. +.+...++---.++.+.+++ .+|..++.+      ..|...+.+.++.|
T Consensus       274 n~~~G~ntl~~~g~~~~n~~-~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l------~~h~k~i~c~~~~~  345 (397)
T KOG4283|consen  274 NMESGRNTLREFGPIIHNQT-TSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL------STHLKRINCAAYRP  345 (397)
T ss_pred             ecccCccccccccccccccc-ccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee------ecccceeeEEeecC
Confidence            95 4432 233321111000 00001111 22223444444558888888 578888887      67777888888888


Q ss_pred             CCcEEEEeCCCCeEEeC
Q psy13998        303 NGNILVCDRENHRIQVF  319 (319)
Q Consensus       303 ~g~~~v~~~~~~~i~v~  319 (319)
                      +=.-..++..|+.|..|
T Consensus       346 ~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  346 DFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             chhhhhccccCCccccc
Confidence            76666777778777665

>KOG2919|consensus

Probab=99.67  E-value=1.4e-14  Score=107.81  Aligned_cols=266  Identities=14%  Similarity=0.192  Sum_probs=171.1

Q ss_pred             ccccccCCCccchhccccceeeeecccCCC--------CCcC--------CC-----CcceEE-------cCCCcEEEEe
Q psy13998         22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCF--------TW-----PRGIAV-------GPDNSIVVAD   73 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~--------~~-----~~~v~~-------~~~g~~~~~~   73 (319)
                      .....+-|||+|.-+.+.+.+..+..|...        ++..        ..     +..-++       .|+..+|++.
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            445677799999887776666554444221        1110        11     111122       3666789999


Q ss_pred             CCCCeEEEeccccccccceeeE---------EecCceeeEEcCCCcEEEEcCCCCeEEEEc--CCCcEEEEecCCC-ccC
Q psy13998         74 SSNHRVQVCFPHFDLKTNCVFL---------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ--SDGTFVGKFGSMG-NKA  141 (319)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~-~~~  141 (319)
                      +.+.-|.+    ||.-+++...         ++....++.|+|||..++++. +..|++||  ..|.....+.+.. ...
T Consensus       130 sr~~PIh~----wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  130 SRDQPIHL----WDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             cccCceee----eeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence            99999999    8876655433         334668999999999888764 66899999  3454333322211 123


Q ss_pred             CCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe-CCC
Q psy13998        142 GQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD-SNN  219 (319)
Q Consensus       142 ~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~  219 (319)
                      +...-+.+++++| +.+.+..++...++-+|.-.++      .++...      .++...++.+.+.++|+.++++ ..+
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~ll------ggh~gGvThL~~~edGn~lfsGaRk~  272 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLL------GGHGGGVTHLQWCEDGNKLFSGARKD  272 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCC------Cceeee------cccCCCeeeEEeccCcCeecccccCC
Confidence            3445667889999 5568888888888888876643      333333      3455677889999999655554 467


Q ss_pred             CeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--CceEEeecccCCCCCCCCCc
Q psy13998        220 HRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQFLRAFGCWGSGDGEFKGL  295 (319)
Q Consensus       220 ~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~~~  295 (319)
                      ..|..||+.  ...+..+...   .+..+.-.-..++|+|+++++++.+|.|++||.+  |..+..+      ..+...+
T Consensus       273 dkIl~WDiR~~~~pv~~L~rh---v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~------~~~sd~v  343 (406)
T KOG2919|consen  273 DKILCWDIRYSRDPVYALERH---VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT------GNYSDTV  343 (406)
T ss_pred             CeEEEEeehhccchhhhhhhh---ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc------ccccccc
Confidence            899999964  2333333111   0111112234556889999999999999999954  4544444      3456678


Q ss_pred             ceEEEccCCcEEEEeCCC
Q psy13998        296 EGVAVMSNGNILVCDREN  313 (319)
Q Consensus       296 ~~l~~~~~g~~~v~~~~~  313 (319)
                      ++++++|--.++++.+..
T Consensus       344 NgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  344 NGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cceecCcccceeeeccCc
Confidence            889998876677776654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.67  E-value=3.4e-13  Score=108.63  Aligned_cols=202  Identities=25%  Similarity=0.380  Sum_probs=132.4

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEE------------------ecCceeeEEcCCCc-EEEEc
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLA------------------FTWPRGIAVGPDNS-IVVAD  115 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~~~g~-~~~~~  115 (319)
                      ..|..++++++++ ++++...++.|.+    +++...+.+..                  ..+|+++.++|+|+ +|+++
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v----~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d  162 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSV----FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD  162 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEE----EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEE----EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence            5678899999998 5666678999999    77765433331                  13678999999986 77778


Q ss_pred             CCCCeEEEEcCCC---cEEE--EecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCc--eeee
Q psy13998        116 SSNHRVQVFQSDG---TFVG--KFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGT--FVGK  187 (319)
Q Consensus       116 ~~~~~i~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~  187 (319)
                      ....+|.+|+.+.   ++..  .+.     ...-..|..++|+|++ .+|++...++.|.+|+....    .+.  .+..
T Consensus       163 lG~D~v~~~~~~~~~~~l~~~~~~~-----~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~----~g~~~~~~~  233 (345)
T PF10282_consen  163 LGADRVYVYDIDDDTGKLTPVDSIK-----VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS----DGSLTEIQT  233 (345)
T ss_dssp             TTTTEEEEEEE-TTS-TEEEEEEEE-----CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT----TTEEEEEEE
T ss_pred             cCCCEEEEEEEeCCCceEEEeeccc-----cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc----CCceeEEEE
Confidence            8888999998332   2322  221     1233678999999987 46788888899999987621    111  1222


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC---CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEE
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVG  262 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~  262 (319)
                      .............+..|+++|+|+ +|++....+.|.+|+.+   |.+ ..+...   ......|++++++|+|+ +|++
T Consensus       234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~---~~~G~~Pr~~~~s~~g~~l~Va  309 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTV---PTGGKFPRHFAFSPDGRYLYVA  309 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEE---EESSSSEEEEEE-TTSSEEEEE
T ss_pred             eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEE---eCCCCCccEEEEeCCCCEEEEE
Confidence            211111122223688999999995 67888889999999963   333 222111   22234699999999997 6667


Q ss_pred             eCCCCEEEEEcC
Q psy13998        263 DSGNNRIQIFTP  274 (319)
Q Consensus       263 ~~~~~~i~~~~~  274 (319)
                      +..++.|.+|+.
T Consensus       310 ~~~s~~v~vf~~  321 (345)
T PF10282_consen  310 NQDSNTVSVFDI  321 (345)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ecCCCeEEEEEE
Confidence            778899999973

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0321|consensus

Probab=99.66  E-value=1.2e-14  Score=117.27  Aligned_cols=254  Identities=8%  Similarity=0.136  Sum_probs=158.6

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCC-cEEEEcCCCCeEEEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDN-SIVVADSSNHRVQVF  124 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~  124 (319)
                      ..|.+.+..+.+.|....+|++++|.+++.    |+..+.+...      |...+.+++|.+.+ .+|++++.|+.|.+|
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~----Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRP----WDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeee----eeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            457788999999995558999999999999    9987655443      44567888999876 589999999999999


Q ss_pred             cC--CCcE-EEE--------ecC---CCc--------cCCCCCCcee---EEEeCCCeEEEEeCC-CCEEEEEecCCcee
Q psy13998        125 QS--DGTF-VGK--------FGS---MGN--------KAGQLEHPHY---IAVSNTNRVIVSDSN-NHRVQIFDVNGRVF  178 (319)
Q Consensus       125 ~~--~~~~-~~~--------~~~---~~~--------~~~~~~~~~~---l~~~~~g~~~~~~~~-~~~i~~~~~~~~~~  178 (319)
                      |.  ++.- ...        ...   +..        ...+...+.+   +.+..|...+++++. |+.|++||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            93  3310 000        000   000        0111111222   344456677777765 99999999985422


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCc--ceEEEcCC
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFP--RGVAVDDQ  256 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~  256 (319)
                      ...++......... .........++..|..|.++++.+.|+.|+.|++.+..+.-....   .++...-  ..-..+|+
T Consensus       253 ~~r~ep~~~~~~~t-~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~---sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPT-HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF---SGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccCCCcccCccC-cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc---cCcccceeeeeeecCCC
Confidence            21111111111000 011123456788888887777777799999999754322111000   1221111  22346799


Q ss_pred             CcEEEEeCCCCEEEEEcCCCc--eEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        257 GYISVGDSGNNRIQIFTPDGQ--FLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +.++++++.+...++|..+.-  ....+      .+|...++.++|.|.-. =+++++.|.++++|
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW  388 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALL------LGHTREVTTVRWLPSATTPVATCSDDFRVKIW  388 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhh------hCcceEEEEEeeccccCCCceeeccCcceEEE
Confidence            999999999999999985421  12222      46777889999976432 45556999999998

>KOG0300|consensus

Probab=99.66  E-value=3e-14  Score=105.96  Aligned_cols=245  Identities=13%  Similarity=0.184  Sum_probs=174.4

Q ss_pred             ecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCe
Q psy13998         45 IGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        45 ~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      +.......||.+.++.++......++.+++.|.+.++    |.++++.++..    ...+++++|++.+.+++++++|++
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~i----Ws~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARI----WSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeE----EeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence            3444556789999999999887779999999999999    99998887764    447899999999999999999998


Q ss_pred             EEEEc-------CC--------CcE-EEEec-----CCC--------------ccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998        121 VQVFQ-------SD--------GTF-VGKFG-----SMG--------------NKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus       121 i~~~~-------~~--------~~~-~~~~~-----~~~--------------~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      ..+|.       +.        ++. ...-.     ..+              ...+|...+.+..|...|+..++++.|
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            88874       11        000 00000     000              001233333344445567889999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEG  243 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~  243 (319)
                      .+-.+||.++.      .++..+      .+|....+..+.+|..+++++.+.+-..++||..  -..+..|      .+
T Consensus       294 RTAnlwDVEtg------e~v~~L------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF------QG  355 (481)
T KOG0300|consen  294 RTANLWDVETG------EVVNIL------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF------QG  355 (481)
T ss_pred             ccceeeeeccC------ceeccc------cCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee------cc
Confidence            99999998843      444333      3344444556667888999999999999999954  2445556      77


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC--ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG--QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |...++++.|..+ .-+|+++.|.+|.+||...  ..+.++       .....++.++++..+.+++.-..++.||+|
T Consensus       356 HtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATI-------RtdS~~NRvavs~g~~iIAiPhDNRqvRlf  425 (481)
T KOG0300|consen  356 HTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATI-------RTDSPANRVAVSKGHPIIAIPHDNRQVRLF  425 (481)
T ss_pred             cccceeEEEEecC-CceeecCCCceEEEeeeccccCcceee-------ecCCccceeEeecCCceEEeccCCceEEEE
Confidence            8888899999876 4568999999999999532  344454       233467788888777788888888888876

>KOG4328|consensus

Probab=99.66  E-value=1.4e-14  Score=112.47  Aligned_cols=275  Identities=13%  Similarity=0.163  Sum_probs=176.0

Q ss_pred             cccccccCCCccch--hccccceeeeecccCCC------------CCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccc
Q psy13998         21 VSGIGQVGTTPRSQ--YLQKRRLQFKIGSRGSE------------PGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPH   85 (319)
Q Consensus        21 ~~~i~~~~~~~~~~--~l~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~   85 (319)
                      ...|.+++|+|.-.  +++.+.....++.|+-.            ..|-..|.+|.|+|.. ..+++.+.||+|+.    
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~----  261 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL----  261 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee----
Confidence            45789999999665  56666666777777541            1233568899999955 47788899999999    


Q ss_pred             cccccc--eeeEEe----cCceeeEEcCCCc-EEEEcCCCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeCC-
Q psy13998         86 FDLKTN--CVFLAF----TWPRGIAVGPDNS-IVVADSSNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-  155 (319)
Q Consensus        86 ~~~~~~--~~~~~~----~~~~~l~~~~~g~-~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  155 (319)
                      -|.++.  +.+...    ....++.++.+.. +++.+. -+...+||  .++.....+      ..|...+.+++++|- 
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-~G~f~~iD~R~~~s~~~~~------~lh~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-VGNFNVIDLRTDGSEYENL------RLHKKKITSVALNPVC  334 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-ccceEEEEeecCCccchhh------hhhhcccceeecCCCC
Confidence            666432  112222    1234555665544 444443 34788888  344434333      334457899999994 


Q ss_pred             CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC---C--C
Q psy13998        156 NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN---G--R  230 (319)
Q Consensus       156 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~---~--~  230 (319)
                      ..++++++.|++..+||++...-... .++.       ...|...+.+..|+|.+--+++.+.++.|++||..   .  .
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~s-p~ls-------t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~  406 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKAS-PFLS-------TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE  406 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCC-ccee-------cccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence            46788899999999999874211110 0111       13455667888999987558888889999999963   1  1


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce-EEeecccCCCCCCCCCcceEEEccCCc-EEE
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF-LRAFGCWGSGDGEFKGLEGVAVMSNGN-ILV  308 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v  308 (319)
                      ....+.. ....+..-.|...+|+|+..+++.+.....|-+||.+|+. +..+..    +....-+.-..++|-+. +++
T Consensus       407 p~~~I~H-n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~----P~~~tI~~vn~~HP~~~~~~a  481 (498)
T KOG4328|consen  407 PLGTIPH-NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD----PESSTIPSVNEFHPMRDTLAA  481 (498)
T ss_pred             ccceeec-cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC----ccccccccceeecccccceec
Confidence            2222211 1112233346678899999999999988999999976654 555421    11112344467888777 566


Q ss_pred             EeCCCCeEEeC
Q psy13998        309 CDRENHRIQVF  319 (319)
Q Consensus       309 ~~~~~~~i~v~  319 (319)
                      .+...|.|.||
T Consensus       482 G~~s~Gki~vf  492 (498)
T KOG4328|consen  482 GGNSSGKIYVF  492 (498)
T ss_pred             cCCccceEEEE
Confidence            66667778776

>KOG0269|consensus

Probab=99.65  E-value=6.9e-15  Score=121.16  Aligned_cols=231  Identities=12%  Similarity=0.113  Sum_probs=161.9

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc---ceeeE----EecCceeeEEcCCC-cEEEEcCCCCeEEEEc
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT---NCVFL----AFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ  125 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~  125 (319)
                      +.....|.+.. ..+++++++.+|.|.+    ||+..   +..+.    |-..++.+.|++-. .++++++.|+.|+.||
T Consensus        87 ~~S~~DVkW~~~~~NlIAT~s~nG~i~v----Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen   87 FYSAADVKWGQLYSNLIATCSTNGVISV----WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             eeehhhcccccchhhhheeecCCCcEEE----EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence            44556666664 4568899999999999    88854   11211    44577899998764 7999999999999999


Q ss_pred             -CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        126 -SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                       ...+....+      .+..+.+.++.|+| .++.|++....|.+.+||++..     .+....+      .+|.....+
T Consensus       163 lR~~~S~~t~------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~------~AH~GpV~c  225 (839)
T KOG0269|consen  163 LRSKKSKSTF------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP-----DRCEKKL------TAHNGPVLC  225 (839)
T ss_pred             eecccccccc------cccchhhhceeeccCCCceEEEecCCceEEEeeccCc-----hhHHHHh------hcccCceEE
Confidence             333333333      33446778999998 6788999999999999999731     1222222      456677789


Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC--CCCEEEEEcCCCc--e
Q psy13998        204 IAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS--GNNRIQIFTPDGQ--F  278 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~--~~~~i~~~~~~g~--~  278 (319)
                      +.++|++.++++++.|+.|++|+.++........    ......+..++|-|+.. .+++++  .+..|++||..-.  +
T Consensus       226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             EeecCCCceeeecCCCccEEEEeccCCCccceeE----EeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            9999998999999999999999976432211100    12234567789998864 444444  4779999995432  2


Q ss_pred             EEeecccCCCCCCCCCcceEEEccC-CcEEEEeCCCCeE
Q psy13998        279 LRAFGCWGSGDGEFKGLEGVAVMSN-GNILVCDRENHRI  316 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~v~~~~~~~i  316 (319)
                      ...+      ..|...+++++|... -.++.+.+.|+.|
T Consensus       302 ~~t~------~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  302 YATF------LEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             ceee------eccCccccceeccCCCceeeEeecCccHH
Confidence            3444      567778899999763 3478888888765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=2.6e-12  Score=97.63  Aligned_cols=250  Identities=18%  Similarity=0.296  Sum_probs=154.6

Q ss_pred             cCCCCcceEEcCCCc-EEEEeCC--CCeEEEeccccccccc-eeeEEe-------cCceeeEEcCCCcE-EEEcCCCCeE
Q psy13998         54 CFTWPRGIAVGPDNS-IVVADSS--NHRVQVCFPHFDLKTN-CVFLAF-------TWPRGIAVGPDNSI-VVADSSNHRV  121 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~-~~~~~~~--~~~v~~~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~g~~-~~~~~~~~~i  121 (319)
                      +...|+-|+++++++ +|+....  .+.|..    |..+.. +.+..+       ..|..++++++|++ +.+....+.|
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaa----y~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v  113 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAA----YRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV  113 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEE----EEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence            468899999999997 4554444  577777    555432 333322       25588999999975 5555566788


Q ss_pred             EEEc--CCCcEEE---EecCCCcc--CC-CCCCceeEEEeCCCeEEE-EeCCCCEEEEEecCCceeeecCceeeeecccC
Q psy13998        122 QVFQ--SDGTFVG---KFGSMGNK--AG-QLEHPHYIAVSNTNRVIV-SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG  192 (319)
Q Consensus       122 ~~~~--~~~~~~~---~~~~~~~~--~~-~~~~~~~l~~~~~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  192 (319)
                      .++-  .+|.+..   .+...+..  +. ....++...++|++++++ ++-...+|.+|+++...+.+.....       
T Consensus       114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-------  186 (346)
T COG2706         114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-------  186 (346)
T ss_pred             EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-------
Confidence            8886  4454332   22222211  11 112367888999996554 5567788999988733222111110       


Q ss_pred             CcCCCCCCceeEEEcCCCcE-EEEeCCCCeEEEEeCCC--CEEEEeCCC---CCCcccccCcceEEEcCCCc-EEEEeCC
Q psy13998        193 NKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNG--RVITSFGSE---GSEEGQLKFPRGVAVDDQGY-ISVGDSG  265 (319)
Q Consensus       193 ~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~i~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~-~~v~~~~  265 (319)
                        ...-..|..|+|+|++++ |+...-+++|.+|..+.  ..+..+...   ...-....+...|.++++|+ +|++...
T Consensus       187 --v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg  264 (346)
T COG2706         187 --VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG  264 (346)
T ss_pred             --cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence              122356888999999975 56666788999887543  333333221   11122234556789999997 6777777


Q ss_pred             CCEEEEEc--CCCceEEeecccCCCCCCCCCcceEEEccCCcEE-EEeCCCCeEEeC
Q psy13998        266 NNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL-VCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-v~~~~~~~i~v~  319 (319)
                      .+.|.+|.  +++..+...+..   ..+...|++..+++.|+++ ++.-.+..|.+|
T Consensus       265 ~dsI~~f~V~~~~g~L~~~~~~---~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         265 HDSIAVFSVDPDGGKLELVGIT---PTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCeEEEEEEcCCCCEEEEEEEe---ccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            78888887  555555444322   3445569999999999955 444455556664

>KOG2919|consensus

Probab=99.65  E-value=4.5e-14  Score=105.20  Aligned_cols=246  Identities=14%  Similarity=0.224  Sum_probs=160.1

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce---eeE-------EecC---ceeeEE-------cCCCcEEEE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC---VFL-------AFTW---PRGIAV-------GPDNSIVVA  114 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-------~~~~---~~~l~~-------~~~g~~~~~  114 (319)
                      .+.-.+..|+|||.-+++.+.+..+.+|+.-++.-..+   ...       +...   +..-++       .|+.++|++
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            45667899999999999999999999943222221111   100       1111   111122       356679999


Q ss_pred             cCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC-
Q psy13998        115 DSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-  192 (319)
Q Consensus       115 ~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-  192 (319)
                      .+.+.-|.+|| .+|+....+..... ........+++|+|||..++++ ....|++||...     .|..-..+.... 
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh-~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~R-----pGr~c~vy~t~~~  201 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDH-QDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSR-----PGRDCPVYTTVTK  201 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhh-HHhhhhheeEEecCCCCeEeec-ccceEEEeeccC-----CCCCCcchhhhhc
Confidence            99999999999 78877665532211 1223456889999999988876 567899999731     112111111100 


Q ss_pred             CcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEE-eCCCCEE
Q psy13998        193 NKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVG-DSGNNRI  269 (319)
Q Consensus       193 ~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~-~~~~~~i  269 (319)
                      ...+...-..+++++|.. ..+..++...++-+|.-. +..+..+      .++...++.+++.++|+-+++ +..+..|
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll------ggh~gGvThL~~~edGn~lfsGaRk~dkI  275 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL------GGHGGGVTHLQWCEDGNKLFSGARKDDKI  275 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee------cccCCCeeeEEeccCcCeecccccCCCeE
Confidence            013334556789999865 588888888888888754 4555555      466778999999999975444 4568899


Q ss_pred             EEEcC--CCceEEeecccCCCCCCCC-CcceEE--EccCCcEEEEeCCCCeEEeC
Q psy13998        270 QIFTP--DGQFLRAFGCWGSGDGEFK-GLEGVA--VMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       270 ~~~~~--~g~~~~~~~~~~~~~~~~~-~~~~l~--~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..||.  ....+..+.      .|.. .-..|-  ++|+|+++++++.+|.|++|
T Consensus       276 l~WDiR~~~~pv~~L~------rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vw  324 (406)
T KOG2919|consen  276 LCWDIRYSRDPVYALE------RHVGDTNQRILFDLDPKGEILASGDTDGSVRVW  324 (406)
T ss_pred             EEEeehhccchhhhhh------hhccCccceEEEecCCCCceeeccCCCccEEEE
Confidence            99994  344444442      1211 122333  46889999999999999998

>KOG1063|consensus

Probab=99.65  E-value=1e-13  Score=113.07  Aligned_cols=247  Identities=13%  Similarity=0.243  Sum_probs=168.7

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-eeeE---Ee-------cCceeeEEcCCCcEEEEcCCCCe
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-CVFL---AF-------TWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---~~-------~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      .||-++|+++.+.|.+..+++++.|.++.+    |...+. +.+.   .+       ..-.+.-|+++++.+++.+..|.
T Consensus       264 ~GHeDWV~sv~W~p~~~~LLSASaDksmii----W~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGLDLLSASADKSMII----WKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             cCcccceEEEEEccchhhheecccCcceEE----EecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence            378899999999999988999999999999    555433 2222   11       12467789999999999999999


Q ss_pred             EEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        121 VQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       121 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      .++|. .+...-..   .....+|...+.+++++|.|.++++.+.|.+-++|-.-|+...        +.....+.-|-.
T Consensus       340 ~hlWkt~d~~~w~~---~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~--------wHEiaRPQiHGy  408 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQ---EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE--------WHEIARPQIHGY  408 (764)
T ss_pred             EEEEeccCccceee---ccccccccccceeeeecCCCCEEEEeccccceeeecccccccc--------eeeecccccccc
Confidence            99998 33222111   1122688899999999999999999999999888876643211        111111122333


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeCC-----------C------------CEEEEeCC-----------CC------
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVN-----------G------------RVITSFGS-----------EG------  239 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-----------~------------~~~~~~~~-----------~~------  239 (319)
                      ...++++-+....|+++.....+++|+..           +            ..+..++.           .+      
T Consensus       409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~  488 (764)
T KOG1063|consen  409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC  488 (764)
T ss_pred             cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence            44566666545667777777777777632           1            00000000           00      


Q ss_pred             -------------------------------CCcccccCcceEEEcCCCcEEEEeCC-----CCEEEEEcCCC-ceEEee
Q psy13998        240 -------------------------------SEEGQLKFPRGVAVDDQGYISVGDSG-----NNRIQIFTPDG-QFLRAF  282 (319)
Q Consensus       240 -------------------------------~~~~~~~~~~~i~~~~~g~~~v~~~~-----~~~i~~~~~~g-~~~~~~  282 (319)
                                                     ...+|...+.+++++|+|++++++..     ...|++|+... ..++.+
T Consensus       489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L  568 (764)
T KOG1063|consen  489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL  568 (764)
T ss_pred             eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence                                           01134455688999999999998864     34689999543 333445


Q ss_pred             cccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                            ..|.-.++.|+|+|||+++++.+.|+.+.+|
T Consensus       569 ------~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  569 ------EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             ------cccceEEEEEEECCCCcEEEEeecCceEEee
Confidence                  6788889999999999999999999999887

>KOG0650|consensus

Probab=99.64  E-value=9e-15  Score=117.29  Aligned_cols=267  Identities=13%  Similarity=0.168  Sum_probs=181.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCcC-------CCCcceEEcCCCc--EEEEeCCCCeEEEeccccc----
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------TWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFD----   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~----   87 (319)
                      .+.+.+++..|.+.+|++++.+.++.+|....|..       ..+.+|+|+|.++  +++++... .+.+.+|-+-    
T Consensus       400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e  478 (733)
T KOG0650|consen  400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLE  478 (733)
T ss_pred             CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhh
Confidence            67889999999999999999999999997776642       5789999999876  34444333 3545333221    


Q ss_pred             -------------------------ccc---c-----eeeEEecCceeeEEcCCCcEEEEcC---CCCeEEEEcCCCcEE
Q psy13998         88 -------------------------LKT---N-----CVFLAFTWPRGIAVGPDNSIVVADS---SNHRVQVFQSDGTFV  131 (319)
Q Consensus        88 -------------------------~~~---~-----~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~~~~  131 (319)
                                               ...   .     -.+.+...+..|.|+..|.++++..   .+..|.+.+......
T Consensus       479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s  558 (733)
T KOG0650|consen  479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS  558 (733)
T ss_pred             hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence                                     100   0     0111334567788988898776643   345777777433222


Q ss_pred             E-EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        132 G-KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       132 ~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      + -+      ......|..+.|+|..-.++.++ ...|++||+..+      .++..+      ......+.+|+++|.|
T Consensus       559 Q~PF------~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq------elvKkL------~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  559 QSPF------RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ------ELVKKL------LTGSKWISSMSIHPNG  619 (733)
T ss_pred             cCch------hhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH------HHHHHH------hcCCeeeeeeeecCCC
Confidence            1 12      11235678999999765444443 367999998743      222222      2233467789999999


Q ss_pred             cEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC---C----Cce---
Q psy13998        211 RVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP---D----GQF---  278 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~---~----g~~---  278 (319)
                      .-++.++.++++..||.+  .+..+.+      .-|....+.+++++.-.++++++.|+.+.+|--   +    ...   
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~l------r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTL------RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHh------hhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            888888999999999964  3455554      445667889999998889999999999998861   1    111   


Q ss_pred             EEeecccCCCCCCCC----CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        279 LRAFGCWGSGDGEFK----GLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++.+      .+|..    .+.+..|+|..-.+++++.|+.|++|
T Consensus       694 lK~L------~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  694 LKRL------RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeec------cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            2233      33333    37777899998899999999999998

>KOG0270|consensus

Probab=99.63  E-value=1.4e-13  Score=106.52  Aligned_cols=233  Identities=14%  Similarity=0.161  Sum_probs=159.5

Q ss_pred             CCCcceEEc-------CCCcEEEEeCCCCeEEEeccccccccceeeE-------------------------EecCceee
Q psy13998         56 TWPRGIAVG-------PDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-------------------------AFTWPRGI  103 (319)
Q Consensus        56 ~~~~~v~~~-------~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------------~~~~~~~l  103 (319)
                      ..|.++++-       ..|++++.+.-+..|.+    ||+.-...+.                         |...+..+
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI----WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L  249 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI----WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL  249 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEE----eccccccccccceeechhhhhhhhhhcccccccccchHHHHHH
Confidence            345565552       23578999999999999    5543111110                         11122355


Q ss_pred             EEcCC-CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeee
Q psy13998        104 AVGPD-NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQS  180 (319)
Q Consensus       104 ~~~~~-g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~  180 (319)
                      +++.. .+++++++.|.+|++|| ..|++...+      ..|...++++.|++ ...++++++.++++.++|.+.  ...
T Consensus       250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~--~~~  321 (463)
T KOG0270|consen  250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD--PSN  321 (463)
T ss_pred             HhccccceeEEecCCCceEEEEEcCCCCcceeh------hhcCCceeEEEecCCCceEEEeccccceEEeeeccC--ccc
Confidence            66554 36899999999999999 677777776      34557889999999 568899999999999999873  111


Q ss_pred             cCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998        181 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g  257 (319)
                      .+.. ..+         ...+-.+++++.. ..++++..+|.++-+|.  .++.+.++      ..|-..+.+|++++.-
T Consensus       322 s~~~-wk~---------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~------~AHd~~ISgl~~n~~~  385 (463)
T KOG0270|consen  322 SGKE-WKF---------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL------KAHDDEISGLSVNIQT  385 (463)
T ss_pred             cCce-EEe---------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE------EeccCCcceEEecCCC
Confidence            1111 111         1234458888765 56788889999999995  46778777      6777789999998763


Q ss_pred             -cEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        258 -YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       258 -~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                       .++++++.++.|.+|+..+..-+.....   .-......+.++.|+-. +|+.++..+.++||
T Consensus       386 p~~l~t~s~d~~Vklw~~~~~~~~~v~~~---~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw  446 (463)
T KOG0270|consen  386 PGLLSTASTDKVVKLWKFDVDSPKSVKEH---SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW  446 (463)
T ss_pred             CcceeeccccceEEEEeecCCCCcccccc---cccccceeecccCCCcceEEEecCccceEEEe
Confidence             6899999999999999543221111100   12233466777788765 77888888888887

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=3.5e-12  Score=96.90  Aligned_cols=240  Identities=16%  Similarity=0.223  Sum_probs=147.5

Q ss_pred             cccccccCCCccchhcccccee---e---eec---------ccCCCCCcCCCCcceEEcCCCcEE-EEeCCCCeEEEecc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQ---F---KIG---------SRGSEPGCFTWPRGIAVGPDNSIV-VADSSNHRVQVCFP   84 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~---~---~~~---------~~~~~~~~~~~~~~v~~~~~g~~~-~~~~~~~~v~~~~~   84 (319)
                      ....+.++++|+.+.|-+....   .   .+.         .-+.....-..|..|+++++|+++ ++....+.|.+   
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v---  115 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV---  115 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE---
Confidence            4567888888888766554333   0   111         111122222566899999999854 55556788888   


Q ss_pred             ccccccceeeE-------Ee----------cCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCC
Q psy13998         85 HFDLKTNCVFL-------AF----------TWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLE  145 (319)
Q Consensus        85 ~~~~~~~~~~~-------~~----------~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~  145 (319)
                       +.+...+.+.       +.          ++++...++|+++ +++.+-+..+|.+|+ .+|+....-...   ...-.
T Consensus       116 -~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~---v~~G~  191 (346)
T COG2706         116 -YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE---VKPGA  191 (346)
T ss_pred             -EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc---cCCCC
Confidence             6665444332       11          2367888999997 455566667899999 555543322111   12235


Q ss_pred             CceeEEEeCCCeE-EEEeCCCCEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE-EEEeCCCCe
Q psy13998        146 HPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHR  221 (319)
Q Consensus       146 ~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~  221 (319)
                      .|..|+|+|++++ |+...-+++|.+|..+..  .+    +.+..................|.++++|++ |++....+.
T Consensus       192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~----~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds  267 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF----EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS  267 (346)
T ss_pred             CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE----EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence            7899999999976 666777899999987752  11    112222211111223344567889999975 566666677


Q ss_pred             EEEEe--CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-CCCEEEEEcC
Q psy13998        222 VQIFD--VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-GNNRIQIFTP  274 (319)
Q Consensus       222 i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-~~~~i~~~~~  274 (319)
                      |.+|.  +++..+......   ..+...|+...+++.|+++++.. .++.|.+|..
T Consensus       268 I~~f~V~~~~g~L~~~~~~---~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         268 IAVFSVDPDGGKLELVGIT---PTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             EEEEEEcCCCCEEEEEEEe---ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            87776  455444333211   34455799999999998666655 4567888873

>KOG0642|consensus

Probab=99.61  E-value=4e-14  Score=112.71  Aligned_cols=248  Identities=14%  Similarity=0.198  Sum_probs=167.0

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--------eeeEEe----cCceeeEEcCCCcEEEEcCCC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--------CVFLAF----TWPRGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~----~~~~~l~~~~~g~~~~~~~~~  118 (319)
                      ...|++.+..+++.+....+++++.++.+.+    |+++..        +.+..+    ..+.++++.+++...++++.|
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~----WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKL----WNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhh----hhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            3467788999999998889999999999999    777321        111122    245789999999999999999


Q ss_pred             CeEEEEc-C-CCcEEEEe---cCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        119 HRVQVFQ-S-DGTFVGKF---GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       119 ~~i~~~~-~-~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      +.|+.|+ + +.......   ...+.-.+|...++.+++++....+++++.|++++.|+.....      . ..++.   
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~------~-~~f~~---  435 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES------P-CTFGE---  435 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC------c-cccCC---
Confidence            9999996 1 21111111   1122236788888999999988788999999999999876431      1 11211   


Q ss_pred             cCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCCC-CcccccCcceEEEcCCCcEEEEeCCCCEEE
Q psy13998        194 KAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEGS-EEGQLKFPRGVAVDDQGYISVGDSGNNRIQ  270 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~  270 (319)
                       ......|..+.+-... .+.++....+.-.+++.. +.....+..... .......+.-+...|.+.+.+++..+..|+
T Consensus       436 -~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir  514 (577)
T KOG0642|consen  436 -PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR  514 (577)
T ss_pred             -ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence             2334556666664332 222332222222222221 222222221111 111223455677788888999999999999


Q ss_pred             EEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        271 IFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       271 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++| ..|+.+...      ..|...+++++++|+|-++++++.|+++++|
T Consensus       515 ~~dn~~~~~l~s~------~a~~~svtslai~~ng~~l~s~s~d~sv~l~  558 (577)
T KOG0642|consen  515 FFDNKTGKILHSM------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLW  558 (577)
T ss_pred             cccccccccchhe------eeccceecceeecCCCceEEeecCCceeehh
Confidence            999 678888777      5788889999999999999999999999987

>KOG1332|consensus

Probab=99.61  E-value=6e-14  Score=100.51  Aligned_cols=232  Identities=15%  Similarity=0.112  Sum_probs=155.0

Q ss_pred             ccccCCCccchhccccceeeeeccc-----------CCCCCcCCCCcceEEcC--CCcEEEEeCCCCeEEEecccccccc
Q psy13998         24 IGQVGTTPRSQYLQKRRLQFKIGSR-----------GSEPGCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        24 i~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      |..+....-+..|++.+.+..+++.           .+..||-..++.+++..  -|.++++++.|+.|.+    |..+.
T Consensus        14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi----Wke~~   89 (299)
T KOG1332|consen   14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII----WKEEN   89 (299)
T ss_pred             hhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE----EecCC
Confidence            3333333334555555555443333           22357778899999976  7999999999999999    77654


Q ss_pred             ceeeE------EecCceeeEEcCC--CcEEEEcCCCCeEEEEcC--CCc-EEEEecCCCccCCCCCCceeEEEeCC---C
Q psy13998         91 NCVFL------AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQS--DGT-FVGKFGSMGNKAGQLEHPHYIAVSNT---N  156 (319)
Q Consensus        91 ~~~~~------~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~---g  156 (319)
                      +....      +-..++++++.|.  |-++++++.||.|.+++.  +|. ....+.     ..|.-.++++++.|.   |
T Consensus        90 g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-----~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-----FAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-----hccccccceeeecCcCCCc
Confidence            42211      3447789999886  458888899999998873  322 222221     345556677777764   3


Q ss_pred             -----------eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC----cEEEEeCCCCe
Q psy13998        157 -----------RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN----RVIVSDSNNHR  221 (319)
Q Consensus       157 -----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~  221 (319)
                                 +.|++++.|+.|++|+.+..      +...    ......|....+.+++.|.-    ..+++++.++.
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~------~w~~----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD------SWKL----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCc------chhh----hhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence                       56999999999999988742      1111    11125677778889998853    45788889999


Q ss_pred             EEEEeCCCC--E-EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC--CCceE
Q psy13998        222 VQIFDVNGR--V-ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP--DGQFL  279 (319)
Q Consensus       222 i~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~g~~~  279 (319)
                      +.+|..+.+  . ..++.     .........+.++..|+++..+++++.|.+|..  +|+..
T Consensus       235 viIwt~~~e~e~wk~tll-----~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~  292 (299)
T KOG1332|consen  235 VIIWTKDEEYEPWKKTLL-----EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE  292 (299)
T ss_pred             EEEEEecCccCccccccc-----ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence            999985432  1 11110     112234578999999999999999999999985  45544

>KOG4283|consensus

Probab=99.61  E-value=1.1e-12  Score=96.72  Aligned_cols=200  Identities=14%  Similarity=0.235  Sum_probs=139.9

Q ss_pred             cCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-------------------EecCceeeEEcC-CCcEE
Q psy13998         54 CFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-------------------AFTWPRGIAVGP-DNSIV  112 (319)
Q Consensus        54 ~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~-~g~~~  112 (319)
                      |-..+..+.+++ .|+++++++.|+.|.+    ||++......                   |...+..+.|-| |..+|
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v----~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAV----FDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEE----EEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            446788999988 7899999999999999    8875432111                   112345556666 44689


Q ss_pred             EEcCCCCeEEEEcCCC-cEEEEecCCCccCCCCCCceeEEEeC---CCeEEEEeCCCCEEEEEecCCceeeecCceeeee
Q psy13998        113 VADSSNHRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF  188 (319)
Q Consensus       113 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  188 (319)
                      .+++-|+++++||.+. +....+..+       ..+..-+++|   ...+++++..+-+|++.|+.      .|.+-..+
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me-------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------SGs~sH~L  184 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKME-------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------SGSFSHTL  184 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecC-------ceeehhhcChhhhcceEEEEecCCCcEEEEecc------CCcceeee
Confidence            9999999999999654 334444433       2334444444   35778888899999999987      34554444


Q ss_pred             cccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC--CCEEEEeCCCC--------CCcccccCcceEEEcCCC
Q psy13998        189 GSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN--GRVITSFGSEG--------SEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~g  257 (319)
                            .+|...+.++.++|.. .++++++.|+.|+.||..  ......+....        ....+.....+++++.+|
T Consensus       185 ------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  185 ------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             ------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence                  5667778889999876 456788899999999953  22233332111        123455567899999999


Q ss_pred             cEEEEeCCCCEEEEEc-CCC
Q psy13998        258 YISVGDSGNNRIQIFT-PDG  276 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~-~~g  276 (319)
                      ..+++.+.+.++++|+ ..|
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             hhhhhccCccceEEeecccC
Confidence            9999999999999999 344

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=3.9e-12  Score=98.90  Aligned_cols=223  Identities=20%  Similarity=0.303  Sum_probs=145.1

Q ss_pred             CcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEE
Q psy13998         58 PRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFV  131 (319)
Q Consensus        58 ~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~  131 (319)
                      ..+-.+.++.. +|.++-..++|..    |+..++.. ..+.    ....+.++..+.++++..   .+.+++ ..+...
T Consensus        27 gEgP~w~~~~~~L~w~DI~~~~i~r----~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~---g~~~~~~~~~~~~   98 (307)
T COG3386          27 GEGPVWDPDRGALLWVDILGGRIHR----LDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH---GVRLLDPDTGGKI   98 (307)
T ss_pred             ccCccCcCCCCEEEEEeCCCCeEEE----ecCCcCce-EEEECCCCcccceeecCCCeEEEEcc---ccEEEeccCCcee
Confidence            34556667555 8888888999999    77753322 2222    234556666666666542   355555 334442


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      ..+..... ......++...++++|.+|++...           .+.++.++..+       ......      ..+...
T Consensus        99 t~~~~~~~-~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-------~~~~l~------~~~~~~  164 (307)
T COG3386          99 TLLAEPED-GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-------GVVRLL------DDDLTI  164 (307)
T ss_pred             EEeccccC-CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-------CEEEee------cCcEEe
Confidence            33322211 223478899999999999998766           13455555433       222222      334667


Q ss_pred             ceeEEEcCCC-cEEEEeCCCCeEEEEeCC---CCE----EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC-EEEE
Q psy13998        201 PHYIAVSNTN-RVIVSDSNNHRVQIFDVN---GRV----ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN-RIQI  271 (319)
Q Consensus       201 ~~~~~~~~~g-~~~v~~~~~~~i~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~-~i~~  271 (319)
                      |++|+|+|++ .+|++++..++|+.|+.+   +..    .....     ......|.+++++.+|++|++...++ .|.+
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~-----~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~  239 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF-----DEEPGLPDGMAVDADGNLWVAAVWGGGRVVR  239 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc-----cCCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence            8999999999 789999999999999854   211    11110     12335689999999999997655554 9999


Q ss_pred             EcCCCceEEeecccCCCCCCCCCcceEEEcc-CCc-EEEEeCCC
Q psy13998        272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS-NGN-ILVCDREN  313 (319)
Q Consensus       272 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~-~~v~~~~~  313 (319)
                      |+++|+.+..+      ......+++++|.. +.+ +|++....
T Consensus       240 ~~pdG~l~~~i------~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         240 FNPDGKLLGEI------KLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ECCCCcEEEEE------ECCCCCCccceEeCCCcCEEEEEecCC
Confidence            99999999988      34446788888864 444 88877665

>KOG0267|consensus

Probab=99.60  E-value=4.5e-15  Score=121.37  Aligned_cols=192  Identities=10%  Similarity=0.252  Sum_probs=151.1

Q ss_pred             cCceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998         98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus        98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      ....++.+-..++.+++++.+..+-+|... -..+..+      .+|...+.++.++.+..++.++..++.|++||+.. 
T Consensus        29 aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~------~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-  101 (825)
T KOG0267|consen   29 AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL------TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-  101 (825)
T ss_pred             hhhceeeeeccceeeccCCCceeeccccccCCchhhee------eccCCcceeeecCcchhhhcccccCCceeeeehhh-
Confidence            344555554556788888888777788722 1222223      45667889999999999999999999999999973 


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                           ++.++.+      .++...+..+.|+|-+.+++.++.+..+.+||.. -.....+      .++...+..+.++|
T Consensus       102 -----Ak~vrtL------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~------~s~~~vv~~l~lsP  164 (825)
T KOG0267|consen  102 -----AKIVRTL------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY------KSHTRVVDVLRLSP  164 (825)
T ss_pred             -----hhhhhhh------hccccCcceeeeccceEEeccccccccceehhhhccCceeee------cCCcceeEEEeecC
Confidence                 2444433      5677788889999999888888889999999964 3344555      44556678899999


Q ss_pred             CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        256 QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|++.+.++.|+.+.+|| ..|++...|      ..|...+..+.++|..-++.+++.|+.+++|
T Consensus       165 ~Gr~v~~g~ed~tvki~d~~agk~~~ef------~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~  223 (825)
T KOG0267|consen  165 DGRWVASGGEDNTVKIWDLTAGKLSKEF------KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW  223 (825)
T ss_pred             CCceeeccCCcceeeeeccccccccccc------ccccccccccccCchhhhhccCCCCceeeee
Confidence            999999999999999999 579999888      6788888889999988899999999999998

>KOG1408|consensus

Probab=99.60  E-value=3.6e-14  Score=116.43  Aligned_cols=233  Identities=13%  Similarity=0.164  Sum_probs=169.6

Q ss_pred             ccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCC---CcEEEEeCCCCeEEEecccccccc
Q psy13998         22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPD---NSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~---g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      -++.+++.||++++|+.+.....+..+...        ..|-..+.++.++..   .+++++++.|.-|.+    +|...
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV----~Dv~r  535 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV----YDVKR  535 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE----Eeccc
Confidence            567899999999999998766665555433        456678889998753   358999999999999    88754


Q ss_pred             ceeeE-----EecCceeeEEcCCC--cEEEEcCCCCeEEEEc-C-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEE
Q psy13998         91 NCVFL-----AFTWPRGIAVGPDN--SIVVADSSNHRVQVFQ-S-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS  161 (319)
Q Consensus        91 ~~~~~-----~~~~~~~l~~~~~g--~~~~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~  161 (319)
                      +-...     |-..+.++.|.-+|  ...++++.|+.|+.-. . .+.- ..+...-. ........+++++|+-++.++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g-~~f~r~t~-t~~ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG-RLFPRHTQ-TLSKTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc-eecccccc-ccccceEEEeeeCCCcceEEE
Confidence            32222     34567888887766  4566667776554332 1 1111 11111100 111235688999999999999


Q ss_pred             eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCC
Q psy13998        162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGS  240 (319)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~  240 (319)
                      ++.|..|++|++.      .|+..+.|...   ..+...+-.+..+|.|.++++.+.+..+.+|| ..|+.+.+.     
T Consensus       614 ~cQDrnirif~i~------sgKq~k~FKgs---~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-----  679 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIE------SGKQVKSFKGS---RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-----  679 (1080)
T ss_pred             EecccceEEEecc------ccceeeeeccc---ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-----
Confidence            9999999999987      44666666432   23334566788999999999999999999999 578888777     


Q ss_pred             CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998        241 EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~  275 (319)
                       .+|...++++.|.+|-+-+++.++|+.|.+|...
T Consensus       680 -~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  680 -TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             -cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence             6777789999999999999999999999999843

>KOG1009|consensus

Probab=99.59  E-value=4.7e-13  Score=102.65  Aligned_cols=281  Identities=12%  Similarity=0.121  Sum_probs=168.8

Q ss_pred             ccccccCCCccch-hccccceeeeecccCCC-----------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEec
Q psy13998         22 SGIGQVGTTPRSQ-YLQKRRLQFKIGSRGSE-----------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCF   83 (319)
Q Consensus        22 ~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~   83 (319)
                      ..+.++.|.++.. .++++..+..+.+|...                 ..|...++.+.|+|+|+++++++.++.|.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            4455666666665 77887777776666322                 33557889999999999999999999999954


Q ss_pred             cc----ccccc-----ceeeE-------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCC
Q psy13998         84 PH----FDLKT-----NCVFL-------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEH  146 (319)
Q Consensus        84 ~~----~~~~~-----~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~  146 (319)
                      +.    ++.++     .+.+.       +...+..++|++++..+++++.++.+++|| ..|......      ..|...
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~------~dh~~y  167 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL------DDHEHY  167 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec------cccccc
Confidence            32    01112     11111       335778999999999999999999999999 677777766      567789


Q ss_pred             ceeEEEeCCCeEEEEeCCCCEEEEEecCCceee-ecCceeeeecccCCc----------CCCCCCceeEEEcCCCcEEEE
Q psy13998        147 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ-SDGTFVGKFGSMGNK----------AGQLEHPHYIAVSNTNRVIVS  215 (319)
Q Consensus       147 ~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~v~  215 (319)
                      +++++++|-++++.+-+.+...+.+.+.-.... .-+............          ......-..++|+|+|.++++
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt  247 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT  247 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence            999999998888887777765555544321100 000000000000000          001112244778899988887


Q ss_pred             eCC---------CCeEEEEeCC--CCEEEEeCCCCCCcccc---cCcc-----------eEEEcCCCcEEEEeCCCCEEE
Q psy13998        216 DSN---------NHRVQIFDVN--GRVITSFGSEGSEEGQL---KFPR-----------GVAVDDQGYISVGDSGNNRIQ  270 (319)
Q Consensus       216 ~~~---------~~~i~~~~~~--~~~~~~~~~~~~~~~~~---~~~~-----------~i~~~~~g~~~v~~~~~~~i~  270 (319)
                      ...         -+..|+|+..  .+....+.....  ...   ..|.           .+..-|-+-+|+.+ ..+.|+
T Consensus       248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k--~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svy  324 (434)
T KOG1009|consen  248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK--PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVY  324 (434)
T ss_pred             ccceeeeCCceeeceeEeeccccccCceeecCCCCc--ceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEE
Confidence            542         1334555532  122222211110  000   0000           01112333334443 457899


Q ss_pred             EEcCC-CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        271 IFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       271 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      +||.+ -.++....     ..|...+++++|++||..++..+.||-.
T Consensus       325 vydtq~~~P~~~v~-----nihy~~iTDiaws~dg~~l~vSS~DGyC  366 (434)
T KOG1009|consen  325 VYDTQTLEPLAVVD-----NIHYSAITDIAWSDDGSVLLVSSTDGFC  366 (434)
T ss_pred             EeccccccceEEEe-----eeeeeeecceeecCCCcEEEEeccCCce
Confidence            99954 34444443     3578889999999999988888888764

>KOG4378|consensus

Probab=99.59  E-value=1.7e-13  Score=107.91  Aligned_cols=250  Identities=10%  Similarity=0.074  Sum_probs=165.2

Q ss_pred             cccccccCCCccchh-ccccceeeeecccCCC--CCc--------CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc
Q psy13998         21 VSGIGQVGTTPRSQY-LQKRRLQFKIGSRGSE--PGC--------FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~~--~~~--------~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      ..++.++.|..+..+ .++-..+..+..|...  .+.        -+.-.+|+......+.++++..+.|.+    ||+.
T Consensus        34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vki----wdl~  109 (673)
T KOG4378|consen   34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKI----WDLR  109 (673)
T ss_pred             CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeee----hhhH
Confidence            455777777665532 2222334444333211  110        123345555555578888999999999    9986


Q ss_pred             cceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeC
Q psy13998         90 TNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDS  163 (319)
Q Consensus        90 ~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~  163 (319)
                      .....+    +...+.++.++-...++++.+..|.|.+.. .++.....+...     ....+.-+.+++.. .++.+++
T Consensus       110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~-----sgqsvRll~ys~skr~lL~~as  184 (673)
T KOG4378|consen  110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID-----SGQSVRLLRYSPSKRFLLSIAS  184 (673)
T ss_pred             HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC-----CCCeEEEeecccccceeeEeec
Confidence            433333    334678888887778888888888899888 444333344321     11234567888865 4567788


Q ss_pred             CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEE-EEeCCCCCC
Q psy13998        164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVI-TSFGSEGSE  241 (319)
Q Consensus       164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~  241 (319)
                      .+|.|.+||..|.      .....+.     ..|.....+++|+|.+ .++++-+.|.+|++||...+.. ..+      
T Consensus       185 d~G~VtlwDv~g~------sp~~~~~-----~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l------  247 (673)
T KOG4378|consen  185 DKGAVTLWDVQGM------SPIFHAS-----EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL------  247 (673)
T ss_pred             cCCeEEEEeccCC------Ccccchh-----hhccCCcCcceecCCccceEEEecccceEEEeeccccccccee------
Confidence            9999999999875      2322221     4455666889999866 6788888999999999764332 222      


Q ss_pred             cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC--ceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG--QFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                       ........++|.++|.+++++...|+|+.||..+  .++..+      ..|...+++++|-+.
T Consensus       248 -~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~------sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  248 -TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR------SAHDASVTRVAFQPS  304 (673)
T ss_pred             -eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe------eecccceeEEEeeec
Confidence             1122346799999999999999999999999543  455655      456677888888654

>KOG1538|consensus

Probab=99.59  E-value=5.3e-14  Score=114.66  Aligned_cols=240  Identities=12%  Similarity=0.083  Sum_probs=184.4

Q ss_pred             ccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCC------CCcCCCCcceEEcCCCcEEEEeCCCCeE
Q psy13998          8 KNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE------PGCFTWPRGIAVGPDNSIVVADSSNHRV   79 (319)
Q Consensus         8 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~g~~~~~~~~~~~v   79 (319)
                      -|.+.|.++++++  .+.|.+++++.+|...++++.+..+-.|...      ..|-+.+.+|.|+|-...+++++-+ ..
T Consensus        38 yD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dF  116 (1081)
T KOG1538|consen   38 YDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS-DF  116 (1081)
T ss_pred             EeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh-hc
Confidence            4667788889988  6889999999999999999999887777543      3466889999999988888887643 44


Q ss_pred             EEeccccccccceeeEE--ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCC-
Q psy13998         80 QVCFPHFDLKTNCVFLA--FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-  156 (319)
Q Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-  156 (319)
                      ..    |+........+  .....+.+|..||.+++.+-.+|+|.+-+..|+....+..++   +....+.+++++|+. 
T Consensus       117 gl----WS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpg---g~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  117 GL----WSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPG---GSNSPIWSICWNPSSG  189 (1081)
T ss_pred             cc----cChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCC---CCCCCceEEEecCCCC
Confidence            56    66654333332  235678899999999999999999999998888777776653   345677999999842 


Q ss_pred             ----eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEE
Q psy13998        157 ----RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI  232 (319)
Q Consensus       157 ----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~  232 (319)
                          .++.....+.++..|.++|+       .+..-      ......|.++.+.++|.+++.++.++.+.+|..+|-.+
T Consensus       190 ~G~~di~aV~DW~qTLSFy~LsG~-------~Igk~------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrL  256 (1081)
T KOG1538|consen  190 EGRNDILAVADWGQTLSFYQLSGK-------QIGKD------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRL  256 (1081)
T ss_pred             CCccceEEEEeccceeEEEEecce-------eeccc------ccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEE
Confidence                34444445667777776653       32211      22234688899999999999999999999999999877


Q ss_pred             EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      .++      ...-.++..++..|+++.++.+..||+|..|+.
T Consensus       257 GTv------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  257 GTV------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             eec------cccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            776      334568999999999999999999999988873

>KOG1517|consensus

Probab=99.56  E-value=1.4e-12  Score=111.63  Aligned_cols=251  Identities=13%  Similarity=0.168  Sum_probs=156.2

Q ss_pred             CCCCcceEEcC--CCcEEEEeCCCCeEEEecccccc-ccceeeEEecCc---------eeeEEc--CC-CcEEEEcCCCC
Q psy13998         55 FTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDL-KTNCVFLAFTWP---------RGIAVG--PD-NSIVVADSSNH  119 (319)
Q Consensus        55 ~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~---------~~l~~~--~~-g~~~~~~~~~~  119 (319)
                      ...|..+.+-.  |-.++++++.||.|++|.+-.+. .+.+.+..+...         .++.++  .+ |.+++++ .-.
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVR 1187 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-Cee
Confidence            35677887754  33489999999999996552222 223333322221         223333  22 4455544 467


Q ss_pred             eEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        120 RVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       120 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      .|++||.+.+ .+..+.     .+....++++.-+. .|++++++..||.+++||.+....+   ..+......    ..
T Consensus      1188 ~IRIWDa~~E~~~~diP-----~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h----~~ 1255 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIP-----YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREH----ND 1255 (1387)
T ss_pred             EEEEEecccceeEeecc-----cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc---ccceeeccc----CC
Confidence            8999996544 344442     22334456665543 4799999999999999998743211   222222111    11


Q ss_pred             CCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC
Q psy13998        198 LEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       198 ~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      ...+..+.+.+.| .-+++++.+|.|++||+.......+......-......+++.++++..++++++. ..|.+|+..|
T Consensus      1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            1225667777766 3589999999999999765322221110000000113678999999899999888 9999999999


Q ss_pred             ceEEeecccCCC-CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        277 QFLRAFGCWGSG-DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+..+...+.. ......+.+++|+|---+++++..|..|.||
T Consensus      1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            877665432211 1233457999999987799999999999886

>KOG1272|consensus

Probab=99.56  E-value=6.1e-14  Score=109.31  Aligned_cols=225  Identities=13%  Similarity=0.165  Sum_probs=164.5

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVG  132 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  132 (319)
                      ..|..+.++.+|+.++.++..|.|..    +|..+.....++.   .+.++.|-.+.++|+++ ..+-+++||.+|..+.
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa----~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElH  204 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAA----FDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELH  204 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceee----eecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEe
Confidence            47899999999999999999999999    8887776665554   66788888776655554 5668999999998887


Q ss_pred             EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV  212 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  212 (319)
                      .+..       ...+..+.|.|..-++++++..|.+..-|...      |+.+..+.      ........|..+|-+-+
T Consensus       205 Clk~-------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~------GklVa~~~------t~~G~~~vm~qNP~NaV  265 (545)
T KOG1272|consen  205 CLKR-------HIRVARLEFLPYHFLLVAASEAGFLKYQDVST------GKLVASIR------TGAGRTDVMKQNPYNAV  265 (545)
T ss_pred             ehhh-------cCchhhhcccchhheeeecccCCceEEEeech------hhhhHHHH------ccCCccchhhcCCccce
Confidence            7732       25667889999999999999999998888763      35544432      12233445677787788


Q ss_pred             EEEeCCCCeEEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCC
Q psy13998        213 IVSDSNNHRVQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDG  290 (319)
Q Consensus       213 ~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~  290 (319)
                      +-++..+|.|.+|.++.+ .+..+      ..|...+.+|+++++|++.++.+.|..+.+||.. -..+.++      ..
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKi------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~------~t  333 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKI------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY------RT  333 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHH------HhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee------ec
Confidence            888999999999998653 34444      4566778999999999999999999999999953 3333333      11


Q ss_pred             CCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        291 EFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       291 ~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ......++++..| +++++.++ .+.+|
T Consensus       334 -p~~a~~ls~Sqkg-lLA~~~G~-~v~iw  359 (545)
T KOG1272|consen  334 -PHPASNLSLSQKG-LLALSYGD-HVQIW  359 (545)
T ss_pred             -CCCcccccccccc-ceeeecCC-eeeee
Confidence             2345667777554 44444443 46666

>KOG1524|consensus

Probab=99.55  E-value=5e-13  Score=106.25  Aligned_cols=247  Identities=10%  Similarity=0.099  Sum_probs=160.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCc--------CCCCcce-----EE--cCCCcEEEEeCCCCeEEEeccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC--------FTWPRGI-----AV--GPDNSIVVADSSNHRVQVCFPH   85 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~v-----~~--~~~g~~~~~~~~~~~v~~~~~~   85 (319)
                      ...++++.++.+-..+........+..++.....        -..|..+     ..  ......|+.++.||++.+    
T Consensus        14 ~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i----   89 (737)
T KOG1524|consen   14 SEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI----   89 (737)
T ss_pred             ceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE----
Confidence            3345677777777666655444444333222110        0112222     11  122347888889999998    


Q ss_pred             cccccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEE
Q psy13998         86 FDLKTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVI  159 (319)
Q Consensus        86 ~~~~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~  159 (319)
                      .+.  .+.+.     |...+.+-.|+++|.-+++.+.||.|++|..+|.....+.      .....+.+++|.|+. +++
T Consensus        90 l~k--~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~------Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   90 LNK--SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV------QNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             ecc--cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh------hcCceeEEEEECCCCCceE
Confidence            554  22222     3445567788999998999999999999999987655542      233567899999965 666


Q ss_pred             EEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCC
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG  239 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~  239 (319)
                      ++.+..-.|+-...+.       +.++ +      ..|-.-+.++.+++..+++++++.|-+.++||..|..+..-    
T Consensus       162 ~c~g~h~~IKpL~~n~-------k~i~-W------kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S----  223 (737)
T KOG1524|consen  162 FCQGGHISIKPLAANS-------KIIR-W------RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS----  223 (737)
T ss_pred             EecCCeEEEeeccccc-------ceeE-E------eccCcEEEEeecCccccceeecCCceeEEeecccCcccccC----
Confidence            6655433333222221       2222 1      23445567788999999999999999999999998877665    


Q ss_pred             CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                        ..+...+++++|.|+ ..|+.++. +.++ +.               ......+..++|++||..++++...|.+-
T Consensus       224 --~~~ey~ITSva~npd-~~~~v~S~-nt~R-~~---------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  224 --AAEEYAITSVAFNPE-KDYLLWSY-NTAR-FS---------------SPRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             --Chhccceeeeeeccc-cceeeeee-eeee-ec---------------CCCccceEEEEEcCCCceeeccccCceEE
Confidence              556677899999999 77777653 2333 21               23345688899999999888888887653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.55  E-value=3.7e-11  Score=94.76  Aligned_cols=233  Identities=16%  Similarity=0.184  Sum_probs=133.4

Q ss_pred             CCCcceEEcCCCc-EEEEeC---------CCCeEEEeccccccccceeeEEec-----------CceeeEEcCCCc-EEE
Q psy13998         56 TWPRGIAVGPDNS-IVVADS---------SNHRVQVCFPHFDLKTNCVFLAFT-----------WPRGIAVGPDNS-IVV  113 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~g~-~~~  113 (319)
                      ..|+++ ++|||+ +|++.+         .+..|.+    ||..+.+...++.           .+..++++++|+ +|+
T Consensus        47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v----~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V  121 (352)
T TIGR02658        47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEV----IDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLF  121 (352)
T ss_pred             CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEE----EECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEE
Confidence            467776 999988 677777         7889999    9998888776554           234789999997 566


Q ss_pred             EcCC-CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceee-eecc
Q psy13998        114 ADSS-NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVG-KFGS  190 (319)
Q Consensus       114 ~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~  190 (319)
                      +... +..|.++| ..++.+.++..++.       ..-....++...  ..+.|++.....++.     +|+... ....
T Consensus       122 ~n~~p~~~V~VvD~~~~kvv~ei~vp~~-------~~vy~t~e~~~~--~~~~Dg~~~~v~~d~-----~g~~~~~~~~v  187 (352)
T TIGR02658       122 YQFSPSPAVGVVDLEGKAFVRMMDVPDC-------YHIFPTANDTFF--MHCRDGSLAKVGYGT-----KGNPKIKPTEV  187 (352)
T ss_pred             ecCCCCCEEEEEECCCCcEEEEEeCCCC-------cEEEEecCCccE--EEeecCceEEEEecC-----CCceEEeeeee
Confidence            6655 78999999 67788887754321       111111112222  122333333322211     111110 0000


Q ss_pred             -cCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEe---CCCCCC-cccccCcce---EEEcCCC-cEE
Q psy13998        191 -MGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSF---GSEGSE-EGQLKFPRG---VAVDDQG-YIS  260 (319)
Q Consensus       191 -~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~---i~~~~~g-~~~  260 (319)
                       ......-...|   .+.+ +|+.+++... |.|++.|..+......   ...... ....-.|.+   +++++++ ++|
T Consensus       188 f~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       188 FHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             ecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence             00001112334   3344 6766655554 9999999644322111   111000 000112333   9999986 577


Q ss_pred             EEeC---------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc-E-EEEeCCCCeEEe
Q psy13998        261 VGDS---------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-I-LVCDRENHRIQV  318 (319)
Q Consensus       261 v~~~---------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~-~v~~~~~~~i~v  318 (319)
                      ++..         ..+.|.++| .+++.+..+.       ....+++|+++|||+ + |++...++.|.+
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-------LGHEIDSINVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEe-------CCCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence            7442         236899999 5677777762       234799999999998 4 556656777765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.55  E-value=1.7e-11  Score=90.04  Aligned_cols=228  Identities=15%  Similarity=0.139  Sum_probs=156.9

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec--------CceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--------WPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      ..|++|.+.|||..|++++.. .|..    ++.++.+... +.        ......|++.|++|+++. .+.--..|+.
T Consensus       104 a~Phgiv~gpdg~~Witd~~~-aI~R----~dpkt~evt~-f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa  176 (353)
T COG4257         104 ASPHGIVVGPDGSAWITDTGL-AIGR----LDPKTLEVTR-FPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPA  176 (353)
T ss_pred             CCCceEEECCCCCeeEecCcc-eeEE----ecCcccceEE-eecccccCCCcccceeeCCCccEEEeec-cccceecCcc
Confidence            678999999999999999877 5666    5765544332 22        346678999999999976 3333456666


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      ...+..+..+     +-..|++|+..|+|.+|++.-.++.|...|.....       ...+...   .........+..+
T Consensus       177 ~~~i~vfpaP-----qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~-------aev~p~P---~~~~~gsRriwsd  241 (353)
T COG4257         177 RNVISVFPAP-----QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGH-------AEVVPQP---NALKAGSRRIWSD  241 (353)
T ss_pred             cCceeeeccC-----CCCCCcceEECCCCcEEEEeccccceEEcccccCC-------cceecCC---CcccccccccccC
Confidence            6666666533     23567999999999999998888888888765311       0111100   1112233457778


Q ss_pred             CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCC
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS  287 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~  287 (319)
                      +.|+++++....+.++.||+....-..+...    +....+.++.++..|++|.++...+.|..||+....+..+.    
T Consensus       242 pig~~wittwg~g~l~rfdPs~~sW~eypLP----gs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p----  313 (353)
T COG4257         242 PIGRAWITTWGTGSLHRFDPSVTSWIEYPLP----GSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP----  313 (353)
T ss_pred             ccCcEEEeccCCceeeEeCcccccceeeeCC----CCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEec----
Confidence            9999999999999999999876665555332    33446889999999999999999999999998777666663    


Q ss_pred             CCCCCCCcceEEEccC-CcEEEEeCCCCe
Q psy13998        288 GDGEFKGLEGVAVMSN-GNILVCDRENHR  315 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~-g~~~v~~~~~~~  315 (319)
                        .....+..+..++- |.++.+...-..
T Consensus       314 --~pr~n~gn~ql~gr~ge~W~~e~gvd~  340 (353)
T COG4257         314 --IPRPNSGNIQLDGRPGELWFTEAGVDA  340 (353)
T ss_pred             --CCCCCCCceeccCCCCceeecccCcce
Confidence              22223334455432 346665544333

>KOG0307|consensus

Probab=99.55  E-value=9e-14  Score=119.45  Aligned_cols=233  Identities=13%  Similarity=0.214  Sum_probs=163.4

Q ss_pred             CcceEEcCCCc----EEEEeCCCCeEEEecccccccc---ceeeE-------EecCceeeEEcCCC-cEEEEcCCCCeEE
Q psy13998         58 PRGIAVGPDNS----IVVADSSNHRVQVCFPHFDLKT---NCVFL-------AFTWPRGIAVGPDN-SIVVADSSNHRVQ  122 (319)
Q Consensus        58 ~~~v~~~~~g~----~~~~~~~~~~v~~~~~~~~~~~---~~~~~-------~~~~~~~l~~~~~g-~~~~~~~~~~~i~  122 (319)
                      =+.++|.+.|.    +++.+..||.|.+    |+...   +....       |-..+.++.|++.. ++++++..++.|.
T Consensus        67 F~kL~W~~~g~~~~GlIaGG~edG~I~l----y~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   67 FNKLAWGSYGSHSHGLIAGGLEDGNIVL----YDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ceeeeecccCCCccceeeccccCCceEE----ecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            36788888765    4788889999999    55533   11111       44577899999875 5999999999999


Q ss_pred             EEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        123 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      +||.+.-.. -+. .+ .......+..++|.. ...++.+++.++++.+||++.+      +.+-.+...    ......
T Consensus       143 iWDlnn~~t-P~~-~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~------~pii~ls~~----~~~~~~  209 (1049)
T KOG0307|consen  143 IWDLNKPET-PFT-PG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK------KPIIKLSDT----PGRMHC  209 (1049)
T ss_pred             EeccCCcCC-CCC-CC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC------CcccccccC----CCccce
Confidence            999554211 111 11 122335678888876 3467888888999999999864      222222111    111345


Q ss_pred             eeEEEcCCC--cEEEEeCCC--CeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC
Q psy13998        202 HYIAVSNTN--RVIVSDSNN--HRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP  274 (319)
Q Consensus       202 ~~~~~~~~g--~~~v~~~~~--~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~  274 (319)
                      ..++|+|++  +++++...+  -.|..||..  ...++.+      ..|...+.++.|.+.+ +++++++.|++|..|+.
T Consensus       210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~------~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~  283 (1049)
T KOG0307|consen  210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL------EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP  283 (1049)
T ss_pred             eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh------cccccceeeeccCCCCchhhhcccCCCCeeEecC
Confidence            679999987  344443332  468899953  3344444      4667778899998876 89999999999999994


Q ss_pred             -CCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        275 -DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       275 -~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                       +|+.+..+      .....+...+.|.|..- ++++.+-+|.|.||
T Consensus       284 ~tgEvl~~~------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  284 NTGEVLGEL------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             CCceEeeec------CCCCcceeeeeecCCCcchhhhheeccceeee
Confidence             68888888      55667889999998765 88999999999875

>KOG0264|consensus

Probab=99.54  E-value=1e-12  Score=102.03  Aligned_cols=204  Identities=12%  Similarity=0.195  Sum_probs=143.4

Q ss_pred             CcCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceee----E-------EecCceeeEEcCCC-cEEEEcCCCC
Q psy13998         53 GCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVF----L-------AFTWPRGIAVGPDN-SIVVADSSNH  119 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~----~-------~~~~~~~l~~~~~g-~~~~~~~~~~  119 (319)
                      ||...=.+|+|++... .+++++.+++|.+    |++......    .       +-..+..++|++-. .+|.+.+.++
T Consensus       175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~l----wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICL----WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eecccccccccccccceeEeeccCCCcEEE----EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            3434456788888655 6888899999999    776533221    1       22356778888754 6899999999


Q ss_pred             eEEEEc-CCC--cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        120 RVQVFQ-SDG--TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       120 ~i~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      .+.+|| ..+  +....      ...|...+++++|.| ++.++++++.|++|.+||++...     +.+..+      .
T Consensus       251 ~L~iwD~R~~~~~~~~~------~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-----~~lh~~------e  313 (422)
T KOG0264|consen  251 KLMIWDTRSNTSKPSHS------VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-----KPLHTF------E  313 (422)
T ss_pred             eEEEEEcCCCCCCCccc------ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-----cCceec------c
Confidence            999999 322  22222      256778889999999 67889999999999999998421     233333      5


Q ss_pred             CCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC--CCEEE-EeCCCCC------CcccccCcceEEEcCCCc-EEEEeC
Q psy13998        196 GQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN--GRVIT-SFGSEGS------EEGQLKFPRGVAVDDQGY-ISVGDS  264 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~--~~~~~-~~~~~~~------~~~~~~~~~~i~~~~~g~-~~v~~~  264 (319)
                      .|...+..+.++|.. .++++.+.++++.+||.+  |+... .....+.      -.+|...+..+.++|... .+++.+
T Consensus       314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            566778889999975 678888899999999964  22110 0000000      135677788899999864 667778


Q ss_pred             CCCEEEEEcCCCc
Q psy13998        265 GNNRIQIFTPDGQ  277 (319)
Q Consensus       265 ~~~~i~~~~~~g~  277 (319)
                      .|+.+.+|.....
T Consensus       394 eDN~LqIW~~s~~  406 (422)
T KOG0264|consen  394 EDNILQIWQMAEN  406 (422)
T ss_pred             CCceEEEeecccc
Confidence            8999999997543

>KOG4659|consensus

Probab=99.54  E-value=6.3e-12  Score=109.68  Aligned_cols=253  Identities=23%  Similarity=0.320  Sum_probs=161.6

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcC-CCcEEEEcCCCCeEEEEc-CC
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGP-DNSIVVADSSNHRVQVFQ-SD  127 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~-~g~~~~~~~~~~~i~~~~-~~  127 (319)
                      +-.|.+++..|||.+++.+.  +.|+.+.|+-+..   .+.++     .+-.-|+++| +|.+|+++...++|+... ..
T Consensus       364 L~aPvala~a~DGSl~VGDf--NyIRRI~~dg~v~---tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~  438 (1899)
T KOG4659|consen  364 LFAPVALAYAPDGSLIVGDF--NYIRRISQDGQVS---TILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLE  438 (1899)
T ss_pred             eeceeeEEEcCCCcEEEccc--hheeeecCCCceE---EEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCC
Confidence            56889999999999998754  5677644432221   12222     2446789998 578999998887777664 22


Q ss_pred             CcEEE----EecCCC---------c------cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeee
Q psy13998        128 GTFVG----KFGSMG---------N------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF  188 (319)
Q Consensus       128 ~~~~~----~~~~~~---------~------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  188 (319)
                      ++...    .+...|         .      ....+..|.+|+++.+|.+|++++  ..|++.|.+|.+.+.-|.-..+.
T Consensus       439 ~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~  516 (1899)
T KOG4659|consen  439 PQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQH  516 (1899)
T ss_pred             ccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCcc
Confidence            21110    000000         0      123456789999999999999876  56999998886544333221111


Q ss_pred             ------cccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC--------------CcccccC
Q psy13998        189 ------GSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS--------------EEGQLKF  247 (319)
Q Consensus       189 ------~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~  247 (319)
                            .......-++..|+.++++| ++.+++.+  ++.|...+.+.+.....+.+..              ....+..
T Consensus       517 ~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~  594 (1899)
T KOG4659|consen  517 PPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLI  594 (1899)
T ss_pred             CccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhh
Confidence                  11112244678999999998 67888876  4577777776655533322110              1112334


Q ss_pred             cceEEEcCCCcEEEEeCCCCE---EEEEcCCCceEEeecccC--------------------CCCCCCCCcceEEEccCC
Q psy13998        248 PRGVAVDDQGYISVGDSGNNR---IQIFTPDGQFLRAFGCWG--------------------SGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       248 ~~~i~~~~~g~~~v~~~~~~~---i~~~~~~g~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~g  304 (319)
                      +.+|+++++|.+|++.+...+   |+....+|+. ..+....                    +...+++.|.++|++|||
T Consensus       595 ~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i-~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg  673 (1899)
T KOG4659|consen  595 QRDIAVGTDGALYVAESDGRRINRVRKLSTDGTI-SILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDG  673 (1899)
T ss_pred             hhceeecCCceEEEEeccchhhhheEEeccCceE-EEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCC
Confidence            688999999999999987644   4555566633 2221100                    224567889999999999


Q ss_pred             cEEEEeCCCCeEE
Q psy13998        305 NILVCDRENHRIQ  317 (319)
Q Consensus       305 ~~~v~~~~~~~i~  317 (319)
                      .+++++..+-+||
T Consensus       674 ~v~IAD~gN~rIr  686 (1899)
T KOG4659|consen  674 DVIIADSGNSRIR  686 (1899)
T ss_pred             cEEEecCCchhhh
Confidence            9999999987775

>KOG1034|consensus

Probab=99.54  E-value=3.4e-13  Score=100.75  Aligned_cols=239  Identities=14%  Similarity=0.181  Sum_probs=153.1

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA  141 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~  141 (319)
                      .++++++.-|.|++    +|..+.....    +-..++.+.+.|+. +++++++.|..|++|+ .+...+..+...   .
T Consensus       106 p~la~~G~~GvIrV----id~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~---e  178 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRV----IDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV---E  178 (385)
T ss_pred             eeEEeecceeEEEE----EecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc---c
Confidence            37777788899999    7776554433    44578889999986 6999999999999999 667777766443   7


Q ss_pred             CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC----------------cCCCCCCceeEE
Q psy13998        142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN----------------KAGQLEHPHYIA  205 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  205 (319)
                      +|-..+.++.++.+|..+++++.|.++++|++..+.+...-+....+.....                ..-|...+.++.
T Consensus       179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            7888999999999999999999999999999984321110011000000000                000111111121


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCC--CCEEEEeCCC-C--CCcccccCcc------eEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDVN--GRVITSFGSE-G--SEEGQLKFPR------GVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~-~--~~~~~~~~~~------~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      +  =|.++++-+.++.|..|-+.  ++.+...... .  ...+++..+.      ..++++-+++++.+...+.|++||.
T Consensus       259 w--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  259 W--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             H--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence            1  14677777778899999862  1111111000 0  0012233333      3456777889999999999999995


Q ss_pred             CCc-e--EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        275 DGQ-F--LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       275 ~g~-~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.. .  ..++..    ......+...+|+.||.+++....++.|.-|
T Consensus       337 ~~~ep~~~ttl~~----s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  337 DNNEPPKCTTLTH----SKSGSTVRQTSFSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             CCCCCccCceEEe----ccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence            421 1  111110    2233567888999999999888889888655

>KOG0321|consensus

Probab=99.53  E-value=1.2e-12  Score=106.06  Aligned_cols=251  Identities=10%  Similarity=0.149  Sum_probs=147.8

Q ss_pred             CCcceEEcC---CCcEEEEeCCCCeEEEeccccccccce----------eeEEecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         57 WPRGIAVGP---DNSIVVADSSNHRVQVCFPHFDLKTNC----------VFLAFTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        57 ~~~~v~~~~---~g~~~~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      .|.+..|++   ..++|+.+..+|.|.+    ++.....          ...|...+.++.+.|....+++.++|.+++.
T Consensus        51 pPf~~sFs~~~n~eHiLavadE~G~i~l----~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~  126 (720)
T KOG0321|consen   51 PPFADSFSAAPNKEHILAVADEDGGIIL----FDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP  126 (720)
T ss_pred             CCccccccCCCCccceEEEecCCCceee----ecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeee
Confidence            444556654   2347777788999999    6654311          1226667788999995568999999999999


Q ss_pred             EcCC-CcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeec-cc-C-------
Q psy13998        124 FQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG-SM-G-------  192 (319)
Q Consensus       124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~-~-------  192 (319)
                      ||.. ++....-    ...+|...+.+++|.+. ..+|++++.|+.|.+||++-...+..-.+...+. .. +       
T Consensus       127 Wdvk~s~l~G~~----~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  127 WDVKTSRLVGGR----LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             eeeccceeecce----eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence            9944 4443331    11677788899999994 5789999999999999986422000000000000 00 0       


Q ss_pred             ------CcCCCC----CCceeEEEcCCCcEEEEeC-CCCeEEEEeCCCCE-EEEeCCCC-----CCcccccCcceEEEcC
Q psy13998        193 ------NKAGQL----EHPHYIAVSNTNRVIVSDS-NNHRVQIFDVNGRV-ITSFGSEG-----SEEGQLKFPRGVAVDD  255 (319)
Q Consensus       193 ------~~~~~~----~~~~~~~~~~~g~~~v~~~-~~~~i~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~i~~~~  255 (319)
                            ....+.    ..++.+.+ .|...+++++ .|+.|++||..-.. .......+     ...........+..|.
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             hhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence                  000111    11233334 4555555555 49999999964211 11111000     0011233456788898


Q ss_pred             CCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCC--cceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        256 QGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKG--LEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~--~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .|.++++...|+.|+.|+..+.-+......   .++...  -..-..+||+..+++++.|....+|
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~---sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw  344 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSISPVAEF---SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIW  344 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCcCchhhc---cCcccceeeeeeecCCCCceEeccCCCcceeee
Confidence            897777767799999999543322222110   111111  1112457899999999999998887

>KOG0322|consensus

Probab=99.53  E-value=1.3e-12  Score=94.90  Aligned_cols=249  Identities=11%  Similarity=0.132  Sum_probs=148.8

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      +|...+.++.|..+++ ++++...|.|.+    |.+++......+.     .+..+..-|+ ..+.+.+++..+..|+..
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~----w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKM----WVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEE----EEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            5667788999988776 677888899999    8887766554333     3344444454 344555666677777633


Q ss_pred             C-cEEEE--e-------------------------cCCC--------------------ccCCCCCCceeEEEeC-CC--
Q psy13998        128 G-TFVGK--F-------------------------GSMG--------------------NKAGQLEHPHYIAVSN-TN--  156 (319)
Q Consensus       128 ~-~~~~~--~-------------------------~~~~--------------------~~~~~~~~~~~l~~~~-~g--  156 (319)
                      + ..+..  +                         ...+                    ........+.+..+.. .+  
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            2 11100  0                         0000                    0001112222222221 22  


Q ss_pred             eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC---CCEEE
Q psy13998        157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN---GRVIT  233 (319)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~---~~~~~  233 (319)
                      -+++++.+++.+.+||+.......  ++............+.....++.+++.-.-=++++.+..+..|+.+   +....
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~--~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKII--QLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceee--ccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            345677889999999998531111  0111111111112334455666666432222455556677777743   22211


Q ss_pred             EeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      ....    ......+.++.+-||++++++++.|++|++|+ .+.+.+..+      .-|...+++++|+|+..++++++.
T Consensus       244 ~~e~----~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL------kyHsagvn~vAfspd~~lmAaask  313 (323)
T KOG0322|consen  244 RKEI----TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL------KYHSAGVNAVAFSPDCELMAAASK  313 (323)
T ss_pred             cceE----EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh------hhhhcceeEEEeCCCCchhhhccC
Confidence            1000    11112357889999999999999999999999 677888777      567788999999999999999999


Q ss_pred             CCeEEeC
Q psy13998        313 NHRIQVF  319 (319)
Q Consensus       313 ~~~i~v~  319 (319)
                      |.+|.+|
T Consensus       314 D~rISLW  320 (323)
T KOG0322|consen  314 DARISLW  320 (323)
T ss_pred             CceEEee
Confidence            9999998

>KOG0303|consensus

Probab=99.52  E-value=2.9e-12  Score=98.18  Aligned_cols=200  Identities=13%  Similarity=0.244  Sum_probs=139.8

Q ss_pred             CCCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeEEe-----------cCceeeEEcCCC-cEEEEcCC
Q psy13998         51 EPGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----------TWPRGIAVGPDN-SIVVADSS  117 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~g-~~~~~~~~  117 (319)
                      ..||...+..++|+| +...+++++.|.+|.+    |.+...+....+           ..+.-++++|.- +++++++.
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v----W~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV----WQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEE----EECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            457888999999999 6668999999999999    777655544422           244557888864 68888899


Q ss_pred             CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        118 NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       118 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      |+.|.+|+ .+|+.+-.+.       |...+.++.|+.+|.++++.+.|.+|++||.+..      +++..-.     ..
T Consensus       153 Dn~v~iWnv~tgeali~l~-------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------~~v~e~~-----~h  214 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------TVVSEGV-----AH  214 (472)
T ss_pred             CceEEEEeccCCceeeecC-------CCCeEEEEEeccCCceeeeecccceeEEEcCCCC------cEeeecc-----cc
Confidence            99999999 6777666552       5677899999999999999999999999999854      3333221     01


Q ss_pred             CCCCceeEEEcCCCcEEEEeC---CCCeEEEEeCCCC--E--EEEeCCCCCCcccccCcceE---EEcCCC-cEEEEeCC
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNGR--V--ITSFGSEGSEEGQLKFPRGV---AVDDQG-YISVGDSG  265 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~---~~~~i~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~i---~~~~~g-~~~v~~~~  265 (319)
                      .-..+....|-.+|.++.++.   .+..+-+||++.-  .  ...+          ..-.++   -+|++. -+|+++-+
T Consensus       215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el----------DtSnGvl~PFyD~dt~ivYl~GKG  284 (472)
T KOG0303|consen  215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL----------DTSNGVLLPFYDPDTSIVYLCGKG  284 (472)
T ss_pred             cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe----------ccCCceEEeeecCCCCEEEEEecC
Confidence            112344455666778777765   3677889996531  1  1222          112233   346764 58999999


Q ss_pred             CCEEEEEcCCCc--eEEee
Q psy13998        266 NNRIQIFTPDGQ--FLRAF  282 (319)
Q Consensus       266 ~~~i~~~~~~g~--~~~~~  282 (319)
                      |+.|+.|..+..  .+..+
T Consensus       285 D~~IRYyEit~d~P~~hyl  303 (472)
T KOG0303|consen  285 DSSIRYFEITNEPPFVHYL  303 (472)
T ss_pred             CcceEEEEecCCCceeEEe
Confidence            999999985433  34444

>KOG0303|consensus

Probab=99.52  E-value=8.6e-12  Score=95.63  Aligned_cols=196  Identities=14%  Similarity=0.229  Sum_probs=134.0

Q ss_pred             cCceeeEEcCC-CcEEEEcCCCCeEEEEc-CCCcEEEEecCC-CccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEec
Q psy13998         98 TWPRGIAVGPD-NSIVVADSSNHRVQVFQ-SDGTFVGKFGSM-GNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDV  173 (319)
Q Consensus        98 ~~~~~l~~~~~-g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~  173 (319)
                      ..+..++|+|- .+.+++++.|.+|.+|. +++........+ ....+|...+.-++++| ..+++++++.|+.|.+||.
T Consensus        82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv  161 (472)
T KOG0303|consen   82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV  161 (472)
T ss_pred             ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence            35577888885 46889999999999999 554322221111 11156778888899999 4588999999999999999


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccc-ccCcceE
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQ-LKFPRGV  251 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i  251 (319)
                      .+.      ..+-.+       .|...+.++.|+.+|.++++.+.|..|++||+ .++.+..-      .+| ...+..+
T Consensus       162 ~tg------eali~l-------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG~k~~Ra  222 (472)
T KOG0303|consen  162 GTG------EALITL-------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEGAKPARA  222 (472)
T ss_pred             cCC------ceeeec-------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccCCCccee
Confidence            853      222222       25667789999999999999999999999996 55555443      111 2345667


Q ss_pred             EEcCCCcEEEEeC---CCCEEEEEcCCC----ceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        252 AVDDQGYISVGDS---GNNRIQIFTPDG----QFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       252 ~~~~~g~~~v~~~---~~~~i~~~~~~g----~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      .|-.+|.++.++.   .+..+-+|+++.    -.+..+      + ..+.+.-=-+++|.+ +|++|-+|+.||.|
T Consensus       223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el------D-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL------D-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             EEeccCceeeeccccccccceeccCcccccCcceeEEe------c-cCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            7777888666654   456788999642    112222      1 111222223577776 89999999999976

>KOG0269|consensus

Probab=99.51  E-value=3.5e-13  Score=111.33  Aligned_cols=199  Identities=14%  Similarity=0.192  Sum_probs=134.1

Q ss_pred             ceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCce
Q psy13998        100 PRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus       100 ~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      ...|...++- ++.+++..--.|+.++++..........+...........+.+.. +.+++++++.+|.|.+||+.-..
T Consensus        42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~  121 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI  121 (839)
T ss_pred             cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence            3566666665 355555444445555544322111111011122223445666764 46889999999999999997310


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                         ..+.+..+      ..|....+.+.|++.. +++++++.|+.|+.||... .....+      .+....++.++|+|
T Consensus       122 ---rnk~l~~f------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~------~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  122 ---RNKLLTVF------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF------RSNSESIRDVKFSP  186 (839)
T ss_pred             ---cchhhhHh------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc------cccchhhhceeecc
Confidence               11222222      4566778889998754 8999999999999999643 333333      33455689999998


Q ss_pred             C-CcEEEEeCCCCEEEEEcCC--CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        256 Q-GYISVGDSGNNRIQIFTPD--GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 ~-g~~~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      . ++.|++...+|.+.+||..  .+....+      ..|...+.++.|+|++.++++++.|+.|+||
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~------~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKL------TAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchhHHHHh------hcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            6 6899999999999999942  3333444      5688899999999999999999999999999

>KOG0771|consensus

Probab=99.51  E-value=1.1e-12  Score=101.04  Aligned_cols=192  Identities=14%  Similarity=0.168  Sum_probs=129.5

Q ss_pred             eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee
Q psy13998        101 RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      ..++++.+|..+.+++.|+.+++|+ ++-..+...      ..+...+.++.|+|||+++++-+.+ ...+|+.+..   
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g---  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG---  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC---
Confidence            6789999999999999999999999 765544433      4455788999999999999998888 8999998742   


Q ss_pred             ecCceeeeecccCCcCCCCCCceeEEEcCCC---cEEEEeC--CCCeEEEEeCC---C-CEEEEeCCCCCCcccccCcce
Q psy13998        180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN---RVIVSDS--NNHRVQIFDVN---G-RVITSFGSEGSEEGQLKFPRG  250 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~v~~~--~~~~i~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~  250 (319)
                         ..+......    ........+.|..++   .+++++.  ..+.|..++..   + ...+..    ........+.+
T Consensus       218 ---~~~a~~t~~----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~----~~~~~~~siSs  286 (398)
T KOG0771|consen  218 ---AALARKTPF----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR----KKIKRFKSISS  286 (398)
T ss_pred             ---chhhhcCCc----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh----hhhhccCccee
Confidence               222222110    001111223444333   3443332  23445554421   1 111111    00234456899


Q ss_pred             EEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        251 VAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       251 i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ++++.+|++++.++.+|.|.+++. +-+.++...     ..|...++++.|+||.+..++-+.+..++|
T Consensus       287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-----~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-----EAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh-----hhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            999999999999999999999994 444444443     467789999999999998888888777665

>KOG0649|consensus

Probab=99.50  E-value=3.9e-11  Score=86.36  Aligned_cols=262  Identities=12%  Similarity=0.136  Sum_probs=150.7

Q ss_pred             cccccCCCccchhccccceeeeeccc---------CCC---------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecc
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQFKIGSR---------GSE---------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFP   84 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~~~~~~~---------~~~---------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~   84 (319)
                      .|-..+++|-++++..+.....+...         ...         .+|-..++.++|.  ..+++++ +||.|+-|. 
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~-   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWE-   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEee-
Confidence            34455666767776665544322111         111         2344566778886  2344444 469999954 


Q ss_pred             ccccccc--e---ee----------EEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCce
Q psy13998         85 HFDLKTN--C---VF----------LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        85 ~~~~~~~--~---~~----------~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~  148 (319)
                       |+-...  .   .+          ...+.+++|.++|..+-++.+++|+.++.|| .+|+..+++      .+|..+++
T Consensus        88 -W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~------rGHtDYvH  160 (325)
T KOG0649|consen   88 -WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY------RGHTDYVH  160 (325)
T ss_pred             -ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE------cCCcceee
Confidence             222101  0   00          1334668899998755444444899999999 889988888      78999999


Q ss_pred             eEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc----CCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        149 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK----AGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       149 ~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                      +++.......+++++.||++++||.++.      +.+..++.....    +.....+.+++.  +...++++. ...+.+
T Consensus       161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~------k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lsl  231 (325)
T KOG0649|consen  161 SVVGRNANGQILSGAEDGTVRVWDTKTQ------KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSL  231 (325)
T ss_pred             eeeecccCcceeecCCCccEEEEecccc------ceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeE
Confidence            9988665556788999999999999865      333333222111    011112333444  334555544 557889


Q ss_pred             EeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        225 FDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       225 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      |.. ..+....+..+       .....+.|..  ..+++++..+.|.-|..+|.+...+      +..........+...
T Consensus       232 whLrsse~t~vfpip-------a~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~i------p~~s~~c~s~s~~~~  296 (325)
T KOG0649|consen  232 WHLRSSESTCVFPIP-------ARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANI------PVESTACYSASWQTS  296 (325)
T ss_pred             EeccCCCceEEEecc-------cceeEeeeec--ceEEEeccccceeeeeeccEEEEec------cCCccceeeecccCC
Confidence            995 44444444221       1234455654  3556666678899999988766555      222222333333222


Q ss_pred             -CcEEEEeCCCCeEEeC
Q psy13998        304 -GNILVCDRENHRIQVF  319 (319)
Q Consensus       304 -g~~~v~~~~~~~i~v~  319 (319)
                       -+++-.++..+++.|+
T Consensus       297 p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  297 PIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ceEEEEecccceeeeee
Confidence             2355555566666553

>KOG4378|consensus

Probab=99.50  E-value=2.4e-12  Score=101.51  Aligned_cols=230  Identities=15%  Similarity=0.150  Sum_probs=153.8

Q ss_pred             CcceEEcCCCcEEEE-eCCCCeEEEeccccccccc--eee--E--EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         58 PRGIAVGPDNSIVVA-DSSNHRVQVCFPHFDLKTN--CVF--L--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~-~~~~~~v~~~~~~~~~~~~--~~~--~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      +..+.|.....+.++ .++|..+++    |.....  ...  .  ..+...|++......+.++++..+.|.+||...+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~----~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRI----KEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL  112 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEE----ecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence            566777765544333 345677777    554211  111  0  12234555555555677888889999999966665


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      +.++.     .+|...+.++.+...+.++++.+..|.|.+....+..      ....+.     ...-....-+.+++..
T Consensus       113 ~hr~l-----kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~------~tt~f~-----~~sgqsvRll~ys~sk  176 (673)
T KOG4378|consen  113 IHRFL-----KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ------KTTTFT-----IDSGQSVRLLRYSPSK  176 (673)
T ss_pred             Hhhhc-----cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc------ccccee-----cCCCCeEEEeeccccc
Confidence            55443     5677888999998888999999988999988776431      111111     1111223457788765


Q ss_pred             -cEEEEeCCCCeEEEEeCCCCEE-EEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCCCce-EEeecccC
Q psy13998        211 -RVIVSDSNNHRVQIFDVNGRVI-TSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDGQF-LRAFGCWG  286 (319)
Q Consensus       211 -~~~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~g~~-~~~~~~~~  286 (319)
                       .++.+.+.+|.|.+||.+|+.. ..+.     ..|.....+|+|+|.. .++++-+.|.+|++||...+. ...+    
T Consensus       177 r~lL~~asd~G~VtlwDv~g~sp~~~~~-----~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l----  247 (673)
T KOG4378|consen  177 RFLLSIASDKGAVTLWDVQGMSPIFHAS-----EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL----  247 (673)
T ss_pred             ceeeEeeccCCeEEEEeccCCCcccchh-----hhccCCcCcceecCCccceEEEecccceEEEeeccccccccee----
Confidence             4667778899999999887543 2221     4455667899999986 588888999999999954332 2222    


Q ss_pred             CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        287 SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                         ........++|.++|.+++++...|.|..|
T Consensus       248 ---~y~~Plstvaf~~~G~~L~aG~s~G~~i~Y  277 (673)
T KOG4378|consen  248 ---TYSHPLSTVAFSECGTYLCAGNSKGELIAY  277 (673)
T ss_pred             ---eecCCcceeeecCCceEEEeecCCceEEEE
Confidence               223356889999999999999999988654

>KOG1334|consensus

Probab=99.50  E-value=3.4e-13  Score=105.82  Aligned_cols=284  Identities=14%  Similarity=0.146  Sum_probs=185.6

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC---------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEeccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE---------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      ...+..+.|...+..|.+++-++++-.|+..         .||...+.--.|-|.  ..-+++++.|+.|++    -.+.
T Consensus       142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~----s~i~  217 (559)
T KOG1334|consen  142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV----SEIL  217 (559)
T ss_pred             CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee----eeec
Confidence            5678888888899999999888888777665         345555555555552  245777888888887    4432


Q ss_pred             cceee-------EEecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEE
Q psy13998         90 TNCVF-------LAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVI  159 (319)
Q Consensus        90 ~~~~~-------~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~  159 (319)
                      ..+..       .+-..++-+++.|+. .-|++++.++.+.-+| ..+.....+..........-....++++|.. ..+
T Consensus       218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f  297 (559)
T KOG1334|consen  218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF  297 (559)
T ss_pred             cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence            22221       134466778888875 5788888899998888 3333222221110001111255788999955 577


Q ss_pred             EEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC---C-------
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN---G-------  229 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~---~-------  229 (319)
                      .+++.+..+++||............+..+............++|++++.++.-+.+...+-.|++|+.+   |       
T Consensus       298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s  377 (559)
T KOG1334|consen  298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSS  377 (559)
T ss_pred             ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCc
Confidence            788888889999876432222223444454444444555678999999776555555667789999643   3       


Q ss_pred             ---CEEEEeCCCCCCccccc--CcceEEE-cCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        230 ---RVITSFGSEGSEEGQLK--FPRGVAV-DDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       230 ---~~~~~~~~~~~~~~~~~--~~~~i~~-~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                         ..++..     -.+|.+  .+.++-| .|...++++++.-|.|.+|++ .++.++.+      .+...-+++|.-+|
T Consensus       378 ~~~~~~k~v-----YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M------egDr~VVNCLEpHP  446 (559)
T KOG1334|consen  378 PREQYVKRV-----YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM------EGDRHVVNCLEPHP  446 (559)
T ss_pred             chhhccchh-----hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh------hcccceEeccCCCC
Confidence               111110     023322  2445544 577789999999999999995 56777777      34334688888888


Q ss_pred             CCcEEEEeCCCCeEEeC
Q psy13998        303 NGNILVCDRENHRIQVF  319 (319)
Q Consensus       303 ~g~~~v~~~~~~~i~v~  319 (319)
                      ---++++.+-+..|+||
T Consensus       447 ~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  447 HLPVLASSGIDHDVKIW  463 (559)
T ss_pred             CCchhhccCCccceeee
Confidence            87899999999999999

>KOG1524|consensus

Probab=99.49  E-value=9.5e-13  Score=104.74  Aligned_cols=219  Identities=11%  Similarity=0.126  Sum_probs=148.3

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-Ee---cCceeeEEcC-------CCcEEEEcCCCCeEEEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-AF---TWPRGIAVGP-------DNSIVVADSSNHRVQVF  124 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~---~~~~~l~~~~-------~g~~~~~~~~~~~i~~~  124 (319)
                      ..+.++.+..+..+|.++.. +.+.+|   |+..+..... .+   ..|..+..-+       ....++..+.||++.+.
T Consensus        15 e~vc~v~w~~~eei~~~~dD-h~~~~~---~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   15 EKVCCVDWSSNEEIYFVSDD-HQIFKW---SDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             eeEEeecccccceEEEeccC-ceEEEe---ecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            34457777777777666554 445441   4443222111 11   1222222211       22467777889999999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      +..|+....+      ..|...+.+-.|+++|.-+++.+.||.|++|...|-.       ....      ......+.++
T Consensus        91 ~k~~rVE~sv------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-------RStl------~Q~~~~v~c~  151 (737)
T KOG1524|consen   91 NKSARVERSI------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-------RSTV------VQNEESIRCA  151 (737)
T ss_pred             cccchhhhhh------hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-------HHHH------hhcCceeEEE
Confidence            9988877666      5666777778899999999999999999999887631       1111      1223457889


Q ss_pred             EEcCCC-cEEEEeCCCCeEEEE--eCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEe
Q psy13998        205 AVSNTN-RVIVSDSNNHRVQIF--DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRA  281 (319)
Q Consensus       205 ~~~~~g-~~~v~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~  281 (319)
                      ++.|+. +++++...  .+++=  .++.+.++.       ..|-.-+.++.|++..+++++++.|-+..+||..|..+..
T Consensus       152 ~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~W-------kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~  222 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQGG--HISIKPLAANSKIIRW-------RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT  222 (737)
T ss_pred             EECCCCCceEEecCC--eEEEeecccccceeEE-------eccCcEEEEeecCccccceeecCCceeEEeecccCccccc
Confidence            999976 45555433  44443  344444443       4555567889999999999999999999999999988876


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      -      ..|...+++++|.|| .+|+.++.+
T Consensus       223 S------~~~ey~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  223 S------AAEEYAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             C------Chhccceeeeeeccc-cceeeeeee
Confidence            6      567788999999999 777777653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.48  E-value=2.5e-11  Score=91.17  Aligned_cols=209  Identities=14%  Similarity=0.196  Sum_probs=118.2

Q ss_pred             CceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998         99 WPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus        99 ~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      .+.+|+++|+ +.+|+.....+.|+.++.+|+.++++...     ....+.+|++..++.++++...++.+.++++....
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~-----g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLD-----GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-S-----S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCC-----CCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            5899999997 46888888889999999999999888643     24678999999889888888788999988874211


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCC-CeEEEEeC--CCCEEEEeCCC--CCCcccccCcceE
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNN-HRVQIFDV--NGRVITSFGSE--GSEEGQLKFPRGV  251 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~-~~i~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i  251 (319)
                      ..........+.. +.....-...-++++++.+ ++|++--.+ ..|+.++.  ...........  .........+.++
T Consensus        98 ~~~~~~~~~~~~l-~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   98 TSLDRADVQKISL-GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             TT--EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             cccchhhceEEec-ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence            0000011111111 1111122346789999865 566553322 23455543  22221111100  0012233457899


Q ss_pred             EEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCC---CCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        252 AVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG---DGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       252 ~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      +++|. |++|+....+..|..+|.+|+++..+......   ......|.+|+++++|++|+++--+
T Consensus       177 ~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN  242 (248)
T PF06977_consen  177 SYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN  242 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred             EEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence            99987 68999999999999999999988877543211   1234679999999999999988644

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4328|consensus

Probab=99.48  E-value=6.2e-12  Score=98.05  Aligned_cols=241  Identities=15%  Similarity=0.187  Sum_probs=151.1

Q ss_pred             CCCcceEEcCCC--cEEEEeCCCCeEEEecccccccccee-----eE---EecCceeeEEcCCC-cEEEEcCCCCeEEEE
Q psy13998         56 TWPRGIAVGPDN--SIVVADSSNHRVQVCFPHFDLKTNCV-----FL---AFTWPRGIAVGPDN-SIVVADSSNHRVQVF  124 (319)
Q Consensus        56 ~~~~~v~~~~~g--~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~---~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~  124 (319)
                      ..+.+++|.|..  ++++++...|.|-+    ||..+.+.     ..   +-..+.+|.|+|.+ ..+++.+.||+|+.-
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~----Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGL----WNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEE----EecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            677899999944  47888888999999    77742222     11   22246889999976 577788899999999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      |.++.....+....   .......++.+..+...++.+..-|...+||++..     ++....+      .-+...+.++
T Consensus       263 D~~~~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~-----~s~~~~~------~lh~kKI~sv  328 (498)
T KOG4328|consen  263 DFEGNISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD-----GSEYENL------RLHKKKITSV  328 (498)
T ss_pred             eecchhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecC-----Cccchhh------hhhhccccee
Confidence            96665443332111   11123345556654433333334457888887742     2211111      2233367889


Q ss_pred             EEcCCC-cEEEEeCCCCeEEEEeCCC---CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-----
Q psy13998        205 AVSNTN-RVIVSDSNNHRVQIFDVNG---RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-----  275 (319)
Q Consensus       205 ~~~~~g-~~~v~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-----  275 (319)
                      +++|-. .++++++.++..++||...   +.-..+    ....|...+.+..|+|.|.-+++.+.|+.|++||..     
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l----st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~  404 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL----STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK  404 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehhhhcCCCCcce----ecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence            999866 6778888899999999642   210001    113456678899999997668999999999999953     


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...+..+.- ....+..-.+.-.+|+|+..+++.+..-..|-||
T Consensus       405 ~~p~~~I~H-n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~  447 (498)
T KOG4328|consen  405 DEPLGTIPH-NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVF  447 (498)
T ss_pred             CCccceeec-cCcccccccchhheeCCCccEEEEeccCcceeEE
Confidence            122222210 0011222345566899998888888776666554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=4.7e-11  Score=96.31  Aligned_cols=242  Identities=17%  Similarity=0.200  Sum_probs=134.9

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCcE-EEEcCCCCeEEEEc-CCCcEEE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSI-VVADSSNHRVQVFQ-SDGTFVG  132 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~-~~~~~~~~~i~~~~-~~~~~~~  132 (319)
                      +..+.+++||++++..+.++.|.+    +|+.+.+.+..+.   .+.+++++++|++ +++....+.+.++| .+.+.++
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsv----iD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~  114 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSV----IDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK  114 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEE----EETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEE----EECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccccccee
Confidence            345788999996555567899999    8888877766544   7899999999985 55666789999999 6777887


Q ss_pred             EecCCCccC-CCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        133 KFGSMGNKA-GQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       133 ~~~~~~~~~-~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      .+...+... ....++.++..++.... +++....++|.+.|.....     .+....      ......|....++|++
T Consensus       115 ~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-----~~~~~~------i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  115 TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-----NLKVTT------IKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS-----CEEEEE------EE--TTEEEEEE-TTS
T ss_pred             ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc-----ccceee------ecccccccccccCccc
Confidence            775432211 12245567777776664 4455667899888865320     111111      1122457889999999


Q ss_pred             cEEEE-eCCCCeEEEEeCCC-CEEEEeCC--CC------------C----------------------C--c--------
Q psy13998        211 RVIVS-DSNNHRVQIFDVNG-RVITSFGS--EG------------S----------------------E--E--------  242 (319)
Q Consensus       211 ~~~v~-~~~~~~i~~~~~~~-~~~~~~~~--~~------------~----------------------~--~--------  242 (319)
                      +++++ ....+.|.++|... +.+..+..  ..            .                      .  .        
T Consensus       184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~  263 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK  263 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred             ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence            77654 45566777777542 22222110  00            0                      0  0        


Q ss_pred             --ccccCcceEEEcCCCcEEEEe----CCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCC
Q psy13998        243 --GQLKFPRGVAVDDQGYISVGD----SGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENH  314 (319)
Q Consensus       243 --~~~~~~~~i~~~~~g~~~v~~----~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~  314 (319)
                        .....+..+..+|+++++.++    ...+.|.++|.. -+.+..+..     .....+..+.|++||+ +|++....+
T Consensus       264 ~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-----~~~~~~~h~ef~~dG~~v~vS~~~~~  338 (369)
T PF02239_consen  264 TIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-----GPGKRVVHMEFNPDGKEVWVSVWDGN  338 (369)
T ss_dssp             EEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-----HHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred             EEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-----cCCCcEeccEECCCCCEEEEEEecCC
Confidence              001123456778888655555    556899999954 345555521     1112378899999998 788887766


Q ss_pred             -eEEeC
Q psy13998        315 -RIQVF  319 (319)
Q Consensus       315 -~i~v~  319 (319)
                       .|.+|
T Consensus       339 ~~i~v~  344 (369)
T PF02239_consen  339 GAIVVY  344 (369)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence             77764

...

>KOG2110|consensus

Probab=99.45  E-value=2.9e-10  Score=86.71  Aligned_cols=229  Identities=12%  Similarity=0.176  Sum_probs=134.0

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEE
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFV  131 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~  131 (319)
                      .+..+.|..+...+..++.+|. ++    |+....+...+..    .+..+-|+..=-.++.......+++++ ..+..+
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~Gy-k~----~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDGY-KI----FSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             ceeeeeeccceeEEEccCCCce-eE----EecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceE
Confidence            3445557666667777776664 34    4443332221111    222333332211122222224567777 334444


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      -.+..+       ..+.++.+.. .+++|+-.  ..|++||++.-      +++..+...   +.+......+.++..+.
T Consensus        82 Ce~~fp-------t~IL~VrmNr-~RLvV~Le--e~IyIydI~~M------klLhTI~t~---~~n~~gl~AlS~n~~n~  142 (391)
T KOG2110|consen   82 CEIFFP-------TSILAVRMNR-KRLVVCLE--ESIYIYDIKDM------KLLHTIETT---PPNPKGLCALSPNNANC  142 (391)
T ss_pred             EEEecC-------CceEEEEEcc-ceEEEEEc--ccEEEEecccc------eeehhhhcc---CCCccceEeeccCCCCc
Confidence            433211       2334445443 34555433  33999999853      444444211   11222222333333343


Q ss_pred             EEEE--eCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEE-EEEc-CCCceEEeecccC
Q psy13998        212 VIVS--DSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI-QIFT-PDGQFLRAFGCWG  286 (319)
Q Consensus       212 ~~v~--~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i-~~~~-~~g~~~~~~~~~~  286 (319)
                      +++-  ....|.|++||. +-+.+..+      ..|.....+++|+++|.++++++..|+| ++|. ++|+.+.++..  
T Consensus       143 ylAyp~s~t~GdV~l~d~~nl~~v~~I------~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--  214 (391)
T KOG2110|consen  143 YLAYPGSTTSGDVVLFDTINLQPVNTI------NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--  214 (391)
T ss_pred             eEEecCCCCCceEEEEEcccceeeeEE------EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--
Confidence            4332  234689999995 55666666      6777788999999999999999999875 6777 78999988842  


Q ss_pred             CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        287 SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                        -.....+.+++|++++.++.+.+..++|++|
T Consensus       215 --G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiF  245 (391)
T KOG2110|consen  215 --GTYPVSIYSLSFSPDSQFLAASSNTETVHIF  245 (391)
T ss_pred             --CceeeEEEEEEECCCCCeEEEecCCCeEEEE
Confidence              1123457899999999999999999999987

>KOG0270|consensus

Probab=99.45  E-value=1.6e-11  Score=95.47  Aligned_cols=198  Identities=12%  Similarity=0.114  Sum_probs=141.0

Q ss_pred             CCcCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCC-cEEEEcCCCCeEEEEc
Q psy13998         52 PGCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDN-SIVVADSSNHRVQVFQ  125 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~  125 (319)
                      .+|.+.+..|++..+-+ ++++++.|.+|.+    ||+.+++....    -..++++.|+|.. .++++++.+++|.++|
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l----WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKL----WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEE----EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence            46777788888887544 8999999999999    99988776553    3477999999874 7899999999999999


Q ss_pred             -CC-CcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        126 -SD-GTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       126 -~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                       .+ +..-..+.       ....+..++|++ ....++++..+|.++-+|++.     .++.+...      ..|-..+.
T Consensus       316 ~R~~~~s~~~wk-------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~-----~~~~vwt~------~AHd~~IS  377 (463)
T KOG0270|consen  316 CRDPSNSGKEWK-------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN-----PGKPVWTL------KAHDDEIS  377 (463)
T ss_pred             ccCccccCceEE-------eccceEEEEecCCCceeEEEecCCceEEeeecCC-----CCCceeEE------EeccCCcc
Confidence             32 11111121       124567899998 447788889999999999875     34555555      45666788


Q ss_pred             eEEEcCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC
Q psy13998        203 YIAVSNTN-RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP  274 (319)
Q Consensus       203 ~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~  274 (319)
                      +++++..- .++++++.++.+.+|+..+...+.....   .-.+....+.+++|+- .+|+.++..+.+++||.
T Consensus       378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~---~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  378 GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH---SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             eEEecCCCCcceeeccccceEEEEeecCCCCcccccc---cccccceeecccCCCcceEEEecCccceEEEeec
Confidence            99998643 6888899999999999654322222111   1112234566777774 56777777888999994

>KOG0302|consensus

Probab=99.45  E-value=1.9e-11  Score=93.16  Aligned_cols=157  Identities=12%  Similarity=0.185  Sum_probs=110.0

Q ss_pred             CCCCceeEEEeC--CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCC
Q psy13998        143 QLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNN  219 (319)
Q Consensus       143 ~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~  219 (319)
                      |...-.+|+|+|  .|. +.++...+.|++|....      |.....-   ....+|...+-.+.++|.. .+|++++.+
T Consensus       210 hk~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~------g~W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~D  279 (440)
T KOG0302|consen  210 HKGEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPST------GSWKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCD  279 (440)
T ss_pred             cCccceeeecccccccc-cccCccccceEeeeecc------CceeecC---ccccccccchhhhccCCccCceEEeeecC
Confidence            334447888888  333 44444456788887653      2221110   1113456677789999854 788999999


Q ss_pred             CeEEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC----CCceEEeecccCCCCCCCCC
Q psy13998        220 HRVQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP----DGQFLRAFGCWGSGDGEFKG  294 (319)
Q Consensus       220 ~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~----~g~~~~~~~~~~~~~~~~~~  294 (319)
                      +.|++||.... ....+..    ..+..-++-|.|+.+-.++++++.+|.+.+||.    .++++..+      .-|...
T Consensus       280 gsIrIWDiRs~~~~~~~~~----kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f------k~Hk~p  349 (440)
T KOG0302|consen  280 GSIRIWDIRSGPKKAAVST----KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF------KYHKAP  349 (440)
T ss_pred             ceEEEEEecCCCccceeEe----eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE------EeccCC
Confidence            99999996432 1111110    345556788899888779999999999999993    46777777      668889


Q ss_pred             cceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        295 LEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       295 ~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +++|.|+|... .+++++.|+.|.+|
T Consensus       350 ItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  350 ITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             eeEEEeccccCceEEeccCCCcEEEE
Confidence            99999998754 88889999999998

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=99.44  E-value=6.9e-10  Score=83.30  Aligned_cols=245  Identities=15%  Similarity=0.213  Sum_probs=152.7

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc------c-eeeEEe---------cCceeeEEcCCCc-----
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT------N-CVFLAF---------TWPRGIAVGPDNS-----  110 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~------~-~~~~~~---------~~~~~l~~~~~g~-----  110 (319)
                      ...+..+|+|+++|.+.+||++...+...+    |+...      . .....+         ..|.++.++....     
T Consensus        19 Dp~L~N~WGia~~p~~~~WVadngT~~~Tl----Ydg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~   94 (336)
T TIGR03118        19 DPGLRNAWGLSYRPGGPFWVANTGTGTATL----YVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG   94 (336)
T ss_pred             CccccccceeEecCCCCEEEecCCcceEEe----ecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence            445789999999999999999999999999    66641      1 111222         2577887764222     


Q ss_pred             -------EEEEcCCCCeEEEEcCCCcEE----EEecCCCccCCCCCCceeEEEeC---CCeEEEEeCCCCEEEEEecCCc
Q psy13998        111 -------IVVADSSNHRVQVFQSDGTFV----GKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus       111 -------~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                             .++.++++++|.-|.+.-...    ..+.......+  ..-.++++..   ...+|+++...++|.+||-.-.
T Consensus        95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118        95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence                   355567788999998422111    11111100011  1224566653   3578999999999999987643


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEE-------------eCCCCeEEEEeCCCCEEEEeCCCCCCcc
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS-------------DSNNHRVQIFDVNGRVITSFGSEGSEEG  243 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~  243 (319)
                      .....+.+...     ..+. -..|..+.- -.+++||+             +...+.|-+||++|+.++++..    .+
T Consensus       173 ~~~~~g~F~DP-----~iPa-gyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as----~g  241 (336)
T TIGR03118       173 PPPLPGSFIDP-----ALPA-GYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS----SG  241 (336)
T ss_pred             cccCCCCccCC-----CCCC-CCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc----CC
Confidence            32222222111     0011 112333322 13455554             3445789999999999998843    45


Q ss_pred             cccCcceEEEcC------CCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccC------CcEEEEe
Q psy13998        244 QLKFPRGVAVDD------QGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSN------GNILVCD  310 (319)
Q Consensus       244 ~~~~~~~i~~~~------~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~------g~~~v~~  310 (319)
                      .++.|++|++.|      .|.++|..-.|++|..||+ +|+.+..+.............|+|++...      ..+|.++
T Consensus       242 ~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaA  321 (336)
T TIGR03118       242 RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTA  321 (336)
T ss_pred             cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEe
Confidence            688999999976      4689999999999999996 58877777543333333455788888652      2467666


Q ss_pred             CCC
Q psy13998        311 REN  313 (319)
Q Consensus       311 ~~~  313 (319)
                      +-+
T Consensus       322 Gp~  324 (336)
T TIGR03118       322 GPD  324 (336)
T ss_pred             CCC
Confidence            544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1310|consensus

Probab=99.43  E-value=6.9e-12  Score=100.23  Aligned_cols=232  Identities=13%  Similarity=0.172  Sum_probs=147.7

Q ss_pred             ccccceeeeecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-----EecCceeeEEcCC--
Q psy13998         36 LQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPD--  108 (319)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--  108 (319)
                      .....+...+.+..+..||...|.+++|+.+|.++++++.|-++.+    ||.-..+...     |...+.++.|-|.  
T Consensus        31 ~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~iv----Wd~~~~KllhsI~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   31 MGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIV----WDPFEYKLLHSISTGHTANIFSVKFVPYTN  106 (758)
T ss_pred             ccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEe----ecchhcceeeeeecccccceeEEeeeccCC
Confidence            3455566678888888999999999999999999999999999999    5554333333     4457788888874  


Q ss_pred             CcEEEEcCCCCeEEEEcCCCcEEEEe-----cCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCcee-eec
Q psy13998        109 NSIVVADSSNHRVQVFQSDGTFVGKF-----GSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVF-QSD  181 (319)
Q Consensus       109 g~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~-~~~  181 (319)
                      +++++++.+|..|++||.+...-.-.     ........|...+..|+..|++ +.|++++.||.++-+|++-... .++
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~  186 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD  186 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence            56999999999999999542110000     0000113456777889999987 8899999999999999874211 111


Q ss_pred             CceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC---------CC----------EEEEeCCCCC-
Q psy13998        182 GTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN---------GR----------VITSFGSEGS-  240 (319)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~---------~~----------~~~~~~~~~~-  240 (319)
                      +.......   .....+-...+++++|.. .+++++..+--.++||..         +.          .+..+..... 
T Consensus       187 ~~~~~~l~---ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk  263 (758)
T KOG1310|consen  187 EDCPSILV---NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK  263 (758)
T ss_pred             ccccHHHH---HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence            11110000   001222345778999866 566777777777888832         10          0111110000 


Q ss_pred             -Ccc-ccc---CcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        241 -EEG-QLK---FPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       241 -~~~-~~~---~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                       ..+ ...   ..+-+.|+|+|.-++.......|++|+.
T Consensus       264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence             000 001   1345789999975555566678999994

>KOG4227|consensus

Probab=99.43  E-value=4.8e-11  Score=91.73  Aligned_cols=260  Identities=10%  Similarity=0.043  Sum_probs=157.2

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc------ceeeE-----EecCceeeEEcCCCcEEEEcCCCC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT------NCVFL-----AFTWPRGIAVGPDNSIVVADSSNH  119 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~------~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~  119 (319)
                      ..+|+.++.+|.|+.+++++++++.|..+++    |+...      .+.+.     +-..+.+++|+..++.++++..++
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~----W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRV----WNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeee----echHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            3578999999999999999999999999999    66532      11111     234678999998888899999999


Q ss_pred             eEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce-----eeec--Cc--------
Q psy13998        120 RVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV-----FQSD--GT--------  183 (319)
Q Consensus       120 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~-----~~~~--~~--------  183 (319)
                      +|..-|...+ .+..+...    .....+.++..+|..+++++.+.++.|.+||.+...     +.+.  ++        
T Consensus       128 ~VI~HDiEt~qsi~V~~~~----~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANEN----NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             eeEeeecccceeeeeeccc----CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence            9999995444 34444221    122467899999989999999999999999986431     0000  00        


Q ss_pred             -----eeeeecccCCc-------C--------CCCCCc------eeEEEcCCCcEEEEeCCCCeEEEEeCCCCE--EEEe
Q psy13998        184 -----FVGKFGSMGNK-------A--------GQLEHP------HYIAVSNTNRVIVSDSNNHRVQIFDVNGRV--ITSF  235 (319)
Q Consensus       184 -----~~~~~~~~~~~-------~--------~~~~~~------~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~--~~~~  235 (319)
                           ++......+..       +        .....|      .+..|+|.|+.+.+-.....-..||.-.+.  +.++
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence                 00000000000       0        000000      235566666655554433333445533222  2222


Q ss_pred             CCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-C---CceEEeecc--------------cCCCCCCCCCcce
Q psy13998        236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-D---GQFLRAFGC--------------WGSGDGEFKGLEG  297 (319)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~---g~~~~~~~~--------------~~~~~~~~~~~~~  297 (319)
                      .......-....+.+++|-.+ +-+++++.+-.|++|.. .   ..-...++.              .....+|..-|+.
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence            111101111123456666544 45788888889999982 1   100111110              0112567778899


Q ss_pred             EEEccCCcEEEEeCCCCeEEeC
Q psy13998        298 VAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.|+|...++++.+-.+.+++|
T Consensus       363 VRF~~H~~~l~SSGVE~~~KlW  384 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGVENSFKLW  384 (609)
T ss_pred             eeecCCcceEeccchhhheecc
Confidence            9999999999999999999998

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.3e-09  Score=88.94  Aligned_cols=230  Identities=27%  Similarity=0.428  Sum_probs=159.5

Q ss_pred             CCcceEEcCCC-cEEEEeCCCCeEEEeccccccccceeeEE-----ecCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCC
Q psy13998         57 WPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCVFLA-----FTWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDG  128 (319)
Q Consensus        57 ~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~  128 (319)
                      .|.++.+.++| +++++......+..    .+.. ......     ...|.++++++.+. +|+.....+.|.++| ...
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~----~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~  106 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSV----IDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN  106 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeee----cccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc
Confidence            78999999998 57777766556666    5543 222221     14578999998875 899888889999999 333


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeC--CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDS--NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      +.......     +  ..|..+++++++ .+|++..  .++.+.++|..+.      +..... ..+      ..|.+++
T Consensus       107 ~~~~~~~v-----G--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~------~~~~~~-~vG------~~P~~~a  166 (381)
T COG3391         107 TVLGSIPV-----G--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN------KVTATI-PVG------NTPTGVA  166 (381)
T ss_pred             ceeeEeee-----c--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCC------eEEEEE-ecC------CCcceEE
Confidence            44444321     1  278999999977 8888888  4788998887754      333321 111      1458899


Q ss_pred             EcCCCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCC--CEEEEEcCC-CceEE
Q psy13998        206 VSNTNR-VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGN--NRIQIFTPD-GQFLR  280 (319)
Q Consensus       206 ~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~--~~i~~~~~~-g~~~~  280 (319)
                      ++|+|. +|++...++.|.++|.++..+.+ ............|..++++++|. +|++...+  +.+.+.|.. +....
T Consensus       167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             ECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            999996 88888889999999988776665 43333345566799999999986 78887766  699999954 44433


Q ss_pred             eecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEE
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQ  317 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~  317 (319)
                      ....    .... .+.+++++|+|+ .|+.....+.+.
T Consensus       246 ~~~~----~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~  278 (381)
T COG3391         246 TDLP----VGSG-APRGVAVDPAGKAAYVANSQGGTVS  278 (381)
T ss_pred             eccc----cccC-CCCceeECCCCCEEEEEecCCCeEE
Confidence            3110    2333 688999999998 566655545544

>KOG4659|consensus

Probab=99.43  E-value=1.1e-10  Score=102.26  Aligned_cols=212  Identities=26%  Similarity=0.328  Sum_probs=137.2

Q ss_pred             CCcceEEcC-CCcEEEEeCCCCeEEEeccc--cccccceeeE-----------------------EecCceeeEEcCCCc
Q psy13998         57 WPRGIAVGP-DNSIVVADSSNHRVQVCFPH--FDLKTNCVFL-----------------------AFTWPRGIAVGPDNS  110 (319)
Q Consensus        57 ~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~--~~~~~~~~~~-----------------------~~~~~~~l~~~~~g~  110 (319)
                      +-..|+++| +|.++++....+.|..+..-  -++..+-...                       .+..|.+|+++.+|.
T Consensus       408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~  487 (1899)
T KOG4659|consen  408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGN  487 (1899)
T ss_pred             ceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCc
Confidence            446799999 89999999888777663210  0111111111                       455889999999999


Q ss_pred             EEEEcCCCCeEEEEcCCCcEEEEecCCCc-------------cCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCc
Q psy13998        111 IVVADSSNHRVQVFQSDGTFVGKFGSMGN-------------KAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      +|++++  ..|++.|.+|-....+.....             ..-++..|+.++++| ++.+++.+.  +.|...+...+
T Consensus       488 lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~r  563 (1899)
T KOG4659|consen  488 LYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHR  563 (1899)
T ss_pred             EEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCcc
Confidence            999985  469999988865544433211             123457899999999 888888763  66777777666


Q ss_pred             eeeecCceeeeeccc-------CCcCCCCCCceeEEEcCCCcEEEEeCCC---CeEEEEeCCCCEEEEeCCCC-------
Q psy13998        177 VFQSDGTFVGKFGSM-------GNKAGQLEHPHYIAVSNTNRVIVSDSNN---HRVQIFDVNGRVITSFGSEG-------  239 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~v~~~~~---~~i~~~~~~~~~~~~~~~~~-------  239 (319)
                      .....|+++..-...       ......+..+..+++.++|.+|++.+..   ++|+....+|....-.+...       
T Consensus       564 V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~  643 (1899)
T KOG4659|consen  564 VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVA  643 (1899)
T ss_pred             EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccc
Confidence            555555544332111       0011223456889999999999998765   34555656663322222111       


Q ss_pred             ------------CCcccccCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998        240 ------------SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF  272 (319)
Q Consensus       240 ------------~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~  272 (319)
                                  ...++++.|.++|++|||.+++++.++-+|+..
T Consensus       644 ~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~V  688 (1899)
T KOG4659|consen  644 ACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKV  688 (1899)
T ss_pred             cCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhh
Confidence                        134577889999999999999999877655433

>KOG0307|consensus

Probab=99.43  E-value=1.4e-12  Score=112.34  Aligned_cols=229  Identities=11%  Similarity=0.130  Sum_probs=156.9

Q ss_pred             cccccCCCccchh----ccccceeeeecccCCC--------------CCcCCCCcceEEcCC-CcEEEEeCCCCeEEEec
Q psy13998         23 GIGQVGTTPRSQY----LQKRRLQFKIGSRGSE--------------PGCFTWPRGIAVGPD-NSIVVADSSNHRVQVCF   83 (319)
Q Consensus        23 ~i~~~~~~~~~~~----l~~~~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~   83 (319)
                      +-..++|.+.+..    ++.+-.++.+..|...              ..|...|.++.|++. +++++++..+|.|.+  
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i--  143 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI--  143 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE--
Confidence            3445556555554    4444555555555433              235678999999995 459999999999999  


Q ss_pred             cccccccceeeEE------ecCceeeEEcCCC-cEEEEcCCCCeEEEEcCCC-cEEEEecCCCccCCCCCCceeEEEeCC
Q psy13998         84 PHFDLKTNCVFLA------FTWPRGIAVGPDN-SIVVADSSNHRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSNT  155 (319)
Q Consensus        84 ~~~~~~~~~~~~~------~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (319)
                        ||+..-..-.+      ...+.+++|+..- +++.+++.++++.+||... +.+-.+...+    ....+..++|+|+
T Consensus       144 --WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~----~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  144 --WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP----GRMHCSVLAWHPD  217 (1049)
T ss_pred             --eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC----CccceeeeeeCCC
Confidence              88854332222      2356778887653 5788888889999999443 3443332211    1134688999997


Q ss_pred             C-eEEEEeCCC---CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeC-CC
Q psy13998        156 N-RVIVSDSNN---HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV-NG  229 (319)
Q Consensus       156 g-~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~-~~  229 (319)
                      + ..+++++++   -.|.+||++-.     ...+..+      ..|...+.+|.+++.+ +++++...|++|..|+. +|
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~a-----ssP~k~~------~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFA-----SSPLKIL------EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             CceeeeeecCCCCCceeEeeccccc-----CCchhhh------cccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            6 444444443   35889997631     1222222      4566778889998766 88999999999999996 57


Q ss_pred             CEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCCC
Q psy13998        230 RVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~g  276 (319)
                      +.+..+      ....++...+.|.|.. .++.+.+-+|+|.+|+..+
T Consensus       287 Evl~~~------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  287 EVLGEL------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             eEeeec------CCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            777777      5566788899999886 4888889999999999544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.42  E-value=4.9e-10  Score=91.08  Aligned_cols=236  Identities=17%  Similarity=0.226  Sum_probs=137.2

Q ss_pred             CCCCcceEEcCCCcEEEEeCC-----------CC-eEEEecccccccc-cee------eE-EecCceeeEEcCCCcEEEE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSS-----------NH-RVQVCFPHFDLKT-NCV------FL-AFTWPRGIAVGPDNSIVVA  114 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~-----------~~-~v~~~~~~~~~~~-~~~------~~-~~~~~~~l~~~~~g~~~~~  114 (319)
                      +..|.+|+++++|++||+...           .+ +|.+    ++-.. .+.      +. .+..|.+|++.++| +|++
T Consensus        13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~----l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~   87 (367)
T TIGR02604        13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILI----LEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA   87 (367)
T ss_pred             cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEE----EEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe
Confidence            689999999999999999742           23 7777    43321 111      11 35578999999988 8887


Q ss_pred             cCCCCeEEEE-cCCC------cEEEEecCCCcc-CCCCCCceeEEEeCCCeEEEEeCCC-------------------CE
Q psy13998        115 DSSNHRVQVF-QSDG------TFVGKFGSMGNK-AGQLEHPHYIAVSNTNRVIVSDSNN-------------------HR  167 (319)
Q Consensus       115 ~~~~~~i~~~-~~~~------~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~~~~~-------------------~~  167 (319)
                      ..  ..|..| +.++      +....+...... ..+...+..+++.|+|++|++.+..                   +.
T Consensus        88 ~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        88 TP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             CC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            53  357766 4433      221122111111 1123557899999999999987632                   34


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC--CC----------CEEEE-
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV--NG----------RVITS-  234 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~--~~----------~~~~~-  234 (319)
                      |..+++++.       ....+      ......|.+++++++|++|+++..+......+.  .+          ..... 
T Consensus       166 i~r~~pdg~-------~~e~~------a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~  232 (367)
T TIGR02604       166 LFRYNPDGG-------KLRVV------AHGFQNPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHA  232 (367)
T ss_pred             EEEEecCCC-------eEEEE------ecCcCCCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccc
Confidence            555555442       22222      223577899999999999999875544333221  01          00000 


Q ss_pred             -------eC------------CCCCCcccccCcceEEEcC--------CCcEEEEeCCCCEEEEEcC--CCceEEee-cc
Q psy13998        235 -------FG------------SEGSEEGQLKFPRGVAVDD--------QGYISVGDSGNNRIQIFTP--DGQFLRAF-GC  284 (319)
Q Consensus       235 -------~~------------~~~~~~~~~~~~~~i~~~~--------~g~~~v~~~~~~~i~~~~~--~g~~~~~~-~~  284 (319)
                             ..            ......+....|.++.+-+        .|.+++++...+.|..+..  ++..+..- ..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~  312 (367)
T TIGR02604       233 DRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPE  312 (367)
T ss_pred             cccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCc
Confidence                   00            0000011123567777763        3678898888888888874  34322211 00


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      .-........|.++.+.|||.+|+++
T Consensus       313 ~l~~~~~~~rp~dv~~~pDG~Lyv~d  338 (367)
T TIGR02604       313 FLRSNDTWFRPVNVTVGPDGALYVSD  338 (367)
T ss_pred             eEecCCCcccccceeECCCCCEEEEE
Confidence            00001123578999999999999998

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0642|consensus

Probab=99.41  E-value=7.6e-12  Score=100.03  Aligned_cols=240  Identities=11%  Similarity=0.102  Sum_probs=160.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC----------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEec-
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCF-   83 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~-   83 (319)
                      .++|..++|+|-...+.+++.+.+++.|...                .+|...|.++++.++++..++++.||+|+.|+ 
T Consensus       294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~  373 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL  373 (577)
T ss_pred             hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence            6789999999988899999988888877552                34567789999999999999999999999941 


Q ss_pred             -----ccccccc-----ceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998         84 -----PHFDLKT-----NCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  153 (319)
Q Consensus        84 -----~~~~~~~-----~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (319)
                           | +|...     +....+...++.+++++....+++++.|++++.|+..+.....+..+    .....|..+.+-
T Consensus       374 p~n~dp-~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~----~e~g~Plsvd~~  448 (577)
T KOG0642|consen  374 PPNQDP-DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEP----KEHGYPLSVDRT  448 (577)
T ss_pred             CCCCCc-ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCc----cccCCcceEeec
Confidence                 1 11110     11112455778899998877788889999999999655443333221    223456666655


Q ss_pred             CCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC-cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCC
Q psy13998        154 NTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN-KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGR  230 (319)
Q Consensus       154 ~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~  230 (319)
                      ... .+.++..   ....+.+......   .-+..+..... .........-+...|.+.+.++...++.|+++| ..+.
T Consensus       449 ss~~a~~~~s~---~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  449 SSRPAHSLASF---RFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             cchhHhhhhhc---ccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            433 2222222   1222222211100   11111111110 011223345566678888999999999999999 5777


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~  277 (319)
                      .+...      ..+....++++++|+|-++++++.++++.+|..+-+
T Consensus       523 ~l~s~------~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  523 ILHSM------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cchhe------eeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            77666      667778899999999999999999999999996543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=2.1e-10  Score=89.40  Aligned_cols=196  Identities=22%  Similarity=0.304  Sum_probs=126.1

Q ss_pred             eeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee
Q psy13998        101 RGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       101 ~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      .+..++++.. +|+++-..++|..|++.......+..+.      .....+.++..+.++++...   +.+++.+.    
T Consensus        28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~------~~~~~~~~d~~g~Lv~~~~g---~~~~~~~~----   94 (307)
T COG3386          28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG------GFSSGALIDAGGRLIACEHG---VRLLDPDT----   94 (307)
T ss_pred             cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC------CcccceeecCCCeEEEEccc---cEEEeccC----
Confidence            4455666654 8999999999999997543344443321      22355566666666665432   33344321    


Q ss_pred             ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-----------CCeEEEEeCCCCEEEEeCCCCCCcccccCc
Q psy13998        180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----------NHRVQIFDVNGRVITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (319)
                        +..+..+.... .......++...++|+|++|+++..           .+.++.+++.+...+.+      ..++..+
T Consensus        95 --~~~~t~~~~~~-~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~------~~~~~~~  165 (307)
T COG3386          95 --GGKITLLAEPE-DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL------DDDLTIP  165 (307)
T ss_pred             --CceeEEecccc-CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee------cCcEEec
Confidence              11211111110 1223467888999999999998876           25799999888777776      5567889


Q ss_pred             ceEEEcCCC-cEEEEeCCCCEEEEEcCC---CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC-eEEeC
Q psy13998        249 RGVAVDDQG-YISVGDSGNNRIQIFTPD---GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH-RIQVF  319 (319)
Q Consensus       249 ~~i~~~~~g-~~~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~-~i~v~  319 (319)
                      ++|+|+||+ .+|++++..++|+.|+.+   +..-...... ........|.+++++.+|++|++...++ .|.+|
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~  240 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF  240 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence            999999999 699999999999999854   2211110000 0022446799999999999997665554 66654

>KOG0649|consensus

Probab=99.40  E-value=4.6e-10  Score=80.99  Aligned_cols=229  Identities=13%  Similarity=0.137  Sum_probs=134.3

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--------eeE------EecCceeeEEcCCCcEEEEcCCCCeEE
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--------VFL------AFTWPRGIAVGPDNSIVVADSSNHRVQ  122 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~  122 (319)
                      .+..-+++|.+++++++..+|.|.+    +.+.+.-        ...      +-..+..+++.  ..++++++ ++.|+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav----~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~   84 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAV----LSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY   84 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEE----EEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEE
Confidence            4556688999999999999999999    6553211        100      11234667776  33444443 58888


Q ss_pred             EEc--CC-----CcEEEEecCCCcc-CCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc
Q psy13998        123 VFQ--SD-----GTFVGKFGSMGNK-AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK  194 (319)
Q Consensus       123 ~~~--~~-----~~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (319)
                      -|.  ..     .+.+.+...+... ......++++-++|..+-++.++.|+.++-||++      +|++.+.+      
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE------~G~i~r~~------  152 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE------DGRIQREY------  152 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec------CCEEEEEE------
Confidence            875  11     1222222222111 2233466889999865545555589999999998      45666666      


Q ss_pred             CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC----cccccCcceEEEcCCCcEEEEeCCCCEE
Q psy13998        195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE----EGQLKFPRGVAVDDQGYISVGDSGNNRI  269 (319)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~g~~~v~~~~~~~i  269 (319)
                      .+|.....+++.-....-+++++.||.+++||. +++.+..+......    +.-..++.+++.+.  ..++++ ..-.+
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCG-gGp~l  229 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCG-GGPKL  229 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEec-CCCce
Confidence            567778888877444455788899999999995 56666555322211    01112344555544  455554 45689


Q ss_pred             EEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        270 QIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       270 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      .+|. +..+....+.       -...+..+.|..|  ++++++..+.|
T Consensus       230 slwhLrsse~t~vfp-------ipa~v~~v~F~~d--~vl~~G~g~~v  268 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFP-------IPARVHLVDFVDD--CVLIGGEGNHV  268 (325)
T ss_pred             eEEeccCCCceEEEe-------cccceeEeeeecc--eEEEeccccce
Confidence            9999 4455555552       1223455566543  34444433333

>KOG2445|consensus

Probab=99.40  E-value=9.5e-11  Score=87.19  Aligned_cols=246  Identities=10%  Similarity=0.126  Sum_probs=158.2

Q ss_pred             hhhhhhcccccccCCCccchhccccceeeeecccCCCC------------CcCCCCcceEEcC--CCcEEEEeCCCCeEE
Q psy13998         15 LLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTWPRGIAVGP--DNSIVVADSSNHRVQ   80 (319)
Q Consensus        15 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~--~g~~~~~~~~~~~v~   80 (319)
                      .+.....+.|..+.|.+-|+.+++.+.+-++++|+...            .|-..++.|.+.+  =|+++++++.|+++.
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            33444467899999999999999999999998887322            2446788888865  488999999999999


Q ss_pred             Eeccccccccc-----e-eeE-------EecCceeeEEcCC--CcEEEEcCCCCeEEEEc-CCCcEEEEecCC-------
Q psy13998         81 VCFPHFDLKTN-----C-VFL-------AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQ-SDGTFVGKFGSM-------  137 (319)
Q Consensus        81 ~~~~~~~~~~~-----~-~~~-------~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-------  137 (319)
                      +    |.-...     + .+.       .-..+.++.|.|.  |-.+++.+.+|.+++|+ ++-..+..+...       
T Consensus        87 i----WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   87 I----WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             e----eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            9    654211     1 111       1236788999885  56888999999999998 443322222110       


Q ss_pred             CccCCCCCCceeEEEeCCC---eEEEEeCCC-----CEEEEEecCCceeeecC-ceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        138 GNKAGQLEHPHYIAVSNTN---RVIVSDSNN-----HRVQIFDVNGRVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~g---~~~~~~~~~-----~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      ..+..+.....++.+.+..   .+++.++.+     +.+++|....     .+ +...    ......+...++.+++.|
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e-----~~rKw~k----va~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE-----NGRKWLK----VAELPDHTDPIRDISWAP  233 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC-----Ccceeee----ehhcCCCCCcceeeeecc
Confidence            1111222344677777632   455555433     3666665431     11 1211    111245667788999998


Q ss_pred             C-C---cEEEEeCCCCeEEEEeCCCCE-------------EEEe--CCCCCCcccccCcceEEEcCCCcEEEEeCCCCEE
Q psy13998        209 T-N---RVIVSDSNNHRVQIFDVNGRV-------------ITSF--GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI  269 (319)
Q Consensus       209 ~-g---~~~v~~~~~~~i~~~~~~~~~-------------~~~~--~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i  269 (319)
                      + |   .++++++.+| |++|......             ...+  ........|...+..+.++-.|.++.+.+.||.|
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence            5 3   4667788888 9999854210             0000  0001114555678899999999999999999999


Q ss_pred             EEEcC
Q psy13998        270 QIFTP  274 (319)
Q Consensus       270 ~~~~~  274 (319)
                      ++|..
T Consensus       313 RLWka  317 (361)
T KOG2445|consen  313 RLWKA  317 (361)
T ss_pred             eehhh
Confidence            99983

>KOG0771|consensus

Probab=99.39  E-value=4e-11  Score=92.71  Aligned_cols=196  Identities=14%  Similarity=0.181  Sum_probs=131.3

Q ss_pred             cceEEcCCCcEEEEeCCCCeEEEeccccccccce----eeEEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEE
Q psy13998         59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC----VFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGK  133 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~  133 (319)
                      ..++++.+|..+.++..||.+|+    |+..+..    ...+...+.++.|+|||+++++-+.+ ...+|+ .+|..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv----~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRV----WEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEE----EecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence            67899999999999999999999    5532222    22355688999999999999988888 899999 56644443


Q ss_pred             ecCCCccCCCCCCceeEEEeCCC---eEEEEe--CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        134 FGSMGNKAGQLEHPHYIAVSNTN---RVIVSD--SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~g---~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      ...    .........+.|..++   .+++.+  ...+.|..+++....-  + .++...    ........+++|++++
T Consensus       223 ~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~--~-~~l~~~----~~~~~~~siSsl~VS~  291 (398)
T KOG0771|consen  223 KTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG--S-NFLRLR----KKIKRFKSISSLAVSD  291 (398)
T ss_pred             cCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc--c-cccchh----hhhhccCcceeEEEcC
Confidence            321    1111233445555544   444443  3345566665532100  0 111111    0122345678999999


Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      +|++++.++.+|.|.+++........+..    ..|...++++.|+|+.+..++-+.+.+..+...
T Consensus       292 dGkf~AlGT~dGsVai~~~~~lq~~~~vk----~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  292 DGKFLALGTMDGSVAIYDAKSLQRLQYVK----EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CCcEEEEeccCCcEEEEEeceeeeeEeeh----hhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            99999999999999999965433222211    457778999999999988888888888887774

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.38  E-value=3.4e-09  Score=88.51  Aligned_cols=233  Identities=19%  Similarity=0.385  Sum_probs=161.9

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce-eeEEec-----CceeeEE-cCCCc-EEEEcCC-CCeEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC-VFLAFT-----WPRGIAV-GPDNS-IVVADSS-NHRVQ  122 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-----~~~~l~~-~~~g~-~~~~~~~-~~~i~  122 (319)
                      .++...+..+.+.+.+..++..+.++.+.+    |+..... ....+.     ....+.. .+++. ++..... ++.+.
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKL----WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEE----EEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            456678889999999999998888999999    7776553 333222     2344555 66666 4554444 88999


Q ss_pred             EEcCCC--cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        123 VFQSDG--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       123 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      +|+...  .....+      ..+...+..+++++++..++.+.. ++.+.+|+...      +..+..+      ..+..
T Consensus       138 ~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~  199 (466)
T COG2319         138 LWDLSTPGKLIRTL------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT------GKPLSTL------AGHTD  199 (466)
T ss_pred             EEEecCCCeEEEEE------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC------CceEEee------ccCCC
Confidence            999654  555555      455567789999999987777775 99999999874      1233332      22455


Q ss_pred             CceeEEEcCCCc-EEEEeCCCCeEEEEeCC-CCEEE-EeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-
Q psy13998        200 HPHYIAVSNTNR-VIVSDSNNHRVQIFDVN-GRVIT-SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-  275 (319)
Q Consensus       200 ~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-  275 (319)
                      ...++++.|++. ++++...++.|.+|+.. +.... .+      ..+.... -..+++++.++++++.++.+++|+.. 
T Consensus       200 ~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL------SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             ceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec------CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence            678899998887 44554789999999854 44444 23      2333222 22788988888899999999999953 


Q ss_pred             Cce-EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQF-LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ... +..+      ..+...+.++.+.|++..+++++.++.+++|
T Consensus       273 ~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~  311 (466)
T COG2319         273 SSSLLRTL------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLW  311 (466)
T ss_pred             CCcEEEEE------ecCCccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            222 3333      2456778899999988877778777777776

>KOG1445|consensus

Probab=99.37  E-value=1.3e-11  Score=100.46  Aligned_cols=222  Identities=11%  Similarity=0.147  Sum_probs=140.9

Q ss_pred             CCCCeEEEeccccccccceeeE--------EecCceeeEEcC-CCcEEEEcCCCCeEEEEc--CCCcEEEEecCCCccCC
Q psy13998         74 SSNHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQ--SDGTFVGKFGSMGNKAG  142 (319)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~  142 (319)
                      +..|.|.+    |++..-+.+.        .-..+.++.|+| |...++.++.++.|.+|-  .+|-........+....
T Consensus       600 g~gG~iai----~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~  675 (1012)
T KOG1445|consen  600 GSGGVIAI----YELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI  675 (1012)
T ss_pred             CCCceEEE----EEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence            45688999    8875544432        122567788887 345677778899999998  23322211111122245


Q ss_pred             CCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCe
Q psy13998        143 QLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  221 (319)
Q Consensus       143 ~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  221 (319)
                      |...++.+.|+| ...++++.+.|.+|.+||+...      +....+      .+|...+.+++|+|+|+.+++.+.|++
T Consensus       676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~------~~~~~l------~gHtdqIf~~AWSpdGr~~AtVcKDg~  743 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANA------KLYSRL------VGHTDQIFGIAWSPDGRRIATVCKDGT  743 (1012)
T ss_pred             ccceEEEEEecchhhhHhhhhhccceeeeeehhhh------hhhhee------ccCcCceeEEEECCCCcceeeeecCce
Confidence            677889999999 5578888899999999999742      222223      567788999999999999999999999


Q ss_pred             EEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC----CEEEEEcC---CCceEEeecccCCCCCCCCC
Q psy13998        222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN----NRIQIFTP---DGQFLRAFGCWGSGDGEFKG  294 (319)
Q Consensus       222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~----~~i~~~~~---~g~~~~~~~~~~~~~~~~~~  294 (319)
                      |++|++...........+...   ..-..|.|.-+|+++++.+.+    ..|.+|+.   ++..+.+....     ....
T Consensus       744 ~rVy~Prs~e~pv~Eg~gpvg---tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD-----vaps  815 (1012)
T KOG1445|consen  744 LRVYEPRSREQPVYEGKGPVG---TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD-----VAPS  815 (1012)
T ss_pred             EEEeCCCCCCCccccCCCCcc---CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec-----ccCc
Confidence            999997543222221111111   122346677788876665543    45777873   34444433211     1111


Q ss_pred             cceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        295 LEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       295 ~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +.--.+++|.+ +++++-+|..|.+|
T Consensus       816 ~LvP~YD~Ds~~lfltGKGD~~v~~y  841 (1012)
T KOG1445|consen  816 PLVPHYDYDSNVLFLTGKGDRFVNMY  841 (1012)
T ss_pred             cccccccCCCceEEEecCCCceEEEE
Confidence            11123566765 88999999988765

>KOG1034|consensus

Probab=99.36  E-value=4.2e-12  Score=95.01  Aligned_cols=211  Identities=12%  Similarity=0.131  Sum_probs=133.9

Q ss_pred             CCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccceeeE-------EecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         52 PGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCVFL-------AFTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      .||-..+..|.+.|+. +++++++.|..|++    |++++...+.       |-..+.++.|+.+|..+++++-|..+++
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRl----wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRL----WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL  207 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEE----EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence            4566788999999954 59999999999999    9998877766       3446788999999999999999999999


Q ss_pred             EcCCCcEEE-----E--ecCCCc----------------cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee
Q psy13998        124 FQSDGTFVG-----K--FGSMGN----------------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS  180 (319)
Q Consensus       124 ~~~~~~~~~-----~--~~~~~~----------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~  180 (319)
                      |+.+-+...     .  +...+.                ...|...+.++.|.  |+++++-+.++.|..|.+.......
T Consensus       208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~  285 (385)
T KOG1034|consen  208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESI  285 (385)
T ss_pred             EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhh
Confidence            995532111     1  100000                00111112222221  5778888888999999873110000


Q ss_pred             cCceeeeecccCCcCCCCCCce------eEEEcCCCcEEEEeCCCCeEEEEeCCCCEE---EEeCCCCCCcccccCcceE
Q psy13998        181 DGTFVGKFGSMGNKAGQLEHPH------YIAVSNTNRVIVSDSNNHRVQIFDVNGRVI---TSFGSEGSEEGQLKFPRGV  251 (319)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i  251 (319)
                      . +. ..-........++..|.      -.++++-+++++.+...|.|++||.+....   .++..    ......+...
T Consensus       286 ~-~v-kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~----s~~~~tVRQ~  359 (385)
T KOG1034|consen  286 H-NV-KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH----SKSGSTVRQT  359 (385)
T ss_pred             h-cc-CCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe----ccccceeeee
Confidence            0 00 00000000011222222      256677788899999999999999753221   11110    1123457788


Q ss_pred             EEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        252 AVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       252 ~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      +|+.||.+++....++.|..||.
T Consensus       360 sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  360 SFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eecccCcEEEEEeCCCcEEEEEe
Confidence            99999999999999999999984

>KOG0644|consensus

Probab=99.35  E-value=6.7e-12  Score=105.04  Aligned_cols=241  Identities=16%  Similarity=0.218  Sum_probs=154.5

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      -||++.|+++.++..|.++++++.|..+++    |..++..+..    +-..+..++++.++.++.+++.|..|++|- +
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKi----wS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKI----WSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeee----eeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            478899999999999999999999999999    9987766655    334678889988777888889999999999 7


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee--e-----ecC-ceeee--eccc-----
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF--Q-----SDG-TFVGK--FGSM-----  191 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~--~-----~~~-~~~~~--~~~~-----  191 (319)
                      ++.++..+      .+|...+++|+|+|--    +.+.++++.+||.+-...  .     .++ .....  +...     
T Consensus       263 ~~~pvsvL------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  263 DGAPVSVL------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             CCchHHHH------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence            88888777      6788899999999843    567889999998761110  0     000 00000  0000     


Q ss_pred             -CC--cCCCCCCceeEEEcCCCcEEE-----------EeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998        192 -GN--KAGQLEHPHYIAVSNTNRVIV-----------SDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       192 -~~--~~~~~~~~~~~~~~~~g~~~v-----------~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                       +.  ..........+++...+-+|+           +.-.+.++.+|+. +|...+..      .++......+.++|-
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l------~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL------MGHSDEVYVLDVHPF  406 (1113)
T ss_pred             cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh------cccccceeeeeecCC
Confidence             00  000000001112222222222           3333445667773 56555554      455666777888886


Q ss_pred             C-cEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        257 G-YISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       257 g-~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      + ++..+.+.|+...+|| ..|..++.+.     .+ ......-+|++||.-++....-|.+.+
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~-----~g-h~kl~d~kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYF-----IG-HGKLVDGKFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeee-----cc-cceeeccccCCCCceEecCCCCCceEE
Confidence            5 5777888899999999 5777766653     12 233445567777665444444444443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=5.1e-10  Score=93.18  Aligned_cols=209  Identities=15%  Similarity=0.169  Sum_probs=122.0

Q ss_pred             CCCcceEEcCCCcEEEEeCC---CCeEEEecccccccccee--eEEec-CceeeEEcCCCcEEEE-cCCCCe--EEEEcC
Q psy13998         56 TWPRGIAVGPDNSIVVADSS---NHRVQVCFPHFDLKTNCV--FLAFT-WPRGIAVGPDNSIVVA-DSSNHR--VQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~---~~~v~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~g~~~~~-~~~~~~--i~~~~~  126 (319)
                      ..+....|+|+|+.++..+.   +..|++    |++.++..  +..+. ....++|+|||+.++. ...++.  |+++|.
T Consensus       204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i----~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        204 QPLMSPAWSPDGSKLAYVSFENKKSQLVV----HDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             CccccceEcCCCCEEEEEEecCCCcEEEE----EeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            45788999999996665432   347989    88765432  22222 3346899999975444 344554  556675


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      ++.....+.      .+.......+|+|+|+. +++...++...+|+++.     .+........    .   .  ....
T Consensus       280 ~~~~~~~lt------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~-----~~~~~~~l~~----~---~--~~~~  339 (429)
T PRK01742        280 NGGTPSQLT------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA-----SGGGASLVGG----R---G--YSAQ  339 (429)
T ss_pred             CCCCeEeec------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC-----CCCCeEEecC----C---C--CCcc
Confidence            544444442      12234567899999975 44444556566665431     1111111110    1   1  2357


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEE---cCCCceEEee
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF---TPDGQFLRAF  282 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~---~~~g~~~~~~  282 (319)
                      ++|+|+.++..+.+ .+.+||..+.....+...      . ......|+|+|++++..+.++.+.+|   +.+|+.++.+
T Consensus       340 ~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~------~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        340 ISADGKTLVMINGD-NVVKQDLTSGSTEVLSST------F-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             CCCCCCEEEEEcCC-CEEEEECCCCCeEEecCC------C-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            89999877665544 567789654333333111      1 12456799999877777666655544   4688888777


Q ss_pred             cccCCCCCCCCCcceEEEcc
Q psy13998        283 GCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~  302 (319)
                            ..+...+...+|+|
T Consensus       412 ------~~~~g~~~~p~wsp  425 (429)
T PRK01742        412 ------PGSDGQVKFPAWSP  425 (429)
T ss_pred             ------cCCCCCCCCcccCC
Confidence                  34444566677776

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.3e-09  Score=90.52  Aligned_cols=210  Identities=15%  Similarity=0.114  Sum_probs=121.0

Q ss_pred             CCcceEEcCCCcEEEEe---CCCCeEEEeccccccccceeeE--Eec-CceeeEEcCCCcEE-EEcCCC--CeEEEEcCC
Q psy13998         57 WPRGIAVGPDNSIVVAD---SSNHRVQVCFPHFDLKTNCVFL--AFT-WPRGIAVGPDNSIV-VADSSN--HRVQVFQSD  127 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~---~~~~~v~~~~~~~~~~~~~~~~--~~~-~~~~l~~~~~g~~~-~~~~~~--~~i~~~~~~  127 (319)
                      .+...+|+|||+.++..   ..+..+.+    +++.++....  .+. ....++|+|||+.+ ++...+  ..|++||.+
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i----~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVI----QTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEE----EECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            46789999999865532   23457888    7776543222  222 33567999999744 443333  369999965


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-CC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      +.....+..      .........|+|+|+.++..+. ++  .|+.+++.+.      . ...+..      ........
T Consensus       276 tg~~~~lt~------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g------~-~~~lt~------~~~~~~~~  336 (429)
T PRK03629        276 SGQIRQVTD------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG------A-PQRITW------EGSQNQDA  336 (429)
T ss_pred             CCCEEEccC------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC------C-eEEeec------CCCCccCE
Confidence            444444421      1123467899999975544333 33  5666666542      1 111110      11123457


Q ss_pred             EEcCCCcEEEEe-CC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC---EEEEEcCCCce
Q psy13998        205 AVSNTNRVIVSD-SN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN---RIQIFTPDGQF  278 (319)
Q Consensus       205 ~~~~~g~~~v~~-~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~---~i~~~~~~g~~  278 (319)
                      .++|+|+.++.. ..  ...|++||.++.....+...       .......|+|||+.++..+.++   .+++++.+|+.
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-------~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-------FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-------CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence            889999765443 32  24688899765545554211       1123467999998665555433   47888888887


Q ss_pred             EEeecccCCCCCCCCCcceEEEcc
Q psy13998        279 LRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      .+.+      ..+...+...+|+|
T Consensus       410 ~~~l------~~~~~~~~~p~Wsp  427 (429)
T PRK03629        410 KARL------PATDGQVKFPAWSP  427 (429)
T ss_pred             eEEC------ccCCCCcCCcccCC
Confidence            7776      33344455566665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.34  E-value=6.5e-10  Score=83.68  Aligned_cols=212  Identities=17%  Similarity=0.221  Sum_probs=115.7

Q ss_pred             CCcCCCCcceEEcCC-CcEEEEeCCCCeEEEeccccccccceeeEE-----ecCceeeEEcCCCcEEEEcCCCCeEEEEc
Q psy13998         52 PGCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ  125 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~  125 (319)
                      ++-...+.+|+++|+ +++|+.....+.|..    ++.+ +..+..     +..+-+|++..++.++++...++.+++++
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~e----ls~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYE----LSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEE----EETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEE----EcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            455567999999996 568888888888888    7763 344443     34678999988888888887788898887


Q ss_pred             C--CCcE-----EEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        126 S--DGTF-----VGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       126 ~--~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      .  .++.     ...+... ..........++++++.+ ++|++ ....-..+|...+............... ......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~-~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  169 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLG-FPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDL-DDDKLF  169 (248)
T ss_dssp             E----TT--EEEEEEEE----S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHH-H-HT--
T ss_pred             EeccccccchhhceEEecc-cccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeecccccc-ccccce
Confidence            3  2221     1222211 112233457899999964 55554 3333344444332100000000000000 001233


Q ss_pred             CCCceeEEEcCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCC---cccccCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998        198 LEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSE---EGQLKFPRGVAVDDQGYISVGDSGNNRIQIF  272 (319)
Q Consensus       198 ~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~  272 (319)
                      ...+.+++++|. |++|+....+..|..+|.+|+.+..+......   ...+..|-+|+++++|++|+++- -+..++|
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF  247 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence            456889999974 68999999999999999999987766433211   12456799999999999999974 5666666

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1272|consensus

Probab=99.34  E-value=3.9e-12  Score=99.42  Aligned_cols=187  Identities=10%  Similarity=0.151  Sum_probs=142.6

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      .|..+.++.+|+.++.++..|.+..+| .++++...+..       ...+.++.|..+..+|+.+ ..+.+++||-.|..
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-------~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE  202 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-------METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE  202 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-------hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE
Confidence            678899999999999999999999999 67777666632       2456777777766655544 56789999987743


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                             +..+.       .......+.|-|-..++++.+..|.+..-|. .|+.+..+      .........++.+|-
T Consensus       203 -------lHClk-------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~------~t~~G~~~vm~qNP~  262 (545)
T KOG1272|consen  203 -------LHCLK-------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI------RTGAGRTDVMKQNPY  262 (545)
T ss_pred             -------Eeehh-------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHH------HccCCccchhhcCCc
Confidence                   22221       1123455778888888999999999988885 57777666      333344566788888


Q ss_pred             CcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        257 GYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +-++-.+..+|+|.+|+++. +++..+      ..|...+.+|+++++|+++++.+.|+.++||
T Consensus       263 NaVih~GhsnGtVSlWSP~skePLvKi------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIW  320 (545)
T KOG1272|consen  263 NAVIHLGHSNGTVSLWSPNSKEPLVKI------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIW  320 (545)
T ss_pred             cceEEEcCCCceEEecCCCCcchHHHH------HhcCCCcceEEECCCCcEEeecccccceeEe
Confidence            88889999999999999764 344444      4677889999999999999999999999999

>KOG2110|consensus

Probab=99.33  E-value=1.4e-09  Score=83.02  Aligned_cols=174  Identities=12%  Similarity=0.191  Sum_probs=116.2

Q ss_pred             CCeEEEeccccccccceeeEEecCc---eeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEE
Q psy13998         76 NHRVQVCFPHFDLKTNCVFLAFTWP---RGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                      .+.+++    ++.+....+-++..|   .++.++.+ ++++.-.  ..|++||.+ =+.+..+...   +.+...+.+++
T Consensus        67 pr~Lkv----~~~Kk~~~ICe~~fpt~IL~VrmNr~-RLvV~Le--e~IyIydI~~MklLhTI~t~---~~n~~gl~AlS  136 (391)
T KOG2110|consen   67 PRKLKV----VHFKKKTTICEIFFPTSILAVRMNRK-RLVVCLE--ESIYIYDIKDMKLLHTIETT---PPNPKGLCALS  136 (391)
T ss_pred             CceEEE----EEcccCceEEEEecCCceEEEEEccc-eEEEEEc--ccEEEEecccceeehhhhcc---CCCccceEeec
Confidence            345777    676656555555544   55666543 4444432  349999944 4555555332   12223345555


Q ss_pred             EeCCCeEEEEe--CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeE-EEEe-C
Q psy13998        152 VSNTNRVIVSD--SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV-QIFD-V  227 (319)
Q Consensus       152 ~~~~g~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i-~~~~-~  227 (319)
                      +++.+.+++-.  ...|.|.+||....      +.+..+      ..|.....+++|+++|.++++++..|+| ++|. +
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl------~~v~~I------~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~  204 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINL------QPVNTI------NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP  204 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccc------eeeeEE------EecCCceeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence            55555555432  34688999998742      333333      4567778899999999999999988874 6788 6


Q ss_pred             CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998        228 NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~  275 (319)
                      +|+.+.+|...    .....+.+|+|++++.++.+.+..++|++|..+
T Consensus       205 ~G~kl~eFRRG----~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  205 EGQKLYEFRRG----TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CccEeeeeeCC----ceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            88888888422    123457899999999999999999999999843

>KOG1007|consensus

Probab=99.33  E-value=7e-10  Score=82.01  Aligned_cols=241  Identities=10%  Similarity=0.115  Sum_probs=153.2

Q ss_pred             cCCCCcceEEcC-CCcEEEEeCC---C----CeEEEecccccccccee---------eEE-----ecCceeeEEcCCCcE
Q psy13998         54 CFTWPRGIAVGP-DNSIVVADSS---N----HRVQVCFPHFDLKTNCV---------FLA-----FTWPRGIAVGPDNSI  111 (319)
Q Consensus        54 ~~~~~~~v~~~~-~g~~~~~~~~---~----~~v~~~~~~~~~~~~~~---------~~~-----~~~~~~l~~~~~g~~  111 (319)
                      +.+.++.|+-+| +.+++.+...   +    ..+.+    |.+.....         +..     ...+.++.|.|++..
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aai----w~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAI----WQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEE----EecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            356788999998 4456666543   1    24556    55532111         112     225688999999876


Q ss_pred             EEEcCCCCeEEEEcC-CCcE-EEEecCCCccCCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEecCCceeeecCceeee
Q psy13998        112 VVADSSNHRVQVFQS-DGTF-VGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK  187 (319)
Q Consensus       112 ~~~~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  187 (319)
                      +++-. +..|.+|+. ++.. +..+....... +.....+-+++|  +|+.+.+. .++++..||.++..      ....
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e-~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~------~~~s  208 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAE-MRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMK------KNNS  208 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeeccccccc-ccceecccccCCCCccceEEEe-CCCcEEEEEccchh------hhcc
Confidence            66654 678999993 3333 44443333222 233445667777  67766654 57889999988531      1111


Q ss_pred             ecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEe
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGD  263 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~  263 (319)
                      +     ...|......+.++|+. .+++++..++.|++||..  ...+..+      .+|..++.++.|.|. .+++.++
T Consensus       209 I-----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el------~~HsHWvW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  209 I-----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL------PGHSHWVWAVRFNPEHDQLILSG  277 (370)
T ss_pred             h-----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc------CCCceEEEEEEecCccceEEEec
Confidence            1     13344556778899876 566788889999999954  3345555      678889999999987 5788999


Q ss_pred             CCCCEEEEEcCC---CceEEeec---------------------ccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEe
Q psy13998        264 SGNNRIQIFTPD---GQFLRAFG---------------------CWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQV  318 (319)
Q Consensus       264 ~~~~~i~~~~~~---g~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v  318 (319)
                      +.|.+|.++...   .+..-.+.                     .......|...+.+++|+.-.- +|++=+.||++-|
T Consensus       278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            999999888621   11000000                     0012245777899999986544 8888888998754

>KOG1517|consensus

Probab=99.33  E-value=1.2e-09  Score=94.29  Aligned_cols=239  Identities=14%  Similarity=0.251  Sum_probs=147.6

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-------CceeeEEcC--CCcEEEEcCCCCeEEEEc-
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-------WPRGIAVGP--DNSIVVADSSNHRVQVFQ-  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~--~g~~~~~~~~~~~i~~~~-  125 (319)
                      ..|..+.++|=...++++....+|++    ||.+.+..+..+.       .+..+.+-.  |..++++++.||.|++|+ 
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~v----wd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRV----WDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEE----EecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            46788889887777777777789999    7777666666443       345565543  235888999999999998 


Q ss_pred             -CCC----cEEEEecCC-CccCCCCCCceeEEEe--C-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        126 -SDG----TFVGKFGSM-GNKAGQLEHPHYIAVS--N-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       126 -~~~----~~~~~~~~~-~~~~~~~~~~~~l~~~--~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                       .++    +.+..+... +...+  ..-.++.++  . .|.+++++ .-..|++||....      .....+.     ..
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~--~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E------~~~~diP-----~~ 1206 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPG--ARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKE------QVVADIP-----YG 1206 (1387)
T ss_pred             cccccCCceeEEeeccccccCcc--CCCCCeeeehhhhCCeEEecC-CeeEEEEEecccc------eeEeecc-----cC
Confidence             332    222222211 11011  111224443  3 45666654 4788999998753      2222221     11


Q ss_pred             CCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCC----CEEEEeCCCCCCcccccC--cceEEEcCCCc-EEEEeCCCCE
Q psy13998        197 QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNG----RVITSFGSEGSEEGQLKF--PRGVAVDDQGY-ISVGDSGNNR  268 (319)
Q Consensus       197 ~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~i~~~~~g~-~~v~~~~~~~  268 (319)
                      ....++.+.-+ ..|++++++..||.|++||..-    ..+...      ..|...  +..+.+.+.|. -+|+++.+|.
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY------REHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCccccceee------cccCCcccceeEEeecCCCcceeeeccCCe
Confidence            22345555554 3579999999999999999532    122222      222223  67788888774 5899999999


Q ss_pred             EEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        269 IQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       269 i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |++||........+.............++|.++++..++++++. +.|+||
T Consensus      1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            99999655322222110000001124788999999899999988 889887

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=8e-09  Score=84.33  Aligned_cols=204  Identities=28%  Similarity=0.423  Sum_probs=144.7

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEE---ecCceeeEEcCCC-cEEEEcC--CCCeEEEEc-CC
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLA---FTWPRGIAVGPDN-SIVVADS--SNHRVQVFQ-SD  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~g-~~~~~~~--~~~~i~~~~-~~  127 (319)
                      ..|.++++++.++ .|+....++.|.+    ++..+......   -..|.++++++++ .+|++..  .++.+.++| ..
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~v----id~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t  149 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSV----IDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT  149 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEE----EcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence            6788999999877 8888888899999    77655444442   2388999999998 6899888  478999999 45


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      ++...... .+      ..|.+++++|+|+ +|++...++.+.++|..+.....        ............|..+++
T Consensus       150 ~~~~~~~~-vG------~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--------~~~~~~~~~~~~P~~i~v  214 (381)
T COG3391         150 NKVTATIP-VG------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--------GSVGSLVGVGTGPAGIAV  214 (381)
T ss_pred             CeEEEEEe-cC------CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--------cccccccccCCCCceEEE
Confidence            55555532 11      2458999999986 88888889999999977642221        111112334567899999


Q ss_pred             cCCCc-EEEEeCCC--CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCceEEe
Q psy13998        207 SNTNR-VIVSDSNN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQFLRA  281 (319)
Q Consensus       207 ~~~g~-~~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~~~~  281 (319)
                      +++|. .|++...+  +.+.+.|.....+......   .+.. .|.++.++|+|. +|++....+.+.+.|. .......
T Consensus       215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc---cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            99996 67777665  6899999655444333111   2334 688999999986 6666677789999994 4455444


Q ss_pred             e
Q psy13998        282 F  282 (319)
Q Consensus       282 ~  282 (319)
                      +
T Consensus       291 ~  291 (381)
T COG3391         291 G  291 (381)
T ss_pred             e
Confidence            3

>KOG0302|consensus

Probab=99.32  E-value=6.8e-10  Score=84.96  Aligned_cols=239  Identities=15%  Similarity=0.157  Sum_probs=151.1

Q ss_pred             CCcCCCCcceEEcCCCc--EEEEeCCCCeEEEeccccccccceee-------E-------------EecCceeeEEcCC-
Q psy13998         52 PGCFTWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFDLKTNCVF-------L-------------AFTWPRGIAVGPD-  108 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~~~~~~~~-------~-------------~~~~~~~l~~~~~-  108 (319)
                      .+|...+..+..++-|+  +.++-+..|+|.+    |++...-..       .             +...-.+|.|+|- 
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~V----w~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQV----WDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEE----EEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            34556667777777554  5666678899999    665321100       0             1123367888873 


Q ss_pred             -CcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCcee
Q psy13998        109 -NSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFV  185 (319)
Q Consensus       109 -g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  185 (319)
                       |. ++++.-.+.|++|.+ +|....  .. ....+|...+.+|.++|. ..+|++++.|+.|++||++...-.   ..+
T Consensus       224 ~g~-LlsGDc~~~I~lw~~~~g~W~v--d~-~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~---~~~  296 (440)
T KOG0302|consen  224 TGR-LLSGDCVKGIHLWEPSTGSWKV--DQ-RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK---AAV  296 (440)
T ss_pred             ccc-cccCccccceEeeeeccCceee--cC-ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc---cee
Confidence             33 344433467999983 443221  11 111457788899999994 588999999999999998753110   111


Q ss_pred             eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC----CCEEEEeCCCCCCcccccCcceEEEcCCC-cEE
Q psy13998        186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN----GRVITSFGSEGSEEGQLKFPRGVAVDDQG-YIS  260 (319)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~  260 (319)
                      ..       ..+...++-|.++..-.+++++..+|.+.+||..    ++.+..+      .-|...+++|.|+|.. ..+
T Consensus       297 ~~-------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f------k~Hk~pItsieW~p~e~s~i  363 (440)
T KOG0302|consen  297 ST-------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF------KYHKAPITSIEWHPHEDSVI  363 (440)
T ss_pred             Ee-------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE------EeccCCeeEEEeccccCceE
Confidence            11       2344566778888766789999999999999964    4566666      5677789999999874 588


Q ss_pred             EEeCCCCEEEEEcCCCc----eE--EeecccCCCC-------CCCCCcceEEEccCCc-EEEEeCCCC
Q psy13998        261 VGDSGNNRIQIFTPDGQ----FL--RAFGCWGSGD-------GEFKGLEGVAVMSNGN-ILVCDRENH  314 (319)
Q Consensus       261 v~~~~~~~i~~~~~~g~----~~--~~~~~~~~~~-------~~~~~~~~l~~~~~g~-~~v~~~~~~  314 (319)
                      ++++.|+.|.+||..-+    ..  .........+       .....+..+.|.++-. ++++.+.+|
T Consensus       364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            88889999999993210    00  0000000001       1123456678887644 777777776

>KOG1963|consensus

Probab=99.32  E-value=1.3e-09  Score=92.06  Aligned_cols=285  Identities=11%  Similarity=0.101  Sum_probs=169.0

Q ss_pred             ccccCCCccchhccccceeeeecccCCCC------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         24 IGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        24 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      +.+.++||++++++.+..++++-.|....            -|...|.+++|+++|.++++++..+-+.+    |.+.++
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~----Wq~~T~  283 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL----WQLETG  283 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE----EeecCC
Confidence            67889999999999998888877775443            13468999999999999999999999999    998877


Q ss_pred             eeeE--Eec-CceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCcc-----CCCCCCceeEEEeCCCeEEEEe
Q psy13998         92 CVFL--AFT-WPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNK-----AGQLEHPHYIAVSNTNRVIVSD  162 (319)
Q Consensus        92 ~~~~--~~~-~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~g~~~~~~  162 (319)
                      +...  .+. .+..+.++||+.++.....|+.|.+... +-.....+......     .....-+..++++|.-+..+..
T Consensus       284 ~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln  363 (792)
T KOG1963|consen  284 KKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN  363 (792)
T ss_pred             CcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence            6322  333 4478999999999988888999999874 33322222221111     1223456788999966667777


Q ss_pred             CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC--------C--CCeEEEEeCCC--C
Q psy13998        163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS--------N--NHRVQIFDVNG--R  230 (319)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------~--~~~i~~~~~~~--~  230 (319)
                      +..+.|..||+........-+....-...+.. ........++.+..|..+.+..        .  ...++.|..++  +
T Consensus       364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~-n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k  442 (792)
T KOG1963|consen  364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV-NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK  442 (792)
T ss_pred             CCCceEEEEeccccceeeeEEEEeecccCCcc-eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence            88899999998653211100111110011100 1111233444454565555432        1  22445555322  1


Q ss_pred             ---EEEEeCCCCCCcccccCcceEE-EcCCC-cEEEEeCCCCEEEEEcCCC-ceEEeec----ccCCCCCCCCCcceEEE
Q psy13998        231 ---VITSFGSEGSEEGQLKFPRGVA-VDDQG-YISVGDSGNNRIQIFTPDG-QFLRAFG----CWGSGDGEFKGLEGVAV  300 (319)
Q Consensus       231 ---~~~~~~~~~~~~~~~~~~~~i~-~~~~g-~~~v~~~~~~~i~~~~~~g-~~~~~~~----~~~~~~~~~~~~~~l~~  300 (319)
                         +...+.     ..|.......+ ..+.. ..+++.+.++.+++|-.++ +.+....    ......-+...+.+++|
T Consensus       443 t~~L~T~I~-----~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f  517 (792)
T KOG1963|consen  443 TFILNTKIN-----NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF  517 (792)
T ss_pred             eeEEEEEEe-----cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence               111111     11211122222 33332 3788888999999997421 1111000    00000124567888999


Q ss_pred             ccCCcEEEEeCCCCeEEeC
Q psy13998        301 MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       301 ~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.||.+++++ .++.|.+|
T Consensus       518 s~dGslla~s-~~~~Itiw  535 (792)
T KOG1963|consen  518 SQDGSLLAVS-FDDTITIW  535 (792)
T ss_pred             cCCCcEEEEe-cCCEEEEe
Confidence            9999877765 55678887

>KOG2321|consensus

Probab=99.32  E-value=6.4e-10  Score=89.68  Aligned_cols=192  Identities=10%  Similarity=0.220  Sum_probs=128.5

Q ss_pred             eeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998        101 RGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus       101 ~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      .+|+++.-. .+|++++. ..|+.++ ..|..+.-+..      ....++.+.+++-..++++++.++.|..||++.+  
T Consensus       137 RDm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k--  207 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFET------DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK--  207 (703)
T ss_pred             ccccccCCCccEEEeecC-cceEEEEcccccccccccc------ccccceeeeecCccceEEecccCceEEEecchhh--
Confidence            567776443 57776654 4799999 67887776643      2345688888988889999999999999999864  


Q ss_pred             eecCceeeeecccCCc-----CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEE
Q psy13998        179 QSDGTFVGKFGSMGNK-----AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVA  252 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~  252 (319)
                          ..+..+......     ......++++.|+.+|--+.++..+|.+++||.. .+.+..-.     ......+..+.
T Consensus       208 ----srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-----h~~e~pi~~l~  278 (703)
T KOG2321|consen  208 ----SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-----HGYELPIKKLD  278 (703)
T ss_pred             ----hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-----cCCccceeeec
Confidence                222222211111     1223457889999888888999999999999964 33332221     22223355666


Q ss_pred             EcCC--CcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        253 VDDQ--GYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       253 ~~~~--g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      |.+.  +..+++ .....+.+|+. +|+....+       .....++.+++-|++-+++++-.+..+..
T Consensus       279 ~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asi-------Ept~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  279 WQDTDQQNKVVS-MDKRILKIWDECTGKPMASI-------EPTSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             ccccCCCceEEe-cchHHhhhcccccCCceeec-------cccCCcCceeeecCCceEEEecCCCccee
Confidence            6544  234444 45578899994 68877776       23345889999999888888877765543

>KOG1188|consensus

Probab=99.31  E-value=2.7e-10  Score=85.98  Aligned_cols=249  Identities=11%  Similarity=0.146  Sum_probs=146.8

Q ss_pred             CCCCcCCCCcceEEcC--CCcEEEEeCCCCeEEEeccccccccceeeEEec---Cc--eeeEEcC--CCcEEEEcCC---
Q psy13998         50 SEPGCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WP--RGIAVGP--DNSIVVADSS---  117 (319)
Q Consensus        50 ~~~~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~--~~l~~~~--~g~~~~~~~~---  117 (319)
                      ...++-....++.|..  ..+.+.+++.||+|+.    ||+.+......+.   .+  ..+.++.  .++++.++..   
T Consensus        65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~----wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~  140 (376)
T KOG1188|consen   65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRL----WDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR  140 (376)
T ss_pred             eecCCCCcccceEEecCCCCCeeEEeccCCeEEE----EEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence            3445556667888866  4568899999999999    8887665544221   22  2334443  5667777653   


Q ss_pred             -CCeEEEEc-CCCcE-EEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        118 -NHRVQVFQ-SDGTF-VGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       118 -~~~i~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                       +..+++|| ...+. +..+.     ..|...++.+.|+| +.+++++++.||-|-+||.....  .+..++..      
T Consensus       141 s~A~v~lwDvR~~qq~l~~~~-----eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~--EeDaL~~v------  207 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQLLRQLN-----ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN--EEDALLHV------  207 (376)
T ss_pred             CceEEEEEEeccccchhhhhh-----hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc--chhhHHHh------
Confidence             45799999 33333 44443     56778999999999 55999999999999999987531  11112211      


Q ss_pred             cCCCCCCceeEEEcCCC--cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcc------cccCcceEEEcCCCcEEEEeC
Q psy13998        194 KAGQLEHPHYIAVSNTN--RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEG------QLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g--~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~g~~~v~~~  264 (319)
                       ..+...+..+.|..++  +++.... .....+|+. ++.....+..+.....      ...+........++..++.++
T Consensus       208 -iN~~sSI~~igw~~~~ykrI~clTH-~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g  285 (376)
T KOG1188|consen  208 -INHGSSIHLIGWLSKKYKRIMCLTH-METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG  285 (376)
T ss_pred             -hcccceeeeeeeecCCcceEEEEEc-cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence             2233456778888777  5555444 556778874 4443333321111000      001111111112334444433


Q ss_pred             C-C--CEEEEEc--CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        265 G-N--NRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       265 ~-~--~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      . .  +++..+.  ..+..+.......  .++..-++++.|+..+.++.+++.||.+.+|
T Consensus       286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~--g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  286 TDSNKGTIFPLVDTSSGSLLTEPAILQ--GGHEEIVRDILFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             cccCceeEEEeeecccccccCcccccc--CCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence            3 3  3444444  2333322221110  2355668889998888899999999999998

>KOG4497|consensus

Probab=99.31  E-value=3.3e-09  Score=80.00  Aligned_cols=292  Identities=14%  Similarity=0.118  Sum_probs=170.2

Q ss_pred             hccchhhhhhhhhh-cccccccCCCccchhcccccee-eeecccCCC--------CCcCCCCcceEEcCCCc-EEEEeCC
Q psy13998          7 AKNINSCFLLQTLL-VSGIGQVGTTPRSQYLQKRRLQ-FKIGSRGSE--------PGCFTWPRGIAVGPDNS-IVVADSS   75 (319)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~~--------~~~~~~~~~v~~~~~g~-~~~~~~~   75 (319)
                      .+|..+.++++.+. .+.|..+.++.+..+..-.... ..+..|...        .........+.++|+|+ ++.+...
T Consensus        33 iRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF  112 (447)
T KOG4497|consen   33 IRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEF  112 (447)
T ss_pred             EeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecc
Confidence            34566666666666 6777788887776654433222 133333221        12235668899999996 6777777


Q ss_pred             CCeEEEeccccccccceeeE-E--ecCceeeEEcCCCcEEEEcCC-C-------------------------CeEEEEcC
Q psy13998         76 NHRVQVCFPHFDLKTNCVFL-A--FTWPRGIAVGPDNSIVVADSS-N-------------------------HRVQVFQS  126 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~g~~~~~~~~-~-------------------------~~i~~~~~  126 (319)
                      +-+|.+    |++.+..... .  .....+++|+++|+.....++ |                         -+=..|.+
T Consensus       113 ~lriTV----WSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP  188 (447)
T KOG4497|consen  113 DLRITV----WSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP  188 (447)
T ss_pred             eeEEEE----EEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence            889999    8886544332 1  124578999999885443321 1                         11123556


Q ss_pred             CCcEEEEecCCCccC----CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce-----e------ee-----------
Q psy13998        127 DGTFVGKFGSMGNKA----GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV-----F------QS-----------  180 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~-----~------~~-----------  180 (319)
                      +|..+..+...-...    ...-.+..++++|.++++..++.|+.+++.+--+-.     .      ++           
T Consensus       189 dg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  189 DGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS  268 (447)
T ss_pred             CCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence            666555443211000    001234567888988999999999887765532100     0      00           


Q ss_pred             ----cCceee----------------------------eecccCCcCCCCCCceeEEEcCCCcEEEEeC--CCCeEEEEe
Q psy13998        181 ----DGTFVG----------------------------KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS--NNHRVQIFD  226 (319)
Q Consensus       181 ----~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--~~~~i~~~~  226 (319)
                          ....+.                            ........+.......-+++++|..+..+-.  .-+.+.+||
T Consensus       269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wd  348 (447)
T KOG4497|consen  269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWD  348 (447)
T ss_pred             hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEe
Confidence                000000                            0000000011122334588999876665543  346899999


Q ss_pred             CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcE
Q psy13998        227 VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNI  306 (319)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~  306 (319)
                      .....+..+      ..+...+....++|...-++...+..+++.|.+.|......      +.....+..+.+..+|..
T Consensus       349 lq~l~l~av------LiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v------P~~GF~i~~l~W~~~g~~  416 (447)
T KOG4497|consen  349 LQNLKLHAV------LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV------PKKGFNIQKLQWLQPGEF  416 (447)
T ss_pred             chhhhhhhh------hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec------CCCCceeeeEEecCCCcE
Confidence            876544443      33445678889999865556666678899999998654444      333357889999988887


Q ss_pred             EEEeCCCC
Q psy13998        307 LVCDRENH  314 (319)
Q Consensus       307 ~v~~~~~~  314 (319)
                      ++..+.|.
T Consensus       417 i~l~~kDa  424 (447)
T KOG4497|consen  417 IVLCGKDA  424 (447)
T ss_pred             EEEEcCCc
Confidence            77666664

>KOG1963|consensus

Probab=99.31  E-value=2.7e-09  Score=90.15  Aligned_cols=251  Identities=9%  Similarity=0.056  Sum_probs=153.2

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEecccc-cccc--ceeeE-EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF-DLKT--NCVFL-AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DG  128 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~-~~~~--~~~~~-~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~  128 (319)
                      |.....+.+++|++++++++..+|+|.+|.... +..+  ...++ |...+.+++|+++|..+++++..+.+.+|.. ++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence            444578899999999999999999999954311 0111  11111 4558899999999999999999999999994 33


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc--CCcCCCCCCceeEEE
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM--GNKAGQLEHPHYIAV  206 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  206 (319)
                      + .+.+.      .-...+.++.++||+.+|.....|+.|.+.........   ..+..+...  ........-++++++
T Consensus       284 ~-kqfLP------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k---~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  284 K-KQFLP------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK---STISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             C-ccccc------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh---hhccCccCCCccccccccccceeEEE
Confidence            3 22222      12245688999999999999999999998876432110   011111100  001123445678999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCC----CCCc-ccccCcceEEEcCCCcEEEEeC--------C--CCEEE
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSE----GSEE-GQLKFPRGVAVDDQGYISVGDS--------G--NNRIQ  270 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~----~~~~-~~~~~~~~i~~~~~g~~~v~~~--------~--~~~i~  270 (319)
                      +|.-+..+-....+.|..||+ +...+..+...    .... .....++.++.+..|.+.++..        .  ...++
T Consensus       354 dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  354 DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence            996667777778999999995 33333332111    1111 2223345666666677666542        1  34566


Q ss_pred             EEcCCCce-----EEeecccCCCCCCCCC-cceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        271 IFTPDGQF-----LRAFGCWGSGDGEFKG-LEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       271 ~~~~~g~~-----~~~~~~~~~~~~~~~~-~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      .|-.++..     ...+.     ..|... +..+...+... ..++.+.|+.+++|
T Consensus       434 FW~~n~~~kt~~L~T~I~-----~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW  484 (792)
T KOG1963|consen  434 FWQYNPNSKTFILNTKIN-----NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW  484 (792)
T ss_pred             EEEEcCCcceeEEEEEEe-----cCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence            77643321     12221     223333 33333444444 88999999999998

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.30  E-value=3.2e-08  Score=78.42  Aligned_cols=104  Identities=16%  Similarity=0.201  Sum_probs=76.5

Q ss_pred             cEEEEeCC----CCeEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcC---------CCCeEEEEc-CCCc
Q psy13998         68 SIVVADSS----NHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADS---------SNHRVQVFQ-SDGT  129 (319)
Q Consensus        68 ~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~---------~~~~i~~~~-~~~~  129 (319)
                      +.|+.+..    .++|.+    +|..+.+.+..+.   .|+++ ++|+|+ +|++.+         .+..|.+|| .+.+
T Consensus        14 ~v~V~d~~~~~~~~~v~V----iD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        14 RVYVLDPGHFAATTQVYT----IDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             EEEEECCcccccCceEEE----EECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            46777665    388999    8887776665443   77886 999985 788877         788999999 7888


Q ss_pred             EEEEecCCCccC-CCCCCceeEEEeCCCeE-EEEeCC-CCEEEEEecCCc
Q psy13998        130 FVGKFGSMGNKA-GQLEHPHYIAVSNTNRV-IVSDSN-NHRVQIFDVNGR  176 (319)
Q Consensus       130 ~~~~~~~~~~~~-~~~~~~~~l~~~~~g~~-~~~~~~-~~~i~~~~~~~~  176 (319)
                      .+.++..+..+. .....+..++++++|++ |++... ++.+.++|+..+
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence            888886543311 12346678999999965 556645 899999999854

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1587|consensus

Probab=99.29  E-value=9.6e-10  Score=91.78  Aligned_cols=244  Identities=10%  Similarity=0.078  Sum_probs=150.7

Q ss_pred             CCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceee--E--------EecCceeeEEcCCC--cEEEEcCCCCeEE
Q psy13998         56 TWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVF--L--------AFTWPRGIAVGPDN--SIVVADSSNHRVQ  122 (319)
Q Consensus        56 ~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~--~--------~~~~~~~l~~~~~g--~~~~~~~~~~~i~  122 (319)
                      ..+.++.|+| +..+++.+..+|.|.+    ||....+..  .        +-.....+.+..+-  .-+++.+.||.|.
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~l----WD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~  318 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVL----WDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC  318 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEE----EEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence            5667899998 5678999999999999    888655442  1        22234556665432  3467777799999


Q ss_pred             EEcCCCcEE--EEe-----cCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc
Q psy13998        123 VFQSDGTFV--GKF-----GSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK  194 (319)
Q Consensus       123 ~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (319)
                      .|+.+.-..  ...     ...+...........++|.+ +-+.|+.++..|.|..-+..+......    ..+......
T Consensus       319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~----~~~~~~~~~  394 (555)
T KOG1587|consen  319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE----VSYKGHSTF  394 (555)
T ss_pred             eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc----ccccccccc
Confidence            997432111  111     00011112234557788887 457899999999998755544321110    111111111


Q ss_pred             CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEE
Q psy13998        195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQI  271 (319)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~  271 (319)
                      ..+......+..+|=+..++....|-.+++|...  ...+..+      ........+++|+|.. .+|++...+|.|.+
T Consensus       395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~------~~~~~~v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh------hhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence            2334455667777766444444448999999854  3333333      3334457899999985 58889899999999


Q ss_pred             EcCCC---ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        272 FTPDG---QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       272 ~~~~g---~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ||..-   ..+...      .........+.++++|++++.|...|.+.+|
T Consensus       469 WDLl~~~~~Pv~s~------~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  469 WDLLQDDEEPVLSQ------KVCSPALTRVRWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             hhhhccccCCcccc------cccccccceeecCCCCcEEEEecCCCcEEEE
Confidence            99422   222222      1122344566778889999999999988875

>KOG3881|consensus

Probab=99.29  E-value=2e-09  Score=82.77  Aligned_cols=234  Identities=12%  Similarity=0.178  Sum_probs=147.0

Q ss_pred             CcCCCCcceEEcCCCc--EEEEeCCCCeEEEeccccccccceeeEEe----------cCceeeEEcCCCcEEEEcCCCCe
Q psy13998         53 GCFTWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFDLKTNCVFLAF----------TWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      .....+.+++|..+++  +++..+.+..+..    +.....+.....          ..+.+++.. ++. ++++..+|.
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~----~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~-Litc~~sG~  126 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPK----FVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGT-LITCVSSGN  126 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCccccc----ccccCCccccccccccccccccccccchhhc-CCE-EEEEecCCc
Confidence            3456777888876554  6666656666665    444333332221          122333332 444 444456778


Q ss_pred             EEEEcCC-----CcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCC--CEEEEEecCCceeeecCceeeeecccC
Q psy13998        121 VQVFQSD-----GTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMG  192 (319)
Q Consensus       121 i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~  192 (319)
                      +.+|...     ......+...       .....+.-++.. .++++++..  +.+.+||+.+.        ...+....
T Consensus       127 l~~~~~k~~d~hss~l~~la~g-------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--------~qiw~aKN  191 (412)
T KOG3881|consen  127 LQVRHDKSGDLHSSKLIKLATG-------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--------KQIWSAKN  191 (412)
T ss_pred             EEEEeccCCccccccceeeecC-------CceeeeccCCCCCceEecCchhcccceeeeecccc--------eeeeeccC
Confidence            8888732     2222222111       222344444433 455557777  78999998852        11121111


Q ss_pred             CcCC-----CCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEe
Q psy13998        193 NKAG-----QLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGD  263 (319)
Q Consensus       193 ~~~~-----~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~  263 (319)
                      ....     -...++++.|-+.  .+.|+++..-+.+++||+.  -+++..+      .-..+.+.++...|+|++++++
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f------d~~E~~is~~~l~p~gn~Iy~g  265 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF------DFLENPISSTGLTPSGNFIYTG  265 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe------ccccCcceeeeecCCCcEEEEe
Confidence            1111     1234567778766  6889999999999999964  3455555      3334567889999999988888


Q ss_pred             CCCCEEEEEcCC-CceEEe-ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        264 SGNNRIQIFTPD-GQFLRA-FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       264 ~~~~~i~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...+.+..||.. ++.+.. +      .+....+++|..+|...++++++-|+.+|||
T Consensus       266 n~~g~l~~FD~r~~kl~g~~~------kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  266 NTKGQLAKFDLRGGKLLGCGL------KGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             cccchhheecccCceeecccc------CCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            889999999954 454444 3      4566789999999999999999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=6.3e-09  Score=86.99  Aligned_cols=178  Identities=13%  Similarity=0.098  Sum_probs=103.2

Q ss_pred             CceeeEEcCCCcEEEE-c--CCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEE-EEeCCC--CEEEEEe
Q psy13998         99 WPRGIAVGPDNSIVVA-D--SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNN--HRVQIFD  172 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~--~~i~~~~  172 (319)
                      .....+|+|||+.++. .  ..+..|++|+..+.....+..      ........+|+|+|+.+ ++...+  ..|+++|
T Consensus       203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  276 (435)
T PRK05137        203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN------FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD  276 (435)
T ss_pred             CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec------CCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence            4577899999974333 2  234689999954433333321      11233567899999654 454444  4577778


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE-EeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +.+...       ..+.      .+........++|+|+.++ +...  ...|++++.++...+.+..      ......
T Consensus       277 ~~~~~~-------~~Lt------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~------~~~~~~  337 (435)
T PRK05137        277 LRSGTT-------TRLT------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF------GGGRYS  337 (435)
T ss_pred             CCCCce-------EEcc------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec------CCCccc
Confidence            765321       1111      1112234578899997544 3322  3478999987765555421      111234


Q ss_pred             eEEEcCCCcEEEEeC-C--CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998        250 GVAVDDQGYISVGDS-G--NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~-~--~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v  308 (319)
                      ...++|+|+.++... .  ...|.+++.++...+.+.      . ........|+|||+.++
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt------~-~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT------S-GFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc------C-CCCCCCCeECCCCCEEE
Confidence            578999997554432 2  247888997665555442      1 12356789999998443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.29  E-value=2e-09  Score=86.01  Aligned_cols=254  Identities=21%  Similarity=0.254  Sum_probs=134.4

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeEEe--------cCceeeEEcCC----CcEEEEcCCC--
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFLAF--------TWPRGIAVGPD----NSIVVADSSN--  118 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~--------~~~~~l~~~~~----g~~~~~~~~~--  118 (319)
                      |+.|++|++.|+|++|++.. .|+|++    ++.....  .+...        ....+++++|+    +.+|++-+..  
T Consensus         1 L~~P~~~a~~pdG~l~v~e~-~G~i~~----~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~   75 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAER-SGRIWV----VDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE   75 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEET-TTEEEE----EETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred             CCCceEEEEeCCCcEEEEeC-CceEEE----EeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence            46799999999999999877 899999    6632121  22222        24588999994    6677765522  


Q ss_pred             ------CeEEEEcCCCc--EE---EEe-cCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEEEEec
Q psy13998        119 ------HRVQVFQSDGT--FV---GKF-GSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDV  173 (319)
Q Consensus       119 ------~~i~~~~~~~~--~~---~~~-~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~~~~~  173 (319)
                            .+|..|..+..  ..   ..+ ..........+....|+|.|+|.+|++.+.             .++|..++.
T Consensus        76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~  155 (331)
T PF07995_consen   76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP  155 (331)
T ss_dssp             SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred             CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc
Confidence                  35666662211  11   111 110110123345577999999999998542             256666666


Q ss_pred             CCceeeecCceeeeeccc-CCcCCCCCCceeEEEcCC-CcEEEEeCCCC---eEEEEeCCCCE---EE---------EeC
Q psy13998        174 NGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVSNT-NRVIVSDSNNH---RVQIFDVNGRV---IT---------SFG  236 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~---~i~~~~~~~~~---~~---------~~~  236 (319)
                      ++.....+. +...-... ..-...+..|.+++++|. |++|+++....   .|.+....+..   ..         .+.
T Consensus       156 dG~~p~dnP-~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  156 DGSIPADNP-FVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             TSSB-TTST-TTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             cCcCCCCCc-cccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence            553211000 00000000 000123567899999998 99999876432   34333221100   00         000


Q ss_pred             CCC----C-----CcccccCcceEEEcC-------CCcEEEEeCCCCEEEEEcCC--CceEEeecccCCCCCCCCCcceE
Q psy13998        237 SEG----S-----EEGQLKFPRGVAVDD-------QGYISVGDSGNNRIQIFTPD--GQFLRAFGCWGSGDGEFKGLEGV  298 (319)
Q Consensus       237 ~~~----~-----~~~~~~~~~~i~~~~-------~g~~~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~~~~~l  298 (319)
                      ...    .     .-.+...|.++.+-+       .|.+++++...++|..+..+  ++........   .....+|.+|
T Consensus       235 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~r~~~v  311 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL---GGFGGRPRDV  311 (331)
T ss_dssp             TGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC---TTSSS-EEEE
T ss_pred             cccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc---ccCCCCceEE
Confidence            000    0     001123467777752       46789999988999988843  3322211100   2233379999


Q ss_pred             EEccCCcEEEEeCCCCeEE
Q psy13998        299 AVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       299 ~~~~~g~~~v~~~~~~~i~  317 (319)
                      ++.|||.+|+++..++.|.
T Consensus       312 ~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEETTSEEEEEE-TTTTEE
T ss_pred             EEcCCCeEEEEECCCCeEe
Confidence            9999999999999888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=6.4e-09  Score=86.85  Aligned_cols=197  Identities=14%  Similarity=0.176  Sum_probs=113.2

Q ss_pred             CCCcceEEcCCCcEEEEeC---CCCeEEEeccccccccceeeE--Eec-CceeeEEcCCCc-EEEEcCCC--CeEEEEcC
Q psy13998         56 TWPRGIAVGPDNSIVVADS---SNHRVQVCFPHFDLKTNCVFL--AFT-WPRGIAVGPDNS-IVVADSSN--HRVQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~---~~~~v~~~~~~~~~~~~~~~~--~~~-~~~~l~~~~~g~-~~~~~~~~--~~i~~~~~  126 (319)
                      ..+.+.+|+|+|+.++..+   ....|++    |++.++....  .+. .....+|+|+|+ ++++...+  ..|++|+.
T Consensus       204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~----~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        204 EPILSPAWSPDGKKLAYVSFERGRSAIYV----QDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             CccccccCCCCCCEEEEEecCCCCcEEEE----EECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            3567889999998655443   3356888    7776544322  222 224678999997 44443333  46999996


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      .+.....+..      +.......+|+|+|+.++..+ ..+  .|+++++.+.      +. ..+..    ..  .....
T Consensus       280 ~~g~~~~lt~------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g------~~-~~lt~----~g--~~~~~  340 (433)
T PRK04922        280 GSRQLTRLTN------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG------SA-ERLTF----QG--NYNAR  340 (433)
T ss_pred             CCCCeEECcc------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------Ce-EEeec----CC--CCccC
Confidence            5544444421      112235678999997555433 333  4666776542      11 11110    00  12235


Q ss_pred             EEEcCCCcEEEEe-CCC--CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC---CCCEEEEEcCCCc
Q psy13998        204 IAVSNTNRVIVSD-SNN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS---GNNRIQIFTPDGQ  277 (319)
Q Consensus       204 ~~~~~~g~~~v~~-~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~---~~~~i~~~~~~g~  277 (319)
                      .+++|+|+.++.. ..+  ..|++|+..+...+.+..     .  .......++|+|+.++..+   ....|++++.+|.
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-----~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-----G--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-----C--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            7899999765443 222  369999975544444421     1  1223568999997544332   2457888998887


Q ss_pred             eEEee
Q psy13998        278 FLRAF  282 (319)
Q Consensus       278 ~~~~~  282 (319)
                      ..+.+
T Consensus       414 ~~~~l  418 (433)
T PRK04922        414 VRQRL  418 (433)
T ss_pred             ceEEc
Confidence            76666

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.9e-08  Score=83.71  Aligned_cols=184  Identities=13%  Similarity=0.057  Sum_probs=103.3

Q ss_pred             CceeeEEcCCCcEEEE-c--CCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-EeCCC--CEEEEEe
Q psy13998         99 WPRGIAVGPDNSIVVA-D--SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNN--HRVQIFD  172 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~~~~~--~~i~~~~  172 (319)
                      .....+|+|||+.++. .  ..+..+++++..+.....+...   .   ......+|+|||+.++ +...+  ..|++||
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~---~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---P---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---C---CCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            4567899999975443 2  2345788998544333332211   1   1234679999996544 43333  3688888


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CC--CeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +++.      +.. .+.      ..........++|+|+.++..+ ..  ..|++++.++.....+..      ......
T Consensus       274 ~~tg------~~~-~lt------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~------~~~~~~  334 (429)
T PRK03629        274 LASG------QIR-QVT------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW------EGSQNQ  334 (429)
T ss_pred             CCCC------CEE-Ecc------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec------CCCCcc
Confidence            8753      211 111      1112345678999997554333 22  367777876554444421      112235


Q ss_pred             eEEEcCCCcEEEE-eCC--CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        250 GVAVDDQGYISVG-DSG--NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       250 ~i~~~~~g~~~v~-~~~--~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      ...++|||+.++. ...  ...|++|+.++...+.+..      . .......|+|||++++..+.++
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~------~-~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD------T-FLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC------C-CCCCCceECCCCCEEEEEEcCC
Confidence            6789999975544 332  2468889965544444421      1 1223567999999665555443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=5e-09  Score=87.34  Aligned_cols=202  Identities=16%  Similarity=0.122  Sum_probs=110.4

Q ss_pred             CeEEEeccccccccceee--EE-ecCceeeEEcCCCcEEEEcC---CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeE
Q psy13998         77 HRVQVCFPHFDLKTNCVF--LA-FTWPRGIAVGPDNSIVVADS---SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYI  150 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~--~~-~~~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (319)
                      ..|.+    ||.......  .. -.......|+|+|+.++..+   .+..|++||..+.....+...   .++   ...+
T Consensus       184 ~~i~i----~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---~g~---~~~~  253 (429)
T PRK01742        184 YEVRV----ADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---RGH---NGAP  253 (429)
T ss_pred             EEEEE----ECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---CCc---cCce
Confidence            57878    665433221  11 12457889999997554432   234799999543322222111   112   2457


Q ss_pred             EEeCCCeEEEE-eCCCCEE--EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE-EEEeCCCCe--EEE
Q psy13998        151 AVSNTNRVIVS-DSNNHRV--QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHR--VQI  224 (319)
Q Consensus       151 ~~~~~g~~~~~-~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~--i~~  224 (319)
                      +|+|||+.++. ...++.+  +++|+.+.      . ...+      ..+.......+++|+|+. +++...++.  |+.
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~------~-~~~l------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~  320 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGG------T-PSQL------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR  320 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCC------C-eEee------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence            99999975554 4455654  45565542      1 1122      111223456889999974 444444454  444


Q ss_pred             EeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        225 FDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      ++..+.....+..    ..     ....++|+|+.++..+.+ .+.+||.. |+.. .+.      ... ....+.|+||
T Consensus       321 ~~~~~~~~~~l~~----~~-----~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~-~lt------~~~-~~~~~~~sPd  382 (429)
T PRK01742        321 MSASGGGASLVGG----RG-----YSAQISADGKTLVMINGD-NVVKQDLTSGSTE-VLS------STF-LDESPSISPN  382 (429)
T ss_pred             EECCCCCeEEecC----CC-----CCccCCCCCCEEEEEcCC-CEEEEECCCCCeE-Eec------CCC-CCCCceECCC
Confidence            4555544433310    11     246789999876666554 56668854 4433 221      111 2356789999


Q ss_pred             CcEEEEeCCCCeEEeC
Q psy13998        304 GNILVCDRENHRIQVF  319 (319)
Q Consensus       304 g~~~v~~~~~~~i~v~  319 (319)
                      |++++..+.++.+.+|
T Consensus       383 G~~i~~~s~~g~~~~l  398 (429)
T PRK01742        383 GIMIIYSSTQGLGKVL  398 (429)
T ss_pred             CCEEEEEEcCCCceEE
Confidence            9977777666665543

>KOG1523|consensus

Probab=99.26  E-value=2.1e-09  Score=80.64  Aligned_cols=207  Identities=13%  Similarity=0.133  Sum_probs=141.2

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-------EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-  126 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-  126 (319)
                      ...+++.++++|+..++.+..++.|.+    |.........       |-..+.++.+.|..+.+++++.|..-++|.. 
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhi----y~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHI----YSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEE----EEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            356789999999999999999999999    7665444222       2336788999999989999999999999994 


Q ss_pred             CCc-EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        127 DGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       127 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      ++. -...+..    ........++.++|.++.|++++....|-++-.+++.-    =.+..    .........+.++.
T Consensus        86 ~~~~WkptlvL----lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd----WWVsK----hikkPirStv~sld  153 (361)
T KOG1523|consen   86 SGGTWKPTLVL----LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND----WWVSK----HIKKPIRSTVTSLD  153 (361)
T ss_pred             CCCeeccceeE----EEeccceeeEeecCcCceEEeccCccEEEEEEEecccc----eehhh----hhCCccccceeeee
Confidence            442 2211110    23345678999999999999999988888887664310    00000    00012234458899


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeC--CCCEEEE----------eCCC-CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDV--NGRVITS----------FGSE-GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF  272 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~--~~~~~~~----------~~~~-~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~  272 (319)
                      ++|++-++.+++.|+..++|..  .+-..+.          |+.. ........++.++.|+|+|..++=-+.|..+.+-
T Consensus       154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            9999999999999999999862  1100000          0000 0001233467889999999877777788999999


Q ss_pred             cCCCc
Q psy13998        273 TPDGQ  277 (319)
Q Consensus       273 ~~~g~  277 (319)
                      |..+.
T Consensus       234 da~~p  238 (361)
T KOG1523|consen  234 DAAGP  238 (361)
T ss_pred             ecCCC
Confidence            96654

>KOG1523|consensus

Probab=99.26  E-value=9.1e-10  Score=82.52  Aligned_cols=202  Identities=11%  Similarity=0.075  Sum_probs=136.8

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE----EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEec-
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF----VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-  173 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-  173 (319)
                      .+.+.++++++..++.+..++.|.+|...+..    ..++      ..|...++++.+.|..+.+++++.|..-++|.. 
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl------s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL------SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh------hhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            56889999999988888888899999855443    2223      456678899999999989999999999999987 


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                      ++.      +....+..    ...-....++.++|..+.|++++....|.++-.+++.-.-..... .......+.++.+
T Consensus        86 ~~~------~WkptlvL----lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi-kkPirStv~sldW  154 (361)
T KOG1523|consen   86 SGG------TWKPTLVL----LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI-KKPIRSTVTSLDW  154 (361)
T ss_pred             CCC------eeccceeE----EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh-CCccccceeeeec
Confidence            432      22111110    112234678999999999999999988888775554333221000 0122344689999


Q ss_pred             cCCCcEEEEeCCCCEEEEEcC-----CCceE-------EeecccC-CCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        254 DDQGYISVGDSGNNRIQIFTP-----DGQFL-------RAFGCWG-SGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       254 ~~~g~~~v~~~~~~~i~~~~~-----~g~~~-------~~~~~~~-~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      .|++-++++++.|+..++|+.     +-+.-       ..++... ........+.++.|+|+|..++--+.|..+.
T Consensus       155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~  231 (361)
T KOG1523|consen  155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS  231 (361)
T ss_pred             cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence            999999999999999999972     11100       0010000 0013446789999999998777666776654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=8.8e-09  Score=86.12  Aligned_cols=197  Identities=14%  Similarity=0.106  Sum_probs=116.0

Q ss_pred             CCCcceEEcCCCcEEEEeC---CCCeEEEeccccccccceeeE--Eec-CceeeEEcCCCcE-EEEcCCC--CeEEEEcC
Q psy13998         56 TWPRGIAVGPDNSIVVADS---SNHRVQVCFPHFDLKTNCVFL--AFT-WPRGIAVGPDNSI-VVADSSN--HRVQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~---~~~~v~~~~~~~~~~~~~~~~--~~~-~~~~l~~~~~g~~-~~~~~~~--~~i~~~~~  126 (319)
                      ..+...+|+|||+.++..+   .+..|++    |++.++....  ... .....+|+|+|+. +++...+  ..|+++|.
T Consensus       202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~----~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        202 SLVLTPRFSPNRQEITYMSYANGRPRVYL----LDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             CCeEeeEECCCCCEEEEEEecCCCCEEEE----EECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            4577899999998554432   3568999    8886554322  222 3356789999974 4454433  45888886


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      .+.....+..      +........++|+|+.++..+ .+  ..|+++++++..       ...+..      .......
T Consensus       278 ~~~~~~~Lt~------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-------~~~lt~------~~~~~~~  338 (435)
T PRK05137        278 RSGTTTRLTD------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-------PRRISF------GGGRYST  338 (435)
T ss_pred             CCCceEEccC------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-------eEEeec------CCCcccC
Confidence            5555454422      112335678999987554433 22  468888876531       111110      0111234


Q ss_pred             EEEcCCCcEEEEeC-C--CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-EeCCC-----CEEEEEcC
Q psy13998        204 IAVSNTNRVIVSDS-N--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GDSGN-----NRIQIFTP  274 (319)
Q Consensus       204 ~~~~~~g~~~v~~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~~~~-----~~i~~~~~  274 (319)
                      ..++|+|+.++... .  ...|.+++.++...+.+..     .  .......|+|||+.++ +....     ..|++++.
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-----~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-----G--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-----C--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            67899997654432 2  2478899987655544421     1  1245678999997543 33222     37889998


Q ss_pred             CCceEEee
Q psy13998        275 DGQFLRAF  282 (319)
Q Consensus       275 ~g~~~~~~  282 (319)
                      +|...+.+
T Consensus       412 ~g~~~~~l  419 (435)
T PRK05137        412 TGRNEREV  419 (435)
T ss_pred             CCCceEEc
Confidence            77666555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.24  E-value=2.4e-09  Score=78.55  Aligned_cols=114  Identities=22%  Similarity=0.295  Sum_probs=81.1

Q ss_pred             CceeEEEeCCCeEEEE--eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC---CCC
Q psy13998        146 HPHYIAVSNTNRVIVS--DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNH  220 (319)
Q Consensus       146 ~~~~l~~~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---~~~  220 (319)
                      .+.+++|+|+|+.++.  +.....+.+||.++       +.+..+.        ....+.+.++|+|+++++++   ..|
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-------~~i~~~~--------~~~~n~i~wsP~G~~l~~~g~~n~~G  125 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-------KKIFSFG--------TQPRNTISWSPDGRFLVLAGFGNLNG  125 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCcc-------cEeEeec--------CCCceEEEECCCCCEEEEEEccCCCc
Confidence            4799999999876543  33567899999874       3333332        12346799999998887764   246


Q ss_pred             eEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC------CCEEEEEcCCCceEEee
Q psy13998        221 RVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG------NNRIQIFTPDGQFLRAF  282 (319)
Q Consensus       221 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~------~~~i~~~~~~g~~~~~~  282 (319)
                      .|.+||.+. +.+...        .......++|+|+|+++++...      ++.+.+|+..|+.+...
T Consensus       126 ~l~~wd~~~~~~i~~~--------~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~  186 (194)
T PF08662_consen  126 DLEFWDVRKKKKISTF--------EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK  186 (194)
T ss_pred             EEEEEECCCCEEeecc--------ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence            799999764 333332        1224678999999998887753      68889999999887665

>KOG1009|consensus

Probab=99.24  E-value=2.1e-10  Score=88.44  Aligned_cols=155  Identities=14%  Similarity=0.189  Sum_probs=115.4

Q ss_pred             CceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        146 HPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       146 ~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                      .+..+.|.++.. .+++++.|..|++|.+....  +.+. ............|....+++.|+|+|.++.++..++.+.+
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~--~~~~-~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSE--PGGG-DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecC--CCCC-ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            346667777554 89999999999999775321  1111 0111111222556677899999999999999999999999


Q ss_pred             EeCC--------C-----C----EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccC
Q psy13998        225 FDVN--------G-----R----VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWG  286 (319)
Q Consensus       225 ~~~~--------~-----~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~  286 (319)
                      |-..        .     +    ..+..      .++...+..++|+++++++++++.++.+++|| ..|+.+...    
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~l------r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~----  161 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVL------RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL----  161 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEe------cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec----
Confidence            9744        1     1    01111      34566789999999999999999999999999 578888887    


Q ss_pred             CCCCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998        287 SGDGEFKGLEGVAVMSNGNILVCDRENHR  315 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~~~v~~~~~~~  315 (319)
                        ..|...+.+++|+|-++++++-+.|..
T Consensus       162 --~dh~~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  162 --DDHEHYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             --cccccccceeecchhhhhhhhhccCcc
Confidence              678889999999999888888777763

>KOG4497|consensus

Probab=99.24  E-value=4.8e-09  Score=79.18  Aligned_cols=277  Identities=13%  Similarity=0.107  Sum_probs=161.1

Q ss_pred             ccCCCccchhccccceeeeecccCCCCCc-------CCCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeEEe
Q psy13998         26 QVGTTPRSQYLQKRRLQFKIGSRGSEPGC-------FTWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFLAF   97 (319)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~   97 (319)
                      -+.|||+++++++.+.- ++-+.+...-+       ++.+..|.+..+... +.....++.|.+    |++...+..-.+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqv----wsl~Qpew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQV----WSLVQPEWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEE----EEeecceeEEEe
Confidence            45689999999887655 44444444332       367788899887664 444567889999    888765554444


Q ss_pred             c----CceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC------
Q psy13998         98 T----WPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH------  166 (319)
Q Consensus        98 ~----~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~------  166 (319)
                      +    ....+.++|+|+ ++.+..-+-+|.+|....+....+..+      ...+.+++++++|++....+...      
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP------KTNVKGYAFHPDGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc------ccCceeEEECCCCceeeeeecccHHHHHH
Confidence            3    457789999995 666666788999999665544444222      23457889999998765543211      


Q ss_pred             -------------EEEEEecCCceeeecCceeeeecccCC----cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-C
Q psy13998        167 -------------RVQIFDVNGRVFQSDGTFVGKFGSMGN----KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-N  228 (319)
Q Consensus       167 -------------~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~  228 (319)
                                   .+--.|+.|..-.++|..+......-.    .....-....++++|.++++.+++.|+.+++.+. +
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence                         011112233333445544443321100    0011123455788898999999998877766541 1


Q ss_pred             ----CCEEE---------------------------EeCCC-----------------------------CCCcccccCc
Q psy13998        229 ----GRVIT---------------------------SFGSE-----------------------------GSEEGQLKFP  248 (319)
Q Consensus       229 ----~~~~~---------------------------~~~~~-----------------------------~~~~~~~~~~  248 (319)
                          ++...                           .+...                             .........+
T Consensus       242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~  321 (447)
T KOG4497|consen  242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA  321 (447)
T ss_pred             eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence                11000                           00000                             0000111223


Q ss_pred             ceEEEcCCCcEEEEeC--CCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        249 RGVAVDDQGYISVGDS--GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~--~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .-++|++|..+.++-.  .-+.+.+||.....+..+      ..+...+....++|...-++......++.+|
T Consensus       322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~av------LiQk~piraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAV------LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             ceeeecCCceEEeeecCCCCceEEEEechhhhhhhh------hhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence            4588999866555533  236899999765544444      3456678889999876544444444456665

>KOG2139|consensus

Probab=99.24  E-value=3e-08  Score=75.89  Aligned_cols=278  Identities=11%  Similarity=-0.008  Sum_probs=157.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC---C-----cCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP---G-----CFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~-----~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      +..+..++|++.-.-++.+..+-.+..++...   .     ....+.+++|-|.+ +.++.+.. +-|.+|.-+......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN  176 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence            44567777777444455555444444443322   1     13578899999955 45555554 456773322211111


Q ss_pred             eeeE-------------EecCceeeEEcCCCcEEEEcC-CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe
Q psy13998         92 CVFL-------------AFTWPRGIAVGPDNSIVVADS-SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  157 (319)
Q Consensus        92 ~~~~-------------~~~~~~~l~~~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  157 (319)
                      ....             ....+..|.+.+||..+++++ .+..|.+||++......+.     ........-+.++|||.
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-----~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-----PKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-----ccCCCceeeEEEcCCCC
Confidence            1111             112457899999998887765 4678999996544322222     11224456789999999


Q ss_pred             EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCCEE----
Q psy13998        158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVI----  232 (319)
Q Consensus       158 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~~~----  232 (319)
                      +++++.-|....+|+....-     ... +.      .-.......-+++|+|+ ++++.+..-.++....+++..    
T Consensus       252 ~lfaAt~davfrlw~e~q~w-----t~e-rw------~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~  319 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSW-----TKE-RW------ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLR  319 (445)
T ss_pred             EEEEecccceeeeehhcccc-----eec-ce------eccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccC
Confidence            99999999999999654211     000 00      01112556778999995 566777777776654332211    


Q ss_pred             ------EEe----CCCCC---CcccccCcceEEEcCCCcEEEEeCCCC--------EEEEEcCCCceEEeecccCCCCCC
Q psy13998        233 ------TSF----GSEGS---EEGQLKFPRGVAVDDQGYISVGDSGNN--------RIQIFTPDGQFLRAFGCWGSGDGE  291 (319)
Q Consensus       233 ------~~~----~~~~~---~~~~~~~~~~i~~~~~g~~~v~~~~~~--------~i~~~~~~g~~~~~~~~~~~~~~~  291 (319)
                            ..+    .....   ..--...+.++++||.|.++++.....        .|.+|+........+...+  ...
T Consensus       320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg--~i~  397 (445)
T KOG2139|consen  320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCG--MIG  397 (445)
T ss_pred             cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecc--ccc
Confidence                  011    00000   000124578899999998887765432        3566664333332332111  112


Q ss_pred             CCCcceEEEcc---CCcEEEEeCCCCeEEe
Q psy13998        292 FKGLEGVAVMS---NGNILVCDRENHRIQV  318 (319)
Q Consensus       292 ~~~~~~l~~~~---~g~~~v~~~~~~~i~v  318 (319)
                      ...|.-|.|.|   +|.++..+...|+|.-
T Consensus       398 ge~P~~IsF~pl~n~g~lLsiaWsTGriq~  427 (445)
T KOG2139|consen  398 GEYPAYISFGPLKNEGRLLSIAWSTGRIQR  427 (445)
T ss_pred             CCCCceEEeeecccCCcEEEEEeccCceEe
Confidence            23477787765   5778887877777754

>KOG1445|consensus

Probab=99.23  E-value=3e-10  Score=92.81  Aligned_cols=193  Identities=13%  Similarity=0.204  Sum_probs=129.7

Q ss_pred             CCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-----------EecCceeeEEcCC-CcEEEEcCCCCeEE
Q psy13998         56 TWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------AFTWPRGIAVGPD-NSIVVADSSNHRVQ  122 (319)
Q Consensus        56 ~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~-g~~~~~~~~~~~i~  122 (319)
                      ..+..+.|+| |...++.+..++.|++    |.+..++.-.           +...+..+.|+|- .++++++++|.+|.
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~l----Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINL----WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEE----EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence            4578889998 7778888899999999    7776543322           4456788889885 36888889999999


Q ss_pred             EEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        123 VFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      +|| .+++....+      .+|...+.+++|+|+|+.+++.+.|+++++|+.+...     +.+..  ..+...   ..-
T Consensus       704 lWDl~~~~~~~~l------~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-----~pv~E--g~gpvg---tRg  767 (1012)
T KOG1445|consen  704 LWDLANAKLYSRL------VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-----QPVYE--GKGPVG---TRG  767 (1012)
T ss_pred             eeehhhhhhhhee------ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-----Ccccc--CCCCcc---Ccc
Confidence            999 566666566      6788899999999999999999999999999987431     11111  111000   111


Q ss_pred             eeEEEcCCCcEEEEeCC----CCeEEEEeC---CCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEc
Q psy13998        202 HYIAVSNTNRVIVSDSN----NHRVQIFDV---NGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFT  273 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~----~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~  273 (319)
                      ..+.|.-+|+++++...    ...|.+||.   ++..+........     ..+.--.+++| +.+|+++-+|..|+.|.
T Consensus       768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             eeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-----CccccccccCCCceEEEecCCCceEEEEE
Confidence            23556667877665543    356788874   3333332211100     01111124556 45888999999999998

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=1.4e-08  Score=84.87  Aligned_cols=178  Identities=13%  Similarity=0.086  Sum_probs=98.6

Q ss_pred             CceeeEEcCCCcEEEEcC---CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCC--CEEEEEe
Q psy13998         99 WPRGIAVGPDNSIVVADS---SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNN--HRVQIFD  172 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~--~~i~~~~  172 (319)
                      ...+.+|+|+|+.++..+   ....|++|+..+.....+...   .   ......+|+|+|+. +++...+  ..|++|+
T Consensus       205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---~---g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d  278 (433)
T PRK04922        205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF---R---GINGAPSFSPDGRRLALTLSRDGNPEIYVMD  278 (433)
T ss_pred             ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC---C---CCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence            356788999997444332   234799999544333333211   1   12246789999964 4444433  4688898


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CC--CeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +.+..      . ..+      ..+.......+++|+|+.++..+ ..  ..|++++.++.....+..    .+  ....
T Consensus       279 ~~~g~------~-~~l------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~----~g--~~~~  339 (433)
T PRK04922        279 LGSRQ------L-TRL------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF----QG--NYNA  339 (433)
T ss_pred             CCCCC------e-EEC------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec----CC--CCcc
Confidence            87532      1 111      11111234578999997554333 23  358888865443443311    11  1234


Q ss_pred             eEEEcCCCcEEEEe-CCC--CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998        250 GVAVDDQGYISVGD-SGN--NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       250 ~i~~~~~g~~~v~~-~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v  308 (319)
                      ..+++|+|+.++.. ..+  ..|.+|+..+...+.+.       +........|+|||++++
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-------~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-------PGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-------CCCCCCCceECCCCCEEE
Confidence            67999999755443 322  36999996544444442       111234568999998433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.9e-08  Score=82.70  Aligned_cols=179  Identities=12%  Similarity=0.050  Sum_probs=95.3

Q ss_pred             CceeeEEcCCCcEEE-EcCC--CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEE-EEeCCCCE--EEEEe
Q psy13998         99 WPRGIAVGPDNSIVV-ADSS--NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNHR--VQIFD  172 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~~~--i~~~~  172 (319)
                      .....+|+|+|+.++ +...  ...|++||..+.....+...   .   ......+|+|||+.+ ++...++.  |+.++
T Consensus       197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~---~---g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF---K---GSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC---C---CCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            446789999997444 3322  34699999543333333211   1   223568999999654 45555555  44445


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE-EeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      ..+.       ....+.      .+........++|+|+.++ +...  ...|++++.++.....+..    .+  ....
T Consensus       271 ~~~~-------~~~~lt------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~----~g--~~~~  331 (427)
T PRK02889        271 ADGS-------GLRRLT------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF----TG--SYNT  331 (427)
T ss_pred             CCCC-------CcEECC------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec----CC--CCcC
Confidence            5432       112221      1111223467999997544 3322  2356666655443333311    11  1223


Q ss_pred             eEEEcCCCcEEEEeCCC---CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        250 GVAVDDQGYISVGDSGN---NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~---~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                      ..+++|+|+.++..+..   ..|++|+.++...+.+..     .  .......|+|||+.++.
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-----~--~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-----T--TRDESPSFAPNGRYILY  387 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-----C--CCccCceECCCCCEEEE
Confidence            56899999765543332   379999965433444421     1  12356789999984433

>KOG2111|consensus

Probab=99.20  E-value=8.6e-09  Score=77.36  Aligned_cols=225  Identities=12%  Similarity=0.205  Sum_probs=137.0

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-cCceeeEEcC----CCcEEEEcCC------CCeEEEEc-
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-TWPRGIAVGP----DNSIVVADSS------NHRVQVFQ-  125 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~l~~~~----~g~~~~~~~~------~~~i~~~~-  125 (319)
                      +..++|..|..-|+.+..+ -.++    |+.+.-++..+. ....++.+..    .+-+.+.++.      .+.+.+|| 
T Consensus         8 ~lsvs~NQD~ScFava~~~-Gfri----yn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDT-GFRI----YNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             eeEEEEccCCceEEEEecC-ceEE----EecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            3448888776666665544 4566    555432221110 1111221111    1112233332      25899999 


Q ss_pred             CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      ...+.+.++..       ...+.++.+..+. +.+.  ..++|++|....     +.+.+..+..       ...|.|++
T Consensus        83 ~k~~~i~el~f-------~~~I~~V~l~r~r-iVvv--l~~~I~VytF~~-----n~k~l~~~et-------~~NPkGlC  140 (346)
T KOG2111|consen   83 LKERCIIELSF-------NSEIKAVKLRRDR-IVVV--LENKIYVYTFPD-----NPKLLHVIET-------RSNPKGLC  140 (346)
T ss_pred             ccCcEEEEEEe-------ccceeeEEEcCCe-EEEE--ecCeEEEEEcCC-----Chhheeeeec-------ccCCCceE
Confidence            55666665532       2456777777643 3333  247889887653     1233343322       23355544


Q ss_pred             E-cCC-CcEEEE--eCCCCeEEEEeCCCCEE---EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCE-EEEEc-CCC
Q psy13998        206 V-SNT-NRVIVS--DSNNHRVQIFDVNGRVI---TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNR-IQIFT-PDG  276 (319)
Q Consensus       206 ~-~~~-g~~~v~--~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~-i~~~~-~~g  276 (319)
                      . +|. +..+++  +...|.|++.|......   ..+      .+|...+.+++++-+|.++++++..|+ |++|| .+|
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I------~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g  214 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII------NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG  214 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE------EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence            3 342 233333  34568999998654332   333      678888999999999999999999887 57899 688


Q ss_pred             ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        277 QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+.++..    -.....+.+|+|+||..++++.+.-|+|+||
T Consensus       215 ~~l~E~RR----G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  215 TLLQELRR----GVDRADIYCIAFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             cEeeeeec----CCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence            88888742    1234568999999999999999999999987

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.20  E-value=8.6e-09  Score=75.68  Aligned_cols=104  Identities=19%  Similarity=0.283  Sum_probs=75.8

Q ss_pred             CceeEEEcCCCcEEEE--eCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC---CCEEEEEcC
Q psy13998        200 HPHYIAVSNTNRVIVS--DSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG---NNRIQIFTP  274 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~---~~~i~~~~~  274 (319)
                      .+..++++|+|+.+++  +.....|.+||.+++.+..+.        ......|.|+|+|+++++++.   .|.|.+||.
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--------CCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            3688999999976533  445678999999888887773        124567999999998887653   467999995


Q ss_pred             C-CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC------CCeEEeC
Q psy13998        275 D-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE------NHRIQVF  319 (319)
Q Consensus       275 ~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~------~~~i~v~  319 (319)
                      + .+.+...        ....+..++|+|||+++++...      |+.++||
T Consensus       133 ~~~~~i~~~--------~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw  176 (194)
T PF08662_consen  133 RKKKKISTF--------EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW  176 (194)
T ss_pred             CCCEEeecc--------ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence            4 4455444        2335789999999998887764      5556665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.19  E-value=1.4e-07  Score=78.86  Aligned_cols=266  Identities=17%  Similarity=0.324  Sum_probs=164.6

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCc---------C-CCCcceEE-cCCCc-EEEEeCC-CCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC---------F-TWPRGIAV-GPDNS-IVVADSS-NHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~-~~~~~v~~-~~~g~-~~~~~~~-~~~v~~~~~~~~   87 (319)
                      ...+..+.+.+.+..+.....+..+..|....+.         . .....+.+ .+++. +++..+. ++.+.+    |+
T Consensus        65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~  140 (466)
T COG2319          65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL----WD  140 (466)
T ss_pred             cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE----EE
Confidence            4556666666666666655444443333322221         1 13455555 67777 5554444 889999    77


Q ss_pred             ccc-ceeeE----EecCceeeEEcCCCcEEEEcCC-CCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCe-EE
Q psy13998         88 LKT-NCVFL----AFTWPRGIAVGPDNSIVVADSS-NHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VI  159 (319)
Q Consensus        88 ~~~-~~~~~----~~~~~~~l~~~~~g~~~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~  159 (319)
                      ... .....    +...+..+++++++..++.+.. ++.+.+|+.. ++.+..+      ..+...+..+++.+++. ++
T Consensus       141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~  214 (466)
T COG2319         141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL------AGHTDPVSSLAFSPDGGLLI  214 (466)
T ss_pred             ecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee------ccCCCceEEEEEcCCcceEE
Confidence            754 22222    3345678999999987777775 8999999944 5666655      34567789999999887 55


Q ss_pred             EEeCCCCEEEEEecCCceeeecCceee-eecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE--EEEeC
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQSDGTFVG-KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV--ITSFG  236 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~--~~~~~  236 (319)
                      ++...++.+.+|+...      +.... .+      ..+.... -..+.+++.++++...++.+++|+.....  .... 
T Consensus       215 ~~~~~d~~i~~wd~~~------~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-  280 (466)
T COG2319         215 ASGSSDGTIRLWDLST------GKLLRSTL------SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-  280 (466)
T ss_pred             EEecCCCcEEEEECCC------CcEEeeec------CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-
Confidence            5558899999997652      23332 12      1222221 12688888788888899999999965322  2222 


Q ss_pred             CCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCC
Q psy13998        237 SEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENH  314 (319)
Q Consensus       237 ~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~  314 (319)
                           ..+...+.++.+.|++..+++++.++.+.+|+... .......    ...+...+..+.+.+++. +..+...++
T Consensus       281 -----~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~  351 (466)
T COG2319         281 -----SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDG  351 (466)
T ss_pred             -----ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEEEeecCCC
Confidence                 23345677889999877777777778899998543 3333331    013444577788833323 444435667


Q ss_pred             eEEeC
Q psy13998        315 RIQVF  319 (319)
Q Consensus       315 ~i~v~  319 (319)
                      .+++|
T Consensus       352 ~~~~~  356 (466)
T COG2319         352 TIRLW  356 (466)
T ss_pred             cEEee
Confidence            77665

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.19  E-value=2.3e-08  Score=80.91  Aligned_cols=189  Identities=20%  Similarity=0.273  Sum_probs=116.5

Q ss_pred             EEEEeCCCCeEEEeccccccccceeeEEec---Cc-eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCC
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WP-RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ  143 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~-~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~  143 (319)
                      ++++...+++|.+    +|..+.+.+..+.   .+ ..+++++||+.++..+.++.|.++| .+.+.+.++...      
T Consensus         8 ~~V~~~~~~~v~v----iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G------   77 (369)
T PF02239_consen    8 FYVVERGSGSVAV----IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG------   77 (369)
T ss_dssp             EEEEEGGGTEEEE----EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S------
T ss_pred             EEEEecCCCEEEE----EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC------
Confidence            4578888999999    8888877766554   33 4577899998555556789999999 677888887432      


Q ss_pred             CCCceeEEEeCCCeEEE-EeCCCCEEEEEecCCceeeecCceeeeecccCCcC-CCCCCceeEEEcCCCcEEE-EeCCCC
Q psy13998        144 LEHPHYIAVSNTNRVIV-SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA-GQLEHPHYIAVSNTNRVIV-SDSNNH  220 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~v-~~~~~~  220 (319)
                       ..+.+++++++|++++ ++...+.+.++|.++.      +.+..+...+... .....+.++..++....|+ +--..+
T Consensus        78 -~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~  150 (369)
T PF02239_consen   78 -GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG  150 (369)
T ss_dssp             -SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred             -CCcceEEEcCCCCEEEEEecCCCceeEeccccc------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence             4578999999997655 5567899999998753      3444432211100 1223456677777776554 445568


Q ss_pred             eEEEEeCC-CC-EEEEeCCCCCCcccccCcceEEEcCCCcEE-EEeCCCCEEEEEcC-CCceEE
Q psy13998        221 RVQIFDVN-GR-VITSFGSEGSEEGQLKFPRGVAVDDQGYIS-VGDSGNNRIQIFTP-DGQFLR  280 (319)
Q Consensus       221 ~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~-v~~~~~~~i~~~~~-~g~~~~  280 (319)
                      .|.+.|.. .. .....      ......|.+..++|++++| ++...++.|.++|. +++.+.
T Consensus       151 ~I~vVdy~d~~~~~~~~------i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  151 EIWVVDYSDPKNLKVTT------IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EEEEEETTTSSCEEEEE------EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eEEEEEeccccccceee------ecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence            99999843 22 22222      1223467889999999755 55567788888884 444433

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=3.2e-08  Score=82.45  Aligned_cols=197  Identities=16%  Similarity=0.120  Sum_probs=109.2

Q ss_pred             CCCcceEEcCCCcEEEEeC---CCCeEEEeccccccccceeeE--Eec-CceeeEEcCCCcE-EEEcCCCC--eEEEEcC
Q psy13998         56 TWPRGIAVGPDNSIVVADS---SNHRVQVCFPHFDLKTNCVFL--AFT-WPRGIAVGPDNSI-VVADSSNH--RVQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~---~~~~v~~~~~~~~~~~~~~~~--~~~-~~~~l~~~~~g~~-~~~~~~~~--~i~~~~~  126 (319)
                      ..+.+.+|+|||+.++..+   ....|.+    |++.++....  .+. .....+|+|||+. +++...++  .|+.++.
T Consensus       196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~----~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        196 EPIISPAWSPDGTKLAYVSFESKKPVVYV----HDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             CCcccceEcCCCCEEEEEEccCCCcEEEE----EECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            4567889999998655433   2346888    8886554322  122 3356899999964 44544444  4666665


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCCE--EEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHR--VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      ++.....+..      +........|+|||+.++..+ ..+.  |+.++..+.      .. .....    ..  .....
T Consensus       272 ~~~~~~~lt~------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g------~~-~~lt~----~g--~~~~~  332 (427)
T PRK02889        272 DGSGLRRLTQ------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG------AA-QRVTF----TG--SYNTS  332 (427)
T ss_pred             CCCCcEECCC------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC------ce-EEEec----CC--CCcCc
Confidence            5554444421      112234578999997554333 3333  444454432      11 11100    00  11224


Q ss_pred             EEEcCCCcEEEEeCCC---CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-CC--CEEEEEcCCCc
Q psy13998        204 IAVSNTNRVIVSDSNN---HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-GN--NRIQIFTPDGQ  277 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-~~--~~i~~~~~~g~  277 (319)
                      .+++|+|+.++.....   ..|++|+.++...+.+..     .  .......|+|+|+.++... ..  ..+++.+.+|+
T Consensus       333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-----~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~  405 (427)
T PRK02889        333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-----T--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR  405 (427)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-----C--CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence            6789999765543322   369999975544444421     1  1224578999997544433 22  35777778887


Q ss_pred             eEEee
Q psy13998        278 FLRAF  282 (319)
Q Consensus       278 ~~~~~  282 (319)
                      ..+.+
T Consensus       406 ~~~~l  410 (427)
T PRK02889        406 IKQRL  410 (427)
T ss_pred             ceEEe
Confidence            76665

>KOG1587|consensus

Probab=99.18  E-value=9.5e-09  Score=85.97  Aligned_cols=215  Identities=10%  Similarity=0.074  Sum_probs=132.4

Q ss_pred             CceeeEEcCCC-cEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecC
Q psy13998         99 WPRGIAVGPDN-SIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus        99 ~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~  174 (319)
                      .+.+++++|.. ++++++..+|.|.+||.. +.........-....|...+..+.+..+  +.-|++.+.||+|..|+++
T Consensus       244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~  323 (555)
T KOG1587|consen  244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD  323 (555)
T ss_pred             ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence            56788998864 788999999999999943 3221011111111344556677777653  2447777789999999877


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEEEE---eCCCCCCcccccCcce
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVITS---FGSEGSEEGQLKFPRG  250 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  250 (319)
                      ....-..+.........+...........+.|.+.. +.|++++..|.|+.-+..|.....   +........+...+..
T Consensus       324 ~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~  403 (555)
T KOG1587|consen  324 MLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA  403 (555)
T ss_pred             ccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence            532211222211111111111223345678887644 789999999999986654322111   1111011334556677


Q ss_pred             EEEcCCCcEEEEeCCCCEEEEEcC--CCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        251 VAVDDQGYISVGDSGNNRIQIFTP--DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       251 i~~~~~g~~~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +.++|=+..++....|-++++|..  ...++..+      ..+...+.+++|+|-.- +|++...+|.|.+|
T Consensus       404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW  469 (555)
T KOG1587|consen  404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW  469 (555)
T ss_pred             eecCCCccceeeeeccceeEeccccCCCCcchhh------hhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence            888887754455555999999994  34455444      34555699999999754 89999999999998

>KOG2394|consensus

Probab=99.16  E-value=1.1e-09  Score=87.70  Aligned_cols=190  Identities=12%  Similarity=0.130  Sum_probs=119.3

Q ss_pred             CCCcEEEEeCCCCeEEEeccccccccce-----eeEEecCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCCC
Q psy13998         65 PDNSIVVADSSNHRVQVCFPHFDLKTNC-----VFLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMG  138 (319)
Q Consensus        65 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  138 (319)
                      +.+--++.+-..|.|..++|.. .+...     .......+.++.|-|.+ .++++...++.++.||..      +    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~------~----  251 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE------I----  251 (636)
T ss_pred             CCCcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc------c----
Confidence            3444455566667787744321 10000     01122467788888765 577777778888888851      1    


Q ss_pred             ccCCCCCCceeEEEeCCCeEEEEeCC-----CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE
Q psy13998        139 NKAGQLEHPHYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI  213 (319)
Q Consensus       139 ~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  213 (319)
                        ......|...+ .+++..|.....     .+-+..|...                       ...++.++|++||+++
T Consensus       252 --~~~~t~p~~~~-~k~~~~f~i~t~ksk~~rNPv~~w~~~-----------------------~g~in~f~FS~DG~~L  305 (636)
T KOG2394|consen  252 --VCGATAPSYQA-LKDGDQFAILTSKSKKTRNPVARWHIG-----------------------EGSINEFAFSPDGKYL  305 (636)
T ss_pred             --cccCCCCcccc-cCCCCeeEEeeeeccccCCccceeEec-----------------------cccccceeEcCCCceE
Confidence              00011112112 223333332211     1223333221                       1256779999999999


Q ss_pred             EEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCC
Q psy13998        214 VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEF  292 (319)
Q Consensus       214 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~  292 (319)
                      ++.+.|+.+++|+-+.+.+.-..     ...+....+++|+|||++++++++|.-|.+|. .+.+++..-      .+|.
T Consensus       306 A~VSqDGfLRvF~fdt~eLlg~m-----kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG------qGHk  374 (636)
T KOG2394|consen  306 ATVSQDGFLRIFDFDTQELLGVM-----KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG------QGHK  374 (636)
T ss_pred             EEEecCceEEEeeccHHHHHHHH-----HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec------cccc
Confidence            99999999999997654433221     34455678999999999999999999999999 566666655      6899


Q ss_pred             CCcceEEEcc
Q psy13998        293 KGLEGVAVMS  302 (319)
Q Consensus       293 ~~~~~l~~~~  302 (319)
                      .+++.++|+|
T Consensus       375 SWVs~VaFDp  384 (636)
T KOG2394|consen  375 SWVSVVAFDP  384 (636)
T ss_pred             cceeeEeecc
Confidence            9999999995

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=99.16  E-value=5.6e-08  Score=73.32  Aligned_cols=212  Identities=16%  Similarity=0.145  Sum_probs=131.0

Q ss_pred             ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-----CcE---EEEecCCCccCCCCCCceeEEEeCCCe-----------
Q psy13998         97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-----GTF---VGKFGSMGNKAGQLEHPHYIAVSNTNR-----------  157 (319)
Q Consensus        97 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~l~~~~~g~-----------  157 (319)
                      +..+.+|+++|.+.+|+++...+...+||.+     +..   +..+..... ......|+++.+.....           
T Consensus        22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-~~~~~~PTGiVfN~~~~F~vt~~g~~~~  100 (336)
T TIGR03118        22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-LAAEGTPTGQVFNGSDTFVVSGEGITGP  100 (336)
T ss_pred             ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-CCCCCCccEEEEeCCCceEEcCCCcccc
Confidence            4578999999999999999999999999955     322   222221111 11235678888874322           


Q ss_pred             -EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---CcEEEEeCCCCeEEEEeCCCCEEE
Q psy13998        158 -VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDVNGRVIT  233 (319)
Q Consensus       158 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~i~~~~~~~~~~~  233 (319)
                       .|+.++++++|.-|...-.........+. +..    ...-..-.++++...   ..+|+++..+++|.+||.+-..+.
T Consensus       101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~-~d~----s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIV-VDA----SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             eeEEEEeCCceEEeecCcCCcccccccEEE-Ecc----CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence             35666788888888753211000001110 000    001122356777633   478999999999999997654432


Q ss_pred             EeCCCC-CCcccccCcceEEEcCCCcEEEE-------------eCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEE
Q psy13998        234 SFGSEG-SEEGQLKFPRGVAVDDQGYISVG-------------DSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVA  299 (319)
Q Consensus       234 ~~~~~~-~~~~~~~~~~~i~~~~~g~~~v~-------------~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  299 (319)
                      .-+... ........|..|..- .+++||+             +...+.|-+||.+|++++.+..    .+.+..||+|+
T Consensus       176 ~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as----~g~LNaPWG~a  250 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS----SGRLNAPWGLA  250 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc----CCcccCCceee
Confidence            211000 000111234444432 2456655             3445799999999999998854    56788999999


Q ss_pred             Ecc------CCcEEEEeCCCCeEEeC
Q psy13998        300 VMS------NGNILVCDRENHRIQVF  319 (319)
Q Consensus       300 ~~~------~g~~~v~~~~~~~i~v~  319 (319)
                      ..|      .|.++|....|++|..|
T Consensus       251 ~APa~FG~~sg~lLVGNFGDG~InaF  276 (336)
T TIGR03118       251 IAPESFGSLSGALLVGNFGDGTINAY  276 (336)
T ss_pred             eChhhhCCCCCCeEEeecCCceeEEe
Confidence            976      47899999999999876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2139|consensus

Probab=99.15  E-value=2.1e-08  Score=76.74  Aligned_cols=208  Identities=12%  Similarity=0.127  Sum_probs=130.0

Q ss_pred             CCCcceEEcCCCcEEEEeC-CCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         56 TWPRGIAVGPDNSIVVADS-SNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      ..|..|.+.+||..+++++ .+..|.+    |+..++..+.    .+....-+.|+|||..+++++-|....+|+.+...
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~i----Wdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w  271 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMI----WDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW  271 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEE----EcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc
Confidence            6789999999999998876 5778999    7776655433    33455678999999999999999999999743322


Q ss_pred             E-EEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeec--Cc-----eeeeecccCC---cCCCC
Q psy13998        131 V-GKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSD--GT-----FVGKFGSMGN---KAGQL  198 (319)
Q Consensus       131 ~-~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~--~~-----~~~~~~~~~~---~~~~~  198 (319)
                      . ..+.      ....++...+++|.|. ++++.+....++.....++-....  +.     ++..+.....   ..---
T Consensus       272 t~erw~------lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~c  345 (445)
T KOG2139|consen  272 TKERWI------LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCC  345 (445)
T ss_pred             eeccee------ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccccc
Confidence            1 1121      1123778899999884 566666666666555443311111  00     0111100000   00112


Q ss_pred             CCceeEEEcCCCcEEEEeCCC--------CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC---CCcEEEEeCCCC
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD---QGYISVGDSGNN  267 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~g~~~v~~~~~~  267 (319)
                      ..+.+|++||.|.++++....        ..|.+||........+...+...+.  .|.-|.|.|   +|.++..+...|
T Consensus       346 geaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge--~P~~IsF~pl~n~g~lLsiaWsTG  423 (445)
T KOG2139|consen  346 GEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE--YPAYISFGPLKNEGRLLSIAWSTG  423 (445)
T ss_pred             CccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC--CCceEEeeecccCCcEEEEEeccC
Confidence            356889999999887776543        3466777655555555333332222  377788876   467888877788


Q ss_pred             EEEEEcCC
Q psy13998        268 RIQIFTPD  275 (319)
Q Consensus       268 ~i~~~~~~  275 (319)
                      ++..|...
T Consensus       424 riq~ypl~  431 (445)
T KOG2139|consen  424 RIQRYPLT  431 (445)
T ss_pred             ceEeeeeE
Confidence            88877743

>KOG1310|consensus

Probab=99.15  E-value=1.6e-09  Score=87.15  Aligned_cols=170  Identities=12%  Similarity=0.172  Sum_probs=114.7

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEe
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFD  172 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~  172 (319)
                      |-..++++.|+.+|.++++++.|-++.+|| ..-+.+..+.     .+|...+.++.|-|  ++++++++..|..|++||
T Consensus        49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-----TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-----TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-----cccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            455789999999999999999999999999 4556666654     56788889999988  568999999999999999


Q ss_pred             cCCceee-ecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCC-EEEEeC-CC---CCCcccc
Q psy13998        173 VNGRVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGR-VITSFG-SE---GSEEGQL  245 (319)
Q Consensus       173 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~-~~~~~~-~~---~~~~~~~  245 (319)
                      ++...-. .+.........   -..+...+..|+..|++ +.+++++.||.|+.+|.... ....-. ..   ......+
T Consensus       124 l~~~~~~~~d~~~~~~~~~---~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRC---WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             cccccccccccCccchhhh---hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            8731100 00000000000   01234455668888888 88999999999999995421 100000 00   0001233


Q ss_pred             cCcceEEEcCCC-cEEEEeCCCCEEEEEc
Q psy13998        246 KFPRGVAVDDQG-YISVGDSGNNRIQIFT  273 (319)
Q Consensus       246 ~~~~~i~~~~~g-~~~v~~~~~~~i~~~~  273 (319)
                      -...++.++|.. .+++.++.+--.++||
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhh
Confidence            345788999875 5777777777788888

>KOG1007|consensus

Probab=99.14  E-value=1e-08  Score=75.96  Aligned_cols=157  Identities=10%  Similarity=0.109  Sum_probs=107.3

Q ss_pred             CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC--CCcEEEEeCCCCe
Q psy13998        144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHR  221 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~  221 (319)
                      ...+.++.|.|++..+++-. ++.|.+|+++...     +.+........ ..+....++-+++|  +++.+.+. .++.
T Consensus       123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess-----~~vaev~ss~s-~e~~~~ftsg~WspHHdgnqv~tt-~d~t  194 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESS-----KIVAEVLSSES-AEMRHSFTSGAWSPHHDGNQVATT-SDST  194 (370)
T ss_pred             hCceeeEEEcCCCCeeEEec-cCceEEEEcccCc-----chheeeccccc-ccccceecccccCCCCccceEEEe-CCCc
Confidence            34678999999887777654 7889999987421     11222211111 11222334556776  56666554 4778


Q ss_pred             EEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC--CCceEEeecccCCCCCCCCCcce
Q psy13998        222 VQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP--DGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       222 i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      +..||.... ....+.     .+|...+..+.+.|+. .++++++.++.|++||.  ....++.+      .+|..++++
T Consensus       195 l~~~D~RT~~~~~sI~-----dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el------~~HsHWvW~  263 (370)
T KOG1007|consen  195 LQFWDLRTMKKNNSIE-----DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL------PGHSHWVWA  263 (370)
T ss_pred             EEEEEccchhhhcchh-----hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc------CCCceEEEE
Confidence            999996532 222221     4566678899999986 58889999999999993  34566666      788999999


Q ss_pred             EEEccCC-cEEEEeCCCCeEEeC
Q psy13998        298 VAVMSNG-NILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g-~~~v~~~~~~~i~v~  319 (319)
                      +.|+|.- .++.+++.|.+|.+|
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Ls  286 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLS  286 (370)
T ss_pred             EEecCccceEEEecCCCceeEEE
Confidence            9999864 599999999988764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.12  E-value=7.2e-08  Score=80.57  Aligned_cols=196  Identities=15%  Similarity=0.154  Sum_probs=111.8

Q ss_pred             CCcceEEcCCCcEEEEeC---CCCeEEEeccccccccceeeE--Eec-CceeeEEcCCCc-EEEEcCCC--CeEEEEcCC
Q psy13998         57 WPRGIAVGPDNSIVVADS---SNHRVQVCFPHFDLKTNCVFL--AFT-WPRGIAVGPDNS-IVVADSSN--HRVQVFQSD  127 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~---~~~~v~~~~~~~~~~~~~~~~--~~~-~~~~l~~~~~g~-~~~~~~~~--~~i~~~~~~  127 (319)
                      .+...+++|+|+.++...   ....|++    |++.++....  ... ....++|+|+|+ ++++...+  ..|++|+..
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v----~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYV----QDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEE----EECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            356678999999655443   2357888    8876553322  121 345688999986 54554433  468889965


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-EeCCC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      +.....+...      ........++++|+.++ +....  ..|+++++.+.      +. ..+.      .........
T Consensus       267 ~~~~~~l~~~------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~------~~-~~l~------~~~~~~~~~  327 (417)
T TIGR02800       267 GKQLTRLTNG------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG------EV-RRLT------FRGGYNASP  327 (417)
T ss_pred             CCCEEECCCC------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC------CE-EEee------cCCCCccCe
Confidence            5444444211      11224567889886554 33322  36777777643      11 1111      011233457


Q ss_pred             EEcCCCcEEEEeCCCC---eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-C--CEEEEEcCCCce
Q psy13998        205 AVSNTNRVIVSDSNNH---RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-N--NRIQIFTPDGQF  278 (319)
Q Consensus       205 ~~~~~g~~~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-~--~~i~~~~~~g~~  278 (319)
                      +++|+|++++....++   .|++++..+.....+...       .......++|+|+.++..+. +  ..+++++.+|+.
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-------~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~  400 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-------GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF  400 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-------CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence            8899987665554443   788999765444444211       11234578999875444332 2  356777777876


Q ss_pred             EEee
Q psy13998        279 LRAF  282 (319)
Q Consensus       279 ~~~~  282 (319)
                      ...+
T Consensus       401 ~~~~  404 (417)
T TIGR02800       401 RARL  404 (417)
T ss_pred             eeEC
Confidence            6655

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.12  E-value=1.5e-07  Score=78.63  Aligned_cols=178  Identities=14%  Similarity=0.101  Sum_probs=99.8

Q ss_pred             ceeeEEcCCCcEEEEcC-C--CCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCC--CEEEEEe
Q psy13998        100 PRGIAVGPDNSIVVADS-S--NHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN--HRVQIFD  172 (319)
Q Consensus       100 ~~~l~~~~~g~~~~~~~-~--~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~--~~i~~~~  172 (319)
                      ....+++|+|+.++... .  ...|++|+.. ++......       .......++|+|+|+ ++++...+  ..|++|+
T Consensus       192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-------CCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            45678999997544332 2  2579999954 44332221       112335678999986 44554433  4588888


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE-EEeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +.+...       ..+.      .+........++++|+.+ ++...  ...|++++.++.....+.      .......
T Consensus       265 ~~~~~~-------~~l~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~------~~~~~~~  325 (417)
T TIGR02800       265 LDGKQL-------TRLT------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT------FRGGYNA  325 (417)
T ss_pred             CCCCCE-------EECC------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee------cCCCCcc
Confidence            775321       1111      011112345788888654 33332  237888887654444441      1223456


Q ss_pred             eEEEcCCCcEEEEeCCCC---EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        250 GVAVDDQGYISVGDSGNN---RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~---~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      ...++|+|+.++....++   .|.+++..+...+.+..      . .......|+|||+.++..
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~------~-~~~~~p~~spdg~~l~~~  382 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD------T-GLDESPSFAPNGRMILYA  382 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC------C-CCCCCceECCCCCEEEEE
Confidence            778999997666555444   78899966544444421      1 123445789998844433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111|consensus

Probab=99.11  E-value=5e-08  Score=73.38  Aligned_cols=170  Identities=13%  Similarity=0.203  Sum_probs=114.2

Q ss_pred             CeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEc-C-CCcEEEEecCCCccCCCCCCceeEE
Q psy13998         77 HRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQ-S-DGTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                      +.|.+    ||-.....+.++.   .+.++.+.++. +.+.-  .++|++|+ . +-+.+..+....       .|.+++
T Consensus        75 NkviI----WDD~k~~~i~el~f~~~I~~V~l~r~r-iVvvl--~~~I~VytF~~n~k~l~~~et~~-------NPkGlC  140 (346)
T KOG2111|consen   75 NKVII----WDDLKERCIIELSFNSEIKAVKLRRDR-IVVVL--ENKIYVYTFPDNPKLLHVIETRS-------NPKGLC  140 (346)
T ss_pred             ceEEE----EecccCcEEEEEEeccceeeEEEcCCe-EEEEe--cCeEEEEEcCCChhheeeeeccc-------CCCceE
Confidence            57889    7765555555443   66788887653 33332  56899999 4 445566664432       234443


Q ss_pred             -EeC--CCeEEEE-eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCe-EEEEe
Q psy13998        152 -VSN--TNRVIVS-DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR-VQIFD  226 (319)
Q Consensus       152 -~~~--~g~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-i~~~~  226 (319)
                       +.|  +..+++. +..-|.|.+.|+......          ......+|...+.+++++.+|.++++++..|+ |++||
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN----------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD  210 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhhcCcC----------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence             233  3344443 345688999887642111          01112567788999999999999999998887 57899


Q ss_pred             C-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        227 V-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       227 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      . +|..+..+..    ......+.+|+|+|+..++++.+..++|++|..
T Consensus       211 t~~g~~l~E~RR----G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  211 TEDGTLLQELRR----GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             cCCCcEeeeeec----CCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            4 7887777632    122345789999999999999999999999984

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.11  E-value=1.7e-07  Score=70.31  Aligned_cols=207  Identities=12%  Similarity=0.193  Sum_probs=131.1

Q ss_pred             cCceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998         98 TWPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus        98 ~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      ....+++++|+.+ +|.+....-.|.-.+.+|..+.++...     ....|.+|++..+|++.++...+..+.++.++..
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-----g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-----GFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-----ccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3578999999976 555555556788888999999998744     3577889999998999999999999988866532


Q ss_pred             --eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE----EEEeCCCC-CCcccccCcc
Q psy13998        177 --VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV----ITSFGSEG-SEEGQLKFPR  249 (319)
Q Consensus       177 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~----~~~~~~~~-~~~~~~~~~~  249 (319)
                        ...... ..-.++..   ...-..-.|+++++..+.++..-..+.+.+|..++..    +....... ...-....+.
T Consensus       161 t~~~~~~~-~~i~L~~~---~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         161 TTVISAKV-QKIPLGTT---NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             ccEEeccc-eEEecccc---CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence              111111 11111111   1113345789999876444444444455555432211    11110000 0011234467


Q ss_pred             eEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCC---CCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        250 GVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGS---GDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       250 ~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ++.+++. +.++|-+..++.+..++.+|..+..+...+.   .......+.+|+.+.+|.+|+++--+
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            8888864 6899999999999999999987665532221   12234568999999999988876544

>KOG4499|consensus

Probab=99.10  E-value=1.2e-07  Score=68.55  Aligned_cols=219  Identities=14%  Similarity=0.143  Sum_probs=130.8

Q ss_pred             CcEEEEeCCCCeEEEeccccccccceeeE-EecCc--eeeEEcCCC--cEEEEcCC-CCeEEEEcCC---CcEEEEecCC
Q psy13998         67 NSIVVADSSNHRVQVCFPHFDLKTNCVFL-AFTWP--RGIAVGPDN--SIVVADSS-NHRVQVFQSD---GTFVGKFGSM  137 (319)
Q Consensus        67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~g--~~~~~~~~-~~~i~~~~~~---~~~~~~~~~~  137 (319)
                      +.++..+-..+.|..    ||..++.... .+..|  .+..+--.+  +.++++.+ .-.|.-||-.   .+...+...-
T Consensus        27 ~sLl~VDi~ag~v~r----~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev  102 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHR----YDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEV  102 (310)
T ss_pred             ceEEEEEeccCceeh----hhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeecccc
Confidence            567777777888998    8887655443 34433  222221112  34444333 3345566621   2222222111


Q ss_pred             CccCCCCCCceeEEEeCCCeEEEEeCC---------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        138 GNKAGQLEHPHYIAVSNTNRVIVSDSN---------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~g~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      . ......+.++-.++|+|++|.....         .+.++.|-..++.       ...       .....-+++++|+.
T Consensus       103 ~-~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v-------~~i-------~~~v~IsNgl~Wd~  167 (310)
T KOG4499|consen  103 Q-PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV-------ELI-------WNCVGISNGLAWDS  167 (310)
T ss_pred             C-chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc-------eee-------ehhccCCccccccc
Confidence            1 1112345567788999998764332         2455555544321       111       12234568899997


Q ss_pred             CC-cEEEEeCCCCeEEEEe--C-CCC-----EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCce
Q psy13998        209 TN-RVIVSDSNNHRVQIFD--V-NGR-----VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQF  278 (319)
Q Consensus       209 ~g-~~~v~~~~~~~i~~~~--~-~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~  278 (319)
                      +. .+|+.++.+..|..||  . .|.     .+..+...  .+.....|.+++++.+|++|++....++|..+|+ +|+.
T Consensus       168 d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  168 DAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             cCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC--CCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence            65 6889999999997776  2 332     22222211  1223456899999999999999999999999995 7999


Q ss_pred             EEeecccCCCCCCCCCcceEEEccC--CcEEEEeCC
Q psy13998        279 LRAFGCWGSGDGEFKGLEGVAVMSN--GNILVCDRE  312 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~v~~~~  312 (319)
                      +.++      .-....+++++|..-  .-+|++...
T Consensus       246 L~ei------klPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  246 LLEI------KLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             EEEE------EcCCCceEEEEecCCCccEEEEEehh
Confidence            9988      344567899999643  236666543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=9.2e-08  Score=80.03  Aligned_cols=196  Identities=11%  Similarity=0.129  Sum_probs=108.3

Q ss_pred             CCcceEEcCCCcEEEEe-CC--CCeEEEeccccccccceee--EEec-CceeeEEcCCCc-EEEEcCCCC--eEEEEcCC
Q psy13998         57 WPRGIAVGPDNSIVVAD-SS--NHRVQVCFPHFDLKTNCVF--LAFT-WPRGIAVGPDNS-IVVADSSNH--RVQVFQSD  127 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~-~~--~~~v~~~~~~~~~~~~~~~--~~~~-~~~~l~~~~~g~-~~~~~~~~~--~i~~~~~~  127 (319)
                      .+....|+|||+.++.. ..  ...|++    +++.++...  ..+. .....+|+|+|+ ++++...++  .|+++|.+
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~----~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFV----QDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEE----EECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            45678999999855433 22  235777    777654432  2222 224678999997 444444444  58888865


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-EeCCC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      +.....+..      +.......+|+|+|+.++ +...+  ..|+++++.+.      +.. .+..    ..  ......
T Consensus       295 tg~~~~lt~------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g------~~~-~Lt~----~g--~~~~~~  355 (448)
T PRK04792        295 TKALTRITR------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG------KVS-RLTF----EG--EQNLGG  355 (448)
T ss_pred             CCCeEECcc------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------CEE-EEec----CC--CCCcCe
Confidence            554444421      112345678999986544 43323  45677776542      211 1100    00  112335


Q ss_pred             EEcCCCcEE-EEeCCC--CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcE-EEEeCCC--CEEEEEcCCCce
Q psy13998        205 AVSNTNRVI-VSDSNN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYI-SVGDSGN--NRIQIFTPDGQF  278 (319)
Q Consensus       205 ~~~~~g~~~-v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-~v~~~~~--~~i~~~~~~g~~  278 (319)
                      +++|+|+.+ ++...+  ..|+++|.++.....+...     .  ......++|+|+. +++...+  ..+++++.+|+.
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-----~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~  428 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-----R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF  428 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-----C--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            789998654 433333  3677788765444444211     1  1123479999874 3433333  347888888887


Q ss_pred             EEee
Q psy13998        279 LRAF  282 (319)
Q Consensus       279 ~~~~  282 (319)
                      .+.+
T Consensus       429 ~~~l  432 (448)
T PRK04792        429 KARL  432 (448)
T ss_pred             eEEC
Confidence            7766

>KOG2394|consensus

Probab=99.09  E-value=2.1e-09  Score=86.10  Aligned_cols=163  Identities=16%  Similarity=0.174  Sum_probs=106.5

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEe
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKF  134 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~  134 (319)
                      ..+.++.|-|.++ +|+....++.++.    ++.+-.   .....|...+ .+++..|.......   .  .+..++..+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyl----y~~~~~---~~~t~p~~~~-~k~~~~f~i~t~ks---k--~~rNPv~~w  286 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYL----YDKEIV---CGATAPSYQA-LKDGDQFAILTSKS---K--KTRNPVARW  286 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEE----eecccc---ccCCCCcccc-cCCCCeeEEeeeec---c--ccCCcccee
Confidence            5678888888544 6777777888888    655211   0111222222 23444443322111   1  111222222


Q ss_pred             cCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE
Q psy13998        135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV  214 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  214 (319)
                      ..      ....++.++|++||+++++.+.|+.+++||.+.+.      ++..+      ...+....+++|+|||++++
T Consensus       287 ~~------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e------Llg~m------kSYFGGLLCvcWSPDGKyIv  348 (636)
T KOG2394|consen  287 HI------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE------LLGVM------KSYFGGLLCVCWSPDGKYIV  348 (636)
T ss_pred             Ee------ccccccceeEcCCCceEEEEecCceEEEeeccHHH------HHHHH------HhhccceEEEEEcCCccEEE
Confidence            11      11366889999999999999999999999988642      22211      33456678899999999999


Q ss_pred             EeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        215 SDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       215 ~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                      ++..|.-|.+|.. +.+++.+-      .+|..++..++|||
T Consensus       349 tGGEDDLVtVwSf~erRVVARG------qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  349 TGGEDDLVTVWSFEERRVVARG------QGHKSWVSVVAFDP  384 (636)
T ss_pred             ecCCcceEEEEEeccceEEEec------cccccceeeEeecc
Confidence            9999999999995 55555554      78889999999995

>KOG1240|consensus

Probab=99.08  E-value=3.6e-08  Score=86.73  Aligned_cols=245  Identities=10%  Similarity=0.079  Sum_probs=137.1

Q ss_pred             hhhhhhhhh--cccccccC-CCccchhccccceeeeecccCCCC--Cc-------------CCCCcceEEcCCCcEEEEe
Q psy13998         12 SCFLLQTLL--VSGIGQVG-TTPRSQYLQKRRLQFKIGSRGSEP--GC-------------FTWPRGIAVGPDNSIVVAD   73 (319)
Q Consensus        12 ~~~~~~~~~--~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~--~~-------------~~~~~~v~~~~~g~~~~~~   73 (319)
                      .|.++..+.  ...+..++ .++.+.++.+++.+.+++.|+...  ++             -..+..+...++|+.|+.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            355555555  22233444 455558899999998888886432  11             1345667777788888888


Q ss_pred             CCCCeEEEeccccccccc-eeeE--------Ee---cCcee-eEEcC-CCc-EEEEcCCCCeEEEEcC-CCcEEEEecCC
Q psy13998         74 SSNHRVQVCFPHFDLKTN-CVFL--------AF---TWPRG-IAVGP-DNS-IVVADSSNHRVQVFQS-DGTFVGKFGSM  137 (319)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~-~~~~--------~~---~~~~~-l~~~~-~g~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~  137 (319)
                      +.||.|++    .+++-. ....        ..   ..... -++.. .+. +++.+...+.|..||. .-...+.... 
T Consensus      1117 t~DG~v~~----~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~- 1191 (1431)
T KOG1240|consen 1117 TKDGSVRV----LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN- 1191 (1431)
T ss_pred             cCCCeEEE----EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-
Confidence            99999988    555321 1100        00   01111 11211 223 5666666788999983 2222222221 


Q ss_pred             CccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---Cc-EE
Q psy13998        138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NR-VI  213 (319)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~-~~  213 (319)
                         ......+++++++|.+++++.++..|.+.+||++-+      ..+..+.     ......+..+..++-   .. ..
T Consensus      1192 ---~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~-----~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1192 ---QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWE-----HPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             ---CccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeeccc-----CcccCCcceEEeeccCCCCceEE
Confidence               223367799999999999999999999999999743      2232221     112244555666642   22 33


Q ss_pred             EEeC-CCCeEEEEeCC-CCEEEEeCCCCCCc--ccc--c----Ccc-----eEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998        214 VSDS-NNHRVQIFDVN-GRVITSFGSEGSEE--GQL--K----FPR-----GVAVDDQGYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       214 v~~~-~~~~i~~~~~~-~~~~~~~~~~~~~~--~~~--~----~~~-----~i~~~~~g~~~v~~~~~~~i~~~~~~  275 (319)
                      .++. ..+.|..|+.. |.....+.......  ...  .    .|.     ..++...+.+..+++.|..|+.||..
T Consensus      1258 s~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             EecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            4444 57889999964 43333332210000  000  0    011     11222224578888899999999943

>KOG1188|consensus

Probab=99.08  E-value=8.7e-09  Score=78.04  Aligned_cols=171  Identities=13%  Similarity=0.242  Sum_probs=111.9

Q ss_pred             cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEecCCceeeecCceee
Q psy13998        110 SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       110 ~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                      ..++++..++.|++|| .+|+.+..+.      ++....+.+.|..  ....+.+++.||.|++||++...      ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~------e~a  108 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK------GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA------ESA  108 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec------CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch------hhh
Confidence            4566667789999999 5567777773      3334456777766  45778889999999999997531      111


Q ss_pred             eecccCCcCCCC-CCceeEEEcCCCcEEEEeCC----CCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCC-c
Q psy13998        187 KFGSMGNKAGQL-EHPHYIAVSNTNRVIVSDSN----NHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQG-Y  258 (319)
Q Consensus       187 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~  258 (319)
                      ++.-    ..+. ..-.+++..-.++++.++..    +-.+++||..  .+.++.+.     ..|..-++.+.|.|.. +
T Consensus       109 ~~~~----~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-----eSH~DDVT~lrFHP~~pn  179 (376)
T KOG1188|consen  109 RISW----TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-----ESHNDDVTQLRFHPSDPN  179 (376)
T ss_pred             heec----cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-----hhccCcceeEEecCCCCC
Confidence            1111    1111 12234455446678777753    5678999953  23344432     5577789999999985 7


Q ss_pred             EEEEeCCCCEEEEEcCCCc-----eEEeecccCCCCCCCCCcceEEEccCC--cEEE
Q psy13998        259 ISVGDSGNNRIQIFTPDGQ-----FLRAFGCWGSGDGEFKGLEGVAVMSNG--NILV  308 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~v  308 (319)
                      ++++++.||-|.+||.++.     ++..+       .+...+..+.|..++  +++.
T Consensus       180 lLlSGSvDGLvnlfD~~~d~EeDaL~~vi-------N~~sSI~~igw~~~~ykrI~c  229 (376)
T KOG1188|consen  180 LLLSGSVDGLVNLFDTKKDNEEDALLHVI-------NHGSSIHLIGWLSKKYKRIMC  229 (376)
T ss_pred             eEEeecccceEEeeecCCCcchhhHHHhh-------cccceeeeeeeecCCcceEEE
Confidence            9999999999999995432     22232       344567788888777  4443

>KOG0322|consensus

Probab=99.08  E-value=1.3e-09  Score=79.56  Aligned_cols=150  Identities=9%  Similarity=0.148  Sum_probs=100.8

Q ss_pred             EEEEcCCCCeEEEEcC-CCcEEEEecCC----CccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCcee
Q psy13998        111 IVVADSSNHRVQVFQS-DGTFVGKFGSM----GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV  185 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  185 (319)
                      +++++..++.+.+||. .+..+-.+...    .....+...+.++.+++.-.-=++++.+..+..|+++-.    .+.+.
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s----~gslq  242 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS----TGSLQ  242 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc----cCccc
Confidence            6677888999999994 33222222111    111344556677777764333456667778888877532    11111


Q ss_pred             eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998        186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~  264 (319)
                      ....    ..-......++.+-||++++++++-|++|++|+ .+...+..+      .-|...+++++|+|+-.++++++
T Consensus       243 ~~~e----~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL------kyHsagvn~vAfspd~~lmAaas  312 (323)
T KOG0322|consen  243 IRKE----ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL------KYHSAGVNAVAFSPDCELMAAAS  312 (323)
T ss_pred             ccce----EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh------hhhhcceeEEEeCCCCchhhhcc
Confidence            1100    011123457789999999999999999999999 566666665      45666789999999989999999


Q ss_pred             CCCEEEEEcC
Q psy13998        265 GNNRIQIFTP  274 (319)
Q Consensus       265 ~~~~i~~~~~  274 (319)
                      .|.+|.+|+.
T Consensus       313 kD~rISLWkL  322 (323)
T KOG0322|consen  313 KDARISLWKL  322 (323)
T ss_pred             CCceEEeeec
Confidence            9999999973

>KOG4227|consensus

Probab=99.07  E-value=3.7e-08  Score=76.26  Aligned_cols=245  Identities=11%  Similarity=0.126  Sum_probs=153.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC---------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE---------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPH   85 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~   85 (319)
                      ..+|.++.||-++++|+++.-+.....|...               ..|...+.+++|+..++.++++..+++|..    
T Consensus        56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~----  131 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK----  131 (609)
T ss_pred             ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe----
Confidence            4778999999999999999877666555332               123367889999988889999999999998    


Q ss_pred             cccccceeeEEec------CceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc-EEEEecCCCccCCCCCCceeEEEeC-CC
Q psy13998         86 FDLKTNCVFLAFT------WPRGIAVGPDNSIVVADSSNHRVQVFQS-DGT-FVGKFGSMGNKAGQLEHPHYIAVSN-TN  156 (319)
Q Consensus        86 ~~~~~~~~~~~~~------~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~g  156 (319)
                      -++++.+.+..+.      .+.++..+|..+++++.+.++.|.+||. +.. ....+...    ..-..-+.+.|+| .-
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A----N~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA----NSGKNFYTAEFHPETP  207 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec----CCCccceeeeecCCCc
Confidence            8888777665332      5688899999899999999999999993 221 11111110    1112336677888 44


Q ss_pred             eEEEEeCCCCEEEEEecCCce-----------------------eeecCceeeee---------cccC----------Cc
Q psy13998        157 RVIVSDSNNHRVQIFDVNGRV-----------------------FQSDGTFVGKF---------GSMG----------NK  194 (319)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~~~~-----------------------~~~~~~~~~~~---------~~~~----------~~  194 (319)
                      .++++.+..+.+-+||.+.+.                       ..+.|..+..+         ....          ..
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~  287 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP  287 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence            777777777778888875421                       11111110000         0000          00


Q ss_pred             CC--CCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC----CCEEEEeCC--------------CCCCcccccCcceEEEc
Q psy13998        195 AG--QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN----GRVITSFGS--------------EGSEEGQLKFPRGVAVD  254 (319)
Q Consensus       195 ~~--~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~----~~~~~~~~~--------------~~~~~~~~~~~~~i~~~  254 (319)
                      .+  ......+++|-. .+-+++++.+-.|++|...    .--..+++.              .....+|..-|..+.|+
T Consensus       288 ~GY~N~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~  366 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS  366 (609)
T ss_pred             Ccceeeeeeeeeeeec-ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence            00  001112333332 2336667777789999731    111111111              00124566778999999


Q ss_pred             CCCcEEEEeCCCCEEEEEcC
Q psy13998        255 DQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       255 ~~g~~~v~~~~~~~i~~~~~  274 (319)
                      +..+++++.+-.+.+.+|.+
T Consensus       367 ~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  367 QHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             CCcceEeccchhhheecccc
Confidence            99999999998999999984

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.06  E-value=1.6e-06  Score=66.67  Aligned_cols=235  Identities=16%  Similarity=0.246  Sum_probs=134.5

Q ss_pred             CCcceEEcC-CCcEEEEeCCC-CeEEEeccccccccceeeEEecCce------eeEEcCCCcEEEEcC-----CCCeEEE
Q psy13998         57 WPRGIAVGP-DNSIVVADSSN-HRVQVCFPHFDLKTNCVFLAFTWPR------GIAVGPDNSIVVADS-----SNHRVQV  123 (319)
Q Consensus        57 ~~~~v~~~~-~g~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~g~~~~~~~-----~~~~i~~  123 (319)
                      ..++++.+| .+..++.+..- ....+    ||..+......+..+.      --+|++||+++++..     ..+.|-+
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v----~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgV   81 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALV----FDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGV   81 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEE----EEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEE
Confidence            346788888 44444444433 34555    7777666665444332      257899998776643     3578999


Q ss_pred             EcCC--CcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCC------CCEEEEEecCCc-----ee-eecCceeeee
Q psy13998        124 FQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSN------NHRVQIFDVNGR-----VF-QSDGTFVGKF  188 (319)
Q Consensus       124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~------~~~i~~~~~~~~-----~~-~~~~~~~~~~  188 (319)
                      ||..  -+.+.++.      .+--.|+.+.+.||| .++|+.+.      .++. ..|+++-     .+ ..+|+++.+.
T Consensus        82 yd~~~~~~ri~E~~------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~-kLNl~tM~psL~~ld~~sG~ll~q~  154 (305)
T PF07433_consen   82 YDAARGYRRIGEFP------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRA-KLNLDTMQPSLVYLDARSGALLEQV  154 (305)
T ss_pred             EECcCCcEEEeEec------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCce-ecChhhcCCceEEEecCCCceeeee
Confidence            9954  34555663      333567899999999 55555432      1221 1222211     01 2345555443


Q ss_pred             cccCCcCCCCCCceeEEEcCCCcEEEEeCCCC-------eEEEEeCCCCEEEEeCCCCCC-cccccCcceEEEcCCCc-E
Q psy13998        189 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-------RVQIFDVNGRVITSFGSEGSE-EGQLKFPRGVAVDDQGY-I  259 (319)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~-------~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~-~  259 (319)
                      ....  ..+.....-|+++++|..++..-..+       -+..+...+. ...+...... .....++-+|+++++|. +
T Consensus       155 ~Lp~--~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i  231 (305)
T PF07433_consen  155 ELPP--DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLI  231 (305)
T ss_pred             ecCc--cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence            2211  12334577799999998877754332       2334443332 2222111100 11235678999999986 5


Q ss_pred             EEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        260 SVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       260 ~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      .+++-..+++.+|| .+|+++...        ....+.+++..+++ ++++++...
T Consensus       232 a~tsPrGg~~~~~d~~tg~~~~~~--------~l~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  232 AVTSPRGGRVAVWDAATGRLLGSV--------PLPDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             EEECCCCCEEEEEECCCCCEeecc--------ccCceeeeeecCCc-eEEeCCCcc
Confidence            56666788999998 577777655        33456667776665 566655544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.06  E-value=4.9e-08  Score=79.55  Aligned_cols=157  Identities=17%  Similarity=0.252  Sum_probs=101.5

Q ss_pred             ecCceeeEEcCCCcEEEEcCC-----------C-CeEEEEc-C--CCcEE--EEecCCCccCCCCCCceeEEEeCCCeEE
Q psy13998         97 FTWPRGIAVGPDNSIVVADSS-----------N-HRVQVFQ-S--DGTFV--GKFGSMGNKAGQLEHPHYIAVSNTNRVI  159 (319)
Q Consensus        97 ~~~~~~l~~~~~g~~~~~~~~-----------~-~~i~~~~-~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~  159 (319)
                      +..|..|+++++|++|++...           . .+|.+++ .  +|+..  ..+      ......|.++++.++| +|
T Consensus        13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf------a~~l~~p~Gi~~~~~G-ly   85 (367)
T TIGR02604        13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF------AEELSMVTGLAVAVGG-VY   85 (367)
T ss_pred             cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe------ecCCCCccceeEecCC-EE
Confidence            568999999999999999642           2 3788886 3  44432  233      2334678999999988 88


Q ss_pred             EEeCCCCEEEEE-ecCCceeee-cCc-eeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC------------------
Q psy13998        160 VSDSNNHRVQIF-DVNGRVFQS-DGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------------------  218 (319)
Q Consensus       160 ~~~~~~~~i~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~------------------  218 (319)
                      ++..  ..|..+ +.++..... ..+ ++..+....  ......+.++++.|+|.+|++...                  
T Consensus        86 V~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~--~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~  161 (367)
T TIGR02604        86 VATP--PDILFLRDKDGDDKADGEREVLLSGFGGQI--NNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG  161 (367)
T ss_pred             EeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCC--CcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence            8753  456655 444321100 111 111221100  112345788999999999997662                  


Q ss_pred             -CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEE
Q psy13998        219 -NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ  270 (319)
Q Consensus       219 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~  270 (319)
                       .+.|+.+++++.....+      ...+..|.+++++++|++|+++..+....
T Consensus       162 ~~g~i~r~~pdg~~~e~~------a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~  208 (367)
T TIGR02604       162 LGGGLFRYNPDGGKLRVV------AHGFQNPYGHSVDSWGDVFFCDNDDPPLC  208 (367)
T ss_pred             cCceEEEEecCCCeEEEE------ecCcCCCccceECCCCCEEEEccCCCcee
Confidence             15688888887666555      34467799999999999999987655443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3881|consensus

Probab=99.06  E-value=5.9e-08  Score=74.93  Aligned_cols=196  Identities=12%  Similarity=0.132  Sum_probs=125.8

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEecccccccc-----ceeeE--EecCceeeEEcCCC-cEEEEcCCC--CeEEEEcC-
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT-----NCVFL--AFTWPRGIAVGPDN-SIVVADSSN--HRVQVFQS-  126 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~--~~~~~~~l~~~~~g-~~~~~~~~~--~~i~~~~~-  126 (319)
                      +.+++.. ||. ++++-.+|.+.+    |..+.     .....  .......|--++.. .++++++..  +.+.+||. 
T Consensus       108 I~gl~~~-dg~-Litc~~sG~l~~----~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  108 IKGLKLA-DGT-LITCVSSGNLQV----RHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             ccchhhc-CCE-EEEEecCCcEEE----EeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            3444443 444 555667889999    66541     11111  11122333333333 355557666  78999994 


Q ss_pred             CCcEEEEecCCCccCCCC---CCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        127 DGTFVGKFGSMGNKAGQL---EHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      ..+.+.......+-.-.+   -.++++.|-+.  ...|++++.-+.+++||...+.     +++..+..      .....
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~------~E~~i  250 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDF------LENPI  250 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----cceeEecc------ccCcc
Confidence            444443322111101111   24467788776  6889999999999999987532     44444422      23456


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeCCCCEE-EE-eCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI-TS-FGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      +++...|.+++++++...+.+..||..+..+ .. +      .+....+.+|..+|.+.++++++.|..|+++|.+.
T Consensus       251 s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~------kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  251 SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL------KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             eeeeecCCCcEEEEecccchhheecccCceeecccc------CCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            7788999999999988899999999765443 33 3      44556789999999999999999999999999654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=6.7e-07  Score=75.00  Aligned_cols=184  Identities=13%  Similarity=0.079  Sum_probs=98.3

Q ss_pred             CceeeEEcCCCcEE-EEcCC--CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEE-EEeCCC--CEEEEEe
Q psy13998         99 WPRGIAVGPDNSIV-VADSS--NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNN--HRVQIFD  172 (319)
Q Consensus        99 ~~~~l~~~~~g~~~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~--~~i~~~~  172 (319)
                      ......|+|+|+.+ ++...  ...|++++.++.....+...   .   ......+|+|+|+.+ ++...+  ..|+++|
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~---g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---E---GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---C---CCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            34677999999744 33322  24789999554333333211   1   123457899998654 444433  3688888


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +++...       ..+.      ..........++|+|+ ++++...  ...|++++..+.....+...    +  ....
T Consensus       274 ~~~~~~-------~~lt------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~----~--~~~~  334 (430)
T PRK00178        274 LASRQL-------SRVT------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV----G--NYNA  334 (430)
T ss_pred             CCCCCe-------EEcc------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC----C--CCcc
Confidence            875321       1111      1111233467899986 4444432  34688888654434333111    1  1223


Q ss_pred             eEEEcCCCcEEE-EeCCC--CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEE-EEeCCCC
Q psy13998        250 GVAVDDQGYISV-GDSGN--NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL-VCDRENH  314 (319)
Q Consensus       250 ~i~~~~~g~~~v-~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-v~~~~~~  314 (319)
                      ...++|+|+.++ +...+  ..|.++|..+...+.+..     .  .......|+|||+++ ++...++
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-----~--~~~~~p~~spdg~~i~~~~~~~g  396 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-----T--SLDESPSVAPNGTMLIYATRQQG  396 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-----C--CCCCCceECCCCCEEEEEEecCC
Confidence            468999987544 33333  358888865544444421     1  112245799999844 4443333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=5.4e-07  Score=75.47  Aligned_cols=184  Identities=10%  Similarity=0.078  Sum_probs=96.7

Q ss_pred             CceeeEEcCCCcEEE-EcCC--CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEE-EEeCCCC--EEEEEe
Q psy13998         99 WPRGIAVGPDNSIVV-ADSS--NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNH--RVQIFD  172 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~~--~i~~~~  172 (319)
                      ......|+|||+.++ +...  ...|+++|..+.....+...   .   ......+|+|+|+.+ ++...++  .|+++|
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---P---GINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---C---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            345689999997443 3322  34688888544332333211   1   122457899999744 4444444  477778


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE-EEeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +++..      . ..+      ..+.......+++|+|+.+ ++...  ...|++++.++.....+..    .+  ....
T Consensus       293 l~tg~------~-~~l------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g--~~~~  353 (448)
T PRK04792        293 IATKA------L-TRI------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EG--EQNL  353 (448)
T ss_pred             CCCCC------e-EEC------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec----CC--CCCc
Confidence            76532      1 111      1111223456889998644 44332  3468888875443443311    11  1223


Q ss_pred             eEEEcCCCcEE-EEeCCCC--EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCC
Q psy13998        250 GVAVDDQGYIS-VGDSGNN--RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENH  314 (319)
Q Consensus       250 ~i~~~~~g~~~-v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~  314 (319)
                      ..+++|||+.+ ++...++  .|.+++.++.....+..     ..  ......|+|||+ ++++...++
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-----~~--~d~~ps~spdG~~I~~~~~~~g  415 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-----TR--LDESPSVAPNGTMVIYSTTYQG  415 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-----CC--CCCCceECCCCCEEEEEEecCC
Confidence            46899998644 4443333  57777865544444421     11  112347899998 444443443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.01  E-value=2.4e-07  Score=72.26  Aligned_cols=205  Identities=15%  Similarity=0.200  Sum_probs=120.9

Q ss_pred             CceeeEEcCCCcEEEEcCCC------------CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCC------CeEE
Q psy13998         99 WPRGIAVGPDNSIVVADSSN------------HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNT------NRVI  159 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~------------~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------g~~~  159 (319)
                      .+.++.+++.+++|+.+.+.            -+|..|| .+++.++++..+............++++..      +..|
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            35788899999999997542            3799999 677888887665443334456788888862      4689


Q ss_pred             EEeCCCCEEEEEecCCceeee--cCcee-----eeecccCCcCCCCCCceeEEEcC---CC-cEEEEeCCCCeEEEEeC-
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQS--DGTFV-----GKFGSMGNKAGQLEHPHYIAVSN---TN-RVIVSDSNNHRVQIFDV-  227 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~g-~~~v~~~~~~~i~~~~~-  227 (319)
                      +++.....|.++|+.......  .+...     ..+...+..........+++.++   ++ .+|+.......++.... 
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~  161 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS  161 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence            999999999999998642210  00000     00000111111123356677765   43 36666655566666642 


Q ss_pred             ---CCC---------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc----eEEeecccCCCCCC
Q psy13998        228 ---NGR---------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ----FLRAFGCWGSGDGE  291 (319)
Q Consensus       228 ---~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~  291 (319)
                         +..         .+..++.      ......+++++++|.+|++....+.|..|++++.    ....+...   +..
T Consensus       162 ~L~~~~~~~~~~~~~~v~~lG~------k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d---~~~  232 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDLGD------KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD---PRT  232 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEEEE---------SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE----CC-
T ss_pred             HhhCccccccccccccceeccc------cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc---Cce
Confidence               111         1111110      0124578999999999999999999999998772    22223210   233


Q ss_pred             CCCcceEEEcc--CCcEEEEeCC
Q psy13998        292 FKGLEGVAVMS--NGNILVCDRE  312 (319)
Q Consensus       292 ~~~~~~l~~~~--~g~~~v~~~~  312 (319)
                      ..+|.++.+++  +|.+|+....
T Consensus       233 l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  233 LQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             eeccceeeeccccCceEEEEECc
Confidence            77999999999  8998887643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0290|consensus

Probab=99.01  E-value=1.8e-07  Score=69.67  Aligned_cols=241  Identities=13%  Similarity=0.137  Sum_probs=142.6

Q ss_pred             CcceEEc--CCCc-EEEEeC----CCCeEEEeccccccccceeeE--Eec---CceeeEEcCCCc-----EEEEcCCCCe
Q psy13998         58 PRGIAVG--PDNS-IVVADS----SNHRVQVCFPHFDLKTNCVFL--AFT---WPRGIAVGPDNS-----IVVADSSNHR  120 (319)
Q Consensus        58 ~~~v~~~--~~g~-~~~~~~----~~~~v~~~~~~~~~~~~~~~~--~~~---~~~~l~~~~~g~-----~~~~~~~~~~  120 (319)
                      +.++.|+  ++.+ .++.++    .+++|.++.  .+..+.+...  .+.   .++.+.|.|+..     ++++.  +..
T Consensus        47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~--ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~  122 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQ--LDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF  122 (364)
T ss_pred             eeeeccccCCCcceeEEEeeeccccCCeeEEEE--EccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence            3566666  2333 344443    356777732  2222222222  122   346677877642     34433  346


Q ss_pred             EEEEcC---CCcEEEEecCCCccC-CCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        121 VQVFQS---DGTFVGKFGSMGNKA-GQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       121 i~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      +++|..   +++.........+.. .+....++..+.. +-+++.+.+-|.+..+||++...   .+.+..++      .
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---~~~vkTQL------I  193 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---SGTVKTQL------I  193 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc---ccceeeEE------E
Confidence            888873   232222211111111 1223446666665 56888899999999999987531   22222222      3


Q ss_pred             CCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeC-CCCEEEEE
Q psy13998        196 GQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDS-GNNRIQIF  272 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~-~~~~i~~~  272 (319)
                      .|-..+..++|...+ .+|++.+.||.+++||.......++..+..  ........+++++.. +++++-. ....|.+.
T Consensus       194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC--CCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            455667889998765 789999999999999975433333221111  112233567776654 3444332 45678888


Q ss_pred             c--CCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        273 T--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       273 ~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      |  ..+..+..+      .+|...+++|+|.|... .+.+++.|..+.+|
T Consensus       272 DiR~P~tpva~L------~~H~a~VNgIaWaPhS~~hictaGDD~qaliW  315 (364)
T KOG0290|consen  272 DIRVPCTPVARL------RNHQASVNGIAWAPHSSSHICTAGDDCQALIW  315 (364)
T ss_pred             EecCCCcceehh------hcCcccccceEecCCCCceeeecCCcceEEEE
Confidence            8  356677777      68999999999999865 88999999988887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=5e-07  Score=75.73  Aligned_cols=197  Identities=13%  Similarity=0.123  Sum_probs=109.0

Q ss_pred             CCCcceEEcCCCcEEEEeC-C--CCeEEEeccccccccceeeE--Eec-CceeeEEcCCCcEE-EEcCCC--CeEEEEcC
Q psy13998         56 TWPRGIAVGPDNSIVVADS-S--NHRVQVCFPHFDLKTNCVFL--AFT-WPRGIAVGPDNSIV-VADSSN--HRVQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~-~--~~~v~~~~~~~~~~~~~~~~--~~~-~~~~l~~~~~g~~~-~~~~~~--~~i~~~~~  126 (319)
                      ..+....|+|+|+.++..+ .  ...|.+    +++.++....  ... ......|+|+|+.+ ++...+  ..|+++|.
T Consensus       199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~----~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        199 EPILSPRWSPDGKRIAYVSFEQKRPRIFV----QNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             CceeeeeECCCCCEEEEEEcCCCCCEEEE----EECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            3457789999998554432 2  346888    7776543322  222 23467899999744 444333  37888996


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      .+.....+..      +........|+|+|+. +++...+  ..|+++++.+.      +. ..+...    .  .....
T Consensus       275 ~~~~~~~lt~------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------~~-~~lt~~----~--~~~~~  335 (430)
T PRK00178        275 ASRQLSRVTN------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------RA-ERVTFV----G--NYNAR  335 (430)
T ss_pred             CCCCeEEccc------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------CE-EEeecC----C--CCccc
Confidence            5554444421      1122345688998864 4443333  35777776542      21 111000    0  11223


Q ss_pred             EEEcCCCcEEEE-eCCC--CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-C--CCEEEEEcCCCc
Q psy13998        204 IAVSNTNRVIVS-DSNN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-G--NNRIQIFTPDGQ  277 (319)
Q Consensus       204 ~~~~~~g~~~v~-~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-~--~~~i~~~~~~g~  277 (319)
                      ..++|+|+.++. ...+  ..|+++|..+...+.+...       .......|+|+|+.++... .  ...|++++.+|.
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-------~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-------SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-------CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            578899865543 3322  3588899765444444211       0112457999997544333 2  346788888887


Q ss_pred             eEEee
Q psy13998        278 FLRAF  282 (319)
Q Consensus       278 ~~~~~  282 (319)
                      ..+.+
T Consensus       409 ~~~~l  413 (430)
T PRK00178        409 VRLPL  413 (430)
T ss_pred             ceEEC
Confidence            66555

>KOG0290|consensus

Probab=99.00  E-value=2.1e-07  Score=69.30  Aligned_cols=228  Identities=10%  Similarity=0.058  Sum_probs=136.3

Q ss_pred             CCCcceEEcCCCc-----EEEEeCCCCeEEEeccccccccceeeE------------EecCc-eeeEEcCC-CcEEEEcC
Q psy13998         56 TWPRGIAVGPDNS-----IVVADSSNHRVQVCFPHFDLKTNCVFL------------AFTWP-RGIAVGPD-NSIVVADS  116 (319)
Q Consensus        56 ~~~~~v~~~~~g~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~-~~l~~~~~-g~~~~~~~  116 (319)
                      ..++.+.|.|+.+     ++++  .+..+++    |.........            ++..| ++..++.- -+++.+.+
T Consensus        97 YP~tK~~wiPd~~g~~pdlLAT--s~D~LRl----Wri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   97 YPVTKLMWIPDSKGVYPDLLAT--SSDFLRL----WRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCccceEecCCccccCcchhhc--ccCeEEE----EeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            4567888888753     4444  3458888    6664322111            22222 44445432 35778888


Q ss_pred             CCCeEEEEc-CCC---cEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998        117 SNHRVQVFQ-SDG---TFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       117 ~~~~i~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                      -|-+-.+|| ..|   .+...+      ..|...+.+++|...+ .+|++.+.||.+++||++....+   +.+..-   
T Consensus       171 iDTTCTiWdie~~~~~~vkTQL------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS---TIIYE~---  238 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQL------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS---TIIYED---  238 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEE------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc---eEEecC---
Confidence            888999999 443   222333      4577889999999855 78999999999999999853211   111111   


Q ss_pred             CCcCCCCCCceeEEEcCCC-cEEEEe-CCCCeEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCC
Q psy13998        192 GNKAGQLEHPHYIAVSNTN-RVIVSD-SNNHRVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGN  266 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~g-~~~v~~-~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~  266 (319)
                         +........+++++.. +++++- .....|.+.|.  ....+.++      .+|...+++|++.|.. ..+++++.|
T Consensus       239 ---p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L------~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  239 ---PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL------RNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             ---CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh------hcCcccccceEecCCCCceeeecCCc
Confidence               1111122346666544 333332 23467888885  35566666      6788889999999984 688899999


Q ss_pred             CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEe
Q psy13998        267 NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCD  310 (319)
Q Consensus       267 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~  310 (319)
                      ..+.+||..-........+-..-.....++.|.|++... .++..
T Consensus       310 ~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  310 CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             ceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEE
Confidence            999999954221111110000011234578888885433 44333

>KOG1334|consensus

Probab=99.00  E-value=2.9e-08  Score=78.80  Aligned_cols=257  Identities=16%  Similarity=0.185  Sum_probs=159.9

Q ss_pred             eecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCC--CcEEEEcC
Q psy13998         44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPD--NSIVVADS  116 (319)
Q Consensus        44 ~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~--g~~~~~~~  116 (319)
                      ++.......+|...+..|.|...|.++++++.+..|.+    |+..+......+     ..+..-.|-|.  .+-+++++
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~----WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVV----WDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEe----ehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence            34555566778899999999999999999999999999    666545444422     22322334443  34567777


Q ss_pred             CCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        117 SNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       117 ~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      .++.+++=.  .++.+..... .   ..|...++.+++.|+. +-|.+++.++.+.-+|++......  .+....    .
T Consensus       207 ~dgqvr~s~i~~t~~~e~t~r-l---~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~--~~~cr~----~  276 (559)
T KOG1334|consen  207 RDGQVRVSEILETGYVENTKR-L---APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE--KFVCRE----A  276 (559)
T ss_pred             ccCceeeeeeccccceeccee-c---ccccCccceeeecCCCCCcccccccccceeeeeeccCCccc--eeeeec----c
Confidence            888877655  3443321111 1   3455677889999854 778899999999988887532111  111110    0


Q ss_pred             cCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCC-------CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        194 KAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNG-------RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                      ........+.++++|.+ +.+.++..+..+++||...       ..+..+-...........+++++++-++.-+.+...
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence            01111245778999876 4777888888888888421       112222211111233345789999977665566678


Q ss_pred             CCEEEEEcCC---C----------ceEEeecccCCCCCCC--CCcceEEE-ccCCcEEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFTPD---G----------QFLRAFGCWGSGDGEF--KGLEGVAV-MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~~~---g----------~~~~~~~~~~~~~~~~--~~~~~l~~-~~~g~~~v~~~~~~~i~v~  319 (319)
                      +-.|++|+++   |          ..+..     ..++|.  ..+.++-| .|...++++|+.-|.|-+|
T Consensus       357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~-----vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW  421 (559)
T KOG1334|consen  357 DEDIYLFNKSMGDGSEPDPSSPREQYVKR-----VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIW  421 (559)
T ss_pred             ccceEEeccccccCCCCCCCcchhhccch-----hhcccccccccceeeeccCccceEEecCccceEEEE
Confidence            8899999843   4          11111     013332  33566655 4777899999999999888

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.98  E-value=1.5e-06  Score=69.30  Aligned_cols=166  Identities=11%  Similarity=0.129  Sum_probs=107.0

Q ss_pred             CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC-EEEEEecCCceeeecCceee
Q psy13998        108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-RVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       108 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~  186 (319)
                      +|++++..+ .++..+.+..+...-.+...       ..+....+..+++-++.+..++ .+.+|+.++.       .+.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~-------~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------e~k  395 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQVGKK-------GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------EVK  395 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEEcCCC-------CceEEEEEccCCcceEEeccCCceEEEEecCCc-------eEE
Confidence            466665554 35677777655544444322       2344444444455556666665 8999998864       222


Q ss_pred             eecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-
Q psy13998        187 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-  265 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-  265 (319)
                      ++      ...+..+..+.++++|+.++++.....+.++|.+...++.+.     ......+..++|+|++++++-+-- 
T Consensus       396 r~------e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYafP~  464 (668)
T COG4946         396 RI------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYAFPE  464 (668)
T ss_pred             Ee------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEecCc
Confidence            33      344567788999999998888888889999997655555542     234456889999999988776544 


Q ss_pred             ---CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        266 ---NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       266 ---~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                         ...|+++|.+|..+....      .....-.+-+|+|||+
T Consensus       465 gy~tq~Iklydm~~~Kiy~vT------T~ta~DfsPaFD~d~r  501 (668)
T COG4946         465 GYYTQSIKLYDMDGGKIYDVT------TPTAYDFSPAFDPDGR  501 (668)
T ss_pred             ceeeeeEEEEecCCCeEEEec------CCcccccCcccCCCCc
Confidence               357899997764444442      2222334457899998

>KOG1240|consensus

Probab=98.95  E-value=6.6e-07  Score=79.16  Aligned_cols=244  Identities=15%  Similarity=0.129  Sum_probs=136.4

Q ss_pred             CCCcceEEcCC-CcEEEEeCCCCeEEEeccccccccc----eeeE---Ee----cCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         56 TWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTN----CVFL---AF----TWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        56 ~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~----~~~~---~~----~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      ..+..++.++. +.+|++++.||+|++    |+...-    +...   .+    .....+.+.+.++.|+.++.||.|.+
T Consensus      1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKv----W~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKV----WNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             ccccceeecCCCCceEEEecCCceEEE----eeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence            45567777764 489999999999999    776421    1111   11    24456777788888888899999998


Q ss_pred             EcCCC---cE-EEEecCCCccCCCCCCceeE-EEeC-CCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        124 FQSDG---TF-VGKFGSMGNKAGQLEHPHYI-AVSN-TNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       124 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~l-~~~~-~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      ...+-   +. ........+ ......+.++ ++.. .+. .++.....+.|..||.+...      ...+..    ...
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n-~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~------~~w~lk----~~~ 1193 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPN-LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH------DAWRLK----NQL 1193 (1431)
T ss_pred             EEccccccccceeeeeeccc-ccCCCceEEeecccccccceeEEEEEeccceEEecchhhh------hHHhhh----cCc
Confidence            87432   11 111000000 0000111111 2222 223 56666677889999987531      111110    022


Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcCCC---cE-EEEeC-CCCEEE
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDDQG---YI-SVGDS-GNNRIQ  270 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g---~~-~v~~~-~~~~i~  270 (319)
                      ....+++++++|.+..++.+...|.+..||..-+ .+..+.     ......+..+..+|--   .. ..++. ..+.|.
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-----HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc-----CcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence            3345788999999999999999999999997643 344432     1223456677766542   23 33334 578899


Q ss_pred             EEcC-CCceEEeeccc-C---------CC---CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        271 IFTP-DGQFLRAFGCW-G---------SG---DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       271 ~~~~-~g~~~~~~~~~-~---------~~---~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .|+. .|.....+-.. +         ..   ..+.......++..-+.++.+++.|..||.|
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeec
Confidence            9994 44222222110 0         00   0000001112222233488899999999988

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.94  E-value=6.2e-06  Score=67.84  Aligned_cols=107  Identities=16%  Similarity=0.260  Sum_probs=65.0

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeE---------EecCceeeEEcCCC-------cEEEE
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFL---------AFTWPRGIAVGPDN-------SIVVA  114 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~---------~~~~~~~l~~~~~g-------~~~~~  114 (319)
                      ..+..|++|++.|+|++||+....|+|++    ++..+..  ...         ....+.+|+++|+-       .+|++
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~----v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILR----VNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEE----EeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            34889999999999999999876789998    5443221  111         12356889998763       36666


Q ss_pred             cC---------CCCeEEEEcCC--C-c---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998        115 DS---------SNHRVQVFQSD--G-T---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus       115 ~~---------~~~~i~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      -+         ....|..|..+  + .   ....+...  .....+.-..|+|.|||.+|++.+..
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~l--P~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGL--PAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecC--CCCCCcCCceEEECCCCcEEEEECCC
Confidence            31         13467666532  1 1   11111111  01112344678999999999976543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.93  E-value=1.4e-06  Score=65.58  Aligned_cols=216  Identities=16%  Similarity=0.199  Sum_probs=126.0

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCC-CCeEEEeccccccccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEE
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSS-NHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVF  124 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~  124 (319)
                      ..|....+.+++++|+.+.+++-.. ...|..    .+. .+..+.     .+..|.+|++..+|++.+++..+.+++++
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVE----lt~-~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVE----LTK-EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEE----Eec-CCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEE
Confidence            3455667999999998885555443 333333    232 133333     34577889999888888899889998888


Q ss_pred             c--CCCcEEEE----ecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        125 Q--SDGTFVGK----FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       125 ~--~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      .  .++..+..    +.. +........-.++++++.+..++..-+.+-+.+|...+..-........  .......-..
T Consensus       156 ~vd~~t~~~~~~~~~i~L-~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~--~~~~~~~~f~  232 (316)
T COG3204         156 TVDADTTVISAKVQKIPL-GTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL--DPTADRDLFV  232 (316)
T ss_pred             EEcCCccEEeccceEEec-cccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc--CcccccceEe
Confidence            7  34333221    111 1111123456899999965444444455555555443211000000000  0000000113


Q ss_pred             CCceeEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC---CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        199 EHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS---EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       199 ~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ...+++.+++ .+.++|....++.+...|.+|..+..+.....   .......+.+|+.+.+|.+|++. .-+-.+.|.+
T Consensus       233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS-EPnlfy~F~~  311 (316)
T COG3204         233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS-EPNLFYRFTP  311 (316)
T ss_pred             eccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe-cCCcceeccc
Confidence            3467788885 56888988899999999999987555432211   12234567899999999999885 4455666654


Q ss_pred             C
Q psy13998        275 D  275 (319)
Q Consensus       275 ~  275 (319)
                      +
T Consensus       312 ~  312 (316)
T COG3204         312 Q  312 (316)
T ss_pred             C
Confidence            3

>KOG4547|consensus

Probab=98.93  E-value=7.7e-07  Score=72.54  Aligned_cols=187  Identities=12%  Similarity=0.211  Sum_probs=120.3

Q ss_pred             CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCC-CCceeEEEe----------------CCCeEEEEeCCCCEEE
Q psy13998        108 DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQL-EHPHYIAVS----------------NTNRVIVSDSNNHRVQ  169 (319)
Q Consensus       108 ~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~----------------~~g~~~~~~~~~~~i~  169 (319)
                      ...+++....++.+++|+ ..++....+.......+.. ....++...                .+-..++-+...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            346777788899999999 6777666664332211110 111112111                1234667777888899


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~  248 (319)
                      .|+..+.      ++...+..    ..|......+....+-..+.+.+.+..+..|+.. ...++.+      ......+
T Consensus        84 ~ys~~~g------~it~~~st----~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~------~~~~~~~  147 (541)
T KOG4547|consen   84 LYSVAGG------EITAKLST----DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW------KEQKPLV  147 (541)
T ss_pred             EEEecCC------eEEEEEec----CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee------ccCCCcc
Confidence            8887643      33333321    2344455555555555667777789999999964 4555555      4444567


Q ss_pred             ceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccC-----CcEEEEe-CCCCeEEe
Q psy13998        249 RGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSN-----GNILVCD-RENHRIQV  318 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~-----g~~~v~~-~~~~~i~v  318 (319)
                      .+++++|||.++++++  +.|.+|+ .+++.+..+      .+|...++.+.|..+     |.++.+. ....-|.+
T Consensus       148 ~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  148 SSLCISPDGKILLTAS--RQIKVLDIETKEVVITF------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             ceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe------cCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence            8999999999988876  6899999 578888898      788889999988766     6644443 33333433

>KOG1354|consensus

Probab=98.92  E-value=9.5e-08  Score=72.76  Aligned_cols=255  Identities=11%  Similarity=0.115  Sum_probs=150.2

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--e--E-E-------ec---------CceeeEEcCCC--cE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--F--L-A-------FT---------WPRGIAVGPDN--SI  111 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~--~-~-------~~---------~~~~l~~~~~g--~~  111 (319)
                      -+.+.+|.|+..|+++++|..+|+|.+    |.......  .  . .       +.         .+..+.+.+++  ..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~----f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVL----FEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEE----eecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            356789999999999999999999998    65432221  1  1 1       11         23567777665  36


Q ss_pred             EEEcCCCCeEEEEcCCCcEEEE---------------------ecC----------CCccCCCCCCceeEEEeCCCeEEE
Q psy13998        112 VVADSSNHRVQVFQSDGTFVGK---------------------FGS----------MGNKAGQLEHPHYIAVSNTNRVIV  160 (319)
Q Consensus       112 ~~~~~~~~~i~~~~~~~~~~~~---------------------~~~----------~~~~~~~~~~~~~l~~~~~g~~~~  160 (319)
                      |+..+.+.+|++|....+..+.                     +..          ......|...+++|.+..|+..|+
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            7777788999999722111100                     000          001234555678888888888888


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEE-----EE
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVI-----TS  234 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~-----~~  234 (319)
                      ++ .+=+|.+|+++-  ....-..+..  ...........+++..|+|.. ++++-.+..|.|++.|+....+     +.
T Consensus       181 SA-DdLRINLWnlei--~d~sFnIVDI--KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEI--IDQSFNIVDI--KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             ec-cceeeeeccccc--cCCceeEEEc--cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence            75 567899998762  1100011110  000111112234556677754 6777777889999999652211     11


Q ss_pred             e--CCCCC----CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC--CCceEEeecccCCC---------CCCCCCcce
Q psy13998        235 F--GSEGS----EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP--DGQFLRAFGCWGSG---------DGEFKGLEG  297 (319)
Q Consensus       235 ~--~~~~~----~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~---------~~~~~~~~~  297 (319)
                      +  ...+.    ..+....+..+.|+.+|+++++- .--+|.+||.  +.+.+.++......         ..-...-..
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence            1  11111    11223457789999999887774 3468999994  56666555211000         000011245


Q ss_pred             EEEccCCcEEEEeCCCCeEEeC
Q psy13998        298 VAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++|+.++....+|+.++..++|
T Consensus       335 c~~sg~~~~v~TGsy~n~frvf  356 (433)
T KOG1354|consen  335 CSWSGNDSYVMTGSYNNVFRVF  356 (433)
T ss_pred             EEEcCCcceEecccccceEEEe
Confidence            7888888899999999888876

>KOG1520|consensus

Probab=98.92  E-value=7.1e-07  Score=69.84  Aligned_cols=149  Identities=17%  Similarity=0.244  Sum_probs=93.0

Q ss_pred             cCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----------
Q psy13998         98 TWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----------  165 (319)
Q Consensus        98 ~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----------  165 (319)
                      ..|.+++++..+ ++|+++..-| +...++.|+....+..... .......+++.++++|.+|++++.+           
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~-G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~  192 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAE-GKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAA  192 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceecccccc-CeeeeecCceeEcCCCeEEEeccccccchhheEEee
Confidence            478999999887 8999987664 6667766665443322111 1122345788999999999998754           


Q ss_pred             ------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE-EEeCCCCeEEEEeCCCCEEEEeCCC
Q psy13998        166 ------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVITSFGSE  238 (319)
Q Consensus       166 ------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~i~~~~~~~~~~~~~~~~  238 (319)
                            |++..||..++       ....      ....+..|+++++++++.++ ++.....+|..|-..|....+.  +
T Consensus       193 l~g~~~GRl~~YD~~tK-------~~~V------Lld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~--E  257 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTK-------VTKV------LLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTS--E  257 (376)
T ss_pred             ecCCCccceEEecCccc-------chhh------hhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCch--h
Confidence                  22233332221       1111      13456789999999998655 5555666787776665443211  0


Q ss_pred             CCCcccccCcceEEEcCCCcEEEEe
Q psy13998        239 GSEEGQLKFPRGVAVDDQGYISVGD  263 (319)
Q Consensus       239 ~~~~~~~~~~~~i~~~~~g~~~v~~  263 (319)
                      ....+-...|..|..+++|.+||+-
T Consensus       258 vFa~~LPG~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  258 VFAEGLPGYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             hHhhcCCCCCcceeECCCCCEEEEE
Confidence            0012234568889999999998876

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=3.3e-06  Score=70.32  Aligned_cols=197  Identities=9%  Similarity=0.029  Sum_probs=100.6

Q ss_pred             cceEEcCCCcE--E-EEeCCC--CeEEEecccccccccee--eEEec-CceeeEEcCCCcEE-EEcCCCC--eEEE--Ec
Q psy13998         59 RGIAVGPDNSI--V-VADSSN--HRVQVCFPHFDLKTNCV--FLAFT-WPRGIAVGPDNSIV-VADSSNH--RVQV--FQ  125 (319)
Q Consensus        59 ~~v~~~~~g~~--~-~~~~~~--~~v~~~~~~~~~~~~~~--~~~~~-~~~~l~~~~~g~~~-~~~~~~~--~i~~--~~  125 (319)
                      ..-.|+|||+.  + +....+  ..|.+    .++.++..  +..+. .....+|+|||+.+ ++....+  .+++  |+
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~----~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFL----GSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEE----EECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence            45589999862  2 233333  45666    56654332  22222 33457899999644 3332222  3333  55


Q ss_pred             CC----CcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCC--EEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        126 SD----GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       126 ~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      ..    ++......      .........+|+|||+. +++...++  .+.++++++.     +.....+.      ...
T Consensus       264 ~~~g~~g~~~~lt~------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~-----g~~~~~lt------~~~  326 (428)
T PRK01029        264 LETGAIGKPRRLLN------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE-----GQSPRLLT------KKY  326 (428)
T ss_pred             cccCCCCcceEeec------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc-----ccceEEec------cCC
Confidence            22    22222221      11122345789999974 44443344  4555554321     11111111      111


Q ss_pred             CCceeEEEcCCCcEEE-EeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-EeC--CCCEEEEE
Q psy13998        199 EHPHYIAVSNTNRVIV-SDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GDS--GNNRIQIF  272 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~~--~~~~i~~~  272 (319)
                      .......++|+|+.++ +...  ...|++||.++...+.+..      .........|+|||+.++ +..  ....|+++
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT------SPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC------CCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            2234578999997554 3332  3479999986655555421      112345678999997443 433  34678889


Q ss_pred             cCCCceEEee
Q psy13998        273 TPDGQFLRAF  282 (319)
Q Consensus       273 ~~~g~~~~~~  282 (319)
                      +.++.....+
T Consensus       401 dl~~g~~~~L  410 (428)
T PRK01029        401 SLITKKTRKI  410 (428)
T ss_pred             ECCCCCEEEe
Confidence            9766544444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=5.2e-06  Score=69.17  Aligned_cols=184  Identities=7%  Similarity=-0.025  Sum_probs=93.5

Q ss_pred             eeeEEcCCCc---EEEEcCC--CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-EeCCCC--EEE--E
Q psy13998        101 RGIAVGPDNS---IVVADSS--NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNNH--RVQ--I  170 (319)
Q Consensus       101 ~~l~~~~~g~---~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~~~~~~--~i~--~  170 (319)
                      ..-.|+|||+   +++....  ...|++.+.++.....+...   .   ......+|+|||+.++ +....+  .+.  .
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~---g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---Q---GNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---C---CCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            4458999985   2223333  34688888655433333211   1   1224578999995544 332222  233  3


Q ss_pred             EecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCC--eEEEEeCC--CCEEEEeCCCCCCcccc
Q psy13998        171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNH--RVQIFDVN--GRVITSFGSEGSEEGQL  245 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~--~i~~~~~~--~~~~~~~~~~~~~~~~~  245 (319)
                      |++.+..   .+......      ..........+++|+|+ ++++...++  .|++++.+  +.....+.      ...
T Consensus       262 ~~~~~g~---~g~~~~lt------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt------~~~  326 (428)
T PRK01029        262 FSLETGA---IGKPRRLL------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT------KKY  326 (428)
T ss_pred             eecccCC---CCcceEee------cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec------cCC
Confidence            4543210   01111111      01111223468999997 444443333  56776653  33333331      111


Q ss_pred             cCcceEEEcCCCcEEE-EeCC--CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcE-EEEeC
Q psy13998        246 KFPRGVAVDDQGYISV-GDSG--NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNI-LVCDR  311 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v-~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~v~~~  311 (319)
                      .......++|||+.++ +...  ...|++|+.++...+.+.      ..........|+|||+. +++..
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt------~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT------TSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc------CCCCCccceEECCCCCEEEEEEC
Confidence            2345678999997544 3332  347999997655445442      11224566889999984 44443

>KOG0974|consensus

Probab=98.88  E-value=1.8e-07  Score=80.98  Aligned_cols=185  Identities=15%  Similarity=0.149  Sum_probs=125.1

Q ss_pred             CCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCcee
Q psy13998        108 DNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV  185 (319)
Q Consensus       108 ~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  185 (319)
                      +.+.++....++.+.+|+. .+.....+...   ......+..+..+. +.-..++++--+.|.+|+....     ....
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~---er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-----n~p~  169 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSD---ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-----NKPI  169 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCC---ceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-----CCcc
Confidence            3333444445668888884 44444444221   11111122222233 3344455667789999987621     1111


Q ss_pred             eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                             ...+|...+..+.++.+|+++++.+.|..+++|+.+......    ...-+|...+..+++.|.  .+++.+.
T Consensus       170 -------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n--~i~t~ge  236 (967)
T KOG0974|consen  170 -------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN--RIITVGE  236 (967)
T ss_pred             -------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----cccccccceeEEEEeccc--eeEEecc
Confidence                   125667778889999999999999999999999975433211    111456778899999987  7788899


Q ss_pred             CCEEEEEcCCCceEEeecccCCCCCC-CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFTPDGQFLRAFGCWGSGDGE-FKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~~~g~~~~~~~~~~~~~~~-~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |.+.++|+.+++.+..+      .+| ...++.+++.++..+.++++.|+.+++|
T Consensus       237 dctcrvW~~~~~~l~~y------~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  237 DCTCRVWGVNGTQLEVY------DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             ceEEEEEecccceehhh------hhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence            99999999999888866      344 3568999999888899999999999887

>KOG1409|consensus

Probab=98.84  E-value=6.4e-07  Score=68.36  Aligned_cols=239  Identities=11%  Similarity=0.122  Sum_probs=148.3

Q ss_pred             CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc-cceeeEE-----ecCceeeEEcCCCcEEEEcCCCCeEE
Q psy13998         49 GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK-TNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQ  122 (319)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~-----~~~~~~l~~~~~g~~~~~~~~~~~i~  122 (319)
                      ....|+++.++....-|...-+++.+.|.++++    |-.. .++....     ...+..+.+.++-..++.+..++.+.
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv----~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRV----WLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeee----EEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            344677888888777776666888899999999    5332 2332221     12457788888878888888889888


Q ss_pred             EEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        123 VFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       123 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      -+...  -+.....   ..-..|...+..+.++....++++.+.|..+.---.+      .+..+..+.       ....
T Consensus        94 efs~sedfnkm~~~---r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e------~~~~lg~Y~-------~~~~  157 (404)
T KOG1409|consen   94 EFALSEDFNKMTFL---KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE------SGNRLGGYN-------FETP  157 (404)
T ss_pred             EEEhhhhhhhcchh---hhhhhhhcceeeEEecCCceeEEEeccccceEEEeec------cCCcccceE-------eecc
Confidence            88722  1111111   1114566777888888878888888877765422111      111111110       0011


Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEE--e-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIF--D-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~  277 (319)
                      +.++.++-.  +-..+...+.|...  . ..-..+.++      .++...+..+++++...+++++..+.++.+||..|.
T Consensus       158 ~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~------~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  158 ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTF------NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             CCCCceeeE--EEEecccccceEEEEEeecCCceEEEE------cCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence            122222222  22333334444332  2 233455666      677778899999999999999999999999997655


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .-..+..    .++...+..+...+--+.+++.+.|+.|.+|
T Consensus       230 ~g~~~el----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  230 KGTAYEL----QGHNDKVQALSYAQHTRQLISCGEDGGIVVW  267 (404)
T ss_pred             cceeeee----ccchhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence            4333322    4566677777776666778888888888887

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.78  E-value=4.5e-07  Score=72.64  Aligned_cols=173  Identities=21%  Similarity=0.253  Sum_probs=95.8

Q ss_pred             ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEe-cCCCccCCCCCCceeEEEeCC----CeEEEEeCCC------
Q psy13998         97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKF-GSMGNKAGQLEHPHYIAVSNT----NRVIVSDSNN------  165 (319)
Q Consensus        97 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~----g~~~~~~~~~------  165 (319)
                      +..|.+|++.|+|++|++.. .++|++++.++.....+ ..............+++++|+    +.+|++-+..      
T Consensus         1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCCceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            45789999999999999876 89999999776651111 111111233456789999994    7777765532      


Q ss_pred             --CEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeCC
Q psy13998        166 --HRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVN  228 (319)
Q Consensus       166 --~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~~  228 (319)
                        ..|..|.....  .......++.....   ..........|++.|+|.||++...             .+.|..++.+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~---~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPD---TSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES----CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCC---CCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence              35665655432  11111112222211   0112334466999999999987543             3567777776


Q ss_pred             CCEEEEeCCC---CCC----cccccCcceEEEcCC-CcEEEEeCCCC---EEEEEc
Q psy13998        229 GRVITSFGSE---GSE----EGQLKFPRGVAVDDQ-GYISVGDSGNN---RIQIFT  273 (319)
Q Consensus       229 ~~~~~~~~~~---~~~----~~~~~~~~~i~~~~~-g~~~v~~~~~~---~i~~~~  273 (319)
                      |.....-...   ...    ...+..|.+++|+|. |++|++.....   .|.+..
T Consensus       157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~  212 (331)
T PF07995_consen  157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE  212 (331)
T ss_dssp             SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-
T ss_pred             CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec
Confidence            6421110000   000    113456889999999 99999886543   444443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=4.4e-05  Score=63.35  Aligned_cols=177  Identities=8%  Similarity=0.081  Sum_probs=95.5

Q ss_pred             ceeeEEcCCCc--EEEEcCC--CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCC--CCEEEEEe
Q psy13998        100 PRGIAVGPDNS--IVVADSS--NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSN--NHRVQIFD  172 (319)
Q Consensus       100 ~~~l~~~~~g~--~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~--~~~i~~~~  172 (319)
                      .....|+|+|+  ++++...  ...|+++|..+.....+...   .   .......|+|||+ ++++...  +..|.+++
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~---g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---Q---GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---C---CcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            34678999986  4444333  46799999544333333211   1   2224567899985 4444433  35688888


Q ss_pred             cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +.+..       ...+...   ..   ......++|+|+ ++++...  ...|++++.++....++...    +.    .
T Consensus       264 l~~g~-------~~~LT~~---~~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g~----~  322 (419)
T PRK04043        264 TNTKT-------LTQITNY---PG---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----GK----N  322 (419)
T ss_pred             CCCCc-------EEEcccC---CC---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----CC----c
Confidence            76532       1111100   00   112246899995 5555432  23788899766554444211    11    1


Q ss_pred             eEEEcCCCcEEEEe-CCC--------CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEe
Q psy13998        250 GVAVDDQGYISVGD-SGN--------NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCD  310 (319)
Q Consensus       250 ~i~~~~~g~~~v~~-~~~--------~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~  310 (319)
                      ...++|+|+.++.. ...        ..|++++.++...+.+..     .  ..-....|+|||+ ++++.
T Consensus       323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-----~--~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-----N--GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-----C--CCcCCeEECCCCCEEEEEE
Confidence            23899999744433 322        478888866555555522     1  1223468999998 43433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.77  E-value=3.3e-06  Score=76.29  Aligned_cols=235  Identities=12%  Similarity=0.088  Sum_probs=139.6

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEecccc----cccc--ceeeEEec-CceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHF----DLKT--NCVFLAFT-WPRGIAVGPDNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~----~~~~--~~~~~~~~-~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      ..+.++.+-++...++....+|.|..    +    +..+  -+.+..+. .+.+++|+||+.+++..++++++.+.+.+-
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~----~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIIL----VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEE----EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            56778888888776677777888888    4    3322  22233333 789999999999888888888999988777


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecC-Cceee---ecCceeeeecccCCcCCCCCCceeE
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVFQ---SDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      .++.+........             .....++.+..++=.-|.-. |+...   .+.+.. .. ..+... .......+
T Consensus       152 d~i~E~~l~~~~~-------------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~-~~-d~~~~s-~dd~~~~I  215 (928)
T PF04762_consen  152 DPISEVPLDSDDF-------------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP-KV-DEGKLS-WDDGRVRI  215 (928)
T ss_pred             eEEEEeecCcccc-------------CCCceeeeccCcccCccCcchhhhhhhhccCCCCC-cc-ccCccc-cCCCceEE
Confidence            7776653221111             11223333222211111100 00000   000000 00 001111 22234558


Q ss_pred             EEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC---CCEEEEEcCC
Q psy13998        205 AVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG---NNRIQIFTPD  275 (319)
Q Consensus       205 ~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~---~~~i~~~~~~  275 (319)
                      +|-.||.+|++.+.      ...+++|+.+|.....-. .   ..  .--..++|-|.|+++++...   ...|..|.++
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE-~---v~--gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN  289 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSE-P---VD--GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN  289 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccc-c---CC--CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence            88889998877653      357999999987544331 1   11  11346899999998877653   4688999999


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |-.-..+...-  ......+..|.|++|+.+++.--.+. |++|
T Consensus       290 GLrhgeF~l~~--~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW  330 (928)
T PF04762_consen  290 GLRHGEFTLRF--DPEEEKVIELAWNSDSEILAVWLEDR-VQLW  330 (928)
T ss_pred             CcEeeeEecCC--CCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence            97776664322  12344679999999999888766544 8877

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.74  E-value=4.1e-06  Score=65.49  Aligned_cols=195  Identities=15%  Similarity=0.236  Sum_probs=110.9

Q ss_pred             CCcceEEcCCCcEEEEeCCC------------CeEEEeccccccccceeeEEec----------CceeeEEcCC------
Q psy13998         57 WPRGIAVGPDNSIVVADSSN------------HRVQVCFPHFDLKTNCVFLAFT----------WPRGIAVGPD------  108 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~------  108 (319)
                      .|.++.+++.|++|+.+++.            -+|.+    ||+.+++.++.+.          ....+.++..      
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~----~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~   77 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVA----FDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDD   77 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEE----EETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-S
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEE----EECCCCcEEEEEECChHHcccccccceEEEEccCCCCcc
Confidence            46789999999999998642            37888    9999988777443          3356777652      


Q ss_pred             CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC-------------CCCCCceeEEEeC---CC-eEEEEeCCCCEEEE
Q psy13998        109 NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA-------------GQLEHPHYIAVSN---TN-RVIVSDSNNHRVQI  170 (319)
Q Consensus       109 g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~---~g-~~~~~~~~~~~i~~  170 (319)
                      +-.|+++.....|.++| .+++..+.....-...             .....+.+++.++   ++ .+|+..-....++.
T Consensus        78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~  157 (287)
T PF03022_consen   78 GFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYR  157 (287)
T ss_dssp             EEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEE
T ss_pred             eEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEE
Confidence            35899999989999999 4555444332110000             0011244555554   33 34555444444443


Q ss_pred             EecC---CceeeecC---ceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC----EEEEeCCCCC
Q psy13998        171 FDVN---GRVFQSDG---TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR----VITSFGSEGS  240 (319)
Q Consensus       171 ~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~----~~~~~~~~~~  240 (319)
                      ....   ........   ..+..++.      ......+++++++|.+|++....+.|..|++++.    ....+...  
T Consensus       158 v~T~~L~~~~~~~~~~~~~~v~~lG~------k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d--  229 (287)
T PF03022_consen  158 VPTSVLRDPSLSDAQALASQVQDLGD------KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD--  229 (287)
T ss_dssp             EEHHHHCSTT--HHH-HHHT-EEEEE---------SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---
T ss_pred             EEHHHhhCccccccccccccceeccc------cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc--
Confidence            3221   00000000   00011100      0134567999999999999999999999998861    12222111  


Q ss_pred             CcccccCcceEEEcC--CCcEEEEeC
Q psy13998        241 EEGQLKFPRGVAVDD--QGYISVGDS  264 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~--~g~~~v~~~  264 (319)
                       ...+.+|.++.+++  +|.+|+...
T Consensus       230 -~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  230 -PRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             -CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             -CceeeccceeeeccccCceEEEEEC
Confidence             23478999999999  899999874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1520|consensus

Probab=98.72  E-value=1.1e-06  Score=68.86  Aligned_cols=150  Identities=17%  Similarity=0.215  Sum_probs=95.7

Q ss_pred             CCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC----
Q psy13998        144 LEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN----  218 (319)
Q Consensus       144 ~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~----  218 (319)
                      ..+|-+|+++..+ ++|+++..-| +...+..+.....   .....  .   -......+++.++++|.+|++++.    
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~---l~~~~--~---G~~~kf~N~ldI~~~g~vyFTDSSsk~~  184 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAEL---LADEA--E---GKPFKFLNDLDIDPEGVVYFTDSSSKYD  184 (376)
T ss_pred             cCCcceEEeccCCCeEEEEeccee-eEEECCCCCccee---ccccc--c---CeeeeecCceeEcCCCeEEEeccccccc
Confidence            4789999999866 9999886544 4445555432110   00000  0   011223466888888888888764    


Q ss_pred             -------------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCceEEeecc
Q psy13998        219 -------------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQFLRAFGC  284 (319)
Q Consensus       219 -------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~~~~~~~~  284 (319)
                                   +|++..||+..+..+.+      ...+..|++++.+||+. ++++.....+|+.|-..|....+.+.
T Consensus       185 ~rd~~~a~l~g~~~GRl~~YD~~tK~~~VL------ld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~Ev  258 (376)
T KOG1520|consen  185 RRDFVFAALEGDPTGRLFRYDPSTKVTKVL------LDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEV  258 (376)
T ss_pred             hhheEEeeecCCCccceEEecCcccchhhh------hhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhh
Confidence                         35667777665555555      55678899999999986 56677777788888765544422111


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      ..  .+-...|..|..+++|.+||+-
T Consensus       259 Fa--~~LPG~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  259 FA--EGLPGYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             Hh--hcCCCCCcceeECCCCCEEEEE
Confidence            00  2344578889999999988765

>KOG2321|consensus

Probab=98.72  E-value=5.6e-06  Score=67.68  Aligned_cols=231  Identities=11%  Similarity=0.189  Sum_probs=129.6

Q ss_pred             CCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceee--EEec-CceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEE
Q psy13998         57 WPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVF--LAFT-WPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        57 ~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~-~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      .-+.|.++|||++ ++++...-.|++    |++..-...  .++. .+..+.+-.+. .-.+--..+..|-.-..-|...
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikv----ydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKV----YDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEE----EEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            3467999999995 555666778999    887432211  1222 22222222221 1111112244454444444322


Q ss_pred             E-EecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        132 G-KFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       132 ~-~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      . .+..         .-.+++++. +-.+|+.++ ...|+.++++      .|.++..+..      .....+.+.+++.
T Consensus       129 ~~RIP~---------~GRDm~y~~~scDly~~gs-g~evYRlNLE------qGrfL~P~~~------~~~~lN~v~in~~  186 (703)
T KOG2321|consen  129 RTRIPK---------FGRDMKYHKPSCDLYLVGS-GSEVYRLNLE------QGRFLNPFET------DSGELNVVSINEE  186 (703)
T ss_pred             eeecCc---------CCccccccCCCccEEEeec-CcceEEEEcc------cccccccccc------ccccceeeeecCc
Confidence            1 1211         114566664 446666554 4678989987      4466665532      2244577888888


Q ss_pred             CcEEEEeCCCCeEEEEeCCCC-EEEEeCCCCC-----CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998        210 NRVIVSDSNNHRVQIFDVNGR-VITSFGSEGS-----EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~  282 (319)
                      ..+++++..+|.|..||+..+ .+..+.....     .......++++.|+.+|--+.++...|.+++||. ..+.+..-
T Consensus       187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k  266 (703)
T KOG2321|consen  187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK  266 (703)
T ss_pred             cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec
Confidence            899999999999999997532 2223221111     1223445889999988988899999999999994 33443332


Q ss_pred             cccCCCCCCCCCcceEEEccC--CcEEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSN--GNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~--g~~~v~~~~~~~i~v~  319 (319)
                      .     ......+..+.|-+.  +..+++. ....+++|
T Consensus       267 d-----h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiW  299 (703)
T KOG2321|consen  267 D-----HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIW  299 (703)
T ss_pred             c-----cCCccceeeecccccCCCceEEec-chHHhhhc
Confidence            1     122334555666433  2333332 23345555

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.72  E-value=3.9e-06  Score=70.68  Aligned_cols=219  Identities=13%  Similarity=0.080  Sum_probs=119.0

Q ss_pred             eEEcCCCcE-EEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCC----CeEEEEcC-CCcEE
Q psy13998         61 IAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSN----HRVQVFQS-DGTFV  131 (319)
Q Consensus        61 v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~-~~~~~  131 (319)
                      +-+++||+. .......+.+.+    +|..+.+...+.   ..|..++++++|+++++.+.+    ..+...+. +...+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSv----ID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~  273 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTA----VDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV  273 (635)
T ss_pred             cccCCCCCEeecccceeEEEEE----EECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence            334455542 223333455666    566554443332   367888999998765554322    23333331 11111


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      ..+...          ...++.++|+....  .+++|.++|..... .....++..+.       -...|.+++++|||+
T Consensus       274 vvfni~----------~iea~vkdGK~~~V--~gn~V~VID~~t~~-~~~~~v~~yIP-------VGKsPHGV~vSPDGk  333 (635)
T PRK02888        274 VVFNIA----------RIEEAVKAGKFKTI--GGSKVPVVDGRKAA-NAGSALTRYVP-------VPKNPHGVNTSPDGK  333 (635)
T ss_pred             EEEchH----------HHHHhhhCCCEEEE--CCCEEEEEECCccc-cCCcceEEEEE-------CCCCccceEECCCCC
Confidence            111100          00122345654443  35788888876400 00012333321       235789999999996


Q ss_pred             E-EEEeCCCCeEEEEeCCCCE-------------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-
Q psy13998        212 V-IVSDSNNHRVQIFDVNGRV-------------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-  276 (319)
Q Consensus       212 ~-~v~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-  276 (319)
                      + |+++..++.+.++|.....             +.+.       .-...|...+|+++|+.|.+-..+..|..|+.+. 
T Consensus       334 ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-------evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a  406 (635)
T PRK02888        334 YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-------ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAA  406 (635)
T ss_pred             EEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-------ccCCCcceEEECCCCCEEEeEeecceeEEEehHHH
Confidence            5 5556668899999965311             1111       1133588899999999999999999999999542 


Q ss_pred             ------c----eEEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        277 ------Q----FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       277 ------~----~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                            +    .+..+ ......+|.....+=...+||+++++..
T Consensus       407 ~~~~~g~~~~~v~~k~-dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        407 IRAYKGEKVDPIVQKL-DVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             HHHhccccCCcceecc-cCCCccceeeecCCCcCCCCCCEEEEcc
Confidence                  2    22222 1112234444444444578888777653

>KOG4547|consensus

Probab=98.70  E-value=1.1e-05  Score=66.09  Aligned_cols=181  Identities=14%  Similarity=0.266  Sum_probs=119.9

Q ss_pred             CCCcEEEEeCCCCeEEEeccccccccceeeEEecCc-----------eeeEE----------------cCCCcEEEEcCC
Q psy13998         65 PDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP-----------RGIAV----------------GPDNSIVVADSS  117 (319)
Q Consensus        65 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~l~~----------------~~~g~~~~~~~~  117 (319)
                      |.+.+++....+|.+++    |+..++....++...           .++..                +.+-.+++-+..
T Consensus         3 ~~~~~~A~~~~~g~l~i----w~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRI----WDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             chhheEeecCCCCeEEE----EEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            34568888899999999    888766655543211           11111                112346777888


Q ss_pred             CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        118 NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       118 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      .+.|..|+ ..|+....+..    ..|...+..+..+.+-..+.+++.+..+..|+....      .....+      ..
T Consensus        79 ~g~v~~ys~~~g~it~~~st----~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~------~~  142 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLST----DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIW------KE  142 (541)
T ss_pred             CccEEEEEecCCeEEEEEec----CCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeee------cc
Confidence            89999999 56666666543    345566677776666567778888999999988743      333333      22


Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC-----CcEEEEeC-CCCEE
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ-----GYISVGDS-GNNRI  269 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----g~~~v~~~-~~~~i  269 (319)
                      ....+..++++|||.++++++  +.|.+||. +.+.+..|      .+|...++.+.|..+     |.++.+.. ...-+
T Consensus       143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITF------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe------cCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            334567899999999888775  48999996 56777888      677777777777654     55555544 33334


Q ss_pred             EEEc
Q psy13998        270 QIFT  273 (319)
Q Consensus       270 ~~~~  273 (319)
                      .+|-
T Consensus       215 ~~w~  218 (541)
T KOG4547|consen  215 TVWV  218 (541)
T ss_pred             eEEE
Confidence            4444

>KOG0644|consensus

Probab=98.70  E-value=5.6e-08  Score=82.33  Aligned_cols=196  Identities=17%  Similarity=0.189  Sum_probs=126.0

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecC
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  174 (319)
                      |+..+.+.+++..|..+++++.+..+++|. .++..+...      .+|...+..++++.+..+..+++.|..|++|.+.
T Consensus       189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~------rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC------RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             hhhheeeeeeccccceEeecCccceeeeeeccchhhhccC------CCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            667889999999999999999999999999 455555555      6788888999999888888889999999999876


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC----------------
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE----------------  238 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~----------------  238 (319)
                      .      +.++..+      .++...+++++++|--    +.+.+|.+.+||..-..+.....+                
T Consensus       263 ~------~~pvsvL------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~  326 (1113)
T KOG0644|consen  263 D------GAPVSVL------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN  326 (1113)
T ss_pred             C------CchHHHH------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc
Confidence            3      2333333      4566778889998853    556788899988552111111000                


Q ss_pred             -------CC--CcccccCcceEEEcCCCcEE-----------EEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998        239 -------GS--EEGQLKFPRGVAVDDQGYIS-----------VGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       239 -------~~--~~~~~~~~~~i~~~~~g~~~-----------v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                             +.  ..........+++...+-+|           ++...+..+.+|+ .+|..+...      .++......
T Consensus       327 ~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l------~ghsd~~yv  400 (1113)
T KOG0644|consen  327 NGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL------MGHSDEVYV  400 (1113)
T ss_pred             cccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh------cccccceee
Confidence                   00  00000011112222222233           3334456778888 567666655      456666777


Q ss_pred             EEEccCC-cEEEEeCCCCeEEeC
Q psy13998        298 VAVMSNG-NILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g-~~~v~~~~~~~i~v~  319 (319)
                      +.++|=. ++..+.+.||..-||
T Consensus       401 Ld~Hpfn~ri~msag~dgst~iw  423 (1113)
T KOG0644|consen  401 LDVHPFNPRIAMSAGYDGSTIIW  423 (1113)
T ss_pred             eeecCCCcHhhhhccCCCceEee
Confidence            7777633 355666666666665

>KOG0974|consensus

Probab=98.70  E-value=1.3e-06  Score=75.94  Aligned_cols=191  Identities=16%  Similarity=0.223  Sum_probs=131.0

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc-------eeeE-EcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP-------RGIA-VGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~l~-~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      +++.+-.+..+.+.++....++.+.+    ++........+...+       ..+. .+++.-.+++++.-+.|.+|.+.
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i----~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLI----RDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEE----EecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence            34444444455555555666777878    666544443333221       1122 22332344556667899999944


Q ss_pred             C--cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        128 G--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       128 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      .  +.. .+      .+|...+..+.++.+|.++++.+.|..+++|+++...      ...     ....+|...+..+.
T Consensus       164 ~dn~p~-~l------~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~------~~~-----~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  164 EDNKPI-RL------KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE------VLG-----CTGFGHSARVWACC  225 (967)
T ss_pred             ccCCcc-ee------cccCCceEEEEEccCCcEEEEEecCcceeeeeccccc------ccC-----cccccccceeEEEE
Confidence            2  222 12      5788889999999999999999999999999998642      221     11156677788888


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccc-ccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ-LKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      +.+.  .+++.+.+-..++|+.++..+..+      .+| ...+..++++++..+.++++.|+.+++|+..+
T Consensus       226 ~~~n--~i~t~gedctcrvW~~~~~~l~~y------~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  226 FLPN--RIITVGEDCTCRVWGVNGTQLEVY------DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eccc--eeEEeccceEEEEEecccceehhh------hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9887  778888899999999888776655      333 34578899988888999999999999999554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.68  E-value=1.6e-05  Score=61.31  Aligned_cols=192  Identities=20%  Similarity=0.251  Sum_probs=116.6

Q ss_pred             ceEEcCCCcEEEEe-----CCCCeEEEeccccccc-cceeeEEec----CceeeEEcCCC-cEEEEcCC-----------
Q psy13998         60 GIAVGPDNSIVVAD-----SSNHRVQVCFPHFDLK-TNCVFLAFT----WPRGIAVGPDN-SIVVADSS-----------  117 (319)
Q Consensus        60 ~v~~~~~g~~~~~~-----~~~~~v~~~~~~~~~~-~~~~~~~~~----~~~~l~~~~~g-~~~~~~~~-----------  117 (319)
                      .-+|++||+++++.     ...|.|-+    ||.. +-..+.++.    .|+.+.+.||| .++|+.+.           
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgV----yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~k  130 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGV----YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAK  130 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEE----EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCcee
Confidence            35799999977664     34689999    8876 344444554    78999999999 45565432           


Q ss_pred             ------CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC-------EEEEEecCCceeeecCc
Q psy13998        118 ------NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-------RVQIFDVNGRVFQSDGT  183 (319)
Q Consensus       118 ------~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-------~i~~~~~~~~~~~~~~~  183 (319)
                            +-.+...| .+|+.+.+...+.  ..+...+..++++++|.+++..-..+       -+.+++..+        
T Consensus       131 LNl~tM~psL~~ld~~sG~ll~q~~Lp~--~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--------  200 (305)
T PF07433_consen  131 LNLDTMQPSLVYLDARSGALLEQVELPP--DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--------  200 (305)
T ss_pred             cChhhcCCceEEEecCCCceeeeeecCc--cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--------
Confidence                  12355565 6777776654321  22445678899999998888754332       233333321        


Q ss_pred             eeeeecccCC-cCCCCCCceeEEEcCCCcEE-EEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998        184 FVGKFGSMGN-KAGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYIS  260 (319)
Q Consensus       184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~  260 (319)
                      .+..+..... ......+.-+|++++++.++ ++....+.+.+||. ++..+...        .+....+++..+++  |
T Consensus       201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--------~l~D~cGva~~~~~--f  270 (305)
T PF07433_consen  201 ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--------PLPDACGVAPTDDG--F  270 (305)
T ss_pred             cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--------ccCceeeeeecCCc--e
Confidence            1111111000 01223456789999998655 66667889999984 66666544        23345677777776  4


Q ss_pred             EEeCCCCEEEEEcCC
Q psy13998        261 VGDSGNNRIQIFTPD  275 (319)
Q Consensus       261 v~~~~~~~i~~~~~~  275 (319)
                      +..+..+.+...+..
T Consensus       271 ~~ssG~G~~~~~~~~  285 (305)
T PF07433_consen  271 LVSSGQGQLIRLSPD  285 (305)
T ss_pred             EEeCCCccEEEccCc
Confidence            444555666665543

>KOG4499|consensus

Probab=98.68  E-value=3.3e-06  Score=61.36  Aligned_cols=151  Identities=11%  Similarity=0.086  Sum_probs=98.0

Q ss_pred             CceeeEEcCCCcEEEEcCC---------CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEE
Q psy13998         99 WPRGIAVGPDNSIVVADSS---------NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRV  168 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i  168 (319)
                      ..++-.++|+|+.|.....         .+.++.|-..++....+       ....-+++++|+.+. .+|+.++.+-+|
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~-------~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW-------NCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee-------hhccCCccccccccCcEEEEEccCceEE
Confidence            3456778899988664322         34566665555543333       233556889999754 678899999999


Q ss_pred             EEEe--cCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccc
Q psy13998        169 QIFD--VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQL  245 (319)
Q Consensus       169 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~  245 (319)
                      ..||  ..+..+. +.+.+......  .+.....|.+++++.+|++|++....++|+.+|+ +|+.+..+.      -..
T Consensus       183 ~a~dyd~~tG~~s-nr~~i~dlrk~--~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik------lPt  253 (310)
T KOG4499|consen  183 DAYDYDCPTGDLS-NRKVIFDLRKS--QPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK------LPT  253 (310)
T ss_pred             eeeecCCCccccc-CcceeEEeccC--CCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE------cCC
Confidence            8787  3332111 11222222111  1233456889999999999999999999999996 788888773      234


Q ss_pred             cCcceEEEcCC--CcEEEEeCC
Q psy13998        246 KFPRGVAVDDQ--GYISVGDSG  265 (319)
Q Consensus       246 ~~~~~i~~~~~--g~~~v~~~~  265 (319)
                      ..+++.||...  ..+|+++..
T Consensus       254 ~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  254 PQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CceEEEEecCCCccEEEEEehh
Confidence            45788888654  346776653

>KOG1214|consensus

Probab=98.67  E-value=2.1e-06  Score=73.19  Aligned_cols=193  Identities=16%  Similarity=0.152  Sum_probs=139.4

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCc
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGT  129 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~  129 (319)
                      .-|.+|+|+-..+ ++.++....+|..    -.++..+...    .+..|.+|+++.-+ ++|++++...+|-+-..+|+
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~r----asL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~ 1100 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISR----ASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGS 1100 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCcccc----ccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCc
Confidence            4467888876444 6778877788887    6665332222    56689999999765 69999998888888778888


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC--CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN--NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      ..+.+.     ...+..|.+|++++ .+++|+++..  +-.|..-+++|+..    +++-        ......|+++.|
T Consensus      1101 ~rkvLf-----~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~Nr----Rili--------n~DigLPNGLtf 1163 (1289)
T KOG1214|consen 1101 ERKVLF-----YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENR----RILI--------NTDIGLPNGLTF 1163 (1289)
T ss_pred             eeeEEE-----eecccCcceEEeecccCceeeccccccCCcceeeccCCccc----eEEe--------ecccCCCCCcee
Confidence            766654     23456789999998 6799999863  34566666665311    1111        334567899999


Q ss_pred             cCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC
Q psy13998        207 SNTN-RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       207 ~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      +|.. .|.+++..++++.-..++|.-.+.+      ...+..|.+|.-..+ ++|.++..++.|.-.+.-+
T Consensus      1164 dpfs~~LCWvDAGt~rleC~~p~g~gRR~i------~~~LqYPF~itsy~~-~fY~TDWk~n~vvsv~~~~ 1227 (1289)
T KOG1214|consen 1164 DPFSKLLCWVDAGTKRLECTLPDGTGRRVI------QNNLQYPFSITSYAD-HFYHTDWKRNGVVSVNKHS 1227 (1289)
T ss_pred             CcccceeeEEecCCcceeEecCCCCcchhh------hhcccCceeeeeccc-cceeeccccCceEEeeccc
Confidence            9976 4568888888888888887666665      556778988887766 5999999999999888543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.64  E-value=4.3e-05  Score=57.36  Aligned_cols=202  Identities=10%  Similarity=0.100  Sum_probs=106.3

Q ss_pred             eEEcCCCcEEEEcCCCCeEEEEc-CC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee
Q psy13998        103 IAVGPDNSIVVADSSNHRVQVFQ-SD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       103 l~~~~~g~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      ++.+.+|++++.-. +..|.+-. .+  +..+.+...+   ......-..++|+||+.+++.+...|.|.+||+.|..+ 
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVp---kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-   77 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVP---KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-   77 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecC---CCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-
Confidence            56677888766543 44555544 22  2233333333   22334457899999999999999999999999987432 


Q ss_pred             ecCceeeeecccCCcCC-CCCCceeEEEcCCC-------cEEEEeCCCCeEEEEeC----C--CCEEEEeCCCCCCcccc
Q psy13998        180 SDGTFVGKFGSMGNKAG-QLEHPHYIAVSNTN-------RVIVSDSNNHRVQIFDV----N--GRVITSFGSEGSEEGQL  245 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g-------~~~v~~~~~~~i~~~~~----~--~~~~~~~~~~~~~~~~~  245 (319)
                            ..+........ ....+.+|.|-+..       .+++.. ..|.++-|-.    +  .+....+.-.   ....
T Consensus        78 ------f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y~G~L~Sy~vs~gt~q~y~e~hsfsf~---~~yp  147 (282)
T PF15492_consen   78 ------FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-YRGQLRSYLVSVGTNQGYQENHSFSFS---SHYP  147 (282)
T ss_pred             ------EEcCcccccCCccccceeeeEeeccccccccceeEEEEe-ccceeeeEEEEcccCCcceeeEEEEec---ccCC
Confidence                  11111000011 11334555554311       233332 2444444331    1  1122222100   1123


Q ss_pred             cCcceEEEcCCCcEEEEeCC-C----------CEEEEEc-CCCce----EEeecccC-------------------CCCC
Q psy13998        246 KFPRGVAVDDQGYISVGDSG-N----------NRIQIFT-PDGQF----LRAFGCWG-------------------SGDG  290 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~-~----------~~i~~~~-~~g~~----~~~~~~~~-------------------~~~~  290 (319)
                      ..+.+++++|.-++++.++. .          .-+..|. .++.+    +...+..-                   ....
T Consensus       148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~  227 (282)
T PF15492_consen  148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ  227 (282)
T ss_pred             CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence            35677889998776555542 1          1344554 22211    11110000                   0011


Q ss_pred             CCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        291 EFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       291 ~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ....+..|.++|||.++++-..+|.|.+|
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW  256 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLW  256 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence            24557889999999999999999999998

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.63  E-value=2.8e-05  Score=62.37  Aligned_cols=127  Identities=14%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             CCcEEEEcCCCC-eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceee
Q psy13998        108 DNSIVVADSSNH-RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       108 ~g~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                      +++-++.+..++ .+-+|+..+..++.+      ...+..+.++.++++|+.++.+....++.++|+++....    .+.
T Consensus       370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~------e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~----~id  439 (668)
T COG4946         370 DPEGDVIGTNDGDKLGIYDKDGGEVKRI------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR----LID  439 (668)
T ss_pred             CCcceEEeccCCceEEEEecCCceEEEe------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee----Eec
Confidence            444444455555 899999888877777      456678899999999998888888889999998753221    111


Q ss_pred             eecccCCcCCCCCCceeEEEcCCCcEEEEeCCC----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        187 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                              ......+..++++|+++.++-+.-+    ..|++||+.+..+.....+      ...-.+-+|+|+|+
T Consensus       440 --------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~------ta~DfsPaFD~d~r  501 (668)
T COG4946         440 --------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP------TAYDFSPAFDPDGR  501 (668)
T ss_pred             --------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC------cccccCcccCCCCc
Confidence                    2233456788999999877665543    5689999988666655322      12223447888875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.63  E-value=3.7e-05  Score=69.76  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=100.0

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-------------------Ee------------c------
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-------------------AF------------T------   98 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------~~------------~------   98 (319)
                      ..+.+++|+||+++++...+++++.+...+|+.-....+.                   .|            .      
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~  200 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPK  200 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCc
Confidence            5789999999999988888888888855545432111110                   00            0      


Q ss_pred             ----------CceeeEEcCCCcEEEEcCC------CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEe
Q psy13998         99 ----------WPRGIAVGPDNSIVVADSS------NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  162 (319)
Q Consensus        99 ----------~~~~l~~~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~  162 (319)
                                ....|+|-.||.++++.+.      ...+++|+.+|.....-...      ..--..++|.|+|+++++.
T Consensus       201 ~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v------~gLe~~l~WrPsG~lIA~~  274 (928)
T PF04762_consen  201 VDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPV------DGLEGALSWRPSGNLIASS  274 (928)
T ss_pred             cccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccC------CCccCCccCCCCCCEEEEE
Confidence                      1234667778888776542      35799999888765544211      1122578999999988875


Q ss_pred             CC---CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC
Q psy13998        163 SN---NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  229 (319)
Q Consensus       163 ~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~  229 (319)
                      ..   ...|..|..+|..   .|++.-.+      .........+.|++++.+++.-..+ .|.+|....
T Consensus       275 q~~~~~~~VvFfErNGLr---hgeF~l~~------~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~N  334 (928)
T PF04762_consen  275 QRLPDRHDVVFFERNGLR---HGEFTLRF------DPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSN  334 (928)
T ss_pred             EEcCCCcEEEEEecCCcE---eeeEecCC------CCCCceeeEEEECCCCCEEEEEecC-CceEEEeeC
Confidence            42   3567778777642   12222221      1122345789999999988776544 499998653

>KOG2314|consensus

Probab=98.62  E-value=1.2e-05  Score=65.67  Aligned_cols=265  Identities=15%  Similarity=0.158  Sum_probs=140.3

Q ss_pred             cccCCCccchhccccceeeeecccCCCC-C-----cCCCCcceEEcCCCcEEEEeC-----------CCCeEEEeccccc
Q psy13998         25 GQVGTTPRSQYLQKRRLQFKIGSRGSEP-G-----CFTWPRGIAVGPDNSIVVADS-----------SNHRVQVCFPHFD   87 (319)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~g~~~~~~~-----------~~~~v~~~~~~~~   87 (319)
                      ..+-|||.|.||.+.-..+ +..||... +     ....+.-+.|+|+.+++|+-+           ....+.+    ||
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I----WD  288 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII----WD  288 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEE----EE
Confidence            5677999999998865443 33444322 1     125678899999999999865           2368899    99


Q ss_pred             cccceeeEEecCc-------eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEE
Q psy13998         88 LKTNCVFLAFTWP-------RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI  159 (319)
Q Consensus        88 ~~~~~~~~~~~~~-------~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  159 (319)
                      +.++.....+..+       .-..|+.|+++++.-.. +.|.+|+ +.-.++..-      .-....+....|+|.++++
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~K------slki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKK------SLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccc------ccCCccccCcccCCCcceE
Confidence            9888776655432       12467778776665443 5788887 321111100      1112333444555544432


Q ss_pred             EE--eCCC---CEEEE-----------------------EecCCceeee------cC---ceee-----eecccCC---c
Q psy13998        160 VS--DSNN---HRVQI-----------------------FDVNGRVFQS------DG---TFVG-----KFGSMGN---K  194 (319)
Q Consensus       160 ~~--~~~~---~~i~~-----------------------~~~~~~~~~~------~~---~~~~-----~~~~~~~---~  194 (319)
                      +-  ...+   .++.+                       |.-+|..+..      ..   ....     ++.....   .
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            21  1111   11111                       1111111100      00   0000     0000000   0


Q ss_pred             CCCCCCceeEEEcCCCcEEEEeCC---CCeEEEEeCC--CC---EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC--
Q psy13998        195 AGQLEHPHYIAVSNTNRVIVSDSN---NHRVQIFDVN--GR---VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS--  264 (319)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~v~~~~---~~~i~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~--  264 (319)
                      .........+++.|.|..|++-+.   ...+..|...  +.   .+..+      .  ....+.+.++|.|+++|.+.  
T Consensus       442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~------d--k~~~N~vfwsPkG~fvvva~l~  513 (698)
T KOG2314|consen  442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL------D--KKFANTVFWSPKGRFVVVAALV  513 (698)
T ss_pred             eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh------c--ccccceEEEcCCCcEEEEEEec
Confidence            011123345677888866554332   3456666543  21   12222      1  13457899999999877664  


Q ss_pred             -CCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        265 -GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       265 -~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                       ..+.+..+|.+-.-++..+     .......+.+.|+|.|+++++++...
T Consensus       514 s~~g~l~F~D~~~a~~k~~~-----~~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  514 SRRGDLEFYDTDYADLKDTA-----SPEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ccccceEEEecchhhhhhcc-----CccccccccceECCCCCEEEEeeehh
Confidence             4678899986532222221     22334568899999999999887643

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.61  E-value=1.2e-05  Score=66.12  Aligned_cols=165  Identities=14%  Similarity=0.200  Sum_probs=90.6

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCC-cEEEEecCCCcc-CCCCCCceeEEEeCCC-------eEEEEeC---
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDG-TFVGKFGSMGNK-AGQLEHPHYIAVSNTN-------RVIVSDS---  163 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~~g-------~~~~~~~---  163 (319)
                      .+..|.+|++.|+|++|++....++|++++..+ ........+... ......+.+|+++|+-       .+|++-+   
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            467899999999999999887678999998543 222211111111 1124667899999763       5677632   


Q ss_pred             ------CCCEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC---------------
Q psy13998        164 ------NNHRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH---------------  220 (319)
Q Consensus       164 ------~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~---------------  220 (319)
                            ....|..|.++..  .+.....++....     ......-..|+|.|+|.||++....+               
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP-----~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~  182 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP-----AGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQH  182 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCC-----CCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchhcc
Confidence                  1345666665421  1110001111111     01112235588999999998755431               


Q ss_pred             -----------------eEEEEeCCCCEEEEeCC-CCC----CcccccCcceEEEcCCCcEEEEeCC
Q psy13998        221 -----------------RVQIFDVNGRVITSFGS-EGS----EEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       221 -----------------~i~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                                       .|.+++++|.....-.. .+.    -.-.+..|.+++|+|+|++|++...
T Consensus       183 ~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~G  249 (454)
T TIGR03606       183 TPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQG  249 (454)
T ss_pred             ccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecC
Confidence                             34445544431000000 000    0113456889999999999998754

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.61  E-value=3.3e-06  Score=71.08  Aligned_cols=188  Identities=12%  Similarity=0.091  Sum_probs=109.3

Q ss_pred             CCCcceEEcCCCcEEEEeC----CCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CC---
Q psy13998         56 TWPRGIAVGPDNSIVVADS----SNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SD---  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~---  127 (319)
                      ..|..++++++|+++++.+    ...++..    .+.........+......++.++|+....  .+++|.++| ..   
T Consensus       235 gnpd~v~~spdGk~afvTsyNsE~G~tl~e----m~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~  308 (635)
T PRK02888        235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAE----MMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAAN  308 (635)
T ss_pred             CCcccceECCCCCEEEEeccCcccCcceee----eccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCcccc
Confidence            4778899999998655443    2234444    33322222222222222234456764443  256899999 33   


Q ss_pred             -C-cEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCc------eeeeecccCCcCCCC
Q psy13998        128 -G-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGT------FVGKFGSMGNKAGQL  198 (319)
Q Consensus       128 -~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  198 (319)
                       + +.+..+...       ..|+++.++|||++ |+++..++.+.++|........+++      +....       ..-
T Consensus       309 ~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-------evG  374 (635)
T PRK02888        309 AGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-------ELG  374 (635)
T ss_pred             CCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-------ccC
Confidence             2 344444322       67899999999976 4555668999999987532111111      11111       113


Q ss_pred             CCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-------C----EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-------R----VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~  264 (319)
                      ..|...+|+++|+.|.+-..+..|..|+.+.       .    .+.++ ......+|...+.+=...++|+++++..
T Consensus       375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~-dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKL-DVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecc-cCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            4577789999999999999999999999643       1    22222 1111233433333444467888877754

>KOG1354|consensus

Probab=98.59  E-value=4.3e-06  Score=64.07  Aligned_cols=247  Identities=11%  Similarity=0.076  Sum_probs=144.9

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC---C-------------CcC---------CCCcceEEcCCCc--EEEEe
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE---P-------------GCF---------TWPRGIAVGPDNS--IVVAD   73 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---~-------------~~~---------~~~~~v~~~~~g~--~~~~~   73 (319)
                      .+-|.++.|.-.|.+|+++...+++...+..   .             ..+         ..+..+.+-++++  .|+..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4668889999999999998665554333211   1             111         3456777776554  67778


Q ss_pred             CCCCeEEEeccccccccceeeE----------------------------------------EecCceeeEEcCCCcEEE
Q psy13998         74 SSNHRVQVCFPHFDLKTNCVFL----------------------------------------AFTWPRGIAVGPDNSIVV  113 (319)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~l~~~~~g~~~~  113 (319)
                      ..+.+|++    |.....+...                                        |..+++++.++.|...|+
T Consensus       105 tNdktiKl----WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  105 TNDKTIKL----WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             cCCcceee----eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            88999999    5442111100                                        222457788888888888


Q ss_pred             EcCCCCeEEEEcCC--CcEEEEecC-CCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998        114 ADSSNHRVQVFQSD--GTFVGKFGS-MGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG  189 (319)
Q Consensus       114 ~~~~~~~i~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  189 (319)
                      ++ .+=+|-+|++.  ......+.. +.+...-..-+++..|+|. .++|+-.+..|+|++.|++...+.....-+....
T Consensus       181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            75 35689999832  221111111 1111111134566778884 4788888889999999998533221111111110


Q ss_pred             ccCCc----CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC--CCCEEEEeCCCCCCcc---------cccCcceEEEc
Q psy13998        190 SMGNK----AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV--NGRVITSFGSEGSEEG---------QLKFPRGVAVD  254 (319)
Q Consensus       190 ~~~~~----~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~i~~~  254 (319)
                      ..+..    ..-...+..+.|+++|+++++-.. -.|.+||.  +.+.+..+........         ..-.-..++++
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence            00000    111235677899999998877543 47999995  5555555422111000         00111357788


Q ss_pred             CCCcEEEEeCCCCEEEEEc
Q psy13998        255 DQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       255 ~~g~~~v~~~~~~~i~~~~  273 (319)
                      .++...++|+-++..++|+
T Consensus       339 g~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             CCcceEecccccceEEEec
Confidence            8888999999999999999

>KOG3914|consensus

Probab=98.59  E-value=1.8e-06  Score=67.18  Aligned_cols=151  Identities=14%  Similarity=0.267  Sum_probs=96.0

Q ss_pred             ceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe
Q psy13998        147 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD  226 (319)
Q Consensus       147 ~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~  226 (319)
                      +..+..++++++++....+....+++..+...  .-++.....       -...+..+.+..+..........|.++.++
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~-------v~~~~~ai~~~~~~~sv~v~dkagD~~~~d  135 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSC-------VPKRPTAISFIREDTSVLVADKAGDVYSFD  135 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEee-------cccCcceeeeeeccceEEEEeecCCceeee
Confidence            34556677888888877777766666553211  012222221       123455566655443332222333444444


Q ss_pred             ---CC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEc
Q psy13998        227 ---VN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       227 ---~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~  301 (319)
                         .. +... .+      .+|......++++||+++++++..|..|++-...+ -.+..+-     .+|...+..+++-
T Consensus       136 i~s~~~~~~~-~~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-----lGH~eFVS~isl~  203 (390)
T KOG3914|consen  136 ILSADSGRCE-PI------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-----LGHKEFVSTISLT  203 (390)
T ss_pred             eecccccCcc-hh------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-----cccHhheeeeeec
Confidence               33 2222 22      57888899999999999999999999999988443 2333331     4788899999998


Q ss_pred             cCCcEEEEeCCCCeEEeC
Q psy13998        302 SNGNILVCDRENHRIQVF  319 (319)
Q Consensus       302 ~~g~~~v~~~~~~~i~v~  319 (319)
                      ++ ..++++++|++|++|
T Consensus       204 ~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  204 DN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             cC-ceeeecCCCCcEEEE
Confidence            65 669999999999999

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.53  E-value=0.00017  Score=54.54  Aligned_cols=189  Identities=14%  Similarity=0.149  Sum_probs=116.0

Q ss_pred             ceeeEEcCCCcEEEEcCCCC--eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998        100 PRGIAVGPDNSIVVADSSNH--RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus       100 ~~~l~~~~~g~~~~~~~~~~--~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      ..++.+..+|.+|-+.+..+  .|+.+| .+|+.......+.     ...-.++++. ++++|.....++...+||.++.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----T--EEEEEEE-TTEEEEEESSSSEEEEEETTTT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----cccceeEEEE-CCEEEEEEecCCeEEEEccccc
Confidence            47888877889998876554  799999 6677776654332     1234677777 4688888899999999999853


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                            +.+.++...       ..-.+++.+ ...++++++ +.+++.+|+. -+..+.+..... .......+-+.+- 
T Consensus       121 ------~~~~~~~y~-------~EGWGLt~d-g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~-g~pv~~LNELE~i-  183 (264)
T PF05096_consen  121 ------KKIGTFPYP-------GEGWGLTSD-GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDN-GRPVSNLNELEYI-  183 (264)
T ss_dssp             ------EEEEEEE-S-------SS--EEEEC-SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EET-TEE---EEEEEEE-
T ss_pred             ------eEEEEEecC-------CcceEEEcC-CCEEEEECC-ccceEEECCcccceEEEEEEEEC-CEECCCcEeEEEE-
Confidence                  334444221       234678754 235666665 6799999974 444444422111 1223344556654 


Q ss_pred             CCcEEEEeCCCCEEEEEcC-CCceEEeecccC---------CCCCCCCCcceEEEccCCc-EEEEeC
Q psy13998        256 QGYISVGDSGNNRIQIFTP-DGQFLRAFGCWG---------SGDGEFKGLEGVAVMSNGN-ILVCDR  311 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~---------~~~~~~~~~~~l~~~~~g~-~~v~~~  311 (319)
                      +|.+|+--.....|.+.|+ +|+++..+...+         .......-.++||++|++. +|+||-
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            7899999999999999995 677776552110         0111234579999998765 888874

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=0.00031  Score=58.38  Aligned_cols=193  Identities=10%  Similarity=0.070  Sum_probs=107.1

Q ss_pred             CcceEEcCCCc--EEEEeCC--CCeEEEeccccccccceeeE--EecC-ceeeEEcCCCc-EEEEcC--CCCeEEEEcCC
Q psy13998         58 PRGIAVGPDNS--IVVADSS--NHRVQVCFPHFDLKTNCVFL--AFTW-PRGIAVGPDNS-IVVADS--SNHRVQVFQSD  127 (319)
Q Consensus        58 ~~~v~~~~~g~--~~~~~~~--~~~v~~~~~~~~~~~~~~~~--~~~~-~~~l~~~~~g~-~~~~~~--~~~~i~~~~~~  127 (319)
                      ...-.|+|+|+  ++++...  ...|.+    +++.+++...  .... .....|+|||+ ++++..  .+..|++++..
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv----~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGERKPTLYK----YNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccCCCCEEEE----EECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            34678999997  3433332  457888    7776554332  2222 23467999996 444433  34578888865


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      +.....+...   ..   .-....|+|||+ ++++....  ..|+++++++.      +.. +....    +. .   ..
T Consensus       266 ~g~~~~LT~~---~~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g------~~~-rlt~~----g~-~---~~  324 (419)
T PRK04043        266 TKTLTQITNY---PG---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG------SVE-QVVFH----GK-N---NS  324 (419)
T ss_pred             CCcEEEcccC---CC---ccCccEECCCCCEEEEEECCCCCceEEEEECCCC------CeE-eCccC----CC-c---Cc
Confidence            5544444321   11   113347999985 55554333  36777777653      211 11000    11 1   13


Q ss_pred             EEcCCCcEEE-EeCCC--------CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC--CCCEEEEE
Q psy13998        205 AVSNTNRVIV-SDSNN--------HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS--GNNRIQIF  272 (319)
Q Consensus       205 ~~~~~g~~~v-~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~--~~~~i~~~  272 (319)
                      .++|+|+.++ +....        ..|++++.++...+.+....       .-....|+|||+ ++++..  ....+..+
T Consensus       325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-------VNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-------CcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            7899997543 33222        47889997665555553211       122468999997 334332  23357888


Q ss_pred             cCCCceEEee
Q psy13998        273 TPDGQFLRAF  282 (319)
Q Consensus       273 ~~~g~~~~~~  282 (319)
                      +.+|.....+
T Consensus       398 ~l~g~~~~~l  407 (419)
T PRK04043        398 RLNYNKSFLF  407 (419)
T ss_pred             ecCCCeeEEe
Confidence            8888766655

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.51  E-value=0.0003  Score=57.13  Aligned_cols=108  Identities=16%  Similarity=0.145  Sum_probs=69.6

Q ss_pred             CCCceeEEEcCCCcEEE--EeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC---CCCEEEEE
Q psy13998        198 LEHPHYIAVSNTNRVIV--SDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS---GNNRIQIF  272 (319)
Q Consensus       198 ~~~~~~~~~~~~g~~~v--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~---~~~~i~~~  272 (319)
                      ...+..+++.|.++-|.  ++.....+.++|..+.....+.      .  ..-..+.|+|.+++.+..+   ..+.+.+|
T Consensus       274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~P------e--~~rNT~~fsp~~r~il~agF~nl~gni~i~  345 (561)
T COG5354         274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFP------E--QKRNTIFFSPHERYILFAGFDNLQGNIEIF  345 (561)
T ss_pred             cccceeeeecccCCceeEEecccccceeecccccceEEecC------C--cccccccccCcccEEEEecCCccccceEEe
Confidence            34567789988775543  3456778889998888665552      1  1224578899987666544   34789999


Q ss_pred             cCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC------CCeEEeC
Q psy13998        273 TPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE------NHRIQVF  319 (319)
Q Consensus       273 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~------~~~i~v~  319 (319)
                      ++.|+....-.      -......-+.|+|||.+|.++..      |+.|.+|
T Consensus       346 ~~~~rf~~~~~------~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~  392 (561)
T COG5354         346 DPAGRFKVAGA------FNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLW  392 (561)
T ss_pred             ccCCceEEEEE------eecCCceEeeccCCceEEEecCCCcccccCcceEEE
Confidence            98887654421      11123445678999998877643      4555554

>KOG1214|consensus

Probab=98.51  E-value=7.3e-06  Score=70.04  Aligned_cols=190  Identities=16%  Similarity=0.207  Sum_probs=132.7

Q ss_pred             CceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCc
Q psy13998         99 WPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus        99 ~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      -+.+|+|+= +..+|.++-....|..-..+|..-..+.     ...+..|.+|+++.. .++|++++...+|.+-.++|.
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~-----n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~ 1100 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV-----NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGS 1100 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCccccccccCCCCceee-----cccCCCccceeeeeccceeeeeccccchhheeecCCc
Confidence            456777763 3457777776677776665554433332     334578899999974 489999998888887766653


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                             ..+.+.     ...+..|.+|++++ .++||+++..  +-.|-.-+++|+..+.+.     ......|++|.|
T Consensus      1101 -------~rkvLf-----~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRili-----n~DigLPNGLtf 1163 (1289)
T KOG1214|consen 1101 -------ERKVLF-----YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILI-----NTDIGLPNGLTF 1163 (1289)
T ss_pred             -------eeeEEE-----eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEe-----ecccCCCCCcee
Confidence                   222221     34567899999997 5689999863  456777778887666653     334567999999


Q ss_pred             cCCCc-EEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        254 DDQGY-ISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       254 ~~~g~-~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      +|..+ +..++.+.+++.-..++|.-.+.+      ...+..|.+|.-..+ ++|.++..++.|.
T Consensus      1164 dpfs~~LCWvDAGt~rleC~~p~g~gRR~i------~~~LqYPF~itsy~~-~fY~TDWk~n~vv 1221 (1289)
T KOG1214|consen 1164 DPFSKLLCWVDAGTKRLECTLPDGTGRRVI------QNNLQYPFSITSYAD-HFYHTDWKRNGVV 1221 (1289)
T ss_pred             CcccceeeEEecCCcceeEecCCCCcchhh------hhcccCceeeeeccc-cceeeccccCceE
Confidence            99864 666777888998888887665555      456677888876655 4899998887763

>KOG1064|consensus

Probab=98.49  E-value=1.7e-06  Score=79.75  Aligned_cols=218  Identities=14%  Similarity=0.181  Sum_probs=139.2

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      +.+.+..+.-.|...+|++++.||.|++    |.......+..+     ..+..+.|+.+|+-+-....||.+-.|..+.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~----~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRM----FEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEE----EeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC
Confidence            3466777777888889999999999999    655434443322     2456678888888777777789999998775


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEe---CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD---SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      +.....      ..|....+++.|-.  .++++.   +.++.+..||..-   .....++.        ..|....+.++
T Consensus      2283 k~~~s~------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~---~~~~s~v~--------~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2283 KPYTSW------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLL---PPMNSLVH--------TCHDGGATVLA 2343 (2439)
T ss_pred             cceecc------ccCCccccceeeee--hhhhccccCCCCCcccchhccc---Ccccceee--------eecCCCceEEE
Confidence            554444      34444556666654  334443   2456788888531   01112222        34566778899


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeec
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFG  283 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~  283 (319)
                      +-|...++++++.+|.|.+||...+ .++.+      .         +++ ...++++++..|.|.+|+.+. ..+..+.
T Consensus      2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~------~---------~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTF------Q---------ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             EcCcceEEEecCCcCcEEEeehHHHHHHHHh------h---------hhh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            9999999999999999999996543 33333      1         144 446899999999999999543 3444442


Q ss_pred             ccCCCCCCCCCc--ceEEEccCCcEEEEeC
Q psy13998        284 CWGSGDGEFKGL--EGVAVMSNGNILVCDR  311 (319)
Q Consensus       284 ~~~~~~~~~~~~--~~l~~~~~g~~~v~~~  311 (319)
                      ......+. ...  ..+-+.+.++++.++.
T Consensus      2408 ~e~ak~gf-Fr~~g~Q~~v~~~nrifsCga 2436 (2439)
T KOG1064|consen 2408 SEHAKQGF-FRNIGMQINVGQCNRIFSCGA 2436 (2439)
T ss_pred             hhhcccch-hhhcCceeeeccCceEEEecC
Confidence            22111121 122  3344455556666553

>KOG4190|consensus

Probab=98.49  E-value=1.5e-06  Score=70.75  Aligned_cols=205  Identities=15%  Similarity=0.188  Sum_probs=122.6

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-----------EecCceeeEEcCCCcEEEEcCCCC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------AFTWPRGIAVGPDNSIVVADSSNH  119 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~g~~~~~~~~~~  119 (319)
                      ..||.+.+..++.-.+.+-|++++.|.+|+.    |.+...+.-.           +...++++.|-.+.+.+++.  |+
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKL----WSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKL----WSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEE----EEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            3567777888777667788999999999999    7765433211           33466778887766555544  67


Q ss_pred             eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC--CCeEEEEe-CCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        120 RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSD-SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       120 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      .|.+|| .-|..+..+...   ..+ .....+..-+  +..+++++ +...+|+++|.+..      .+...+..-. .+
T Consensus       805 giHlWDPFigr~Laq~~da---pk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc------e~~~E~kVcn-a~  873 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDA---PKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC------EWTCELKVCN-AP  873 (1034)
T ss_pred             cceeecccccchhHhhhcC---ccc-CCCceeEecccCcchheeeeccchhhheeeecccc------cceeeEEecc-CC
Confidence            899999 455554433211   111 1112222223  33445544 56788999987643      2222221110 01


Q ss_pred             CCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE-Ec
Q psy13998        196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI-FT  273 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~-~~  273 (319)
                      .......++++.+.|+.+.++..+|.|.+.| .+|+.+..+....-      ....++- |..+.++....++.+.+ |-
T Consensus       874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec------dllqlaa-psdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC------DLLQLAA-PSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc------hhhhhcC-chhHHHHhhcccceeEeeeh
Confidence            1123357789999999999999999999999 46776655521111      1112222 44567777777888887 77


Q ss_pred             -CCCceE
Q psy13998        274 -PDGQFL  279 (319)
Q Consensus       274 -~~g~~~  279 (319)
                       .+|...
T Consensus       947 aldgimh  953 (1034)
T KOG4190|consen  947 ALDGIMH  953 (1034)
T ss_pred             hcCCeee
Confidence             455443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.49  E-value=6.1e-05  Score=58.92  Aligned_cols=255  Identities=15%  Similarity=0.178  Sum_probs=139.6

Q ss_pred             chhhhhhhhhhcccccccCCCccchhccccceee----------eecccCCC----------CC-----cCCCCcceEEc
Q psy13998         10 INSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQF----------KIGSRGSE----------PG-----CFTWPRGIAVG   64 (319)
Q Consensus        10 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~----------~~~~~~~~----------~~-----~~~~~~~v~~~   64 (319)
                      ..+++++-+........+..||++..+.....-+          .+..|+..          +.     ....+...+++
T Consensus        24 ~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls  103 (342)
T PF06433_consen   24 ADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALS  103 (342)
T ss_dssp             TTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-
T ss_pred             CCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEc
Confidence            3445555555555555666778777655432111          12222221          11     12456778899


Q ss_pred             CCCcEEEE--eCCCCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcCCCCeEEEEc--CCCcEEEEecCCCc
Q psy13998         65 PDNSIVVA--DSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ--SDGTFVGKFGSMGN  139 (319)
Q Consensus        65 ~~g~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~  139 (319)
                      .+|++++.  .+-..+|.+    .|+...+...+++-|-|.-+-|.+ +-|.+-++||++..+.  .+|+...+....  
T Consensus       104 ~dgk~~~V~N~TPa~SVtV----VDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~--  177 (342)
T PF06433_consen  104 ADGKFLYVQNFTPATSVTV----VDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV--  177 (342)
T ss_dssp             TTSSEEEEEEESSSEEEEE----EETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEE--
T ss_pred             cCCcEEEEEccCCCCeEEE----EECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccc--
Confidence            99985433  345678899    899888888888888776666644 3566666788776665  677765432110  


Q ss_pred             cCCCCCCc--eeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc----CCCCCCceeEEEcC-CCc
Q psy13998        140 KAGQLEHP--HYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK----AGQLEHPHYIAVSN-TNR  211 (319)
Q Consensus       140 ~~~~~~~~--~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~g~  211 (319)
                       ......|  ..-++.. ++.+++ -+.+|.|+-.++.+....    +...+......    .-....-.-+++++ .++
T Consensus       178 -F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~----~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  178 -FDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAK----FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             -SSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEE----EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             -cCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCccc----ccCcccccCccccccCcCCcceeeeeeccccCe
Confidence             0011111  1223333 345555 456788888888775322    22222111000    00111223378875 567


Q ss_pred             EEEEeCC-------C--CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc-CCCce
Q psy13998        212 VIVSDSN-------N--HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT-PDGQF  278 (319)
Q Consensus       212 ~~v~~~~-------~--~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~-~~g~~  278 (319)
                      +|+.-..       +  -.|++||. +++.+.++.      . ...+.+|.++.+.+  +|.....++.|.+|| .+|+.
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~------l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP------L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE------E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe------C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            7765321       1  25889996 566666662      1 12356899988764  556677889999999 68999


Q ss_pred             EEeec
Q psy13998        279 LRAFG  283 (319)
Q Consensus       279 ~~~~~  283 (319)
                      ++.+.
T Consensus       325 ~~~~~  329 (342)
T PF06433_consen  325 VRSIE  329 (342)
T ss_dssp             EEEE-
T ss_pred             Eeehh
Confidence            98884

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2041|consensus

Probab=98.47  E-value=4.5e-06  Score=70.19  Aligned_cols=228  Identities=13%  Similarity=0.083  Sum_probs=140.2

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCCcEEEEcCCCCeEEEE
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDNSIVVADSSNHRVQVF  124 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~  124 (319)
                      ..||-..|.-+.|+.+...+-+...+|-|.+    |-+-.+....      ..+.+.+++|+.+|..+.....||.|.+=
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV----WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIV----WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEE----EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence            3577788888899887777778788999999    6554332221      23356889999999877777888888887


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee-ecCce-eeeecccCCcCCCCCCce
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ-SDGTF-VGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  202 (319)
                      ..+|..+.--...+      ....++.+++|.+..+..-.++.+.+||..|.-.. ..... +...+..   ......+.
T Consensus       143 svdGNRIwgKeLkg------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~---s~~~~kia  213 (1189)
T KOG2041|consen  143 SVDGNRIWGKELKG------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF---SNFPTKIA  213 (1189)
T ss_pred             eeccceecchhcch------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee---cCCCcccc
Confidence            77776554322211      22356788888887777778899999988763100 00000 0000000   00000111


Q ss_pred             eEE--------EcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC--------
Q psy13998        203 YIA--------VSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG--------  265 (319)
Q Consensus       203 ~~~--------~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~--------  265 (319)
                      ++.        +-|+-..++++..+|++.+... +......+      ... -.+.++.|+++|.+++.++.        
T Consensus       214 ~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~------dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~  286 (1189)
T KOG2041|consen  214 EIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV------DTG-MKIVGAKWNHNGAVLAVCGNDSDADEPT  286 (1189)
T ss_pred             ceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE------ecc-cEeecceecCCCcEEEEccCcccccCcc
Confidence            122        2245556777777888877652 21111122      111 34678899999988887663        


Q ss_pred             -CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        266 -NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       266 -~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                       .+.|..|++-|+.+.++.      .....+++++|-..|
T Consensus       287 d~n~v~Fysp~G~i~gtlk------vpg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  287 DSNKVHFYSPYGHIVGTLK------VPGSCITGLSWEGTG  320 (1189)
T ss_pred             ccceEEEeccchhheEEEe------cCCceeeeeEEcCCc
Confidence             357899999999998883      444567777775544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.47  E-value=0.00029  Score=54.02  Aligned_cols=188  Identities=15%  Similarity=0.235  Sum_probs=93.1

Q ss_pred             EEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecC
Q psy13998        104 AVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDG  182 (319)
Q Consensus       104 ~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~  182 (319)
                      .+..++.+|++ ..++.++.|| .+|+.+..+...+..    ..+  . ...++.+|+.. .++.+..+|..      +|
T Consensus        32 ~~~~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~----~~~--~-~~~~~~v~v~~-~~~~l~~~d~~------tG   96 (238)
T PF13360_consen   32 AVPDGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPI----SGA--P-VVDGGRVYVGT-SDGSLYALDAK------TG   96 (238)
T ss_dssp             EEEETTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCG----GSG--E-EEETTEEEEEE-TTSEEEEEETT------TS
T ss_pred             EEEeCCEEEEE-cCCCEEEEEECCCCCEEEEeeccccc----cce--e-eeccccccccc-ceeeeEecccC------Cc
Confidence            44345566665 5688999999 599988877543211    111  2 33356666665 55689999955      33


Q ss_pred             ceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC-ccc---ccCcceEEEcCCC
Q psy13998        183 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE-EGQ---LKFPRGVAVDDQG  257 (319)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~-~~~---~~~~~~i~~~~~g  257 (319)
                      +.+...............+...++.  +..+++...++.|+.+|+ +|+.+......... ...   .....+-.+..++
T Consensus        97 ~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (238)
T PF13360_consen   97 KVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG  174 (238)
T ss_dssp             CEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT
T ss_pred             ceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC
Confidence            5554421111001111222233333  545555555889999995 68777666332110 000   1111222222345


Q ss_pred             cEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        258 YISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      .+|++... +.+..+| .+|+.+...       . ...+..+....++.+|+.+ .++.|..
T Consensus       175 ~v~~~~~~-g~~~~~d~~tg~~~w~~-------~-~~~~~~~~~~~~~~l~~~~-~~~~l~~  226 (238)
T PF13360_consen  175 RVYVSSGD-GRVVAVDLATGEKLWSK-------P-ISGIYSLPSVDGGTLYVTS-SDGRLYA  226 (238)
T ss_dssp             EEEEECCT-SSEEEEETTTTEEEEEE-------C-SS-ECECEECCCTEEEEEE-TTTEEEE
T ss_pred             EEEEEcCC-CeEEEEECCCCCEEEEe-------c-CCCccCCceeeCCEEEEEe-CCCEEEE
Confidence            66666544 4444447 456644332       1 2223332233344455555 5566554

...

>KOG3914|consensus

Probab=98.45  E-value=5.6e-06  Score=64.61  Aligned_cols=157  Identities=18%  Similarity=0.359  Sum_probs=96.6

Q ss_pred             ceeeEEcCCCcEEEEcCCCCeEEEEc--CCCc---EEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeC--CCCEEEEE
Q psy13998        100 PRGIAVGPDNSIVVADSSNHRVQVFQ--SDGT---FVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDS--NNHRVQIF  171 (319)
Q Consensus       100 ~~~l~~~~~g~~~~~~~~~~~i~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~--~~~~i~~~  171 (319)
                      +..+..++.+++++.+.......+++  .+.+   ......       ....+.++.+..+. ...++..  ....+.+|
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~  137 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-------VPKRPTAISFIREDTSVLVADKAGDVYSFDIL  137 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-------cccCcceeeeeeccceEEEEeecCCceeeeee
Confidence            34555667777777766666655554  3222   222221       12455666666533 3333332  22333344


Q ss_pred             ecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcce
Q psy13998        172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRG  250 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  250 (319)
                      ....      +.       .....+|......++++||+++++++..+..|++-...+ -.+..+-     .+|...+..
T Consensus       138 s~~~------~~-------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-----lGH~eFVS~  199 (390)
T KOG3914|consen  138 SADS------GR-------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-----LGHKEFVST  199 (390)
T ss_pred             cccc------cC-------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-----cccHhheee
Confidence            3220      11       112246677788999999999999999999999876433 2233331     467778888


Q ss_pred             EEEcCCCcEEEEeCCCCEEEEEc-CCCceEEee
Q psy13998        251 VAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAF  282 (319)
Q Consensus       251 i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~  282 (319)
                      +++.++ +.++++++|++|++|| .+|+.+.++
T Consensus       200 isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  200 ISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             eeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence            998765 6789999999999999 578776654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.43  E-value=0.00025  Score=54.42  Aligned_cols=194  Identities=19%  Similarity=0.233  Sum_probs=101.1

Q ss_pred             EEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecC--c-eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEe-cC
Q psy13998         62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW--P-RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKF-GS  136 (319)
Q Consensus        62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~-~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~-~~  136 (319)
                      .+..++.+|+. +.++.+..    ++..+++.......  + .......++.+|+.. .++.++.+| .+|+.+... ..
T Consensus        32 ~~~~~~~v~~~-~~~~~l~~----~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~-~~~~l~~~d~~tG~~~W~~~~~  105 (238)
T PF13360_consen   32 AVPDGGRVYVA-SGDGNLYA----LDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT-SDGSLYALDAKTGKVLWSIYLT  105 (238)
T ss_dssp             EEEETTEEEEE-ETTSEEEE----EETTTSEEEEEEECSSCGGSGEEEETTEEEEEE-TTSEEEEEETTTSCEEEEEEE-
T ss_pred             EEEeCCEEEEE-cCCCEEEE----EECCCCCEEEEeeccccccceeeeccccccccc-ceeeeEecccCCcceeeeeccc
Confidence            44345555555 57889999    89877776654442  2 111233345666655 456999999 899998874 32


Q ss_pred             CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc-CC---CCCCceeEEEcCCCcE
Q psy13998        137 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK-AG---QLEHPHYIAVSNTNRV  212 (319)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~g~~  212 (319)
                      ... ..........++.  +..++....++.+..+|+++      |+.+......... ..   ......+-.+..++.+
T Consensus       106 ~~~-~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (238)
T PF13360_consen  106 SSP-PAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRV  176 (238)
T ss_dssp             SSC-TCSTB--SEEEEE--TTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEE
T ss_pred             ccc-ccccccccCceEe--cCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEECCEE
Confidence            211 1111222334444  44445455578999999773      3444444321100 00   0111122222234566


Q ss_pred             EEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEE
Q psy13998        213 IVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLR  280 (319)
Q Consensus       213 ~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~  280 (319)
                      |++.. ++.+..+|. +++.+...      .  ...+..+....++.+|+.+ .++.|+.|| .+|+.+.
T Consensus       177 ~~~~~-~g~~~~~d~~tg~~~w~~------~--~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  177 YVSSG-DGRVVAVDLATGEKLWSK------P--ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEECC-TSSEEEEETTTTEEEEEE------C--SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEE
T ss_pred             EEEcC-CCeEEEEECCCCCEEEEe------c--CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEe
Confidence            66554 444444585 45544322      1  1123332333445666666 789999999 4666554

...

>KOG2315|consensus

Probab=98.39  E-value=0.00026  Score=58.05  Aligned_cols=135  Identities=16%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEE--eCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        118 NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS--DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       118 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      +.+++.++.+|.....-      ......++++.|+++++-|..  +..--.+.+||+++       .++..++.     
T Consensus       250 Eq~Lyll~t~g~s~~V~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-------~~v~df~e-----  311 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVP------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-------KPVFDFPE-----  311 (566)
T ss_pred             cceEEEEEecCceEEEe------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-------CEeEeCCC-----
Confidence            34677777655443322      222356799999999965544  44557899999987       34444421     


Q ss_pred             CCCCCceeEEEcCCCcEEEE-eCC--CCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC------
Q psy13998        196 GQLEHPHYIAVSNTNRVIVS-DSN--NHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG------  265 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g~~~v~-~~~--~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~------  265 (319)
                         ..-+.+-++|.|++++. +.+  .|.|-+||... +.+..+.        ....+-..|+|||++++++..      
T Consensus       312 ---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--------a~~tt~~eW~PdGe~flTATTaPRlrv  380 (566)
T KOG2315|consen  312 ---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--------AANTTVFEWSPDGEYFLTATTAPRLRV  380 (566)
T ss_pred             ---CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc--------cCCceEEEEcCCCcEEEEEeccccEEe
Confidence               12245889999987654 443  48899999543 3333331        123355789999998887764      


Q ss_pred             CCEEEEEcCCCceEEe
Q psy13998        266 NNRIQIFTPDGQFLRA  281 (319)
Q Consensus       266 ~~~i~~~~~~g~~~~~  281 (319)
                      |+.+.+|+.+|..+..
T Consensus       381 dNg~KiwhytG~~l~~  396 (566)
T KOG2315|consen  381 DNGIKIWHYTGSLLHE  396 (566)
T ss_pred             cCCeEEEEecCceeeh
Confidence            6788999999987654

>KOG2315|consensus

Probab=98.39  E-value=0.00036  Score=57.32  Aligned_cols=105  Identities=12%  Similarity=0.223  Sum_probs=74.0

Q ss_pred             CCceeEEEcCCCcEEEE--eCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC---CCCEEEEEc
Q psy13998        199 EHPHYIAVSNTNRVIVS--DSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS---GNNRIQIFT  273 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~---~~~~i~~~~  273 (319)
                      ..++++.|+++++-|.+  +..-..+.+||.++..+..++..        .=+.+-|+|.|++++.++   ..|.+.+||
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg--------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG--------PRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC--------CccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            45688999999976544  45567899999999999888421        225688999998766655   357899999


Q ss_pred             C-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC------CCeEEeC
Q psy13998        274 P-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE------NHRIQVF  319 (319)
Q Consensus       274 ~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~------~~~i~v~  319 (319)
                      . +-+.+..+        ....-+-+.|+|||.+++++..      |+.++||
T Consensus       343 v~n~K~i~~~--------~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  343 VPNRKLIAKF--------KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             ccchhhcccc--------ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence            4 54444444        1223455789999998877765      4555555

>KOG4532|consensus

Probab=98.34  E-value=0.00046  Score=51.56  Aligned_cols=229  Identities=12%  Similarity=0.079  Sum_probs=126.2

Q ss_pred             cceEEcCCC-----cEEEEeCCCCeEEEeccccccccceeeEEe--cCceeeEEcCC-----CcEEEEcCCCCeEEEEcC
Q psy13998         59 RGIAVGPDN-----SIVVADSSNHRVQVCFPHFDLKTNCVFLAF--TWPRGIAVGPD-----NSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        59 ~~v~~~~~g-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-----g~~~~~~~~~~~i~~~~~  126 (319)
                      .+|.|.|-.     .+++.++..|...+    |...+++....+  ....++.+...     -.+++ ++.+.++++++.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~----~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i-~sndht~k~~~~  145 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDL----FACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNI-ASNDHTGKTMVV  145 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeee----ecccCcccceeeecccccchhhhhhhcccccceee-ccCCcceeEEEE
Confidence            456665531     25666667888888    777655443322  13344443321     12333 345667777775


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      ++...+.....    .. -...++++++++++.++.+....|..|.++.     ++..+.....    ......-.+..|
T Consensus       146 ~~~s~~~~~h~----~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~-----~sey~~~~~~----a~t~D~gF~~S~  211 (344)
T KOG4532|consen  146 SGDSNKFAVHN----QN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD-----ESEYIENIYE----APTSDHGFYNSF  211 (344)
T ss_pred             ecCcccceeec----cc-cceeeeEEcCCCceEEEecCCCcceEEEeCC-----ccceeeeeEe----cccCCCceeeee
Confidence            54433322110    01 1257889999999999999889999997764     2222222111    111223345677


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCC--cEEEEeCCCCEEEEEc-CCCceEEe
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFT-PDGQFLRA  281 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g--~~~v~~~~~~~i~~~~-~~g~~~~~  281 (319)
                      +.....|+++..++.+.+||...  .+......  ..+.+-...+...|++.|  .+++-.-.-+.+.+.| .+++..+.
T Consensus       212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss--trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISS--TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             ccCcceEEEEecCCcEEEEEecccccchhhhcc--cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            78888999999999999999643  22222211  112344556777888765  3344434457899998 45554444


Q ss_pred             ecccCCC--CCCCCCcceEEEccCCc-EEE
Q psy13998        282 FGCWGSG--DGEFKGLEGVAVMSNGN-ILV  308 (319)
Q Consensus       282 ~~~~~~~--~~~~~~~~~l~~~~~g~-~~v  308 (319)
                      +..+...  ......+.+-.++.++. .++
T Consensus       290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v  319 (344)
T KOG4532|consen  290 IVIPDDVERKHNTQHIFGTNFNNENESNDV  319 (344)
T ss_pred             EecCccccccccccccccccccCCCccccc
Confidence            3222111  11112355666665554 444

>KOG1920|consensus

Probab=98.33  E-value=0.00017  Score=64.64  Aligned_cols=207  Identities=14%  Similarity=0.155  Sum_probs=120.6

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc--
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR--  176 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~--  176 (319)
                      .+.++.+..+.+-++.....|.|.+.|+....+.....      ....+.+++|+||+.+++..+....+.+..-+=.  
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~------vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN------VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccceeeeee------ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence            45667777676655555567778887865544444321      2256788999999988877777666665433110  


Q ss_pred             ---eee----ecCcee--------eeec-ccCC-----c---------CCCCCCceeEEEcCCCcEEEE-----eCCCCe
Q psy13998        177 ---VFQ----SDGTFV--------GKFG-SMGN-----K---------AGQLEHPHYIAVSNTNRVIVS-----DSNNHR  221 (319)
Q Consensus       177 ---~~~----~~~~~~--------~~~~-~~~~-----~---------~~~~~~~~~~~~~~~g~~~v~-----~~~~~~  221 (319)
                         .+.    ..++++        ..+. ..+.     .         .....+-..+.|--||.++++     ......
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence               000    000111        0110 0000     0         001122345778788888876     333478


Q ss_pred             EEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC---CCCEEEEEcCCCceEEeecccCCCCCCCCCcceE
Q psy13998        222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS---GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGV  298 (319)
Q Consensus       222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~---~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  298 (319)
                      |++||.+|..-..-      ......-..++|-|.|.++++-.   .++.|.+|.++|-.-..+..+-  +.....+..+
T Consensus       224 irV~drEg~Lns~s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~--p~de~~ve~L  295 (1265)
T KOG1920|consen  224 IRVYDREGALNSTS------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF--PLDEKEVEEL  295 (1265)
T ss_pred             EEEecccchhhccc------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC--cccccchhee
Confidence            99999886433221      11111235688999998777643   4568999999886554443221  1222338899


Q ss_pred             EEccCCcEEEE---eCCCCeEEeC
Q psy13998        299 AVMSNGNILVC---DRENHRIQVF  319 (319)
Q Consensus       299 ~~~~~g~~~v~---~~~~~~i~v~  319 (319)
                      +|+.++.+++.   ......|++|
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEE
Confidence            99999998777   6677778887

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.30  E-value=0.0004  Score=56.10  Aligned_cols=66  Identities=30%  Similarity=0.391  Sum_probs=45.5

Q ss_pred             CcceEEEcCC-------CcEEEEeCCCCEEEEEcCCCc---eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC-CCe
Q psy13998        247 FPRGVAVDDQ-------GYISVGDSGNNRIQIFTPDGQ---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE-NHR  315 (319)
Q Consensus       247 ~~~~i~~~~~-------g~~~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~-~~~  315 (319)
                      .|.+|+|...       +.+|++...+-.+...+++|+   ....+-..    ....+|.++++.+||.+|+++.. ++.
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~----d~~gR~~dV~v~~DGallv~~D~~~g~  390 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSG----DLGGRPRDVAVAPDGALLVLTDQGDGR  390 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEec----CCCCcccceEECCCCeEEEeecCCCCe
Confidence            3578888632       578888887776777777776   23222110    12268999999999998888877 655


Q ss_pred             E
Q psy13998        316 I  316 (319)
Q Consensus       316 i  316 (319)
                      |
T Consensus       391 i  391 (399)
T COG2133         391 I  391 (399)
T ss_pred             E
Confidence            4

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.30  E-value=0.0014  Score=54.22  Aligned_cols=65  Identities=11%  Similarity=0.207  Sum_probs=37.3

Q ss_pred             CcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEEc---CCCcEEEEcCCCCeEEEEc-CCCcEEEEecC
Q psy13998         67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVG---PDNSIVVADSSNHRVQVFQ-SDGTFVGKFGS  136 (319)
Q Consensus        67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~  136 (319)
                      +..++.++.++.+..    +|..+++..........+.-.   .++.+++ ...++.++.+| .+|+.+.++..
T Consensus       105 ~~~v~v~~~~g~l~a----ld~~tG~~~W~~~~~~~~~~~p~v~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       105 GGLVFVGTEKGEVIA----LDAEDGKELWRAKLSSEVLSPPLVANGLVVV-RTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             CCEEEEEcCCCEEEE----EECCCCcEeeeeccCceeecCCEEECCEEEE-ECCCCeEEEEEcCCCceeeEEcc
Confidence            344444556788888    777666555433322111111   1344444 45678899999 57887776643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.28  E-value=0.0015  Score=54.05  Aligned_cols=145  Identities=12%  Similarity=0.141  Sum_probs=75.4

Q ss_pred             CcEEEEeCCCCeEEEeccccccccceeeEEecCc----eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC
Q psy13998         67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP----RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA  141 (319)
Q Consensus        67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~  141 (319)
                      +..++.++.++.|..    +|..+++........    ...+++ ++.+| .+..++.++.+| .+|+.+......+.. 
T Consensus        65 ~~~v~v~~~~g~v~a----~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~-v~~~~g~l~ald~~tG~~~W~~~~~~~~-  137 (377)
T TIGR03300        65 GGKVYAADADGTVVA----LDAETGKRLWRVDLDERLSGGVGAD-GGLVF-VGTEKGEVIALDAEDGKELWRAKLSSEV-  137 (377)
T ss_pred             CCEEEEECCCCeEEE----EEccCCcEeeeecCCCCcccceEEc-CCEEE-EEcCCCEEEEEECCCCcEeeeeccCcee-
Confidence            334445556788988    887766655433322    123332 34455 455678999999 589888776432110 


Q ss_pred             CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCe
Q psy13998        142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  221 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  221 (319)
                           .....+ .++.+|+ ...++.++.+|.+.      |+.+..+............ ....+. ++ .++.+..++.
T Consensus       138 -----~~~p~v-~~~~v~v-~~~~g~l~a~d~~t------G~~~W~~~~~~~~~~~~~~-~sp~~~-~~-~v~~~~~~g~  201 (377)
T TIGR03300       138 -----LSPPLV-ANGLVVV-RTNDGRLTALDAAT------GERLWTYSRVTPALTLRGS-ASPVIA-DG-GVLVGFAGGK  201 (377)
T ss_pred             -----ecCCEE-ECCEEEE-ECCCCeEEEEEcCC------CceeeEEccCCCceeecCC-CCCEEE-CC-EEEEECCCCE
Confidence                 011112 2345444 55678899999863      3444333221110000000 111222 23 4455566778


Q ss_pred             EEEEeC-CCCEEEE
Q psy13998        222 VQIFDV-NGRVITS  234 (319)
Q Consensus       222 i~~~~~-~~~~~~~  234 (319)
                      ++.+|. +|+.+.+
T Consensus       202 v~ald~~tG~~~W~  215 (377)
T TIGR03300       202 LVALDLQTGQPLWE  215 (377)
T ss_pred             EEEEEccCCCEeee
Confidence            888885 6665544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.28  E-value=0.00078  Score=50.86  Aligned_cols=214  Identities=11%  Similarity=0.127  Sum_probs=108.6

Q ss_pred             ceEEcCCCcEEEEeCCCCeEEEe--cccccccccee-eEEecCc--eeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEe
Q psy13998         60 GIAVGPDNSIVVADSSNHRVQVC--FPHFDLKTNCV-FLAFTWP--RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKF  134 (319)
Q Consensus        60 ~v~~~~~g~~~~~~~~~~~v~~~--~~~~~~~~~~~-~~~~~~~--~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~  134 (319)
                      .++.+.+|++++.- .|..|.+-  ..+|..--++. +..-+.|  .-++|+||+.+++.+...+.|.+||..|..+..+
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            46778899977654 34455441  01111100010 0011122  5799999999999999999999999888777666


Q ss_pred             cCCCccCCCC-CCceeEEEeCCC-------eEEEEeCCCCEEEEEecC---CceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        135 GSMGNKAGQL-EHPHYIAVSNTN-------RVIVSDSNNHRVQIFDVN---GRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       135 ~~~~~~~~~~-~~~~~l~~~~~g-------~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      .......+.. ..+.++.|.+..       .+++. ...|.++-|-+.   .+.+    +....+..   .......+.+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y~G~L~Sy~vs~gt~q~y----~e~hsfsf---~~~yp~Gi~~  152 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-NYRGQLRSYLVSVGTNQGY----QENHSFSF---SSHYPHGINS  152 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEE-eccceeeeEEEEcccCCcc----eeeEEEEe---cccCCCceeE
Confidence            4322111111 233444444321       22222 233444433321   0000    11111100   0122345677


Q ss_pred             EEEcCCCcEEEEeC-CCC----------eEEEEe-CCCCE----EEEe----------------CCC---CCCcccccCc
Q psy13998        204 IAVSNTNRVIVSDS-NNH----------RVQIFD-VNGRV----ITSF----------------GSE---GSEEGQLKFP  248 (319)
Q Consensus       204 ~~~~~~g~~~v~~~-~~~----------~i~~~~-~~~~~----~~~~----------------~~~---~~~~~~~~~~  248 (319)
                      +.++|..+++++++ ...          -+..|- .++..    +...                ...   .........+
T Consensus       153 ~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i  232 (282)
T PF15492_consen  153 AVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI  232 (282)
T ss_pred             EEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCce
Confidence            88898877766543 221          233333 12110    0000                000   0001123456


Q ss_pred             ceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEee
Q psy13998        249 RGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAF  282 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~  282 (319)
                      ..|.++|||.++++-..+|.|.+|+ +.-+..+.+
T Consensus       233 ~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  233 FKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             EEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            7899999999999999999999999 554444444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.28  E-value=0.00082  Score=50.97  Aligned_cols=187  Identities=15%  Similarity=0.185  Sum_probs=113.4

Q ss_pred             CCcceEEcCCCcEEEEeCCCC--eEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEcC-CC
Q psy13998         57 WPRGIAVGPDNSIVVADSSNH--RVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQS-DG  128 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~  128 (319)
                      .-.++.+..+|.+|-+.+..|  .|+.    +++.+++......     .-.++++. ++++|...-.++...+||. +-
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~----~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRK----VDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEE----EETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEE----EECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccc
Confidence            347899977899999887665  7888    8888777655433     23577776 4578888889999999995 45


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      +.+.++...       ..-.+++.+ ...++++++ ..++..+|+..-      +....+..... .......+-+.+- 
T Consensus       121 ~~~~~~~y~-------~EGWGLt~d-g~~Li~SDG-S~~L~~~dP~~f------~~~~~i~V~~~-g~pv~~LNELE~i-  183 (264)
T PF05096_consen  121 KKIGTFPYP-------GEGWGLTSD-GKRLIMSDG-SSRLYFLDPETF------KEVRTIQVTDN-GRPVSNLNELEYI-  183 (264)
T ss_dssp             EEEEEEE-S-------SS--EEEEC-SSCEEEE-S-SSEEEEE-TTT-------SEEEEEE-EET-TEE---EEEEEEE-
T ss_pred             eEEEEEecC-------CcceEEEcC-CCEEEEECC-ccceEEECCccc------ceEEEEEEEEC-CEECCCcEeEEEE-
Confidence            667766433       233788844 345666654 678999998743      22222211100 0111223445443 


Q ss_pred             CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC---------CcccccCcceEEEcCCC-cEEEEeCC
Q psy13998        209 TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS---------EEGQLKFPRGVAVDDQG-YISVGDSG  265 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~g-~~~v~~~~  265 (319)
                      +|.+|+-.-....|.++|+ +|.....+...+-         ......-.++||++|+. ++|+++-.
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            6888888888899999996 5766665532110         00112346899999874 68888753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.25  E-value=1.7e-06  Score=45.19  Aligned_cols=37  Identities=24%  Similarity=0.507  Sum_probs=33.1

Q ss_pred             ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        277 QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+..+      .+|...+++|+++|++.++++++.|+.|++|
T Consensus         2 ~~~~~~------~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vw   38 (39)
T PF00400_consen    2 KCVRTF------RGHSSSINSIAWSPDGNFLASGSSDGTIRVW   38 (39)
T ss_dssp             EEEEEE------ESSSSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred             eEEEEE------cCCCCcEEEEEEecccccceeeCCCCEEEEE
Confidence            456666      6788999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.24  E-value=2e-05  Score=49.01  Aligned_cols=68  Identities=26%  Similarity=0.397  Sum_probs=51.4

Q ss_pred             eEEEcCC-CcEEEEeCC-----------------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEe
Q psy13998        203 YIAVSNT-NRVIVSDSN-----------------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGD  263 (319)
Q Consensus       203 ~~~~~~~-g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~  263 (319)
                      +++++++ |.+|++++.                 +|++..||+..+....+      ...+..|++|++++|+. ++++.
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl------~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL------LDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE------EEEESSEEEEEE-TTSSEEEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe------hhCCCccCeEEEcCCCCEEEEEe
Confidence            5778887 889988764                 47999999988777666      56678999999999986 88888


Q ss_pred             CCCCEEEEEcCCC
Q psy13998        264 SGNNRIQIFTPDG  276 (319)
Q Consensus       264 ~~~~~i~~~~~~g  276 (319)
                      ....+|..|-..|
T Consensus        76 t~~~Ri~rywl~G   88 (89)
T PF03088_consen   76 TGRYRILRYWLKG   88 (89)
T ss_dssp             GGGTEEEEEESSS
T ss_pred             ccCceEEEEEEeC
Confidence            8889998886554

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1409|consensus

Probab=98.16  E-value=0.00045  Score=53.41  Aligned_cols=156  Identities=10%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEc--C-
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQ--S-  126 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~--~-  126 (319)
                      .|...+.++.|+..-+.+++.+.|..+..    --.+.+..+.+.   ..+.++.++-.  .-..+...+.|....  . 
T Consensus       112 ~h~~~v~~~if~~~~e~V~s~~~dk~~~~----hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~  185 (404)
T KOG1409|consen  112 AHQARVSAIVFSLTHEWVLSTGKDKQFAW----HCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQN  185 (404)
T ss_pred             hhhcceeeEEecCCceeEEEeccccceEE----EeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeec
Confidence            34566778888877777777777766643    111212211111   12222222211  222233334443333  2 


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .-..+.++      .++...+.++++++...+++++..+.++.+||+.+....    . ...      ..+......+..
T Consensus       186 ~~~~i~~~------~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~----~-~el------~gh~~kV~~l~~  248 (404)
T KOG1409|consen  186 GCQLITTF------NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT----A-YEL------QGHNDKVQALSY  248 (404)
T ss_pred             CCceEEEE------cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce----e-eee------ccchhhhhhhhh
Confidence            22344444      567778899999999999999999999999999875211    0 000      222233333444


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCCCCE
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVNGRV  231 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~~~~  231 (319)
                      -+--+.+++...++.|.+|+.+-+.
T Consensus       249 ~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  249 AQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhheeeeeccCCCeEEEEecccee
Confidence            3444567788889999999977543

>KOG0882|consensus

Probab=98.16  E-value=0.00028  Score=56.47  Aligned_cols=240  Identities=14%  Similarity=0.123  Sum_probs=143.8

Q ss_pred             hhccccceeeeecccCCCC-----------CcCCCCcceEEcCCCcEEEEeCC-CCeEEEeccccccccceeeE---Eec
Q psy13998         34 QYLQKRRLQFKIGSRGSEP-----------GCFTWPRGIAVGPDNSIVVADSS-NHRVQVCFPHFDLKTNCVFL---AFT   98 (319)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~g~~~~~~~~-~~~v~~~~~~~~~~~~~~~~---~~~   98 (319)
                      .+..+++.+...+.|+...           .|+..+.+++.+-+|.++.+... |+.+++    ++...-....   ...
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv----fDvEn~DminmiKL~~   96 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV----FDVENFDMINMIKLVD   96 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE----EEeeccchhhhccccc
Confidence            4555666666666666543           34566788899999999999666 899999    7775433221   112


Q ss_pred             CceeeEEc-CCC----cEEEEcCCCCeEEEEcCCCcE--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEE
Q psy13998         99 WPRGIAVG-PDN----SIVVADSSNHRVQVFQSDGTF--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF  171 (319)
Q Consensus        99 ~~~~l~~~-~~g----~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~  171 (319)
                      -|..+.+. ..|    .+-++...++.+.++|.-+..  ...+.     .-|...+..+.+.+.+...++....|.|..|
T Consensus        97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk-----klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW  171 (558)
T KOG0882|consen   97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK-----KLHFSPVKKIRYNQAGDSAVSIDISGMVEYW  171 (558)
T ss_pred             CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec-----ccccCceEEEEeeccccceeeccccceeEee
Confidence            33333333 223    355566677899999944332  22221     3466777888888888888888888999999


Q ss_pred             ecCCceeeecCceeeeecccC---CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC-------
Q psy13998        172 DVNGRVFQSDGTFVGKFGSMG---NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS-------  240 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-------  240 (319)
                      ...+..--+.+.+...+....   ........|.++.++|++..+.+-..+..|+++.. .|+.++.+.....       
T Consensus       172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k  251 (558)
T KOG0882|consen  172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK  251 (558)
T ss_pred             cCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence            887511111111111111110   01223456889999999988888788899999985 4444443321110       


Q ss_pred             --------------------CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeec
Q psy13998        241 --------------------EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFG  283 (319)
Q Consensus       241 --------------------~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~  283 (319)
                                          .......-..++|+..|++++-+.- =-|.+++. ++...+.++
T Consensus       252 s~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~-~gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  252 SPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI-LGIKVINLDTNTVVRILG  314 (558)
T ss_pred             cccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc-eeEEEEEeecCeEEEEec
Confidence                                0000111245788888887766553 23667773 455555554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.13  E-value=0.0024  Score=50.34  Aligned_cols=233  Identities=14%  Similarity=0.164  Sum_probs=119.3

Q ss_pred             cceEEcCCCcEEEEeC----------CCCeEEEeccccccccceeeEEec-----------CceeeEEcCCCcE-EEEc-
Q psy13998         59 RGIAVGPDNSIVVADS----------SNHRVQVCFPHFDLKTNCVFLAFT-----------WPRGIAVGPDNSI-VVAD-  115 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~g~~-~~~~-  115 (319)
                      -.+.++|+|+.+.+.+          ....|.+    ||..+.....++.           .+..++++.+|+. |+.. 
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~----~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~  114 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEI----WDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF  114 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEE----EETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEE----EecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc
Confidence            3477899998555432          2336778    8877665544322           2344567777764 3332 


Q ss_pred             CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        116 SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       116 ~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      +-...|.+.| ...+.+.++..++          |.-+-| ...-|.+-+.||++..+.++.     +|+...+....-.
T Consensus       115 TPa~SVtVVDl~~~kvv~ei~~PG----------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~-----~Gk~~~~~t~~F~  179 (342)
T PF06433_consen  115 TPATSVTVVDLAAKKVVGEIDTPG----------CWLIYPSGNRGFSMLCGDGSLLTVTLDA-----DGKEAQKSTKVFD  179 (342)
T ss_dssp             SSSEEEEEEETTTTEEEEEEEGTS----------EEEEEEEETTEEEEEETTSCEEEEEETS-----TSSEEEEEEEESS
T ss_pred             CCCCeEEEEECCCCceeeeecCCC----------EEEEEecCCCceEEEecCCceEEEEECC-----CCCEeEeeccccC
Confidence            2235688888 5566777775443          222223 123366667788887776552     2222211100000


Q ss_pred             cCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCCCEEEE---eCCCCCC-cccccCc---ceEEEcCC-CcEEEEeC
Q psy13998        194 KAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITS---FGSEGSE-EGQLKFP---RGVAVDDQ-GYISVGDS  264 (319)
Q Consensus       194 ~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~-~~~~~~~---~~i~~~~~-g~~~v~~~  264 (319)
                      .....- ...-++. ..+++++. +.+|.|+..+..+.....   +...... ....-.|   .-+++++. +++|+.-.
T Consensus       180 ~~~dp~-f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh  257 (342)
T PF06433_consen  180 PDDDPL-FEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH  257 (342)
T ss_dssp             TTTS-B--S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred             CCCccc-ccccceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence            000000 0111223 34456654 457889998876643322   2111000 0001112   34788764 67777643


Q ss_pred             C-------C--CEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEeC
Q psy13998        265 G-------N--NRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF  319 (319)
Q Consensus       265 ~-------~--~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v~  319 (319)
                      .       +  -.|.+|| .+++.+..+..       ...+.+|+++.|.+  +|+....++.|.+|
T Consensus       258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  258 QGGEGSHKDPGTEVWVYDLKTHKRVARIPL-------EHPIDSIAVSQDDKPLLYALSAGDGTLDVY  317 (342)
T ss_dssp             E--TT-TTS-EEEEEEEETTTTEEEEEEEE-------EEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred             CCCCCCccCCceEEEEEECCCCeEEEEEeC-------CCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence            1       1  2578888 46777777731       23467899998876  45566777777765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920|consensus

Probab=98.12  E-value=0.0025  Score=57.59  Aligned_cols=200  Identities=13%  Similarity=0.107  Sum_probs=120.2

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eE-EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FL-AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVG  132 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  132 (319)
                      ..+.++.|-.+++-++.....|.|.+    .+..+...  .. .-..+.+++|+||+.+++..++.+++.+.+.+-.++.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iil----vd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIIL----VDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEE----EcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence            46788888877776666677888888    45443222  11 2237788999999987776666666666543221111


Q ss_pred             EecC----------------------CCccC--------------C---CCCCceeEEEeCCCeEEEE-----eCCCCEE
Q psy13998        133 KFGS----------------------MGNKA--------------G---QLEHPHYIAVSNTNRVIVS-----DSNNHRV  168 (319)
Q Consensus       133 ~~~~----------------------~~~~~--------------~---~~~~~~~l~~~~~g~~~~~-----~~~~~~i  168 (319)
                      ....                      .|...              +   ....=..+.|..||.+|++     ..+...|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            1000                      00000              0   0111234888889988876     3333789


Q ss_pred             EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC---CCCeEEEEeCCCCEEEEeCCCCCCcccc
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNGRVITSFGSEGSEEGQL  245 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~  245 (319)
                      ++||.+|.. .....            .....-.++++-|.|.++.+-.   .++.|..|.++|-....+...-  +...
T Consensus       225 rV~drEg~L-ns~se------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~--p~de  289 (1265)
T KOG1920|consen  225 RVYDREGAL-NSTSE------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF--PLDE  289 (1265)
T ss_pred             EEecccchh-hcccC------------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC--cccc
Confidence            999987532 11111            1111224588999998876643   4567999999986555443221  1122


Q ss_pred             cCcceEEEcCCCcEEEE---eCCCCEEEEEcC
Q psy13998        246 KFPRGVAVDDQGYISVG---DSGNNRIQIFTP  274 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~---~~~~~~i~~~~~  274 (319)
                      ..+..++|+.++.+++.   ......|++|..
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             cchheeeecCCCCceeeeecccccceEEEEEe
Confidence            23688999999988777   556667999984

>KOG2041|consensus

Probab=98.11  E-value=0.00011  Score=62.19  Aligned_cols=228  Identities=11%  Similarity=0.034  Sum_probs=131.8

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccce---eeE----------------EecCceeeEEcCCCcEEEEcCCC
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC---VFL----------------AFTWPRGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~~----------------~~~~~~~l~~~~~g~~~~~~~~~  118 (319)
                      .++++|+.+..+++.++.+|.+++    ..+.+..   ...                |-..+.-+.|+.+.+.+.+...+
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKV----lKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKV----LKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEE----EEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            467899988889999999999999    4443221   111                11233445666555556666667


Q ss_pred             CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      |-|.+|- -+|.....+..    ......+.+++|..+|..+.....||.|.+=.++|..+       ..-..      .
T Consensus        93 GlIiVWmlykgsW~EEMiN----nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-------wgKeL------k  155 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMIN----NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-------WGKEL------K  155 (1189)
T ss_pred             ceEEEEeeecccHHHHHhh----CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-------cchhc------c
Confidence            8888887 34443322211    12234567889999997777777888887666655321       11101      1


Q ss_pred             CCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC------CCCcccccCcceEEE--------cCCCcEEEEe
Q psy13998        198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE------GSEEGQLKFPRGVAV--------DDQGYISVGD  263 (319)
Q Consensus       198 ~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~--------~~~g~~~v~~  263 (319)
                      ......+.+++|.+..+..-.++.+.+||..|.....+...      +........+.++.+        -|+.-.++.+
T Consensus       156 g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc  235 (1189)
T KOG2041|consen  156 GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC  235 (1189)
T ss_pred             hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE
Confidence            12234577888887777777788999999876433222110      000001111223333        2455577888


Q ss_pred             CCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        264 SGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       264 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ..+|++.+... +...-..+      +.. ..+.+..|+++|.+++.++.+
T Consensus       236 y~nGr~QiMR~eND~~Pvv~------dtg-m~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  236 YANGRMQIMRSENDPEPVVV------DTG-MKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             EcCceehhhhhcCCCCCeEE------ecc-cEeecceecCCCcEEEEccCc
Confidence            88888877762 22111122      112 357778888888877766544

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.05  E-value=0.0031  Score=48.84  Aligned_cols=147  Identities=15%  Similarity=0.164  Sum_probs=80.4

Q ss_pred             CceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc---cCCcCCCCCCceeEEEcCCCcEEEEeCC-CCe
Q psy13998        146 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS---MGNKAGQLEHPHYIAVSNTNRVIVSDSN-NHR  221 (319)
Q Consensus       146 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~  221 (319)
                      .++.+++ .++.+++.++.-..+...+..-       .+...+..   ....+...++.+++++....-.|++... ...
T Consensus       104 diHdia~-~~~~l~fVNT~fSCLatl~~~~-------SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~  175 (335)
T TIGR03032       104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDY-------SFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDV  175 (335)
T ss_pred             chhheee-cCCcEEEEECcceeEEEECCCC-------ccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCC
Confidence            4567777 5566777666555555444321       22222211   1112344567789999754456665432 222


Q ss_pred             EEEEe---CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcce
Q psy13998        222 VQIFD---VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       222 i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      ..-|-   .+|..+..+.........+..|.+-.|. +|++|++++..+.+..+|++ |+.....       .-...+.+
T Consensus       176 ~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va-------~vpG~~rG  247 (335)
T TIGR03032       176 ADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVA-------FLPGFTRG  247 (335)
T ss_pred             cccccccccCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEE-------ECCCCCcc
Confidence            22232   1233333332111112234455555564 58999999999999999986 7654443       12346889


Q ss_pred             EEEccCCcEEEEe
Q psy13998        298 VAVMSNGNILVCD  310 (319)
Q Consensus       298 l~~~~~g~~~v~~  310 (319)
                      ++|.  |++++.+
T Consensus       248 L~f~--G~llvVg  258 (335)
T TIGR03032       248 LAFA--GDFAFVG  258 (335)
T ss_pred             ccee--CCEEEEE
Confidence            9998  7765554

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.01  E-value=1.2e-05  Score=38.08  Aligned_cols=27  Identities=59%  Similarity=0.800  Sum_probs=25.1

Q ss_pred             CCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        293 KGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       293 ~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..|.+++++++|++|+++..+++|++|
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            469999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.98  E-value=0.0026  Score=51.23  Aligned_cols=113  Identities=24%  Similarity=0.376  Sum_probs=72.7

Q ss_pred             CceeEEEcCCCcEEEEeCCC------CeEEEEeCCCCEEEEeCCCCCC---------cccccCcceEEEcCCCc-EEEEe
Q psy13998        200 HPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVITSFGSEGSE---------EGQLKFPRGVAVDDQGY-ISVGD  263 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~g~-~~v~~  263 (319)
                      .+-+|++.++|.+|++....      ..|+.++.+|+....+..+...         ...-....+|+++|+|+ +|++.
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            56689998889999999988      9999999998887666322210         11123356899999998 55543


Q ss_pred             CC----C-----------CEEEEEcCC--CceEEeecccCCC---CCCCCCcceEEEccCCcEEEEeCC
Q psy13998        264 SG----N-----------NRIQIFTPD--GQFLRAFGCWGSG---DGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       264 ~~----~-----------~~i~~~~~~--g~~~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      -.    +           -+|..|+..  ++....+...-..   ......+..++.-+++++++....
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence            21    1           246666743  4333333221110   013456888999999998887755

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.97  E-value=2.1e-05  Score=40.96  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=29.7

Q ss_pred             cccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      .++...+.+|+++|+++++++++.|+.|++||
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67778899999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PHA02713 hypothetical protein; Provisional

Probab=97.97  E-value=0.0074  Score=52.45  Aligned_cols=180  Identities=10%  Similarity=0.069  Sum_probs=90.1

Q ss_pred             CCcEEEEcCCC------CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCc
Q psy13998        108 DNSIVVADSSN------HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGR  176 (319)
Q Consensus       108 ~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~  176 (319)
                      ++.+|+.++.+      ..+..||+....-..+...   ...... .+++ .-+|++|+.++.+     ..+..||+...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m---~~~R~~-~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM---IKNRCR-FSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC---cchhhc-eeEE-EECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            57899988743      3577888544432222211   000011 2222 2368999998764     34778887643


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC-----------------------CeEEEEeCCCCEEE
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----------------------HRVQIFDVNGRVIT  233 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----------------------~~i~~~~~~~~~~~  233 (319)
                      .      ... ..   ..+.........+  -+|++|+.++.+                       ..+..||+......
T Consensus       378 ~------W~~-~~---~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~  445 (557)
T PHA02713        378 K------WKM-LP---DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE  445 (557)
T ss_pred             e------EEE-CC---CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence            1      111 00   0011111111222  368899887643                       35788887655444


Q ss_pred             EeCCCCCCcccccCcceEEEcCCCcEEEEeCCC------CEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcE
Q psy13998        234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN------NRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNI  306 (319)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~------~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~  306 (319)
                      ......   ..... .+++. -+|++|+.++.+      ..+..||++. ..-..+...   +.. ..-.+++.. +|++
T Consensus       446 ~v~~m~---~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m---~~~-r~~~~~~~~-~~~i  515 (557)
T PHA02713        446 TLPNFW---TGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT---ESR-LSALHTILH-DNTI  515 (557)
T ss_pred             ecCCCC---ccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc---Ccc-cccceeEEE-CCEE
Confidence            432111   01111 22333 247899998753      3477899764 332222110   111 112233333 6799


Q ss_pred             EEEeCCCC
Q psy13998        307 LVCDRENH  314 (319)
Q Consensus       307 ~v~~~~~~  314 (319)
                      |+.|+.++
T Consensus       516 yv~Gg~~~  523 (557)
T PHA02713        516 MMLHCYES  523 (557)
T ss_pred             EEEeeecc
Confidence            99998776

>KOG1064|consensus

Probab=97.97  E-value=0.00011  Score=68.62  Aligned_cols=179  Identities=11%  Similarity=0.171  Sum_probs=118.9

Q ss_pred             ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998         97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus        97 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      ...+..+.-+|..-.|++++.++.+++|. -.+..+..+...+    . ..++.+.++.+|+.+-....||.+-+|....
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g----~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG----N-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC----c-chhhhhhhcccCCceeeeccCCceeecccCC
Confidence            44566677777778999999999999998 5566666665432    2 6678888999998888888899999998763


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe---CCCCeEEEEeCC--CC--EEEEeCCCCCCcccccCc
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD---SNNHRVQIFDVN--GR--VITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~---~~~~~i~~~~~~--~~--~~~~~~~~~~~~~~~~~~  248 (319)
                      +.+       ...      ..|-...+.+.|-.  .++++.   ..++.+..||..  +.  .+.        ..|....
T Consensus      2283 k~~-------~s~------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--------~~H~~ga 2339 (2439)
T KOG1064|consen 2283 KPY-------TSW------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--------TCHDGGA 2339 (2439)
T ss_pred             cce-------ecc------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--------eecCCCc
Confidence            211       111      11111222233322  222222   246778899942  22  222        3456678


Q ss_pred             ceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        249 RGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+++-|.-.++++++.+|.|.+||. .-++...+.           .    ++ ...++++++..|.|+||
T Consensus      2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~-----------~----~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ-----------A----LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred             eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh-----------h----hh-hhheeeccCcccceEEE
Confidence            89999999999999999999999994 434444431           1    33 34588888888989887

>KOG3621|consensus

Probab=97.95  E-value=0.00066  Score=57.50  Aligned_cols=199  Identities=14%  Similarity=0.096  Sum_probs=112.9

Q ss_pred             EEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEEcCC-C-cEEEEe
Q psy13998         62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVFQSD-G-TFVGKF  134 (319)
Q Consensus        62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~-~~~~~~  134 (319)
                      +++..+++++.++..|.+++    |+...+......     .....+.++++..+.++++..+.|.++-.+ + .....+
T Consensus        40 c~dst~~~l~~GsS~G~lyl----~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYL----YNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EeecCCceEEEecccceEEE----EecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            45667888999999999999    777654332211     123445667777788888888888888732 2 111122


Q ss_pred             cCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC-ceeeecCceeeeecccCCcCCCCCCcee-EEEc-CCCc
Q psy13998        135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVFQSDGTFVGKFGSMGNKAGQLEHPHY-IAVS-NTNR  211 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~  211 (319)
                      ..+.. ..|...+++++|++++..++++...|+|....++. ..+...-+.+.            ..+.. +.+| -++.
T Consensus       116 ~t~~d-~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il------------~~ds~IVQlD~~q~~  182 (726)
T KOG3621|consen  116 VTPCD-KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL------------SEDSEIVQLDYLQSY  182 (726)
T ss_pred             ecccc-ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceee------------ccCcceEEeecccce
Confidence            22211 23567899999999999889888889988776664 11100001110            01111 2333 2445


Q ss_pred             EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-----CcEEEEeCCCCEEEEEcCCCceEEee
Q psy13998        212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-----GYISVGDSGNNRIQIFTPDGQFLRAF  282 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----g~~~v~~~~~~~i~~~~~~g~~~~~~  282 (319)
                      ++|+...  +-.+++.+.+.+++++.....   ...+.+.+|-|.     .-.++++.-..++..-|..|.++++.
T Consensus       183 LLVStl~--r~~Lc~tE~eti~QIG~k~R~---~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Th  253 (726)
T KOG3621|consen  183 LLVSTLT--RCILCQTEAETITQIGKKPRK---SLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTH  253 (726)
T ss_pred             ehHhhhh--hhheeecchhHHHHhcCCCcC---CccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEee
Confidence            5555443  344555554445555433211   112455565543     12455556666777777778776654

>KOG4190|consensus

Probab=97.94  E-value=2.6e-05  Score=63.84  Aligned_cols=170  Identities=18%  Similarity=0.289  Sum_probs=98.2

Q ss_pred             eeeEEcCCCcEEEEcCCCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998        101 RGIAVGPDNSIVVADSSNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      ..++.-.+.+-|++++.|++|++|.  +.|..+.+-.-.-.-..|...++++.+-.+-+.+++  .|+.|.+||+--   
T Consensus       739 Rai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFi---  813 (1034)
T KOG4190|consen  739 RAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFI---  813 (1034)
T ss_pred             HHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccc---
Confidence            4444334567899999999999998  333322210000000345667788888877665554  467899999631   


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEe-CCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSD-SNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~-~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                         |+++.+.... ...+....+  .++-. +..+++++ +...+|+++|. .+.....+..... ++......++++.+
T Consensus       814 ---gr~Laq~~da-pk~~a~~~i--kcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna-~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  814 ---GRLLAQMEDA-PKEGAGGNI--KCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA-PGPNALTRAIAVAD  886 (1034)
T ss_pred             ---cchhHhhhcC-cccCCCcee--EecccCcchheeeeccchhhheeeecccccceeeEEeccC-CCCchheeEEEecc
Confidence               1222211100 001111111  22221 34566665 55678999995 4444443321111 22223457899999


Q ss_pred             CCcEEEEeCCCCEEEEEc-CCCceEEee
Q psy13998        256 QGYISVGDSGNNRIQIFT-PDGQFLRAF  282 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~-~~g~~~~~~  282 (319)
                      .|+.++++-.+|.|.+.| .+|+++..+
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccC
Confidence            999999999999999999 688876654

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.93  E-value=3.6e-05  Score=36.48  Aligned_cols=27  Identities=59%  Similarity=1.064  Sum_probs=24.9

Q ss_pred             cCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNRIQIF  272 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~  272 (319)
                      ..|.+++++++|++||++..+++|.+|
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            468999999999999999999999876

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.93  E-value=0.0025  Score=51.38  Aligned_cols=190  Identities=20%  Similarity=0.417  Sum_probs=96.9

Q ss_pred             CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEe----CCCe---E-EEEeCCC--CEEEEEecCCce
Q psy13998        108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS----NTNR---V-IVSDSNN--HRVQIFDVNGRV  177 (319)
Q Consensus       108 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~g~---~-~~~~~~~--~~i~~~~~~~~~  177 (319)
                      ...+++....++.+.+||.+|+.+..+..        ..++.+.+-    -+|+   + .++...+  ++|.+|.++.. 
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~-  137 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQSLPV--------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD-  137 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEEEE-S--------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT-
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEEeecC--------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC-
Confidence            34566766677889999999999988731        233433332    1332   2 2333332  57888866431 


Q ss_pred             eeecCceeeeecc-cCCcCCCCCCceeEEEc--C-CCcEE-EEeCCCCeEEEEeC----CC----CEEEEeCCCCCCccc
Q psy13998        178 FQSDGTFVGKFGS-MGNKAGQLEHPHYIAVS--N-TNRVI-VSDSNNHRVQIFDV----NG----RVITSFGSEGSEEGQ  244 (319)
Q Consensus       178 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~-~g~~~-v~~~~~~~i~~~~~----~~----~~~~~~~~~~~~~~~  244 (319)
                         .+. +..+.. ..........+.++|+-  + +|.+| ++...+|.+..|..    +|    +.++++..       
T Consensus       138 ---~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-------  206 (381)
T PF02333_consen  138 ---TGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-------  206 (381)
T ss_dssp             ---TTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------
T ss_pred             ---CCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-------
Confidence               111 221111 01112233457888873  3 45554 45556788877753    33    34566632       


Q ss_pred             ccCcceEEEcCC-CcEEEEeCCCCEEEEEcC--CC-ceEEeecccCCCCCCCCCcceEEEc--cCC--cEEEEeCCCCeE
Q psy13998        245 LKFPRGVAVDDQ-GYISVGDSGNNRIQIFTP--DG-QFLRAFGCWGSGDGEFKGLEGVAVM--SNG--NILVCDRENHRI  316 (319)
Q Consensus       245 ~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~--~g-~~~~~~~~~~~~~~~~~~~~~l~~~--~~g--~~~v~~~~~~~i  316 (319)
                      ...+.++++|.. |.+|++. ++.-|..|+.  ++ ..-..+... ........+.+|++-  ++|  .+++++-.+++.
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGE-EDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEE-TTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             CCcceEEEEecccCCEEEec-CccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            235788899876 5666665 5677888883  22 111111110 112234568888874  344  477777777777


Q ss_pred             EeC
Q psy13998        317 QVF  319 (319)
Q Consensus       317 ~v~  319 (319)
                      .||
T Consensus       285 ~Vy  287 (381)
T PF02333_consen  285 AVY  287 (381)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.92  E-value=5.6e-05  Score=47.04  Aligned_cols=62  Identities=23%  Similarity=0.326  Sum_probs=44.9

Q ss_pred             eEEEcCC-CcEEEEeCC-----------------CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEe
Q psy13998        250 GVAVDDQ-GYISVGDSG-----------------NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCD  310 (319)
Q Consensus       250 ~i~~~~~-g~~~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~  310 (319)
                      +++++++ |.+|++.+.                 +|++..||+..+....+      ......|++|++++|+. ++++.
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl------~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL------LDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE------EEEESSEEEEEE-TTSSEEEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe------hhCCCccCeEEEcCCCCEEEEEe
Confidence            5788887 888888863                 58999999887776666      35677899999999998 77887


Q ss_pred             CCCCeEE
Q psy13998        311 RENHRIQ  317 (319)
Q Consensus       311 ~~~~~i~  317 (319)
                      ....+|.
T Consensus        76 t~~~Ri~   82 (89)
T PF03088_consen   76 TGRYRIL   82 (89)
T ss_dssp             GGGTEEE
T ss_pred             ccCceEE
Confidence            7766664

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.89  E-value=0.0089  Score=49.77  Aligned_cols=177  Identities=19%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCC-CCCCc----eeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecC
Q psy13998        109 NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAG-QLEHP----HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDG  182 (319)
Q Consensus       109 g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~-~~~~~----~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~  182 (319)
                      +.+++ +..++.+..++ .+|+.+........... .....    ....+ .++.+|+.. .++.+..+|..+      |
T Consensus       206 ~~v~~-~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~-~~g~l~ald~~t------G  276 (394)
T PRK11138        206 GGAIV-GGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALA-YNGNLVALDLRS------G  276 (394)
T ss_pred             CEEEE-EcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEE-cCCeEEEEECCC------C
Confidence            34444 44567788888 67776655432110000 00000    01111 146666654 568888888763      3


Q ss_pred             ceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE
Q psy13998        183 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV  261 (319)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v  261 (319)
                      +.+.....        ..+..+.+. ++++|+.. .++.++.+|. +|+.+.......  ....   .+.++ -+|.+|+
T Consensus       277 ~~~W~~~~--------~~~~~~~~~-~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~~--~~~~---~sp~v-~~g~l~v  340 (394)
T PRK11138        277 QIVWKREY--------GSVNDFAVD-GGRIYLVD-QNDRVYALDTRGGVELWSQSDLL--HRLL---TAPVL-YNGYLVV  340 (394)
T ss_pred             CEEEeecC--------CCccCcEEE-CCEEEEEc-CCCeEEEEECCCCcEEEcccccC--CCcc---cCCEE-ECCEEEE
Confidence            44333211        111122332 45666654 5788999996 566554331110  0111   11222 2456655


Q ss_pred             EeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        262 GDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       262 ~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      . ..++.|+.+| .+|+.+......     .........+ .++++|+. +.+|.|..
T Consensus       341 ~-~~~G~l~~ld~~tG~~~~~~~~~-----~~~~~s~P~~-~~~~l~v~-t~~G~l~~  390 (394)
T PRK11138        341 G-DSEGYLHWINREDGRFVAQQKVD-----SSGFLSEPVV-ADDKLLIQ-ARDGTVYA  390 (394)
T ss_pred             E-eCCCEEEEEECCCCCEEEEEEcC-----CCcceeCCEE-ECCEEEEE-eCCceEEE
Confidence            4 5678999999 578887766321     0111112222 25566665 45666654

>KOG4441|consensus

Probab=97.89  E-value=0.0076  Score=52.35  Aligned_cols=220  Identities=16%  Similarity=0.174  Sum_probs=116.3

Q ss_pred             cCCCcEEEEeCCC------CeEEEeccccccccceeeE--Eec---CceeeEEcCCCcEEEEcCCC------CeEEEEcC
Q psy13998         64 GPDNSIVVADSSN------HRVQVCFPHFDLKTNCVFL--AFT---WPRGIAVGPDNSIVVADSSN------HRVQVFQS  126 (319)
Q Consensus        64 ~~~g~~~~~~~~~------~~v~~~~~~~~~~~~~~~~--~~~---~~~~l~~~~~g~~~~~~~~~------~~i~~~~~  126 (319)
                      +..+.+++.++..      ..+..    +|..++....  .+.   ...++++. ++.+|++++.+      ..+.+||+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~----yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVEC----YDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEE----ecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence            3445677776655      35666    6776553333  111   22445554 56899999887      36888885


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC-----EEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-----RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      ....-......    .....-.+++.. +|.+|+.++.++     .+..||+.+.....-..          ... ...-
T Consensus       357 ~~~~W~~~a~M----~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~----------m~~-~r~~  420 (571)
T KOG4441|consen  357 RTNQWTPVAPM----NTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP----------MLT-RRSG  420 (571)
T ss_pred             CCCceeccCCc----cCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCC----------CCc-ceee
Confidence            54432222111    010111233332 689999998774     46777776532111100          000 0111


Q ss_pred             eeEEEcCCCcEEEEeCCC------CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC-----EEE
Q psy13998        202 HYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN-----RIQ  270 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~-----~i~  270 (319)
                      .+++. -+|++|++++.+      ..+..||+...............    .-.+++.- ++.+|+.++.++     +|.
T Consensus       421 ~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----~~~g~a~~-~~~iYvvGG~~~~~~~~~VE  494 (571)
T KOG4441|consen  421 HGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----SGFGVAVL-NGKIYVVGGFDGTSALSSVE  494 (571)
T ss_pred             eEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----ccceEEEE-CCEEEEECCccCCCccceEE
Confidence            22222 378999988743      46788998765554442221111    11234443 568999988664     478


Q ss_pred             EEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998        271 IFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHR  315 (319)
Q Consensus       271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~  315 (319)
                      .||+.......+..    ........+++.. ++.+|+.++.++.
T Consensus       495 ~ydp~~~~W~~v~~----m~~~rs~~g~~~~-~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  495 RYDPETNQWTMVAP----MTSPRSAVGVVVL-GGKLYAVGGFDGN  534 (571)
T ss_pred             EEcCCCCceeEccc----CccccccccEEEE-CCEEEEEecccCc
Confidence            89976554444321    1111222333333 5688998887764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.87  E-value=0.0095  Score=48.54  Aligned_cols=227  Identities=12%  Similarity=0.162  Sum_probs=100.8

Q ss_pred             EEEEeCCCCeEEEeccccccccc----eeeE-----------EecCceeeEEcCCCcEEEEcC------CCCeEEEEcCC
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTN----CVFL-----------AFTWPRGIAVGPDNSIVVADS------SNHRVQVFQSD  127 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~----~~~~-----------~~~~~~~l~~~~~g~~~~~~~------~~~~i~~~~~~  127 (319)
                      +++-+-.+.+|++    +|..+.    ...+           .+..|+.+-.-|+|+++++.-      ..+.+.++|.+
T Consensus        90 Li~PgL~SsrIyv----iD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   90 LILPGLRSSRIYV----IDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             EEEEBTTT--EEE----EE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             EEeeeeccCcEEE----EECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            4555557889999    776532    1111           334677777778999988842      33578889954


Q ss_pred             -CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC--------------------CCCEEEEEecCCceeeecCceee
Q psy13998        128 -GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS--------------------NNHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       128 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~--------------------~~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                       .+....+....   .....-.++-+.|..++.++..                    ...++.+||...+      +.+.
T Consensus       166 tf~v~g~We~~~---~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r------~~~Q  236 (461)
T PF05694_consen  166 TFEVKGRWEKDR---GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR------KLLQ  236 (461)
T ss_dssp             T--EEEE--SB----TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT------EEEE
T ss_pred             cccccceeccCC---CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC------cEee
Confidence             56666664432   1123346677778777777732                    2468999999865      4444


Q ss_pred             eecccCCcCCCCCCceeEEE--cCCC-cEEEEeCCCCeEEEEeC--CCC----EEEEeCCCCC---Cccc--------cc
Q psy13998        187 KFGSMGNKAGQLEHPHYIAV--SNTN-RVIVSDSNNHRVQIFDV--NGR----VITSFGSEGS---EEGQ--------LK  246 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~--~~~g-~~~v~~~~~~~i~~~~~--~~~----~~~~~~~~~~---~~~~--------~~  246 (319)
                      .+...    .....|.-+.+  +|+. .=|+.+.....|+.|-.  ++.    .+..+.....   ....        ..
T Consensus       237 ~idLg----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~  312 (461)
T PF05694_consen  237 TIDLG----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP  312 (461)
T ss_dssp             EEES-----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred             EEecC----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence            43221    01112334444  3443 33555555667777653  332    2333321110   0001        13


Q ss_pred             CcceEEEcCCCc-EEEEeCCCCEEEEEcCCC----ceEEeecccCC----------CCCCCCCcceEEEccCCc-EEEEe
Q psy13998        247 FPRGVAVDDQGY-ISVGDSGNNRIQIFTPDG----QFLRAFGCWGS----------GDGEFKGLEGVAVMSNGN-ILVCD  310 (319)
Q Consensus       247 ~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g----~~~~~~~~~~~----------~~~~~~~~~~l~~~~~g~-~~v~~  310 (319)
                      -++.|.++-|.+ +|+++...|.|+.||.+.    ++..++-.-+.          ...-...|.-|.++-||+ +|+|.
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            468899998875 899999999999999432    23222211000          011223577889999997 88887


Q ss_pred             CC
Q psy13998        311 RE  312 (319)
Q Consensus       311 ~~  312 (319)
                      +-
T Consensus       393 SL  394 (461)
T PF05694_consen  393 SL  394 (461)
T ss_dssp             --
T ss_pred             ec
Confidence            63

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=0.0062  Score=46.33  Aligned_cols=212  Identities=14%  Similarity=0.201  Sum_probs=108.1

Q ss_pred             CCcceEEcCCCc-EEEEeCCCCe-EEEeccccccccceeeEEecCce------eeEEcCCCcEEEEcCC-----CCeEEE
Q psy13998         57 WPRGIAVGPDNS-IVVADSSNHR-VQVCFPHFDLKTNCVFLAFTWPR------GIAVGPDNSIVVADSS-----NHRVQV  123 (319)
Q Consensus        57 ~~~~v~~~~~g~-~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~g~~~~~~~~-----~~~i~~  123 (319)
                      .-++|+++|.-. -++-+..-|+ ..+    ||..+......+..+.      .-.|+++|.++++...     .+.|-+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~v----fD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv  144 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMV----FDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV  144 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEE----ECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE
Confidence            346788887544 2333333333 344    5665444433222221      1358899987766433     367888


Q ss_pred             EcCCCcE--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEE--------ecCCce-----ee-ecCceeee
Q psy13998        124 FQSDGTF--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF--------DVNGRV-----FQ-SDGTFVGK  187 (319)
Q Consensus       124 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~--------~~~~~~-----~~-~~~~~~~~  187 (319)
                      ||.....  +.++      ..+--.|+.+.+.+||+.++....  -|..-        |++.-.     ++ ..|.++.+
T Consensus       145 Yd~r~~fqrvgE~------~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liek  216 (366)
T COG3490         145 YDAREGFQRVGEF------STHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK  216 (366)
T ss_pred             Eecccccceeccc------ccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhh
Confidence            9854332  3333      344457899999999988876543  22222        222100     01 12222222


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCe------EEEEeCCCCEEEEeCCCCCC-cccccCcceEEEcCC-CcE
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR------VQIFDVNGRVITSFGSEGSE-EGQLKFPRGVAVDDQ-GYI  259 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~------i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-g~~  259 (319)
                      ....  ...+...+..++++++|++++.+-..|.      +.-.-..|+.+.-+...... ...-+++-+|+.+.+ +-+
T Consensus       217 h~Lp--~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV  294 (366)
T COG3490         217 HTLP--ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV  294 (366)
T ss_pred             ccCc--hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence            1110  0122335567889999988877643221      11111223333222111000 012245667888755 455


Q ss_pred             EEEeCCCCEEEEEc-CCCceEEee
Q psy13998        260 SVGDSGNNRIQIFT-PDGQFLRAF  282 (319)
Q Consensus       260 ~v~~~~~~~i~~~~-~~g~~~~~~  282 (319)
                      .++.-..++..+|| .+|.++...
T Consensus       295 ~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         295 ALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             EEecCCCCeEEEEEcCCCcEEecc
Confidence            66666778889999 467666543

>KOG2114|consensus

Probab=97.85  E-value=0.0042  Score=54.20  Aligned_cols=165  Identities=15%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             EEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCC-ceeEEEeCCCeEEEEeCCCC-----EEEEEecCCce
Q psy13998        104 AVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEH-PHYIAVSNTNRVIVSDSNNH-----RVQIFDVNGRV  177 (319)
Q Consensus       104 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~~~~~~-----~i~~~~~~~~~  177 (319)
                      ++++.+..++.++.+|.|.+++..-+.+..+..      .... +..+-.....+++++...+.     .+++|+++...
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa------~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQA------YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehhee------cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            456777778888889999999866555555531      1111 33343444446677654432     58999987431


Q ss_pred             eeecCceeeeecccC-CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCC-CCcccccCcceEEEcC
Q psy13998        178 FQSDGTFVGKFGSMG-NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG-SEEGQLKFPRGVAVDD  255 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~  255 (319)
                      -.....++....... .-+........++++.+-..++++..+|.|..+.-+  ..+..+... ........++++++-.
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD--i~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD--ILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc--chhccccceeeeccCCCCceeeEEec
Confidence            111123331111111 011223445678888888889999999999988522  111111100 0022334678999987


Q ss_pred             CCcE--EEEeCCCCEEEEEcCCCce
Q psy13998        256 QGYI--SVGDSGNNRIQIFTPDGQF  278 (319)
Q Consensus       256 ~g~~--~v~~~~~~~i~~~~~~g~~  278 (319)
                      ++..  ||+..  .+|..|...|+.
T Consensus       182 d~~s~lFv~Tt--~~V~~y~l~gr~  204 (933)
T KOG2114|consen  182 DGKSVLFVATT--EQVMLYSLSGRT  204 (933)
T ss_pred             CCceeEEEEec--ceeEEEEecCCC
Confidence            7754  55554  578888866655

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.0016  Score=52.81  Aligned_cols=72  Identities=25%  Similarity=0.246  Sum_probs=49.6

Q ss_pred             CceeEEEcCC-------CcEEEEeCCCCeEEEEeCCCC---EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-CCE
Q psy13998        200 HPHYIAVSNT-------NRVIVSDSNNHRVQIFDVNGR---VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-NNR  268 (319)
Q Consensus       200 ~~~~~~~~~~-------g~~~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-~~~  268 (319)
                      .|.+|+|-..       +.+|+.......+...++++.   ....+...    .....|.++++.+||.+|++... ++.
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~----d~~gR~~dV~v~~DGallv~~D~~~g~  390 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSG----DLGGRPRDVAVAPDGALLVLTDQGDGR  390 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEec----CCCCcccceEECCCCeEEEeecCCCCe
Confidence            4578888642       678898888777777777776   22222111    11257999999999999999887 667


Q ss_pred             EEEEcCC
Q psy13998        269 IQIFTPD  275 (319)
Q Consensus       269 i~~~~~~  275 (319)
                      |......
T Consensus       391 i~Rv~~~  397 (399)
T COG2133         391 ILRVSYA  397 (399)
T ss_pred             EEEecCC
Confidence            7776643

>KOG0280|consensus

Probab=97.81  E-value=0.0079  Score=45.80  Aligned_cols=174  Identities=8%  Similarity=0.059  Sum_probs=95.3

Q ss_pred             EEEeCCCCeEEEeccccccccceeeEEecC----------ceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCc
Q psy13998         70 VVADSSNHRVQVCFPHFDLKTNCVFLAFTW----------PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGN  139 (319)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  139 (319)
                      ++-....|.|.+    +.........++..          ..++.+++.+.-+++.-.++.+...+.+...+.....-  
T Consensus        88 l~~a~a~G~i~~----~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w--  161 (339)
T KOG0280|consen   88 LLDAHARGQIQL----YRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW--  161 (339)
T ss_pred             eeeccccceEEE----EeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc--
Confidence            333445677777    55433333333322          23455566564444444456666555332222221111  


Q ss_pred             cCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc-CCCcEEEEeC
Q psy13998        140 KAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDS  217 (319)
Q Consensus       140 ~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~  217 (319)
                       ..|.....-..|+. +.+++++++.|+.+..||++-     .++++.+-.     .-|...+.+|.-+ |...++++++
T Consensus       162 -k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~-----p~~~i~~n~-----kvH~~GV~SI~ss~~~~~~I~TGs  230 (339)
T KOG0280|consen  162 -KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI-----PKTFIWHNS-----KVHTSGVVSIYSSPPKPTYIATGS  230 (339)
T ss_pred             -cccceeeeeeecccCCCceEEecCCCceEEEEEecC-----Ccceeeecc-----eeeecceEEEecCCCCCceEEEec
Confidence             34444556666665 458999999999999999872     113332210     2233344555555 4567899999


Q ss_pred             CCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCC--CcEEEEeCCCC
Q psy13998        218 NNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQ--GYISVGDSGNN  267 (319)
Q Consensus       218 ~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~--g~~~v~~~~~~  267 (319)
                      .+..|++||..  ++.+...       .-...+..+...|.  +.+++++..+|
T Consensus       231 YDe~i~~~DtRnm~kPl~~~-------~v~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  231 YDECIRVLDTRNMGKPLFKA-------KVGGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             cccceeeeehhcccCccccC-------ccccceEEEEecchhhhHHHHHHHhcC
Confidence            99999999965  3433322       11234677787775  34566555443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.78  E-value=0.014  Score=47.68  Aligned_cols=95  Identities=13%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             eEEEc-CCC-cEEEEeCCC--CeEEEEeCCCCEEEEeCCCCCCcccccCc-ceEEEcCCC-cEEEEeCC----CCEEEEE
Q psy13998        203 YIAVS-NTN-RVIVSDSNN--HRVQIFDVNGRVITSFGSEGSEEGQLKFP-RGVAVDDQG-YISVGDSG----NNRIQIF  272 (319)
Q Consensus       203 ~~~~~-~~g-~~~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~g-~~~v~~~~----~~~i~~~  272 (319)
                      ...+. +++ .++.....+  .+|+.++.++...+.+.     .+. ..+ .-+.+++++ .+|+++..    ...|+..
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT-----~G~-~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT-----SGD-WEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS------SS-S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc-----cCc-eeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            34443 444 343333344  46888888887766652     122 123 236677775 57777765    4478888


Q ss_pred             cCC-CceEEeecccCCCCCCCCCc-ceEEEccCCcEEEEe
Q psy13998        273 TPD-GQFLRAFGCWGSGDGEFKGL-EGVAVMSNGNILVCD  310 (319)
Q Consensus       273 ~~~-g~~~~~~~~~~~~~~~~~~~-~~l~~~~~g~~~v~~  310 (319)
                      +.+ +..++.+..       .... ..+.++|+|++++-.
T Consensus       313 ~~~~~~~~~~LT~-------~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  313 SLDSGGEPKCLTC-------EDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             ETTETTEEEESST-------TSSTTEEEEE-TTSSEEEEE
T ss_pred             EeCCCCCeEeccC-------CCCCceEEEECCCCCEEEEE
Confidence            877 777776632       1222 589999999976644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.78  E-value=0.0011  Score=50.70  Aligned_cols=218  Identities=11%  Similarity=0.132  Sum_probs=117.0

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeE----------Eec---------CceeeEEcCC-C-cE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFL----------AFT---------WPRGIAVGPD-N-SI  111 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~----------~~~---------~~~~l~~~~~-g-~~  111 (319)
                      .+.+.+|.|+..|.+++++...|+|..    |......  ...          ++.         .+..+.+-.+ + ..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvl----fer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVL----FEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEE----eecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            356789999999999999888899988    5543211  110          111         2345555443 3 35


Q ss_pred             EEEcCCCCeEEEEcCCCcEEEEec-----------CCC---------------------------ccCCCCCCceeEEEe
Q psy13998        112 VVADSSNHRVQVFQSDGTFVGKFG-----------SMG---------------------------NKAGQLEHPHYIAVS  153 (319)
Q Consensus       112 ~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~---------------------------~~~~~~~~~~~l~~~  153 (319)
                      ++..+.+.+|++|..-.+-++.+.           ..|                           ....|...++++.+.
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            666677889999972221111000           000                           011233344566777


Q ss_pred             CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEE
Q psy13998        154 NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVI  232 (319)
Q Consensus       154 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~  232 (319)
                      .+...|+++ .+-+|.+|+++-.    ++.+--.--...........+++..|+|.. +++.-.+..|.|.+-|.....+
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~----D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEII----DGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             Cchheeeec-cceeeeecccccc----CCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence            766666654 5677888887621    222111000000111112234556677653 4555556678898888542111


Q ss_pred             -----EEe--CCCCC----CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC--CCceEEee
Q psy13998        233 -----TSF--GSEGS----EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP--DGQFLRAF  282 (319)
Q Consensus       233 -----~~~--~~~~~----~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~g~~~~~~  282 (319)
                           ..+  ...+.    ..+....+..+.|+++|+++++ ..-.+|.+||.  +.+.++++
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~pikTi  318 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCCceee
Confidence                 111  11111    1123345778999999887665 44578999994  44556655

>KOG0882|consensus

Probab=97.76  E-value=0.00094  Score=53.63  Aligned_cols=205  Identities=13%  Similarity=0.134  Sum_probs=125.8

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEecccccccc-cee--eE----EecCceeeEEcCCCcEEEEcCC-CCeEEEEc-C
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT-NCV--FL----AFTWPRGIAVGPDNSIVVADSS-NHRVQVFQ-S  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~-~~~--~~----~~~~~~~l~~~~~g~~~~~~~~-~~~i~~~~-~  126 (319)
                      +.+..+... ..+++++++-|+.++.    |.... .+.  +.    ++..+.+++.+-++.++.+... ++.+++|| .
T Consensus        10 d~i~hv~~t-ka~fiiqASlDGh~KF----WkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen   10 DVITHVFPT-KAKFIIQASLDGHKKF----WKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ceeeeEeee-hhheEEeeecchhhhh----cCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            444444443 4578999999999999    66533 111  11    3345577888888888888666 88999988 3


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEe-CCC----eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVS-NTN----RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~g----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      +-..+.-+...       .-|-.+.+. ..|    .+-++...++.+.++|..+..     .....+     ..-+....
T Consensus        85 n~DminmiKL~-------~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-----~q~~~f-----kklH~sPV  147 (558)
T KOG0882|consen   85 NFDMINMIKLV-------DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-----CQDGYF-----KKLHFSPV  147 (558)
T ss_pred             ccchhhhcccc-------cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc-----Ccccee-----cccccCce
Confidence            33322111110       122223332 123    344455567888888866521     111111     12345566


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeCCCCEE-------EEeCCCCC---CcccccCcceEEEcCCCcEEEEeCCCCEEEE
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI-------TSFGSEGS---EEGQLKFPRGVAVDDQGYISVGDSGNNRIQI  271 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~  271 (319)
                      ..+.+.+.+...++....|.|.-|...+...       ..+.....   .......|.++.++|+|..+.+-..+.+|++
T Consensus       148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            7788888888888888889999999775111       11100000   0123356889999999998888889999999


Q ss_pred             Ec-CCCceEEee
Q psy13998        272 FT-PDGQFLRAF  282 (319)
Q Consensus       272 ~~-~~g~~~~~~  282 (319)
                      +. ..|++++.+
T Consensus       228 F~~KtGklvqei  239 (558)
T KOG0882|consen  228 FVFKTGKLVQEI  239 (558)
T ss_pred             EEeccchhhhhh
Confidence            98 567666554

>PHA02713 hypothetical protein; Provisional

Probab=97.75  E-value=0.0064  Score=52.84  Aligned_cols=184  Identities=12%  Similarity=0.106  Sum_probs=93.3

Q ss_pred             CCCcEEEEeCCC------CeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcCCC
Q psy13998         65 PDNSIVVADSSN------HRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQSDG  128 (319)
Q Consensus        65 ~~g~~~~~~~~~------~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~  128 (319)
                      -++++|+.|+.+      ..+..    |++.++....  .+..+   .+++. -+|++|+.++.+     ..+..||+..
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~----Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYK----INIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEE----EECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCC
Confidence            367888888743      34667    6665543322  11111   12222 367899988764     3588899654


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----------------------CEEEEEecCCceeeecCcee
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----------------------HRVQIFDVNGRVFQSDGTFV  185 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----------------------~~i~~~~~~~~~~~~~~~~~  185 (319)
                      ..-......   ...... .+++ .-+|++|+.++.+                       ..+..||+....      ..
T Consensus       377 ~~W~~~~~m---p~~r~~-~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~------W~  445 (557)
T PHA02713        377 DKWKMLPDM---PIALSS-YGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI------WE  445 (557)
T ss_pred             CeEEECCCC---Cccccc-ccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe------Ee
Confidence            433322211   111111 1222 2368999988754                       246667766431      11


Q ss_pred             eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC------CeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~------~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                      . ..   ........ .+++. -+|++|+.++.+      ..+.+||+.. .........   +.... -.+++.- +|+
T Consensus       446 ~-v~---~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~-~~~~~~~-~~~  514 (557)
T PHA02713        446 T-LP---NFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT---ESRLS-ALHTILH-DNT  514 (557)
T ss_pred             e-cC---CCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc---Ccccc-cceeEEE-CCE
Confidence            1 00   00111111 22332 357899987643      3467899875 333333211   11111 1233332 579


Q ss_pred             EEEEeCCCC--EEEEEcCC
Q psy13998        259 ISVGDSGNN--RIQIFTPD  275 (319)
Q Consensus       259 ~~v~~~~~~--~i~~~~~~  275 (319)
                      +|+.++.++  .+..||+.
T Consensus       515 iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        515 IMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             EEEEeeecceeehhhcCcc
Confidence            999998777  66777754

>KOG2695|consensus

Probab=97.71  E-value=0.00052  Score=53.14  Aligned_cols=147  Identities=10%  Similarity=0.222  Sum_probs=92.7

Q ss_pred             CCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        116 SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       116 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      +.+..|.+.+..+.....+.       ....+.++.|...+++++.+..++.|..+|++.+ ...++.....+       
T Consensus       231 G~sqqv~L~nvetg~~qsf~-------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r-nqG~~~~a~rl-------  295 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQQSFQ-------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR-NQGNGWCAQRL-------  295 (425)
T ss_pred             cccceeEEEEeecccccccc-------cchhHHHHHhcccCCeeEecccCCcEEEEEeeec-ccCCCcceEEE-------
Confidence            34445666664444333342       2245566777777899999999999999999753 11111222221       


Q ss_pred             CCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCC----CCEEEEeCCCCCCcccccC--cceEEEcCCCcEEEEeCCCCE
Q psy13998        196 GQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN----GRVITSFGSEGSEEGQLKF--PRGVAVDDQGYISVGDSGNNR  268 (319)
Q Consensus       196 ~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~i~~~~~g~~~v~~~~~~~  268 (319)
                      -|....+++.+-. ++..+++...++.|.+||..    +..+.+.      .+|.+.  +.-+-+++...++++.+.|.-
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY------eGHvN~~a~l~~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY------EGHVNLSAYLPAHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee------ecccccccccccccccccceEEEccCeeE
Confidence            1233445554443 56777788889999999953    2335555      444332  333456677678888899999


Q ss_pred             EEEEc-CCCceEEeec
Q psy13998        269 IQIFT-PDGQFLRAFG  283 (319)
Q Consensus       269 i~~~~-~~g~~~~~~~  283 (319)
                      .++|. ..|.++.++.
T Consensus       370 tRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTIP  385 (425)
T ss_pred             EEEEecccCceeeccC
Confidence            99999 5688888773

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.70  E-value=0.003  Score=48.40  Aligned_cols=219  Identities=10%  Similarity=0.162  Sum_probs=117.5

Q ss_pred             cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc---EEEEecCCCccCCC---------CCCceeEEEeCCC--eEEEEeC
Q psy13998         98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT---FVGKFGSMGNKAGQ---------LEHPHYIAVSNTN--RVIVSDS  163 (319)
Q Consensus        98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~l~~~~~g--~~~~~~~  163 (319)
                      ..+.++.++..|.++.++...|+|..|..+..   ..+.+.........         ...+..+.+..++  ..|+..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            35678889888888888877899999973321   11111111110111         1234566665433  4566677


Q ss_pred             CCCEEEEEecCCceeee--------------cCc-----------------eeeeecccCCcCCCCCCceeEEEcCCCcE
Q psy13998        164 NNHRVQIFDVNGRVFQS--------------DGT-----------------FVGKFGSMGNKAGQLEHPHYIAVSNTNRV  212 (319)
Q Consensus       164 ~~~~i~~~~~~~~~~~~--------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  212 (319)
                      .+.+|++|.+..+.+..              .|.                 .+...+.......|..+++++.+..+...
T Consensus       107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et  186 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET  186 (460)
T ss_pred             CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence            89999999875431100              000                 00000000012344555677888877766


Q ss_pred             EEEeCCCCeEEEEeCC---CCE-EEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCC-----CceEEee
Q psy13998        213 IVSDSNNHRVQIFDVN---GRV-ITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPD-----GQFLRAF  282 (319)
Q Consensus       213 ~v~~~~~~~i~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~-----g~~~~~~  282 (319)
                      |++.. +-+|-+|+++   +.. +..+.+... .....-+++..|+|.. +++.-.+..|.|.+-|..     ....+.+
T Consensus       187 ~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nm-eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         187 LLSAD-DLRINLWNLEIIDGSFNIVDIKPHNM-EELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeecc-ceeeeeccccccCCceEEEeccCccH-HHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            66543 5678889853   332 222211111 1112235677788863 566666778899988843     1111111


Q ss_pred             c--ccCCC----CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        283 G--CWGSG----DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~--~~~~~----~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .  ..+..    .+-...+.++.|+++|+++++-.. .+|++|
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiw  306 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIW  306 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEE
Confidence            1  00000    122356788999999987766543 467776

>KOG2114|consensus

Probab=97.68  E-value=0.019  Score=50.38  Aligned_cols=197  Identities=13%  Similarity=0.203  Sum_probs=103.5

Q ss_pred             EEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCCCC-----eEEEEcCC---C-c---
Q psy13998         62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNH-----RVQVFQSD---G-T---  129 (319)
Q Consensus        62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-----~i~~~~~~---~-~---  129 (319)
                      ++++++..++.++.+|.|.+++.++.....-.......+..+-...+.+++++...+.     .+++|+.+   + .   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            5677788899999999998844433221110000111122233333334555544332     58899832   1 1   


Q ss_pred             EEE--EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        130 FVG--KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       130 ~~~--~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      .+.  .+..... +........++++.+-+.++++..+|.|..+.-+  .....|.... +     .......++++++.
T Consensus       110 c~~~~ri~~~~n-p~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD--i~RDrgsr~~-~-----~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  110 CLYEHRIFTIKN-PTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD--ILRDRGSRQD-Y-----SHRGKEPITGLALR  180 (933)
T ss_pred             eeeeeeeeccCC-CCCCCcceEEEEEccccEEEEEecCcEEEEEcCc--chhcccccee-e-----eccCCCCceeeEEe
Confidence            121  1111111 1112344678888888889999999999887543  2221121111 1     12223467889988


Q ss_pred             CCCcE--EEEeCCCCeEEEEeCCCCE--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCc
Q psy13998        208 NTNRV--IVSDSNNHRVQIFDVNGRV--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       208 ~~g~~--~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~  277 (319)
                      .++..  |++..  .+|..|...|+.  ....      ..+.....+..+++.-. +++++  +..|++|+.+++
T Consensus       181 ~d~~s~lFv~Tt--~~V~~y~l~gr~p~~~~l------d~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~  245 (933)
T KOG2114|consen  181 SDGKSVLFVATT--EQVMLYSLSGRTPSLKVL------DNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGR  245 (933)
T ss_pred             cCCceeEEEEec--ceeEEEEecCCCcceeee------ccCCccceeeecCCCCccEEEec--CceEEEEcCCCc
Confidence            77644  55544  368888876655  2323      22233345555654433 44443  357888886654

>KOG1645|consensus

Probab=97.64  E-value=0.0072  Score=48.06  Aligned_cols=70  Identities=24%  Similarity=0.399  Sum_probs=56.6

Q ss_pred             CCcCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCC-cEEEEcCCCCeEEEEc
Q psy13998         52 PGCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDN-SIVVADSSNHRVQVFQ  125 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g-~~~~~~~~~~~i~~~~  125 (319)
                      +++-..+.+|+|+|..+ ++..++-+..|.+    +++.+......+   ..+.+++|+.+. +.++++-.+|.|.+||
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki----~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKI----MDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEE----EecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence            44456789999999777 7888889999999    999877665533   467889999775 5777888899999999

>KOG4532|consensus

Probab=97.64  E-value=0.015  Score=43.85  Aligned_cols=225  Identities=11%  Similarity=0.055  Sum_probs=118.9

Q ss_pred             hccccceeeeecccCCC--CCcCC----CCcceEEcCC---Cc-EEEEeCCCCeEEEeccccccccceeeEEecC--cee
Q psy13998         35 YLQKRRLQFKIGSRGSE--PGCFT----WPRGIAVGPD---NS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTW--PRG  102 (319)
Q Consensus        35 ~l~~~~~~~~~~~~~~~--~~~~~----~~~~v~~~~~---g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~  102 (319)
                      +|+.+.....|+.|...  .+|+.    ...+|.+...   .+ -+..++.|+++++..  .+....+...+.+.  ...
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~--~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV--VSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEE--EecCcccceeeccccceee
Confidence            45666566666666544  34431    1223333211   11 233345666666611  23333444555554  678


Q ss_pred             eEEcCCCcEEEEcCCCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee
Q psy13998        103 IAVGPDNSIVVADSSNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS  180 (319)
Q Consensus       103 l~~~~~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~  180 (319)
                      +++++++++.++.+....|..|.  .+++.+..+...    .....-.+..|+.....|+++..|+.+.+||.+..    
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a----~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~----  235 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA----PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM----  235 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec----ccCCCceeeeeccCcceEEEEecCCcEEEEEeccc----
Confidence            99999999888888888888887  344443332111    11223356778888889999999999999998742    


Q ss_pred             cCceeeeecccCCcCCCCCCceeEEEcCCC---cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC--CcccccCcceEEEc
Q psy13998        181 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN---RVIVSDSNNHRVQIFDV-NGRVITSFGSEGS--EEGQLKFPRGVAVD  254 (319)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~i~~~  254 (319)
                       +.+......  ..+.+........|++.|   -++++.. -+.+.+.|+ ++.....+.....  .....+.+.+-.+.
T Consensus       236 -~tpm~~~ss--trp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~  311 (344)
T KOG4532|consen  236 -ATPMAEISS--TRPHHNGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN  311 (344)
T ss_pred             -ccchhhhcc--cCCCCCCceEEEEecCCCcceEEEEecC-cceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence             122111111  112233445566777655   3445444 568888885 4443333321111  01112235566666


Q ss_pred             CCC-cEEEEeCCCCEEEEEcCC
Q psy13998        255 DQG-YISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       255 ~~g-~~~v~~~~~~~i~~~~~~  275 (319)
                      .++ ..+++..  -.+..|+..
T Consensus       312 ~~n~s~~v~~e--~~~ae~ni~  331 (344)
T KOG4532|consen  312 NENESNDVKNE--LQGAEYNIL  331 (344)
T ss_pred             CCCcccccccc--hhhheeecc
Confidence            554 3444432  234455543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.63  E-value=0.033  Score=47.78  Aligned_cols=168  Identities=13%  Similarity=0.178  Sum_probs=82.7

Q ss_pred             eEEEEc-CCCcEEEEecCCCccC---CCCCCceeEEEe-CCCe---EEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998        120 RVQVFQ-SDGTFVGKFGSMGNKA---GQLEHPHYIAVS-NTNR---VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       120 ~i~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~~~-~~g~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                      .++.+| .+|+....+.......   .....|.-.... -++.   +++.++.++.+..+|..+      |+.+......
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t------G~~~W~~~~~  330 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT------GKLISARPEV  330 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC------CcEeeEeEee
Confidence            799999 7888888764321100   000111111111 1332   456667788899888863      3444433211


Q ss_pred             CCcCCCCCCceeEEEcCCCcEEEEe-----------------CCCCeEEEEeC-CCCEEEEeCCCCCCcc----cccCcc
Q psy13998        192 GNKAGQLEHPHYIAVSNTNRVIVSD-----------------SNNHRVQIFDV-NGRVITSFGSEGSEEG----QLKFPR  249 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~g~~~v~~-----------------~~~~~i~~~~~-~~~~~~~~~~~~~~~~----~~~~~~  249 (319)
                               ...++.++ +.+|+..                 ..++.+.-+|. +|+.+.+.........    ......
T Consensus       331 ---------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~  400 (488)
T cd00216         331 ---------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG  400 (488)
T ss_pred             ---------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc
Confidence                     01123333 3444421                 23567888884 6776665532100000    000011


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      .++.  .+.+++.++.++.|+.+| .+|+.+.......   .....|  +.+..+|++|+..
T Consensus       401 ~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~---~~~a~P--~~~~~~g~~yv~~  455 (488)
T cd00216         401 SLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPS---GIQATP--MTYEVNGKQYVGV  455 (488)
T ss_pred             ceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCC---CceEcC--EEEEeCCEEEEEE
Confidence            2333  234555556899999999 5888887763211   111122  3445577866654

The alignment model contains an 8-bladed beta-propeller.

>KOG4649|consensus

Probab=97.60  E-value=0.016  Score=43.50  Aligned_cols=137  Identities=13%  Similarity=0.052  Sum_probs=80.5

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCC
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ  143 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~  143 (319)
                      .+++.++..+.+..    .|.+++....+.-   .+.+-++- -|+.++.+..++.++..+ .+|...+.+...+...  
T Consensus        24 T~v~igSHs~~~~a----vd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIA----VDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK--   96 (354)
T ss_pred             eEEEEecCCceEEE----ecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc--
Confidence            46777788888877    6666555443211   11111111 366788888899999999 7777776664322111  


Q ss_pred             CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeE
Q psy13998        144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRV  222 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i  222 (319)
                          ....+++++.++..++.|+..+..|...+      ..+......+..   +   .+-++++ ++.+|++.. .|.+
T Consensus        97 ----~~a~~d~~~glIycgshd~~~yalD~~~~------~cVykskcgG~~---f---~sP~i~~g~~sly~a~t-~G~v  159 (354)
T KOG4649|consen   97 ----VRAQCDFDGGLIYCGSHDGNFYALDPKTY------GCVYKSKCGGGT---F---VSPVIAPGDGSLYAAIT-AGAV  159 (354)
T ss_pred             ----cceEEcCCCceEEEecCCCcEEEeccccc------ceEEecccCCce---e---ccceecCCCceEEEEec-cceE
Confidence                23456778888899999999999998754      222222111111   1   1224555 567777655 4566


Q ss_pred             EEEeCC
Q psy13998        223 QIFDVN  228 (319)
Q Consensus       223 ~~~~~~  228 (319)
                      ...+.+
T Consensus       160 lavt~~  165 (354)
T KOG4649|consen  160 LAVTKN  165 (354)
T ss_pred             EEEccC
Confidence            655543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.58  E-value=0.031  Score=46.05  Aligned_cols=115  Identities=18%  Similarity=0.160  Sum_probs=72.2

Q ss_pred             CCCceeEEEeCCCeEEE--EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC---C
Q psy13998        144 LEHPHYIAVSNTNRVIV--SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---N  218 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---~  218 (319)
                      ...++..+|.|.++-|.  ++...-.+.++++++.       +...+..        ..-+.+.|+|.+++.+...   .
T Consensus       274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------l~~~~Pe--------~~rNT~~fsp~~r~il~agF~nl  338 (561)
T COG5354         274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------LRFYFPE--------QKRNTIFFSPHERYILFAGFDNL  338 (561)
T ss_pred             cccceeeeecccCCceeEEecccccceeecccccc-------eEEecCC--------cccccccccCcccEEEEecCCcc
Confidence            35678999988665444  3456677888888863       2222211        1113467888887665533   2


Q ss_pred             CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC------CCCEEEEEcCCCceE
Q psy13998        219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS------GNNRIQIFTPDGQFL  279 (319)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~------~~~~i~~~~~~g~~~  279 (319)
                      .+.+.+|++.++....-..    .  .....-..|+|+|.+|.++.      .|+.|.+|+..|..+
T Consensus       339 ~gni~i~~~~~rf~~~~~~----~--~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         339 QGNIEIFDPAGRFKVAGAF----N--GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             ccceEEeccCCceEEEEEe----e--cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            4789999988876543110    1  11234457999999888875      367788888766543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.56  E-value=0.024  Score=44.20  Aligned_cols=186  Identities=15%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCC---CccCCCCCCceeEEEeCCCeEEEEeC-CCCEEEEEecC
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM---GNKAGQLEHPHYIAVSNTNRVIVSDS-NNHRVQIFDVN  174 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~i~~~~~~  174 (319)
                      .++.|++ .++.+|+..+.-..+..++........+..+   ......-...+++++....-.|+++. ......-|.-.
T Consensus       104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~  182 (335)
T TIGR03032       104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREG  182 (335)
T ss_pred             chhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccccc
Confidence            3467888 5667777777767777777655444443211   00011112447888876555666643 22222222211


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEE
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                      .    .+|-++............+..|.+-.+. +|++|++++..+.+..+|++ |+......       -...|.+++|
T Consensus       183 ~----~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~-------vpG~~rGL~f  250 (335)
T TIGR03032       183 R----RDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAF-------LPGFTRGLAF  250 (335)
T ss_pred             c----cCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEE-------CCCCCcccce
Confidence            0    0111221111111112223444444453 68999999999999999986 75543331       1235788888


Q ss_pred             cCCCcEEEEeCC--------------------CCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        254 DDQGYISVGDSG--------------------NNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       254 ~~~g~~~v~~~~--------------------~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      .  |.+++++..                    ..-|.+.| .+|..+..+.-    ++....+.++++-|+
T Consensus       251 ~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~f----eg~v~EifdV~vLPg  315 (335)
T TIGR03032       251 A--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRF----EGVIEEIYDVAVLPG  315 (335)
T ss_pred             e--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEe----CCceeEEEEEEEecC
Confidence            7  666655432                    13467777 46666655432    233445666666665

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG3617|consensus

Probab=97.53  E-value=0.0071  Score=52.98  Aligned_cols=107  Identities=12%  Similarity=0.080  Sum_probs=75.8

Q ss_pred             CcceEEcCCCcEEEEeC----CCCeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         58 PRGIAVGPDNSIVVADS----SNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      +.-..|.|...+|+.++    ..|+|.+    |-- +++...+..   +..+++|+|..-+++.+..-+.+.+|..+.+.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtI----fad-tGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTI----FAD-TGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEE----Eec-CCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            34456777777766553    4577877    432 233333333   44679999987777777778889999966665


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  174 (319)
                      ...+.     ..|...+..+.|+++|..+++...-+.+..|..+
T Consensus        93 ~htv~-----~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 THTVV-----ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeec-----cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            55553     4455677899999999999999888999888765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.53  E-value=0.026  Score=47.25  Aligned_cols=174  Identities=10%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEe
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKF  134 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~  134 (319)
                      ..|..|.++|+|+.++.+ +++.-.+    +....... .........+|.+.+++.+. .....|.++. .+.+....+
T Consensus        33 ~~p~~ls~npngr~v~V~-g~geY~i----yt~~~~r~-k~~G~g~~~vw~~~n~yAv~-~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVC-GDGEYEI----YTALAWRN-KAFGSGLSFVWSSRNRYAVL-ESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             S--SEEEE-TTSSEEEEE-ETTEEEE----EETTTTEE-EEEEE-SEEEE-TSSEEEEE--TTS-EEEEETTEE-TT---
T ss_pred             cCCeeEEECCCCCEEEEE-cCCEEEE----EEccCCcc-cccCceeEEEEecCccEEEE-ECCCeEEEEEcCccccceEE
Confidence            459999999999977664 4556666    54322222 23345566778775554444 4467788864 332222222


Q ss_pred             cCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE
Q psy13998        135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV  214 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  214 (319)
                      ..+       ..+..|  .. |.++...+ ++.|.+||....      +.++++..        ..+..+.|+++|.+++
T Consensus       106 ~~~-------~~~~~I--f~-G~LL~~~~-~~~i~~yDw~~~------~~i~~i~v--------~~vk~V~Ws~~g~~va  160 (443)
T PF04053_consen  106 KLP-------FSVEKI--FG-GNLLGVKS-SDFICFYDWETG------KLIRRIDV--------SAVKYVIWSDDGELVA  160 (443)
T ss_dssp             --S-------S-EEEE--E--SSSEEEEE-TTEEEEE-TTT--------EEEEESS---------E-EEEEE-TTSSEEE
T ss_pred             cCC-------cccceE--Ec-CcEEEEEC-CCCEEEEEhhHc------ceeeEEec--------CCCcEEEEECCCCEEE
Confidence            111       112223  22 76666554 348999998854      56665532        1246799999998776


Q ss_pred             EeCCCCeEEEEeCCCC------------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE
Q psy13998        215 SDSNNHRVQIFDVNGR------------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI  271 (319)
Q Consensus       215 ~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~  271 (319)
                      ..+. ..+++++.+..            ....+      ......+.+.+|..+ -++.+.. + +|..
T Consensus       161 l~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~------~E~~~~IkSg~W~~d-~fiYtT~-~-~lkY  219 (443)
T PF04053_consen  161 LVTK-DSIYILKYNLEAVAAIPEEGVEDAFELI------HEISERIKSGCWVED-CFIYTTS-N-HLKY  219 (443)
T ss_dssp             EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE------EEE-S--SEEEEETT-EEEEE-T-T-EEEE
T ss_pred             EEeC-CeEEEEEecchhcccccccCchhceEEE------EEecceeEEEEEEcC-EEEEEcC-C-eEEE
Confidence            6654 46666654332            22222      111335677788766 4444433 3 6665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.52  E-value=0.011  Score=52.52  Aligned_cols=148  Identities=15%  Similarity=0.212  Sum_probs=83.2

Q ss_pred             CCceeEEEeC-CCeEEEEeC-CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-------CcEEEE
Q psy13998        145 EHPHYIAVSN-TNRVIVSDS-NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-------NRVIVS  215 (319)
Q Consensus       145 ~~~~~l~~~~-~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~v~  215 (319)
                      -.|..+-++. +.++++... ..+.++..|++      .|+++..+......+     ..  .+.|+       ..--+.
T Consensus       481 ~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe------~GKVV~eW~~~~~~~-----v~--~~~p~~K~aqlt~e~tfl  547 (794)
T PF08553_consen  481 FTPKKAMLHDQDRNMILLDPNNPNKLYKMDLE------RGKVVEEWKVHDDIP-----VV--DIAPDSKFAQLTNEQTFL  547 (794)
T ss_pred             cCcchhhhhccccceEeecCCCCCceEEEecC------CCcEEEEeecCCCcc-----ee--EecccccccccCCCceEE
Confidence            3455555554 345555543 45788888887      346666654322110     11  22221       122344


Q ss_pred             eCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCC
Q psy13998        216 DSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFK  293 (319)
Q Consensus       216 ~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~  293 (319)
                      +..++.+..||+.  +..+..-....  -.....-.+++-+.+|++ +.++.+|.|++||..|+.-++.-     ++-..
T Consensus       548 Gls~n~lfriDpR~~~~k~v~~~~k~--Y~~~~~Fs~~aTt~~G~i-avgs~~G~IRLyd~~g~~AKT~l-----p~lG~  619 (794)
T PF08553_consen  548 GLSDNSLFRIDPRLSGNKLVDSQSKQ--YSSKNNFSCFATTEDGYI-AVGSNKGDIRLYDRLGKRAKTAL-----PGLGD  619 (794)
T ss_pred             EECCCceEEeccCCCCCceeeccccc--cccCCCceEEEecCCceE-EEEeCCCcEEeecccchhhhhcC-----CCCCC
Confidence            4557789999964  32222110000  111223457788877755 66688999999997664322220     33446


Q ss_pred             CcceEEEccCCcEEEEeCCC
Q psy13998        294 GLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       294 ~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ++.+|.++.||+++++....
T Consensus       620 pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  620 PIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             CeeEEEecCCCcEEEEeecc
Confidence            78999999999976666554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066|consensus

Probab=97.49  E-value=0.019  Score=49.89  Aligned_cols=181  Identities=10%  Similarity=0.058  Sum_probs=108.7

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      ...+++++  ++.++-++.+|.|++++..|.....+.       +.  +.    +.+|.++.+++.||+|.+..+.+.  
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~~-------~s--~~----~~~Gey~asCS~DGkv~I~sl~~~--  103 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNFD-------HS--SS----ILEGEYVASCSDDGKVVIGSLFTD--  103 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCccccccc-------cc--cc----ccCCceEEEecCCCcEEEeeccCC--
Confidence            34555554  567888889999999997777632221       11  11    567999999999999988765432  


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCC-----CcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceE
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-----NRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGV  251 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i  251 (319)
                          +....+       .-...+..++++|+     .+.+++++..| +..+..+  |.......     ......+.++
T Consensus       104 ----~~~~~~-------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l-----~~~eG~I~~i  166 (846)
T KOG2066|consen  104 ----DEITQY-------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL-----SEGEGPIHSI  166 (846)
T ss_pred             ----ccceeE-------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceee-----ecCccceEEE
Confidence                111111       11234677999987     36788888777 7777643  22221111     2233457778


Q ss_pred             EEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        252 AVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       252 ~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      .|.  |++ ++-..|-.|++|| ..++.+..+..+.........|..+.|.++.++++ |..+ +|+|
T Consensus       167 ~W~--g~l-IAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d-~v~i  229 (846)
T KOG2066|consen  167 KWR--GNL-IAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGD-SVKI  229 (846)
T ss_pred             Eec--CcE-EEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCC-eEEE
Confidence            875  343 3444456699999 45666666644333333445677788988766555 4333 3443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.47  E-value=0.02  Score=48.09  Aligned_cols=70  Identities=20%  Similarity=0.216  Sum_probs=56.5

Q ss_pred             CCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        145 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       145 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                      ..+.+.+++|+...++.++.|+.|.+||......        ..      ......|..++++|+|.++++++..|.+..
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--------~~------~ka~~~P~~iaWHp~gai~~V~s~qGelQ~  325 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--------LL------AKAEFIPTLIAWHPDGAIFVVGSEQGELQC  325 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCCCee--------ee------eeecccceEEEEcCCCcEEEEEcCCceEEE
Confidence            4678889999999999999999999999874321        11      111245888999999999999999999999


Q ss_pred             EeCC
Q psy13998        225 FDVN  228 (319)
Q Consensus       225 ~~~~  228 (319)
                      ||..
T Consensus       326 FD~A  329 (545)
T PF11768_consen  326 FDMA  329 (545)
T ss_pred             EEee
Confidence            9964

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.46  E-value=0.058  Score=46.33  Aligned_cols=195  Identities=13%  Similarity=0.227  Sum_probs=99.3

Q ss_pred             CcEEEEeCCCCeEEEeccccccccceeeEEecCc----------eeeEEcCCCcEEEEcC--------CCCeEEEEc-CC
Q psy13998         67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP----------RGIAVGPDNSIVVADS--------SNHRVQVFQ-SD  127 (319)
Q Consensus        67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~g~~~~~~~--------~~~~i~~~~-~~  127 (319)
                      +++++ ++.++.|+.    +|..+++..-.+...          .+..+. ++.+|+...        .++.++.+| .+
T Consensus       111 ~~V~v-~~~~g~v~A----lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~T  184 (488)
T cd00216         111 RKVFF-GTFDGRLVA----LDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVET  184 (488)
T ss_pred             CeEEE-ecCCCeEEE----EECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCC
Confidence            45554 456788888    888777665543321          112222 244554432        357899999 68


Q ss_pred             CcEEEEecCCCccCCCC---------------CCceeEEEeCC-CeEEEEeCCC-----------------CEEEEEecC
Q psy13998        128 GTFVGKFGSMGNKAGQL---------------EHPHYIAVSNT-NRVIVSDSNN-----------------HRVQIFDVN  174 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~-g~~~~~~~~~-----------------~~i~~~~~~  174 (319)
                      |+.+..+..........               ..-...++++. +.+|+.....                 +.+..+|..
T Consensus       185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~  264 (488)
T cd00216         185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD  264 (488)
T ss_pred             CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence            98888765421100000               00013456653 4555543221                 267777776


Q ss_pred             CceeeecCceeeeecccCCcC---CCCCCceeEEEc-CCCc---EEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKA---GQLEHPHYIAVS-NTNR---VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~g~---~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~  246 (319)
                            +|+.+..+.......   .....|.-.... -++.   +++++..++.++.+|. +|+.+......        
T Consensus       265 ------tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--------  330 (488)
T cd00216         265 ------TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--------  330 (488)
T ss_pred             ------CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--------
Confidence                  345554442211000   000111111111 2332   5666777899999995 78877665211        


Q ss_pred             CcceEEEcCCCcEEEEe-----------------CCCCEEEEEc-CCCceEEeec
Q psy13998        247 FPRGVAVDDQGYISVGD-----------------SGNNRIQIFT-PDGQFLRAFG  283 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~-----------------~~~~~i~~~~-~~g~~~~~~~  283 (319)
                       ...++.+| +.+|+..                 ..++.|..+| .+|+.+....
T Consensus       331 -~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~  383 (488)
T cd00216         331 -EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR  383 (488)
T ss_pred             -ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence             11233344 4455532                 2357888888 5787776653

The alignment model contains an 8-bladed beta-propeller.

>KOG2695|consensus

Probab=97.43  E-value=0.0017  Score=50.36  Aligned_cols=106  Identities=5%  Similarity=0.112  Sum_probs=71.9

Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeCCC------CEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEEc
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNG------RVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~  273 (319)
                      +.++.|...+++++.++.+|.|..+|...      .....+       -|...++++.+-. ++..+++.+.+++|.+||
T Consensus       255 VfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-------yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  255 VFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-------YHDSSVTSLQILQFSQQKLMASDMTGKIKLYD  327 (425)
T ss_pred             HHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-------EcCcchhhhhhhccccceEeeccCcCceeEee
Confidence            34455666678999999999999999532      223332       1333455665544 567888888999999999


Q ss_pred             C----CCceEEeecccCCCCCCCC--CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        274 P----DGQFLRAFGCWGSGDGEFK--GLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       274 ~----~g~~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .    -++-+.++      .+|.+  .+.-+.++++...+++++.|...|+|
T Consensus       328 ~R~~K~~~~V~qY------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  328 LRATKCKKSVMQY------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             ehhhhcccceeee------ecccccccccccccccccceEEEccCeeEEEEE
Confidence            3    24446666      44433  23334556676788889999999998

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=97.43  E-value=0.04  Score=43.70  Aligned_cols=131  Identities=14%  Similarity=0.162  Sum_probs=72.1

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCC-----CCCceeEEEe----CCCeEEEEeC-----
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ-----LEHPHYIAVS----NTNRVIVSDS-----  163 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~----~~g~~~~~~~-----  163 (319)
                      ++++|...++|+++++...-..|.+++ .+|+++..+..+......     +..-+...+.    .++.+.+.+.     
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~  224 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF  224 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC
Confidence            446788888899999998889999999 888998888533110000     1111223333    2333333322     


Q ss_pred             -----CCCEEEEEecCCceeeecCceeeeec-ccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEe
Q psy13998        164 -----NNHRVQIFDVNGRVFQSDGTFVGKFG-SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSF  235 (319)
Q Consensus       164 -----~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~  235 (319)
                           ..+.+..+|......    +++..+. ...  .-.....-.+..-|+|+.++.-+..+++..++++|+.+..+
T Consensus       225 ~~~~~s~~~v~~ld~~~~~~----~~~~~~~~~~~--~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv~~~  296 (299)
T PF14269_consen  225 NGTEPSRGLVLELDPETMTV----TLVREYSDHPD--GFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVVWEA  296 (299)
T ss_pred             CCCcCCCceEEEEECCCCEE----EEEEEeecCCC--cccccCCCcceECCCCCEEEecCCCceEEEECCCCCEEEEE
Confidence                 123333344332211    1112111 000  00011112345567888999888889999999998887654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.42  E-value=0.027  Score=50.18  Aligned_cols=146  Identities=13%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             CcEEEEc-CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-----CCeEEEEeCCCCEEEEEecCCceeeec
Q psy13998        109 NSIVVAD-SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-----TNRVIVSDSNNHRVQIFDVNGRVFQSD  181 (319)
Q Consensus       109 g~~~~~~-~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~g~~~~~~~~~~~i~~~~~~~~~~~~~  181 (319)
                      .++++.. ...+.++..| ..|+++..+......     .+..++-+.     +..--+.+-.++.+..||++-..    
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-----~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----  563 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-----PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----  563 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCc-----ceeEecccccccccCCCceEEEECCCceEEeccCCCC----
Confidence            3455554 3457899999 789999988643211     122332210     12223445567889999987310    


Q ss_pred             CceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE
Q psy13998        182 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV  261 (319)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v  261 (319)
                      .+++....   ........-++++.+.+|+ +++++.+|.|++||..|...++.-     ++....+.+|.++.||++++
T Consensus       564 ~k~v~~~~---k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~l-----p~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  564 NKLVDSQS---KQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTAL-----PGLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             Cceeeccc---cccccCCCceEEEecCCce-EEEEeCCCcEEeecccchhhhhcC-----CCCCCCeeEEEecCCCcEEE
Confidence            12221110   0012223446778777775 556677999999997664433321     33345688999999999877


Q ss_pred             EeCCCCEEEEEc
Q psy13998        262 GDSGNNRIQIFT  273 (319)
Q Consensus       262 ~~~~~~~i~~~~  273 (319)
                      +.+. ..|.+++
T Consensus       635 aTc~-tyLlLi~  645 (794)
T PF08553_consen  635 ATCK-TYLLLID  645 (794)
T ss_pred             Eeec-ceEEEEE
Confidence            7654 4566665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.39  E-value=0.05  Score=43.96  Aligned_cols=119  Identities=18%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             CceeEEEeCCCeEEEEeCCC------CEEEEEecCCceeeecCceeeeecccC---CcCCCCCCceeEEEcCCCc-EEEE
Q psy13998        146 HPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVFQSDGTFVGKFGSMG---NKAGQLEHPHYIAVSNTNR-VIVS  215 (319)
Q Consensus       146 ~~~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~-~~v~  215 (319)
                      .+.+|++.++|.+|++...+      ..|..++.+|.....- .+...+....   .....-...-+|+++++|+ +|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~-~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRF-PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceE-ccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            56789998899999999888      8999999886432110 0001110000   1112223567899999998 5544


Q ss_pred             eCC----C-----------CeEEEEeCC--CCEEEEeCCCCCC---cccccCcceEEEcCCCcEEEEeCC
Q psy13998        216 DSN----N-----------HRVQIFDVN--GRVITSFGSEGSE---EGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       216 ~~~----~-----------~~i~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                      ...    +           -+|..||..  +.....+......   ......+..+..-++++++|....
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence            321    1           246667754  3233332111100   003345778888899999998765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.39  E-value=0.0013  Score=54.75  Aligned_cols=69  Identities=16%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecC
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  174 (319)
                      .+.+.+++|+.+.++.+..|+.|.+||.+........       ..-.|..++|+|+|.+++.++..|.+.+||+.
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-------ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            5678899999999999999999999996555433331       11457899999999999999999999999975

>KOG1275|consensus

Probab=97.36  E-value=0.0096  Score=52.50  Aligned_cols=179  Identities=9%  Similarity=0.078  Sum_probs=101.4

Q ss_pred             cEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998        110 SIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG  189 (319)
Q Consensus       110 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  189 (319)
                      ..++.++-...+..+|..+....+..       +...+-...+..++++++++...|+|.+-|++.-      +.+..+ 
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~-------~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~------~~iht~-  213 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTT-------NVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF------ETIHTF-  213 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeee-------eccCCceEEEEecCcEEEeecccceEEeecCCcC------ceeeee-
Confidence            34555555667777885443322221       1122223344567899999999999999998743      445555 


Q ss_pred             ccCCcCCCCCCceeEEEcCCCcEEEEeCCCC---------eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-cE
Q psy13998        190 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH---------RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YI  259 (319)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~  259 (319)
                           ..|....  .+++-.|+++++++...         -|.+||..-  .+.+...    .....|.-+.+.|.- ..
T Consensus       214 -----~aHs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRm--mral~PI----~~~~~P~flrf~Psl~t~  280 (1118)
T KOG1275|consen  214 -----DAHSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRM--MRALSPI----QFPYGPQFLRFHPSLTTR  280 (1118)
T ss_pred             -----eccccce--eeeeccCCeEEEeecccccccccccchhhhhhhhh--hhccCCc----ccccCchhhhhcccccce
Confidence                 2333333  34566788888876543         356666432  1122111    111224445666652 34


Q ss_pred             EEEeCCCCEEEEEcCCC--ce-EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        260 SVGDSGNNRIQIFTPDG--QF-LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       260 ~v~~~~~~~i~~~~~~g--~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++..+..|.....|..+  +. ....-.    ......+.++.++++|..++-+..+|.|.+|
T Consensus       281 ~~V~S~sGq~q~vd~~~lsNP~~~~~~v----~p~~s~i~~fDiSsn~~alafgd~~g~v~~w  339 (1118)
T KOG1275|consen  281 LAVTSQSGQFQFVDTATLSNPPAGVKMV----NPNGSGISAFDISSNGDALAFGDHEGHVNLW  339 (1118)
T ss_pred             EEEEecccceeeccccccCCCccceeEE----ccCCCcceeEEecCCCceEEEecccCcEeee
Confidence            55556667777777321  11 111100    1223347889999999999999999999988

>PHA03098 kelch-like protein; Provisional

Probab=97.34  E-value=0.089  Score=45.88  Aligned_cols=191  Identities=15%  Similarity=0.120  Sum_probs=94.2

Q ss_pred             CCCcEEEEeCCCC------eEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcCCC
Q psy13998         65 PDNSIVVADSSNH------RVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQSDG  128 (319)
Q Consensus        65 ~~g~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~  128 (319)
                      .++.+|+.++.++      .+..    ||..+......  +..+   .+++. -++++|+.++.+     ..+..||+..
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~----yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVS----YDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEE----EeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCC
Confidence            4677888876432      4566    66655443221  1111   22222 257888887754     3577888544


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      ..-......   ... ..-.+++ .-++++|+.++..      +.+.+||+.+..      .....    ..+..... .
T Consensus       368 ~~W~~~~~l---p~~-r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~----~~p~~r~~-~  431 (534)
T PHA03098        368 SKWREEPPL---IFP-RYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK------WSKGS----PLPISHYG-G  431 (534)
T ss_pred             CceeeCCCc---CcC-CccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe------eeecC----CCCccccC-c
Confidence            332222111   000 1112222 2368899987632      457788876432      11100    00111111 1


Q ss_pred             eEEEcCCCcEEEEeCCC--------CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEE
Q psy13998        203 YIAVSNTNRVIVSDSNN--------HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRI  269 (319)
Q Consensus       203 ~~~~~~~g~~~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i  269 (319)
                      +++ ..++.+|+.++.+        ..+.+||+.......+.....   ..... +++. -++++|+.++.+     +.+
T Consensus       432 ~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~v  505 (534)
T PHA03098        432 CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF---PRINA-SLCI-FNNKIYVVGGDKYEYYINEI  505 (534)
T ss_pred             eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc---ccccc-eEEE-ECCEEEEEcCCcCCccccee
Confidence            222 2357888887642        248899976554444422111   01111 2222 267888888753     578


Q ss_pred             EEEcCCCceEEee
Q psy13998        270 QIFTPDGQFLRAF  282 (319)
Q Consensus       270 ~~~~~~g~~~~~~  282 (319)
                      .+||++...-..+
T Consensus       506 ~~yd~~~~~W~~~  518 (534)
T PHA03098        506 EVYDDKTNTWTLF  518 (534)
T ss_pred             EEEeCCCCEEEec
Confidence            8888765544433

>KOG4714|consensus

Probab=97.34  E-value=0.0087  Score=44.81  Aligned_cols=75  Identities=9%  Similarity=0.078  Sum_probs=55.1

Q ss_pred             ceeEEEcCC-CcEEEEeCCCCeEEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCc
Q psy13998        201 PHYIAVSNT-NRVIVSDSNNHRVQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       201 ~~~~~~~~~-g~~~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~  277 (319)
                      ..+++.+|. .++++++..+|.+-+||.+.. ....+     ...+...+..+-|.|. +.-+++++.+|.+..||..++
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-----l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-----LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-----HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            566777774 478888999999999996432 21111     1456667788999987 456778899999999998877


Q ss_pred             eEE
Q psy13998        278 FLR  280 (319)
Q Consensus       278 ~~~  280 (319)
                      ++.
T Consensus       257 ~l~  259 (319)
T KOG4714|consen  257 FLS  259 (319)
T ss_pred             eEE
Confidence            765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.34  E-value=0.07  Score=44.50  Aligned_cols=189  Identities=18%  Similarity=0.143  Sum_probs=95.0

Q ss_pred             CCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEEc---CCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVG---PDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA  141 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~  141 (319)
                      ++++|+ +..++.+..    +|..+++.......+..+.-.   .++.+++ ...++.++.+| .+|+.+..........
T Consensus       120 ~~~v~v-~~~~g~l~a----ld~~tG~~~W~~~~~~~~~ssP~v~~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        120 GGKVYI-GSEKGQVYA----LNAEDGEVAWQTKVAGEALSRPVVSDGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             CCEEEE-EcCCCEEEE----EECCCCCCcccccCCCceecCCEEECCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence            445554 456788888    887766655433322111111   1455555 45678999999 6899888775321100


Q ss_pred             CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC-C---CCCCc-eeEEEcCCCcEEEEe
Q psy13998        142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA-G---QLEHP-HYIAVSNTNRVIVSD  216 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~g~~~v~~  216 (319)
                       .......-++. ++.+|+ ...++.+..++...      |+.+.......... .   ..... ..-.+ .++.+|++.
T Consensus       194 -~~~~~~sP~v~-~~~v~~-~~~~g~v~a~d~~~------G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~  263 (394)
T PRK11138        194 -TLRGESAPATA-FGGAIV-GGDNGRVSAVLMEQ------GQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALA  263 (394)
T ss_pred             -cccCCCCCEEE-CCEEEE-EcCCCEEEEEEccC------ChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEE
Confidence             00000111122 344444 45677888777653      33332221100000 0   00000 01111 145666655


Q ss_pred             CCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEe
Q psy13998        217 SNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRA  281 (319)
Q Consensus       217 ~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~  281 (319)
                       .++.++.+|. +|+.+.+...        ..+..+... ++++|+. ..++.++.++. +|+.+..
T Consensus       264 -~~g~l~ald~~tG~~~W~~~~--------~~~~~~~~~-~~~vy~~-~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        264 -YNGNLVALDLRSGQIVWKREY--------GSVNDFAVD-GGRIYLV-DQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             -cCCeEEEEECCCCCEEEeecC--------CCccCcEEE-CCEEEEE-cCCCeEEEEECCCCcEEEc
Confidence             4788999995 6766654421        112223332 4566665 46789999994 6766544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.28  E-value=0.022  Score=47.65  Aligned_cols=138  Identities=14%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEe-cCCce
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRV  177 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~  177 (319)
                      .|..+..+|+|+.++. .+++...+|...+......          ......+|.+.+++.+.. ....|.++. .+.  
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----------G~g~~~vw~~~n~yAv~~-~~~~I~I~kn~~~--   99 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----------GSGLSFVWSSRNRYAVLE-SSSTIKIYKNFKN--   99 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----------EE-SEEEE-TSSEEEEE--TTS-EEEEETTEE--
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----------CceeEEEEecCccEEEEE-CCCeEEEEEcCcc--
Confidence            6899999999986665 4567788887433332333          122667888866655544 467788763 221  


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                           .....+..       ...+..|-  . |.++...+ ++.|..||. +++.++++.        ...+..+.|+++
T Consensus       100 -----~~~k~i~~-------~~~~~~If--~-G~LL~~~~-~~~i~~yDw~~~~~i~~i~--------v~~vk~V~Ws~~  155 (443)
T PF04053_consen  100 -----EVVKSIKL-------PFSVEKIF--G-GNLLGVKS-SDFICFYDWETGKLIRRID--------VSAVKYVIWSDD  155 (443)
T ss_dssp             ------TT------------SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEES--------S-E-EEEEE-TT
T ss_pred             -----ccceEEcC-------CcccceEE--c-CcEEEEEC-CCCEEEEEhhHcceeeEEe--------cCCCcEEEEECC
Confidence                 00001100       00122222  2 76666554 347999996 577777772        122578999999


Q ss_pred             CcEEEEeCCCCEEEEEcCC
Q psy13998        257 GYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~~~  275 (319)
                      |.+++..+ ++.+++++.+
T Consensus       156 g~~val~t-~~~i~il~~~  173 (443)
T PF04053_consen  156 GELVALVT-KDSIYILKYN  173 (443)
T ss_dssp             SSEEEEE--S-SEEEEEE-
T ss_pred             CCEEEEEe-CCeEEEEEec
Confidence            98777665 4567776644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441|consensus

Probab=97.27  E-value=0.077  Score=46.31  Aligned_cols=190  Identities=15%  Similarity=0.191  Sum_probs=100.9

Q ss_pred             cceEEcCCCcEEEEeCCC------CeEEEeccccccccceeeE--EecC---ceeeEEcCCCcEEEEcCCCC-----eEE
Q psy13998         59 RGIAVGPDNSIVVADSSN------HRVQVCFPHFDLKTNCVFL--AFTW---PRGIAVGPDNSIVVADSSNH-----RVQ  122 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~------~~v~~~~~~~~~~~~~~~~--~~~~---~~~l~~~~~g~~~~~~~~~~-----~i~  122 (319)
                      .++++- +|.+|++|+.+      ..+.+    ||..++....  .+..   -.+++.. +|.+|+.++.++     .+-
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~----YD~~~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE  399 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVER----YDPRTNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVE  399 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEE----ecCCCCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEE
Confidence            445554 56899999887      35667    7776555332  1111   1233332 688999988774     577


Q ss_pred             EEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC------CEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        123 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      .||+....-......   . ....-.+++ .-+|.+|+.++.+      ..+..||+.+..-.    .+...      . 
T Consensus       400 ~YDp~~~~W~~va~m---~-~~r~~~gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~----~~~~M------~-  463 (571)
T KOG4441|consen  400 CYDPVTNKWTPVAPM---L-TRRSGHGVA-VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT----LIAPM------N-  463 (571)
T ss_pred             EecCCCCcccccCCC---C-cceeeeEEE-EECCEEEEEcCcCCCccccceEEEEcCCCCcee----ecCCc------c-
Confidence            888655432222111   0 001112222 2378999998744      45778887653111    11100      0 


Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCC-----eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC----
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNH-----RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN----  267 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~----  267 (319)
                      ....-.+++. -++.+|+.++.++     .|..||+.......+....    ......+++.. ++.+|+.++.++    
T Consensus       464 ~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~----~~rs~~g~~~~-~~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  464 TRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT----SPRSAVGVVVL-GGKLYAVGGFDGNNNL  537 (571)
T ss_pred             cccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc----cccccccEEEE-CCEEEEEecccCcccc
Confidence            0011122333 3678999887654     3778997765554442111    11112334443 468888888653    


Q ss_pred             -EEEEEcCCC
Q psy13998        268 -RIQIFTPDG  276 (319)
Q Consensus       268 -~i~~~~~~g  276 (319)
                       +|..||+..
T Consensus       538 ~~ve~ydp~~  547 (571)
T KOG4441|consen  538 NTVECYDPET  547 (571)
T ss_pred             ceeEEcCCCC
Confidence             577777543

>KOG2314|consensus

Probab=97.26  E-value=0.088  Score=44.12  Aligned_cols=134  Identities=10%  Similarity=0.139  Sum_probs=83.1

Q ss_pred             cceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec--CceeeEEcCCCcEEEEcC-----------CCCeEEEEc
Q psy13998         59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--WPRGIAVGPDNSIVVADS-----------SNHRVQVFQ  125 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~~~-----------~~~~i~~~~  125 (319)
                      +-+.|+|.|.++++-... -|.+    |-..+-.....+.  .+.-+.|+|+.+++++=+           ....+.+||
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~l----WGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIAL----WGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceee----ecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            468899999988886654 4667    6554444444444  457789999988887732           236899999


Q ss_pred             -CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        126 -SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                       .+|...+.+....   .......-..++.|+++++.-.. +.|.+|+...-. -.+++           .-....+..+
T Consensus       289 I~tG~lkrsF~~~~---~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~K-----------slki~gIr~F  352 (698)
T KOG2314|consen  289 IATGLLKRSFPVIK---SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LLDKK-----------SLKISGIRDF  352 (698)
T ss_pred             ccccchhcceeccC---CCccccceEEeccCCceeEEecc-ceEEEEecCcee-eeccc-----------ccCCccccCc
Confidence             7888777765431   12122233578888887776544 678888754210 00111           2223445667


Q ss_pred             EEcCCCcEE
Q psy13998        205 AVSNTNRVI  213 (319)
Q Consensus       205 ~~~~~g~~~  213 (319)
                      .++|.+.++
T Consensus       353 swsP~~~ll  361 (698)
T KOG2314|consen  353 SWSPTSNLL  361 (698)
T ss_pred             ccCCCcceE
Confidence            788876654

>KOG4714|consensus

Probab=97.25  E-value=0.0029  Score=47.23  Aligned_cols=75  Identities=7%  Similarity=0.078  Sum_probs=54.1

Q ss_pred             cCceeeEEcCCC-cEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecC
Q psy13998         98 TWPRGIAVGPDN-SIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus        98 ~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~  174 (319)
                      ..+.+++.+|.. ++.++++.++.+.+||. +......+.     ..|...++.+-|+| ++..+++++++|.+..||..
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-----~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-----KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-----HHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            356677777754 68888899999999994 332111111     34556678899998 56788889999999999998


Q ss_pred             Cce
Q psy13998        175 GRV  177 (319)
Q Consensus       175 ~~~  177 (319)
                      +..
T Consensus       255 ~~~  257 (319)
T KOG4714|consen  255 TTF  257 (319)
T ss_pred             Cce
Confidence            643

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.24  E-value=0.093  Score=43.85  Aligned_cols=50  Identities=14%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998        120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      .|.+|+..|+.+..+....      ..+.++.|..+.++++. ..+|.+++||+.|.
T Consensus        62 ~I~iys~sG~ll~~i~w~~------~~iv~~~wt~~e~LvvV-~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDS------GRIVGMGWTDDEELVVV-QSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEEECCCCCEeEEEEECC------CCEEEEEECCCCeEEEE-EcCCEEEEEeCCCc
Confidence            5999999999988875331      57789999886666554 57899999999774

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621|consensus

Probab=97.16  E-value=0.0025  Score=54.20  Aligned_cols=109  Identities=12%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC--ceEEe
Q psy13998        204 IAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG--QFLRA  281 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g--~~~~~  281 (319)
                      -+++..+.+++.+...|.+++|+..+...+.....+    .........++++.++.++++..++|.+|-.+.  ..-..
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~----~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG----ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccC----ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            355667788888999999999998766555543221    222345677888888889999999999997431  11111


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      +..+ ....|...+++++|++|+.-+.+|...|.|.
T Consensus       115 ~~t~-~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~  149 (726)
T KOG3621|consen  115 YVTP-CDKSHKCRVTALEWSKNGMKLYSGDSQGKVV  149 (726)
T ss_pred             eecc-ccccCCceEEEEEecccccEEeecCCCceEE
Confidence            1111 1123567899999999999777777777764

>KOG1275|consensus

Probab=97.13  E-value=0.034  Score=49.30  Aligned_cols=177  Identities=7%  Similarity=0.037  Sum_probs=101.4

Q ss_pred             EEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCC
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLE  145 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~  145 (319)
                      .++.++-...+..    +|+.+.....  +...+-...+-.+++.+.++...|+|.+-| .+.+.+.++      ..|..
T Consensus       149 ~~i~Gg~Q~~li~----~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~------~aHs~  218 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIH----IDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTF------DAHSG  218 (1118)
T ss_pred             ceeecchhhheee----eecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeee------ecccc
Confidence            3444443344444    5665554443  233333334445678888998999999999 455677777      44555


Q ss_pred             CceeEEEeCCCeEEEEeCCC---------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEE
Q psy13998        146 HPHYIAVSNTNRVIVSDSNN---------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVS  215 (319)
Q Consensus       146 ~~~~l~~~~~g~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~  215 (319)
                      .+.  .|+-.|+++++++..         .-|.+||++.-.         .+..    ......|.-+.+.|.- ..+++
T Consensus       219 siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr---------al~P----I~~~~~P~flrf~Psl~t~~~V  283 (1118)
T KOG1275|consen  219 SIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR---------ALSP----IQFPYGPQFLRFHPSLTTRLAV  283 (1118)
T ss_pred             cee--eeeccCCeEEEeecccccccccccchhhhhhhhhhh---------ccCC----cccccCchhhhhcccccceEEE
Confidence            444  445568888887643         346677776321         1100    1111233445556542 23444


Q ss_pred             eCCCCeEEEEeCCC---CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        216 DSNNHRVQIFDVNG---RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       216 ~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      .+..|.....|+.+   ........    ....+.+.+++++++|..++-+..++.|.+|..
T Consensus       284 ~S~sGq~q~vd~~~lsNP~~~~~~v----~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  284 TSQSGQFQFVDTATLSNPPAGVKMV----NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EecccceeeccccccCCCccceeEE----ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            45566777776321   11111100    112233678899999999999999999999984

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=97.11  E-value=0.096  Score=41.58  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCc-----ccccCcceEEEc----CCCcEEEEeC--
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEE-----GQLKFPRGVAVD----DQGYISVGDS--  264 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~----~~g~~~v~~~--  264 (319)
                      ...+++++...++|.++++...-..|++++ .+|+.+..++......     ..+..-....+-    +++.+.+-+.  
T Consensus       142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~  221 (299)
T PF14269_consen  142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNAN  221 (299)
T ss_pred             CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCC
Confidence            345668888888999999999999999999 5788888875331100     012222223332    2333333322  


Q ss_pred             --------CCCEEEEEcCCCceEEeecccC--CCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        265 --------GNNRIQIFTPDGQFLRAFGCWG--SGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       265 --------~~~~i~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                              ..+.+..+|+..+....+....  .........-++..-|+|+.+++-+..+++.
T Consensus       222 ~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~  284 (299)
T PF14269_consen  222 SDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRIS  284 (299)
T ss_pred             CCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEE
Confidence                    3355666665443332221110  0011111223355667889888888877653

>KOG4649|consensus

Probab=97.09  E-value=0.075  Score=40.13  Aligned_cols=59  Identities=19%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             EEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceee----EEcC-CCcEEEEcCCCCeEEEEc
Q psy13998         62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI----AVGP-DNSIVVADSSNHRVQVFQ  125 (319)
Q Consensus        62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l----~~~~-~g~~~~~~~~~~~i~~~~  125 (319)
                      ..++++.++..++.|++.+.    .|..+.+.+....-+-++    ++++ ++.+|++.. .+.+...+
T Consensus       100 ~~d~~~glIycgshd~~~ya----lD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t-~G~vlavt  163 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYA----LDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAIT-AGAVLAVT  163 (354)
T ss_pred             EEcCCCceEEEecCCCcEEE----ecccccceEEecccCCceeccceecCCCceEEEEec-cceEEEEc
Confidence            45677888888999999999    888777777655544333    3344 566777654 34555555

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.07  E-value=0.056  Score=45.16  Aligned_cols=108  Identities=15%  Similarity=0.154  Sum_probs=57.0

Q ss_pred             eeEEEeCCCeE-EEEeCCCC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE-EEeCCCC--e
Q psy13998        148 HYIAVSNTNRV-IVSDSNNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNH--R  221 (319)
Q Consensus       148 ~~l~~~~~g~~-~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~--~  221 (319)
                      ...+|+|||+. .++...++  .|+++|+.++.       +.++.      .....-..=.++|+|+.+ ++....|  .
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-------~~~Lt------~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~  307 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-------LPRLT------NGFGINTSPSWSPDGSKIVFTSDRGGRPQ  307 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-------ceecc------cCCccccCccCCCCCCEEEEEeCCCCCcc
Confidence            44578898854 44544554  46667777642       11110      000111123578898543 3433333  5


Q ss_pred             EEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-CCE--EEEEcC
Q psy13998        222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-NNR--IQIFTP  274 (319)
Q Consensus       222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-~~~--i~~~~~  274 (319)
                      |+++++++....++....      ..-..-.++|||..++..+. .+.  |.+.+.
T Consensus       308 I~~~~~~g~~~~riT~~~------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         308 IYLYDLEGSQVTRLTFSG------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             eEEECCCCCceeEeeccC------CCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            888888887665552211      11124567899976665542 333  666664

>PHA03098 kelch-like protein; Provisional

Probab=97.00  E-value=0.21  Score=43.63  Aligned_cols=180  Identities=13%  Similarity=0.044  Sum_probs=85.8

Q ss_pred             CCCcEEEEcCCC------CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCC
Q psy13998        107 PDNSIVVADSSN------HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNG  175 (319)
Q Consensus       107 ~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~  175 (319)
                      .++.+|+.++.+      ..+..||..............   .... .+++. -++++|+.++.+     ..+..||+.+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~R~~-~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY---PRKN-PGVTV-FNNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc---cccc-ceEEE-ECCEEEEEeCCCCCEecceEEEEcCCC
Confidence            356788887643      257788854443333321110   1111 22322 368899988754     3466777654


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC------CeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      .      +... ...   .+.. ....+++. -++++|+.++..      +.+.+||+............   ..... .
T Consensus       368 ~------~W~~-~~~---lp~~-r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~-~  431 (534)
T PHA03098        368 S------KWRE-EPP---LIFP-RYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP---ISHYG-G  431 (534)
T ss_pred             C------ceee-CCC---cCcC-CccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC---ccccC-c
Confidence            3      1111 000   0101 11112222 367888887631      46889997655444332111   11111 1


Q ss_pred             eEEEcCCCcEEEEeCCC--------CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        250 GVAVDDQGYISVGDSGN--------NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~--------~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      +++. -++.+|+.++.+        ..+.+||+....-..+....   ..... .+++. -++++|+.++.+
T Consensus       432 ~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~r~~-~~~~~-~~~~iyv~GG~~  497 (534)
T PHA03098        432 CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN---FPRIN-ASLCI-FNNKIYVVGGDK  497 (534)
T ss_pred             eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC---ccccc-ceEEE-ECCEEEEEcCCc
Confidence            2222 356888887643        24888886544333332110   11111 12222 267888888764

>PHA02790 Kelch-like protein; Provisional

Probab=96.99  E-value=0.19  Score=43.11  Aligned_cols=182  Identities=8%  Similarity=-0.018  Sum_probs=89.1

Q ss_pred             CCCcEEEEeCCC-----CeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC--CeEEEEcCCCcEEE
Q psy13998         65 PDNSIVVADSSN-----HRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN--HRVQVFQSDGTFVG  132 (319)
Q Consensus        65 ~~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~--~~i~~~~~~~~~~~  132 (319)
                      .++.+|+.++.+     ..+..    |+..++....  .+..+   .+++ .-++.+|+.++.+  ..+..|++....-.
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~----Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~  344 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIA----VNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWV  344 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEE----EECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEE
Confidence            456788887643     24666    6665443322  11112   1222 2367899988753  45788885433222


Q ss_pred             EecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      .....   ...... .+++ .-+|++|+.++.+   ..+..||+....      ..... .   ....... .+++ .-+
T Consensus       345 ~~~~l---~~~r~~-~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~------W~~~~-~---m~~~r~~-~~~~-~~~  407 (480)
T PHA02790        345 NMPSL---LKPRCN-PAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ------WQFGP-S---TYYPHYK-SCAL-VFG  407 (480)
T ss_pred             ECCCC---CCCCcc-cEEE-EECCEEEEecCcCCCCccEEEEeCCCCE------EEeCC-C---CCCcccc-ceEE-EEC
Confidence            22111   101111 1222 3368999998754   346677776431      11100 0   0100111 1222 346


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEEEcCCC
Q psy13998        210 NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQIFTPDG  276 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~~~~~g  276 (319)
                      |++|+.++   .+.+||+....-..+....   ..... .+++.- +|++|+.|+.+     ..+..||+..
T Consensus       408 ~~IYv~GG---~~e~ydp~~~~W~~~~~m~---~~r~~-~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        408 RRLFLVGR---NAEFYCESSNTWTLIDDPI---YPRDN-PELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CEEEEECC---ceEEecCCCCcEeEcCCCC---CCccc-cEEEEE-CCEEEEECCcCCCcccceEEEEECCC
Confidence            78999874   4678887654444332111   11111 233332 56899998753     3466666543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.99  E-value=0.043  Score=35.67  Aligned_cols=95  Identities=9%  Similarity=0.176  Sum_probs=62.3

Q ss_pred             cCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeeccc
Q psy13998        207 SNTN-RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCW  285 (319)
Q Consensus       207 ~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~  285 (319)
                      +.+| +-+++++.|..|++|+-+ ..+..+.       ....+..++-... ..|+.+..+|+|-+|+..-+.-+.-   
T Consensus        11 d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~-------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRiK---   78 (111)
T PF14783_consen   11 DGDGENELLVGSDDFEIRVFKGD-EIVAEIT-------ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRIK---   78 (111)
T ss_pred             CCCCcceEEEecCCcEEEEEeCC-cEEEEEe-------cccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeeec---
Confidence            3344 578888999999999865 4555542       2335667776655 4567778899999999744333322   


Q ss_pred             CCCCCCCCCcceEEE---ccCCc-EEEEeCCCCeEEe
Q psy13998        286 GSGDGEFKGLEGVAV---MSNGN-ILVCDRENHRIQV  318 (319)
Q Consensus       286 ~~~~~~~~~~~~l~~---~~~g~-~~v~~~~~~~i~v  318 (319)
                           ....|.+++.   +.||. -++++..+|+|-+
T Consensus        79 -----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   79 -----SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             -----cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                 2223666654   34454 7899999998854

>KOG2066|consensus

Probab=96.97  E-value=0.13  Score=45.08  Aligned_cols=185  Identities=14%  Similarity=0.125  Sum_probs=105.2

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEe
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKF  134 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~  134 (319)
                      +.+.+++++  ++.++.++.+|.|++    ++....- ...+..-..   +.+|..+.+++.||+|.+.. .+++....+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~----~~~~~~~-~~~~~~s~~---~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYL----TTCQGNP-KTNFDHSSS---ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEE----EecCCcc-ccccccccc---ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            455666665  678899999999999    6553221 111111111   56789999999999999887 344444433


Q ss_pred             cCCCccCCCCCCceeEEEeCC-----CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        135 GSMGNKAGQLEHPHYIAVSNT-----NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      .       ....+..++++|+     .+.+++++..| +.++..+         .+...... ........+.++.+.  
T Consensus       110 d-------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~---------wlgnk~~v-~l~~~eG~I~~i~W~--  169 (846)
T KOG2066|consen  110 D-------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN---------WLGNKDSV-VLSEGEGPIHSIKWR--  169 (846)
T ss_pred             e-------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh---------hhcCccce-eeecCccceEEEEec--
Confidence            2       1145688999987     46788887777 6555332         11100000 001223345666663  


Q ss_pred             CcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        210 NRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      |++++=.. +-.|++||. ..+.+..+..+.........|..+.|.++.+++ .|.+ .+|.+..
T Consensus       170 g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW~-d~v~i~~  231 (846)
T KOG2066|consen  170 GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGWG-DSVKICS  231 (846)
T ss_pred             CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-EecC-CeEEEEE
Confidence            45544333 445899995 455555554333222333457789998775554 4443 3565555

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.12  Score=39.77  Aligned_cols=166  Identities=14%  Similarity=0.154  Sum_probs=91.7

Q ss_pred             EEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        121 VQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      +..++..|+.+.....+       ...++++++|.- .-++....- ....+||.++.      +.........  ..|+
T Consensus        51 ~a~~~eaGk~v~~~~lp-------aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~------~~pv~~~s~~--~RHf  115 (366)
T COG3490          51 AATLSEAGKIVFATALP-------ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGA------QEPVTLVSQE--GRHF  115 (366)
T ss_pred             EEEEccCCceeeeeecc-------cccCCeecCCCCcceEEEEecCCceEEEECCCCC------cCcEEEeccc--Ccee
Confidence            34456677776655433       334778888843 333333333 34567777653      1111111100  0011


Q ss_pred             CCceeEEEcCCCcEEEEeCC-----CCeEEEEeCCCCE--EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----
Q psy13998        199 EHPHYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRV--ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----  266 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~-----~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----  266 (319)
                       .-. =.|+++|.++.+...     .|.|-+||.+...  +-.+      +.+.-.|..+.+.+||+.++...+.     
T Consensus       116 -yGH-Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~------~t~GiGpHev~lm~DGrtlvvanGGIethp  187 (366)
T COG3490         116 -YGH-GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF------STHGIGPHEVTLMADGRTLVVANGGIETHP  187 (366)
T ss_pred             -ecc-cccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc------ccCCcCcceeEEecCCcEEEEeCCceeccc
Confidence             111 257899977665432     4788899965322  2333      4455568889999999877665431     


Q ss_pred             -------------CEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        267 -------------NRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       267 -------------~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                                   -.+.+.+ .+|+++.....+.  ..+...+..++..+||.+++.+-
T Consensus       188 dfgR~~lNldsMePSlvlld~atG~liekh~Lp~--~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         188 DFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA--SLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ccCccccchhhcCccEEEEeccccchhhhccCch--hhhhcceeeeeeCCCCcEEEEEE
Confidence                         2344445 4565554432211  13445688899999999877653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.87  E-value=0.18  Score=41.02  Aligned_cols=193  Identities=19%  Similarity=0.352  Sum_probs=96.0

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeEEe--cCc------eeeEEcCCCc---EEEEcCC-C--CeEEEEc--CCCcEE
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAF--TWP------RGIAVGPDNS---IVVADSS-N--HRVQVFQ--SDGTFV  131 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~------~~l~~~~~g~---~~~~~~~-~--~~i~~~~--~~~~~~  131 (319)
                      .+++.....+-+.+    |+++.. .+..+  ..+      .++.+  +|+   +.++..+ +  .+|.+|.  .....+
T Consensus        69 SlIigTdK~~GL~V----YdL~Gk-~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L  141 (381)
T PF02333_consen   69 SLIIGTDKKGGLYV----YDLDGK-ELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL  141 (381)
T ss_dssp             -EEEEEETTTEEEE----EETTS--EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred             ceEEEEeCCCCEEE----EcCCCc-EEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence            35555556678888    888533 22222  123      23333  233   3333322 2  4677775  333344


Q ss_pred             EEecCCCc-cCCCCCCceeEEEe--C-CCeEEE-EeCCCCEEEEEecCC-ceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        132 GKFGSMGN-KAGQLEHPHYIAVS--N-TNRVIV-SDSNNHRVQIFDVNG-RVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       132 ~~~~~~~~-~~~~~~~~~~l~~~--~-~g~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      ..+..... .......+.++++-  + +|.+|+ ....++.+.-|.+.. ..-...++.++.|..       ...+.+++
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-------~sQ~EGCV  214 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-------GSQPEGCV  214 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------SS-EEEEE
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-------CCcceEEE
Confidence            44432111 11233567888874  3 466554 455678887775531 000012245666643       23678889


Q ss_pred             EcCC-CcEEEEeCCCCeEEEEeCC--C-CEEEEeCCCCCCcccccCcceEEEc--CC--CcEEEEeCCCCEEEEEcCCC
Q psy13998        206 VSNT-NRVIVSDSNNHRVQIFDVN--G-RVITSFGSEGSEEGQLKFPRGVAVD--DQ--GYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       206 ~~~~-g~~~v~~~~~~~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~~--~~--g~~~v~~~~~~~i~~~~~~g  276 (319)
                      ++.. +.+|+... +.-|+.|+.+  + .....+... .......-+.+|++-  ++  |.+++++-++++..+|+..+
T Consensus       215 VDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  215 VDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EecccCCEEEecC-ccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9864 56666654 6678999853  2 211111110 001123346677763  33  46888888899999999765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2395|consensus

Probab=96.85  E-value=0.23  Score=41.68  Aligned_cols=145  Identities=12%  Similarity=0.165  Sum_probs=83.8

Q ss_pred             CCcE-EEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCe-------EEEEeCCCCEEEEEecCCcee
Q psy13998        108 DNSI-VVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-------VIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus       108 ~g~~-~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-------~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      +.++ |..+.....++..| ..|+++..+.....       +.-+.+.|+.+       --+.+-.++.|..||++-+  
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--  414 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--  414 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-------cceeeccCCcchhcccccccEEeecCCceEEeccccc--
Confidence            3444 44455567889999 78999888854321       23333444321       1123446788899998622  


Q ss_pred             eecCc-eeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998        179 QSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       179 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g  257 (319)
                         +. .+.......  ......-.|++...+|. +++++.+|.|++||..+...++.-     ++....+..|.++.+|
T Consensus       415 ---~~~kl~~~q~kq--y~~k~nFsc~aTT~sG~-IvvgS~~GdIRLYdri~~~AKTAl-----PgLG~~I~hVdvtadG  483 (644)
T KOG2395|consen  415 ---GKNKLAVVQSKQ--YSTKNNFSCFATTESGY-IVVGSLKGDIRLYDRIGRRAKTAL-----PGLGDAIKHVDVTADG  483 (644)
T ss_pred             ---Ccceeeeeeccc--cccccccceeeecCCce-EEEeecCCcEEeehhhhhhhhhcc-----cccCCceeeEEeeccC
Confidence               11 111110000  11122345666666664 566677999999998665443331     4444567889999999


Q ss_pred             cEEEEeCCCCEEEEEc
Q psy13998        258 YISVGDSGNNRIQIFT  273 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~  273 (319)
                      .++++.. +..+.+.+
T Consensus       484 Kwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  484 KWILATC-KTYLLLID  498 (644)
T ss_pred             cEEEEec-ccEEEEEE
Confidence            8777655 45666666

>KOG3617|consensus

Probab=96.83  E-value=0.0044  Score=54.18  Aligned_cols=106  Identities=8%  Similarity=0.082  Sum_probs=78.4

Q ss_pred             eeEEEcCCCcEEEEeC----CCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc
Q psy13998        202 HYIAVSNTNRVIVSDS----NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~  277 (319)
                      +-..|+|...++.+.+    ..|.|.+|-..|++.+..       ...-...+++|+|..-+++.+...+.+.+|..+.+
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-------t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-------TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-------ccceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence            3356677666665443    357788887777644333       11123467999999888889999999999997766


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...++.     ..|...+..+.|+++|..+++...-|.+.+|
T Consensus        92 e~htv~-----~th~a~i~~l~wS~~G~~l~t~d~~g~v~lw  128 (1416)
T KOG3617|consen   92 ETHTVV-----ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLW  128 (1416)
T ss_pred             eeeeec-----cCCCCCceeEEecCCCCeEEEcCCCceeEEE
Confidence            666653     4677788999999999999999999998887

>KOG0280|consensus

Probab=96.80  E-value=0.16  Score=39.12  Aligned_cols=107  Identities=7%  Similarity=0.038  Sum_probs=68.9

Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEE--EeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcC--C
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVIT--SFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTP--D  275 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~--~  275 (319)
                      .++.+++.+.-+++...+|.+.+.+.+ .....  .+      ..|.....-..|+.. -+++.+++.|+.+..||.  .
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w------k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW------KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc------cccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence            345666666555555667777755533 22222  23      344445556666644 379999999999999993  3


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEcc-CCcEEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMS-NGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~v~~~~~~~i~v~  319 (319)
                      ++.+..-.     ..|...+.+|.-+| .+.++++|+.|..|++|
T Consensus       199 ~~~i~~n~-----kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  199 KTFIWHNS-----KVHTSGVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             cceeeecc-----eeeecceEEEecCCCCCceEEEeccccceeee
Confidence            44443311     34566677777765 45699999999999987

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.76  E-value=0.32  Score=42.19  Aligned_cols=50  Identities=18%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        256 QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      .|.+++.+..++.++.+| .+|+.+..+....   ...  ..=+.+..+|+.|++.
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~---~~~--a~P~ty~~~G~qYv~~  521 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS---GIV--GPPVTYEQDGKQYVAV  521 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC---Cce--ecCEEEEeCCEEEEEE
Confidence            345666778899999999 6899988774311   111  1224445688866654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.75  E-value=0.31  Score=41.78  Aligned_cols=151  Identities=12%  Similarity=0.132  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       117 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      .....+++|.+|.+...+......      ...+...++|.+++...  ..+..+|..|+..       ......+.   
T Consensus       126 ~~~~~~~iD~~G~Vrw~~~~~~~~------~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~-------~~~~l~~~---  187 (477)
T PF05935_consen  126 SSSYTYLIDNNGDVRWYLPLDSGS------DNSFKQLPNGNLLIGSG--NRLYEIDLLGKVI-------WEYDLPGG---  187 (477)
T ss_dssp             BEEEEEEEETTS-EEEEE-GGGT--------SSEEE-TTS-EEEEEB--TEEEEE-TT--EE-------EEEE--TT---
T ss_pred             CCceEEEECCCccEEEEEccCccc------cceeeEcCCCCEEEecC--CceEEEcCCCCEE-------EeeecCCc---
Confidence            456788999999988777433211      11166678898887665  8889899887532       22211110   


Q ss_pred             CCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCEEEEeCCCCCC---------------------c
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVITSFGSEGSE---------------------E  242 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~---------------------~  242 (319)
                      ....-+.+...|+|++++....             ...|..+|.+|+.+..+......                     .
T Consensus       188 ~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~  267 (477)
T PF05935_consen  188 YYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG  267 (477)
T ss_dssp             EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred             ccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence            0111244677788877765541             34577788888877775322110                     0


Q ss_pred             ccccCcceEEEcC-CCcEEEEeCCCCEEEEEc-CCCceEEeeccc
Q psy13998        243 GQLKFPRGVAVDD-QGYISVGDSGNNRIQIFT-PDGQFLRAFGCW  285 (319)
Q Consensus       243 ~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~  285 (319)
                      ......+++.+++ ++.++++...-+.|..++ .++++...++..
T Consensus       268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            1112357899988 678999988888999999 678887777643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PHA02790 Kelch-like protein; Provisional

Probab=96.70  E-value=0.34  Score=41.62  Aligned_cols=176  Identities=8%  Similarity=-0.086  Sum_probs=85.1

Q ss_pred             CCcEEEEcCCC-----CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--CEEEEEecCCceeee
Q psy13998        108 DNSIVVADSSN-----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--HRVQIFDVNGRVFQS  180 (319)
Q Consensus       108 ~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--~~i~~~~~~~~~~~~  180 (319)
                      ++.+|+.++.+     ..+..||+....-..........   .. .+++ .-++.+|+.++.+  ..+..|++...    
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r---~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n----  341 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR---LY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDA----  341 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh---hc-ceEE-EECCEEEEECCcCCCCceEEEECCCC----
Confidence            46788887643     35778885443322222111000   11 2222 3468999988753  35677776432    


Q ss_pred             cCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC---CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998        181 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g  257 (319)
                        +... ...   .+...... +++ .-+|++|+.++.+   ..+..||+.............   ..... +++ .-+|
T Consensus       342 --~W~~-~~~---l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~---~r~~~-~~~-~~~~  408 (480)
T PHA02790        342 --AWVN-MPS---LLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY---PHYKS-CAL-VFGR  408 (480)
T ss_pred             --eEEE-CCC---CCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC---ccccc-eEE-EECC
Confidence              1111 100   01111111 222 2368999987743   357788886554444321110   11111 222 2357


Q ss_pred             cEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      .+|+.++   .+.+||++...-..+...    .....-.+++. -+|++|+.|+.+
T Consensus       409 ~IYv~GG---~~e~ydp~~~~W~~~~~m----~~~r~~~~~~v-~~~~IYviGG~~  456 (480)
T PHA02790        409 RLFLVGR---NAEFYCESSNTWTLIDDP----IYPRDNPELII-VDNKLLLIGGFY  456 (480)
T ss_pred             EEEEECC---ceEEecCCCCcEeEcCCC----CCCccccEEEE-ECCEEEEECCcC
Confidence            8999874   467888654333333110    11111123333 367899998754

>smart00320 WD40 WD40 repeats

Probab=96.68  E-value=0.0073  Score=30.31  Aligned_cols=30  Identities=20%  Similarity=0.400  Sum_probs=26.2

Q ss_pred             CCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        290 GEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       290 ~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+...+.++.+.+++.++++++.++.+++|
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~   39 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLW   39 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence            445578999999988999999999999998

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.65  E-value=0.056  Score=46.45  Aligned_cols=71  Identities=21%  Similarity=0.422  Sum_probs=46.7

Q ss_pred             CCCCceeEEEcCC-CcEEEEeCCC-------------------CeEEEEeCCCC-------EEEEe---CCC--------
Q psy13998        197 QLEHPHYIAVSNT-NRVIVSDSNN-------------------HRVQIFDVNGR-------VITSF---GSE--------  238 (319)
Q Consensus       197 ~~~~~~~~~~~~~-g~~~v~~~~~-------------------~~i~~~~~~~~-------~~~~~---~~~--------  238 (319)
                      .+..|-++.++|. +.+|++.+..                   |.|+.|++++.       ....+   +..        
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            4677888999984 6888775433                   47888886543       11111   110        


Q ss_pred             -CCCcccccCcceEEEcCCCcEEEEeCCCC
Q psy13998        239 -GSEEGQLKFPRGVAVDDQGYISVGDSGNN  267 (319)
Q Consensus       239 -~~~~~~~~~~~~i~~~~~g~~~v~~~~~~  267 (319)
                       ......+..|..|+|+++|++|++.....
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~  457 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGG  457 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCCCC
Confidence             01234577899999999999999876543

>KOG1008|consensus

Probab=96.64  E-value=0.00073  Score=56.74  Aligned_cols=201  Identities=14%  Similarity=0.186  Sum_probs=113.1

Q ss_pred             cCceeeEEcCC--CcEEEEcCCCCeEEEEcC-CCcE-EEEecCCCccCCCCCCceeEEEeC-CCeEEEEeC----CCCEE
Q psy13998         98 TWPRGIAVGPD--NSIVVADSSNHRVQVFQS-DGTF-VGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDS----NNHRV  168 (319)
Q Consensus        98 ~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~----~~~~i  168 (319)
                      +...+++...+  ..++.++..+|.|.+... +..- -.++.     +++....++++|.+ |.++++++-    .+..+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-----p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~  131 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-----PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL  131 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-----ccccccccccccccccHHHHHhhhhhhcccCCc
Confidence            34455554433  247777777888887762 2111 11121     45566778899988 456666653    34678


Q ss_pred             EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCc
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (319)
                      .+||+......+..+.....       ........+++..+.+++.++.....+.++|.........      .-.....
T Consensus       132 ~Iwdi~s~ltvPke~~~fs~-------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~------svnTk~v  198 (783)
T KOG1008|consen  132 KIWDINSLLTVPKESPLFSS-------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS------SVNTKYV  198 (783)
T ss_pred             cceecccccCCCcccccccc-------ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh------hhhhhhc
Confidence            99998864322111111100       1223334677777778899998888899998653322211      1122346


Q ss_pred             ceEEEcC-CCcEEEEeCCCCEEEEEcCC---CceEEeecccCCCCCCCCCcceEEEccC--CcEEEEeCCCCeEEeC
Q psy13998        249 RGVAVDD-QGYISVGDSGNNRIQIFTPD---GQFLRAFGCWGSGDGEFKGLEGVAVMSN--GNILVCDRENHRIQVF  319 (319)
Q Consensus       249 ~~i~~~~-~g~~~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~v~~~~~~~i~v~  319 (319)
                      .++.++| .+++|++. .++.|.+||..   .+++..+....  .........+++.|-  |.+.+.....+.|+.|
T Consensus       199 qG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~--N~~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  199 QGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNE--NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             ccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCC--CCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence            7899999 56666554 48999999932   12222221100  111224677888774  4455555666666653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.62  E-value=0.3  Score=41.60  Aligned_cols=156  Identities=15%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             CCCCcceEEcCCCc-EEEEeC--CCCeEEEeccccccccceeeEEecCceeeEEcCCC---c-EEEEcCCCCeEEEEc--
Q psy13998         55 FTWPRGIAVGPDNS-IVVADS--SNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN---S-IVVADSSNHRVQVFQ--  125 (319)
Q Consensus        55 ~~~~~~v~~~~~g~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g---~-~~~~~~~~~~i~~~~--  125 (319)
                      ...+++++|. ||+ ++++.-  .+|.+++    -|.   ..+..|.++.++.|.|-+   . -+++....+.|.+|.  
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kf----Gds---~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKF----GDS---KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCcccc----CCc---cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3678999997 565 555542  3555555    333   445577889999999853   2 566666778899997  


Q ss_pred             CCCcEEEEecCCCcc---CCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        126 SDGTFVGKFGSMGNK---AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      ........+.....+   ...-.-|.+..|+|...++..-.....-..++....    ..++...+       .....+.
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d----~srVkaDi-------~~~G~Ih  159 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCD----SSRVKADI-------KTSGLIH  159 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeC----CceEEEec-------cCCceEE
Confidence            222111111111100   111235688899997766554433332223332210    00111111       1224578


Q ss_pred             eEEEcCCC-cEEEEeCCCCeEEEEeCCC
Q psy13998        203 YIAVSNTN-RVIVSDSNNHRVQIFDVNG  229 (319)
Q Consensus       203 ~~~~~~~g-~~~v~~~~~~~i~~~~~~~  229 (319)
                      +.+|.+|| +++++....=.-++||...
T Consensus       160 CACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  160 CACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            88999998 5555555555678898543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.59  E-value=0.35  Score=40.53  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             eeeEEcCCCc-EEEEcCCCC--eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-EeCCCC--EEEEEecC
Q psy13998        101 RGIAVGPDNS-IVVADSSNH--RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNNH--RVQIFDVN  174 (319)
Q Consensus       101 ~~l~~~~~g~-~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~~~~~~--~i~~~~~~  174 (319)
                      ..-.|+|||+ ++++...++  .|+++|..++....+...   .+..   ..=.++|+|+.++ +....|  .|.+++.+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~---~gi~---~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~  314 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG---FGIN---TSPSWSPDGSKIVFTSDRGGRPQIYLYDLE  314 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC---Cccc---cCccCCCCCCEEEEEeCCCCCcceEEECCC
Confidence            3457889986 555555444  577778777765554221   1111   2446788886544 333333  46777776


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-CCe--EEEEeC
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NHR--VQIFDV  227 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~--i~~~~~  227 (319)
                      +..       ..+....      ......-.++|+|+.++.... .+.  |.++++
T Consensus       315 g~~-------~~riT~~------~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         315 GSQ-------VTRLTFS------GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             CCc-------eeEeecc------CCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            632       1221111      111113467899977665543 333  566664

>KOG2395|consensus

Probab=96.59  E-value=0.28  Score=41.13  Aligned_cols=148  Identities=14%  Similarity=0.220  Sum_probs=80.0

Q ss_pred             CCceeEEEe-CCCeEEE-EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-------EEEE
Q psy13998        145 EHPHYIAVS-NTNRVIV-SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-------VIVS  215 (319)
Q Consensus       145 ~~~~~l~~~-~~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~v~  215 (319)
                      ..|+.+-++ .+.++++ .+.....++..|++      .|+++..+.....       +.-+.+.|+..       --+.
T Consensus       333 ~~P~K~mL~~~dsnlil~~~~~~~~l~klDIE------~GKIVeEWk~~~d-------i~mv~~t~d~K~~Ql~~e~Tlv  399 (644)
T KOG2395|consen  333 IDPHKAMLHRADSNLILMDGGEQDKLYKLDIE------RGKIVEEWKFEDD-------INMVDITPDFKFAQLTSEQTLV  399 (644)
T ss_pred             cCcchhhhhccccceEeeCCCCcCcceeeecc------cceeeeEeeccCC-------cceeeccCCcchhcccccccEE
Confidence            445544443 3444444 44455677777776      3455554432211       12223333221       1234


Q ss_pred             eCCCCeEEEEeCC--CC-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCC
Q psy13998        216 DSNNHRVQIFDVN--GR-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEF  292 (319)
Q Consensus       216 ~~~~~~i~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~  292 (319)
                      +-.++.|..||+.  +. .+.......  -.....-.+++-..+|. +|+++.+|.|++||.-|..-++.-     ++-.
T Consensus       400 GLs~n~vfriDpRv~~~~kl~~~q~kq--y~~k~nFsc~aTT~sG~-IvvgS~~GdIRLYdri~~~AKTAl-----PgLG  471 (644)
T KOG2395|consen  400 GLSDNSVFRIDPRVQGKNKLAVVQSKQ--YSTKNNFSCFATTESGY-IVVGSLKGDIRLYDRIGRRAKTAL-----PGLG  471 (644)
T ss_pred             eecCCceEEecccccCcceeeeeeccc--cccccccceeeecCCce-EEEeecCCcEEeehhhhhhhhhcc-----cccC
Confidence            4567899999964  33 111110000  11112235666666765 566788999999997664433321     4445


Q ss_pred             CCcceEEEccCCcEEEEeCCC
Q psy13998        293 KGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       293 ~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ..+..+.++.||+.+++....
T Consensus       472 ~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  472 DAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             CceeeEEeeccCcEEEEeccc
Confidence            678899999999977666554

>KOG0309|consensus

Probab=96.56  E-value=0.017  Score=49.93  Aligned_cols=113  Identities=17%  Similarity=0.227  Sum_probs=69.7

Q ss_pred             CcCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceee-EEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-
Q psy13998         53 GCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVF-LAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-  125 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-  125 (319)
                      ||-..+.++.|.++.. ++++++.+-.+..    |++.+.... ...    .....++++-..--..+.+..+.|.+|| 
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~----wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHA----WDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             cCccceeccccCCCCCcceeecccccccee----eeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            4456677888887554 7888888888888    776543221 111    1345566764332333445566799999 


Q ss_pred             C-CCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCC
Q psy13998        126 S-DGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus       126 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      . .+.++..+      .++...++++++.. -...+++...++.|+.|+.+.
T Consensus       188 r~gs~pl~s~------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  188 RKGSTPLCSL------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             cCCCcceEEe------cccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            3 44455555      34555666666654 223456677899999998764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.53  E-value=0.21  Score=41.18  Aligned_cols=196  Identities=13%  Similarity=0.171  Sum_probs=89.4

Q ss_pred             EEEEcCCCCeEEEEcCC--C---cEEEEecCCC-ccCCCCCCceeEEEeCCCeEEEEeC------CCCEEEEEecCCcee
Q psy13998        111 IVVADSSNHRVQVFQSD--G---TFVGKFGSMG-NKAGQLEHPHYIAVSNTNRVIVSDS------NNHRVQIFDVNGRVF  178 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~~~--~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~~~------~~~~i~~~~~~~~~~  178 (319)
                      +++-+-...+|+++|..  -   ++.+.+.... ........|+.+..-|+|+++++.-      ..+.+.++|-++-  
T Consensus        90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf--  167 (461)
T PF05694_consen   90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF--  167 (461)
T ss_dssp             EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT---
T ss_pred             EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc--
Confidence            55556678899999932  1   3334432100 0012345677777788999999853      2345667766642  


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC--------------------CCCeEEEEeCCC-CEEEEeCC
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS--------------------NNHRVQIFDVNG-RVITSFGS  237 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------------------~~~~i~~~~~~~-~~~~~~~~  237 (319)
                          .+.......   ......-..+.+.|..+.+++..                    ..+++.+||... +.++.+..
T Consensus       168 ----~v~g~We~~---~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  168 ----EVKGRWEKD---RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             -----EEEE--SB----TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             ----cccceeccC---CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence                233333221   11122335577778777777642                    136899999654 44455421


Q ss_pred             CCCCcccccCcceEEEc--CCC-cEEEEeCCCCEEEEEcC--CCce----EEeecccCC---CCCC--------CCCcce
Q psy13998        238 EGSEEGQLKFPRGVAVD--DQG-YISVGDSGNNRIQIFTP--DGQF----LRAFGCWGS---GDGE--------FKGLEG  297 (319)
Q Consensus       238 ~~~~~~~~~~~~~i~~~--~~g-~~~v~~~~~~~i~~~~~--~g~~----~~~~~~~~~---~~~~--------~~~~~~  297 (319)
                      .    .....|..|.+.  |+. .=|+.+....+|..|-.  +|+.    +-.+.....   ....        ..-|++
T Consensus       241 g----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD  316 (461)
T PF05694_consen  241 G----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD  316 (461)
T ss_dssp             -----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred             C----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence            1    112235556664  443 35666667778887764  3432    112211000   0001        234789


Q ss_pred             EEEccCCc-EEEEeCCCCeEEeC
Q psy13998        298 VAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      |.++.|.+ +|+++...|.||.|
T Consensus       317 I~iSlDDrfLYvs~W~~GdvrqY  339 (461)
T PF05694_consen  317 ILISLDDRFLYVSNWLHGDVRQY  339 (461)
T ss_dssp             EEE-TTS-EEEEEETTTTEEEEE
T ss_pred             EEEccCCCEEEEEcccCCcEEEE
Confidence            99999988 89999999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=96.51  E-value=0.035  Score=34.46  Aligned_cols=45  Identities=16%  Similarity=0.348  Sum_probs=32.9

Q ss_pred             CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        267 NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       267 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +.|..|+..  ..+..      ......|++|+++|+++ +||++...+.|++|
T Consensus        36 ~~Vvyyd~~--~~~~v------a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy   81 (86)
T PF01731_consen   36 GNVVYYDGK--EVKVV------ASGFSFANGIAISPDKKYLYVASSLAHSIHVY   81 (86)
T ss_pred             ceEEEEeCC--EeEEe------eccCCCCceEEEcCCCCEEEEEeccCCeEEEE
Confidence            456666642  23333      34567899999999987 89999999999875

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1832|consensus

Probab=96.40  E-value=0.0035  Score=55.12  Aligned_cols=186  Identities=14%  Similarity=0.132  Sum_probs=100.7

Q ss_pred             ecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCCcEEEEcCCC-C
Q psy13998         45 IGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSN-H  119 (319)
Q Consensus        45 ~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~-~  119 (319)
                      |..|.....+-..-++++|+-+.+.++.++..|.|++    |+..++....+    -..++-+.-+.+|.+.++.+.. .
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~----~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKI----FNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEE----EEccCccccccccccccccccccccCCcceeeeeccccC
Confidence            4445444445566689999988889999999999999    88876654442    2344556666678755544322 2


Q ss_pred             -eEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        120 -RVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       120 -~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                       -..+|+..  +.....+          ..-.++.|+..-..-+.++......+||..+.      ..+.++-...  ..
T Consensus      1167 PlsaLW~~~s~~~~~Hsf----------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~------~~l~tylt~~--~~ 1228 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSF----------DEDKAVKFSNSLQFRALGTEADDALLYDVQTC------SPLQTYLTDT--VT 1228 (1516)
T ss_pred             chHHHhccccccCccccc----------cccceeehhhhHHHHHhcccccceEEEecccC------cHHHHhcCcc--hh
Confidence             34566632  2222222          22355666654332333444466788888753      2222210000  00


Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~  264 (319)
                      ....-+...|+|+..+++-++     .+||.. -+.++.|..       +..-.+=.|+|.|+-++..+
T Consensus      1229 ~~y~~n~a~FsP~D~LIlndG-----vLWDvR~~~aIh~FD~-------ft~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLILNDG-----VLWDVRIPEAIHRFDQ-------FTDYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred             hhhhccccccCCCcceEeeCc-----eeeeeccHHHHhhhhh-------heecccccccCCCceEEeec
Confidence            111125577888887776543     467743 233444421       11112235678887666655

>PLN02153 epithiospecifier protein

Probab=96.38  E-value=0.42  Score=39.01  Aligned_cols=232  Identities=15%  Similarity=0.165  Sum_probs=102.0

Q ss_pred             CCcEEEEeCCC-------CeEEEeccccccccceeeEEe---cCce----ee-EEcCCCcEEEEcCCC-----CeEEEEc
Q psy13998         66 DNSIVVADSSN-------HRVQVCFPHFDLKTNCVFLAF---TWPR----GI-AVGPDNSIVVADSSN-----HRVQVFQ  125 (319)
Q Consensus        66 ~g~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~---~~~~----~l-~~~~~g~~~~~~~~~-----~~i~~~~  125 (319)
                      ++++|+.++.+       ..+.+    ||..+.......   ..|.    +. +..-++++|+.++.+     ..+.+||
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~----yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd  107 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYV----FDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYD  107 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEE----EECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEE
Confidence            56788877642       24666    676554332211   1111    11 112256788887642     3578888


Q ss_pred             CCCcEEEEecCCCccCCCCCC-ceeEEEeCCCeEEEEeCCC-----------CEEEEEecCCceeeecCceeeeecccCC
Q psy13998        126 SDGTFVGKFGSMGNKAGQLEH-PHYIAVSNTNRVIVSDSNN-----------HRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      .....-..+............ -.+++ ..++++|+.++.+           ..+.+||+....      ... ......
T Consensus       108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~------W~~-l~~~~~  179 (341)
T PLN02153        108 TVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK------WVQ-LPDPGE  179 (341)
T ss_pred             CCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCe------Eee-CCCCCC
Confidence            554333332211000001111 12233 3357888887643           246677766431      111 111000


Q ss_pred             cCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998        194 KAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYIS  260 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~  260 (319)
                      .... ..-.+++. -++++|+.+..             .+.+.+||+....-..+...+..+... .-.+++ .-++++|
T Consensus       180 ~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r-~~~~~~-~~~~~iy  255 (341)
T PLN02153        180 NFEK-RGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR-SVFAHA-VVGKYII  255 (341)
T ss_pred             CCCC-CCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc-ceeeeE-EECCEEE
Confidence            0000 01112232 35677776432             246888997655444432111101000 011122 2346888


Q ss_pred             EEeCCC--------------CEEEEEcCCCceEEeecccCCCCCC--CCCcceEEEccCCcEEEEeCCC
Q psy13998        261 VGDSGN--------------NRIQIFTPDGQFLRAFGCWGSGDGE--FKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       261 v~~~~~--------------~~i~~~~~~g~~~~~~~~~~~~~~~--~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      +.++..              +.++.||+....-..+.........  ......+.+..++++|+.++.+
T Consensus       256 v~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~  324 (341)
T PLN02153        256 IFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKL  324 (341)
T ss_pred             EECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcC
Confidence            887741              3678888765544444211110000  0011233444455677777653

>KOG0309|consensus

Probab=96.38  E-value=0.15  Score=44.50  Aligned_cols=192  Identities=13%  Similarity=0.154  Sum_probs=116.0

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEecccccccc----ceeeEEec--CceeeEEcC--CCcEEEEcCCCCeEEEEc--
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT----NCVFLAFT--WPRGIAVGP--DNSIVVADSSNHRVQVFQ--  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~--~~~~l~~~~--~g~~~~~~~~~~~i~~~~--  125 (319)
                      ....++.++|-|+-++.++.-|-. +    .++..    ...+.++.  .+..+.+++  ...+|+.......-.+|+  
T Consensus        25 ~~~~a~si~p~grdi~lAsr~gl~-i----~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA   99 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQGLY-I----IDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA   99 (1081)
T ss_pred             CcccceeeccccchhhhhhhcCeE-E----EeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence            345678899988877776665543 3    23321    22333333  223445554  345777777777777888  


Q ss_pred             -CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        126 -SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                       .+...+..+.     .+|...+.++.+.+.. .++.+++-+..+..||++...     ..+..+..      ......-
T Consensus       100 ~ss~~aIef~l-----hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-----~p~ys~~~------w~s~asq  163 (1081)
T KOG0309|consen  100 KSSSNAIEFVL-----HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-----RPFYSTSS------WRSAASQ  163 (1081)
T ss_pred             cCCccceEEEE-----ecCccceeccccCCCCCcceeeccccccceeeeccCCC-----cceeeeec------ccccCce
Confidence             2333333332     4566777888898854 678889999999999987421     12221111      1112233


Q ss_pred             EEEcC-CCcEEEEeCCCCeEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCC
Q psy13998        204 IAVSN-TNRVIVSDSNNHRVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       204 ~~~~~-~g~~~v~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~  275 (319)
                      ++++- ++..+++ +..+.|.+||.  .+..+..+      .++...+.++++..-- ..+.+.+.+++|..|+.+
T Consensus       164 Vkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  164 VKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSL------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             eeecccCcchhhh-ccCCceEEEeccCCCcceEEe------cccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            66663 3444444 44567999995  34566666      5566677778876542 356677889999999953

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.31  E-value=0.58  Score=39.82  Aligned_cols=146  Identities=7%  Similarity=0.042  Sum_probs=78.7

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      ..+.++.++.+|.+|+. +.+| +..    |+..+.+...--.     .+..+..+.+|++|+..  +..+++.++.|..
T Consensus       165 ~~V~aLv~D~~g~lWvg-T~dG-L~~----fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT--dqGv~~~e~~G~~  236 (671)
T COG3292         165 TPVVALVFDANGRLWVG-TPDG-LSY----FDAGRGKALQLASPPLDKAINALIADVQGRLWVGT--DQGVYLQEAEGWR  236 (671)
T ss_pred             ccceeeeeeccCcEEEe-cCCc-ceE----EccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe--ccceEEEchhhcc
Confidence            46788999999998876 4444 445    6766554443222     33456666788898865  3458888877733


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      ......    ......+..+.-+.+|.+|+.. .+|..+ +....+      .+......   .........++..+.+|
T Consensus       237 ~sn~~~----~lp~~~I~ll~qD~qG~lWiGT-enGl~r-~~l~rq------~Lq~~~~~---~~l~~S~vnsL~~D~dG  301 (671)
T COG3292         237 ASNWGP----MLPSGNILLLVQDAQGELWIGT-ENGLWR-TRLPRQ------GLQIPLSK---MHLGVSTVNSLWLDTDG  301 (671)
T ss_pred             ccccCC----CCcchheeeeecccCCCEEEee-ccccee-EecCCC------Cccccccc---cCCccccccceeeccCC
Confidence            222211    1122344555666678777753 333332 222111      11111000   01123345678888899


Q ss_pred             cEEEEeCCCCeEEEEe
Q psy13998        211 RVIVSDSNNHRVQIFD  226 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~  226 (319)
                      .+++...  +.+..|.
T Consensus       302 sLWv~t~--~giv~~~  315 (671)
T COG3292         302 SLWVGTY--GGIVRYL  315 (671)
T ss_pred             CEeeecc--CceEEEe
Confidence            9888754  2344444

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.26  E-value=0.16  Score=33.05  Aligned_cols=99  Identities=10%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             eeEEEeC---CC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEE
Q psy13998        148 HYIAVSN---TN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  223 (319)
Q Consensus       148 ~~l~~~~---~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~  223 (319)
                      .+|++..   +| +-++.++.|..|++|+-+        ..+..+.       ....+..++-... ..|+.+..+|+|-
T Consensus         3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--------e~~~Ei~-------e~~~v~~L~~~~~-~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    3 TALCLFDFDGDGENELLVGSDDFEIRVFKGD--------EIVAEIT-------ETDKVTSLCSLGG-GRFAYALANGTVG   66 (111)
T ss_pred             eEEEEEecCCCCcceEEEecCCcEEEEEeCC--------cEEEEEe-------cccceEEEEEcCC-CEEEEEecCCEEE
Confidence            4555443   33 568889999999999876        3333332       1234555665554 4577777899999


Q ss_pred             EEeCCCCEEEEeCCCCCCcccccCcceEEE---cCCC-cEEEEeCCCCEEE
Q psy13998        224 IFDVNGRVITSFGSEGSEEGQLKFPRGVAV---DDQG-YISVGDSGNNRIQ  270 (319)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~g-~~~v~~~~~~~i~  270 (319)
                      +|+...+..+.-        ..+.|.+++.   +.+| .-++++..+|+|-
T Consensus        67 vY~~~~RlWRiK--------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQRLWRIK--------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcceeeeec--------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            998754433322        1223555553   3344 3678888888774

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.13  E-value=0.51  Score=37.47  Aligned_cols=192  Identities=11%  Similarity=0.000  Sum_probs=88.1

Q ss_pred             eeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee
Q psy13998        101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS  180 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~  180 (319)
                      ..+....++..++++. .+.|+.=...|+.-..+.     ......+..+...++|+++++........-|+....    
T Consensus       107 ~~i~~l~~~~~~l~~~-~G~iy~T~DgG~tW~~~~-----~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~----  176 (302)
T PF14870_consen  107 FGITALGDGSAELAGD-RGAIYRTTDGGKTWQAVV-----SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT----  176 (302)
T ss_dssp             EEEEEEETTEEEEEET-T--EEEESSTTSSEEEEE------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S----
T ss_pred             eEEEEcCCCcEEEEcC-CCcEEEeCCCCCCeeEcc-----cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc----
Confidence            4444444445554443 345554444443222221     112244567777888987777766555566665421    


Q ss_pred             cCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCC-cccccCcceEEEcCCCcE
Q psy13998        181 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSE-EGQLKFPRGVAVDDQGYI  259 (319)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~~  259 (319)
                        ......      .........|.+.+++.++++. ..+.|+.=+.. .....+...... .........+++.+++.+
T Consensus       177 --~w~~~~------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~-~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~  246 (302)
T PF14870_consen  177 --TWQPHN------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP-DDGETWSEPIIPIKTNGYGILDLAYRPPNEI  246 (302)
T ss_dssp             --S-EEEE--------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T-TEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred             --cceEEc------cCccceehhceecCCCCEEEEe-CCcEEEEccCC-CCccccccccCCcccCceeeEEEEecCCCCE
Confidence              111111      1123567889999999998877 45667666511 112222111000 112223578899988889


Q ss_pred             EEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        260 SVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       260 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      |++++. +.+.+=...|+.-+.....   .........|.|.++.+-++.+. +|.|.
T Consensus       247 wa~gg~-G~l~~S~DgGktW~~~~~~---~~~~~n~~~i~f~~~~~gf~lG~-~G~ll  299 (302)
T PF14870_consen  247 WAVGGS-GTLLVSTDGGKTWQKDRVG---ENVPSNLYRIVFVNPDKGFVLGQ-DGVLL  299 (302)
T ss_dssp             EEEEST-T-EEEESSTTSS-EE-GGG---TTSSS---EEEEEETTEEEEE-S-TTEEE
T ss_pred             EEEeCC-ccEEEeCCCCccceECccc---cCCCCceEEEEEcCCCceEEECC-CcEEE
Confidence            888764 5666666666654443110   22334567788876667677664 44443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.09  E-value=0.79  Score=39.33  Aligned_cols=124  Identities=15%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             eEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEE
Q psy13998        103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQ  169 (319)
Q Consensus       103 l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~  169 (319)
                      +...++|.+++...  ..+..+|..|+.+..+..++..   ...-+.+...|+|++++....             ...|.
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~---~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Iv  227 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGY---YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIV  227 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTE---E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcc---cccccccEECCCCCEEEEEeecccccCCCCccEecCEEE
Confidence            56778898877654  7899999999988877554321   011267788899988776551             23455


Q ss_pred             EEecCCceeeecCceeeeecccC---------------------CcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEe-
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMG---------------------NKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFD-  226 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~-  226 (319)
                      .+|..|.       .+..+....                     .......+.+++.+++ ++.++++......|..+| 
T Consensus       228 evd~tG~-------vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~  300 (477)
T PF05935_consen  228 EVDPTGE-------VVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY  300 (477)
T ss_dssp             EE-TTS--------EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-
T ss_pred             EECCCCC-------EEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC
Confidence            5554443       222211000                     0122234678899988 678888888888999999 


Q ss_pred             CCCCEEEEeCCC
Q psy13998        227 VNGRVITSFGSE  238 (319)
Q Consensus       227 ~~~~~~~~~~~~  238 (319)
                      .+++....++..
T Consensus       301 ~t~~i~Wilg~~  312 (477)
T PF05935_consen  301 RTGKIKWILGPP  312 (477)
T ss_dssp             TTS-EEEEES-S
T ss_pred             CCCcEEEEeCCC
Confidence            677777777543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.08  E-value=0.86  Score=39.66  Aligned_cols=198  Identities=18%  Similarity=0.192  Sum_probs=102.8

Q ss_pred             CCcEEEEeCCCCeEEEeccccccccceeeEEecC--c-------------eeeEEcCCCcEEEEcCCCCeEEEEc-CCCc
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW--P-------------RGIAVGPDNSIVVADSSNHRVQVFQ-SDGT  129 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~-------------~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~  129 (319)
                      +|.+|++. .++.|+-    +|..+++.+-++..  +             .++++. ++++|+ +..++.++.+| .+|+
T Consensus        69 ~g~vyv~s-~~g~v~A----lDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v-~t~dg~l~ALDa~TGk  141 (527)
T TIGR03075        69 DGVMYVTT-SYSRVYA----LDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFF-GTLDARLVALDAKTGK  141 (527)
T ss_pred             CCEEEEEC-CCCcEEE----EECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEE-EcCCCEEEEEECCCCC
Confidence            56666654 4567777    78777665554321  1             122332 345555 45678999999 6899


Q ss_pred             EEEEecCCCccCCCCCCce-eEEEeCCCeEEEEeC-----CCCEEEEEecCCceeeecCceeeeecccCCc---------
Q psy13998        130 FVGKFGSMGNKAGQLEHPH-YIAVSNTNRVIVSDS-----NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK---------  194 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~-~l~~~~~g~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------  194 (319)
                      .+...........  ..+. .-.+. ++.+|+...     .++.|..+|.++      |+.+.++......         
T Consensus       142 ~~W~~~~~~~~~~--~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~T------G~~lW~~~~~p~~~~~~~~~~~  212 (527)
T TIGR03075       142 VVWSKKNGDYKAG--YTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKT------GKLVWRRYTVPGDMGYLDKADK  212 (527)
T ss_pred             EEeeccccccccc--ccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCC------CceeEeccCcCCCccccccccc
Confidence            9887643211100  0011 11111 466666533     257888888763      2333332211100         


Q ss_pred             -----C------------CCCCCceeEEEcCCCc-EEEEeCC---------------CCeEEEEeC-CCCEEEEeCCCCC
Q psy13998        195 -----A------------GQLEHPHYIAVSNTNR-VIVSDSN---------------NHRVQIFDV-NGRVITSFGSEGS  240 (319)
Q Consensus       195 -----~------------~~~~~~~~~~~~~~g~-~~v~~~~---------------~~~i~~~~~-~~~~~~~~~~~~~  240 (319)
                           .            ..-..=..+++|++.. +|+....               ...|.-.|. +|+.+..+.....
T Consensus       213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~  292 (527)
T TIGR03075       213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPH  292 (527)
T ss_pred             ccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCC
Confidence                 0            0000002367887554 4444321               125677775 5777766643322


Q ss_pred             Ccccc---cCcceEEEcCCCc---EEEEeCCCCEEEEEcC-CCceE
Q psy13998        241 EEGQL---KFPRGVAVDDQGY---ISVGDSGNNRIQIFTP-DGQFL  279 (319)
Q Consensus       241 ~~~~~---~~~~~i~~~~~g~---~~v~~~~~~~i~~~~~-~g~~~  279 (319)
                      ..-.+   ..|.-+.+..+|+   +++....++.++++|+ +|+.+
T Consensus       293 D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       293 DEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            11111   2233333445665   7888899999999994 68876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.39  Score=35.20  Aligned_cols=184  Identities=13%  Similarity=0.088  Sum_probs=97.9

Q ss_pred             eeeEEcCCCcEEEEcCC--CCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998        101 RGIAVGPDNSIVVADSS--NHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      +++... +|.++.+.+.  ...|++|+. +|+.+.......    ....-.++.-. .+.+|.....++.-.+||.++- 
T Consensus        49 QGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~FgEGit~~-gd~~y~LTw~egvaf~~d~~t~-  121 (262)
T COG3823          49 QGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFGEGITKL-GDYFYQLTWKEGVAFKYDADTL-  121 (262)
T ss_pred             cceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCC----ccccccceeec-cceEEEEEeccceeEEEChHHh-
Confidence            455554 4567766543  457999994 477665543220    00011223222 2456777778888888887743 


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-----CCEEEEeCCCCCCcccccCcceEE
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-----GRVITSFGSEGSEEGQLKFPRGVA  252 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~  252 (319)
                           +.+.++...       ..-.+++.+.. +++.+ .++..++.-|+.     +.......     .......+-+.
T Consensus       122 -----~~lg~~~y~-------GeGWgLt~d~~-~Lims-dGsatL~frdP~tfa~~~~v~VT~~-----g~pv~~LNELE  182 (262)
T COG3823         122 -----EELGRFSYE-------GEGWGLTSDDK-NLIMS-DGSATLQFRDPKTFAELDTVQVTDD-----GVPVSKLNELE  182 (262)
T ss_pred             -----hhhcccccC-------CcceeeecCCc-ceEee-CCceEEEecCHHHhhhcceEEEEEC-----Ceeccccccee
Confidence                 223322211       11244554432 34444 445566666653     12222221     00111223333


Q ss_pred             EcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccC------CCCCCCCCcceEEEccCC-cEEEEeC
Q psy13998        253 VDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWG------SGDGEFKGLEGVAVMSNG-NILVCDR  311 (319)
Q Consensus       253 ~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~------~~~~~~~~~~~l~~~~~g-~~~v~~~  311 (319)
                      + -+|.+|+--....+|.+.++ +|+++..+...+      ....+..-+++||+.|++ ++|+++-
T Consensus       183 ~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         183 W-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             e-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            3 25777877777788888885 577776664322      112344568999999987 6888874

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.98  E-value=0.89  Score=38.97  Aligned_cols=127  Identities=8%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             CCCCCCceeEEEeCCC----eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998        141 AGQLEHPHYIAVSNTN----RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  216 (319)
Q Consensus       141 ~~~~~~~~~l~~~~~g----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  216 (319)
                      .++++.+.+++|.|-+    -.+.+....+.|.+|.+.-.......-+........  +....-|.|..|+|...++.+-
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~--e~~pvLpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR--EPFPVLPQGCVWHPKKAILTVL  130 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc--CCcccCCCcccccCCCceEEEE
Confidence            3556788999999842    245666678899999875321111111222221111  1223457889999988776554


Q ss_pred             CCCCeEEEEe--CCCCEE-EEeCCCCCCcccccCcceEEEcCCCcEEEEe-CCCCEEEEEcCCC
Q psy13998        217 SNNHRVQIFD--VNGRVI-TSFGSEGSEEGQLKFPRGVAVDDQGYISVGD-SGNNRIQIFTPDG  276 (319)
Q Consensus       217 ~~~~~i~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~-~~~~~i~~~~~~g  276 (319)
                      .....=..++  .++..+ ..+       .....+.+.+|.+||+.+|.+ +..=.-++||..-
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi-------~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADI-------KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEec-------cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            4333323333  233333 223       122357889999999654444 4333557788543

>KOG1645|consensus

Probab=95.96  E-value=0.067  Score=42.88  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             cccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCc-eEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEe
Q psy13998        242 EGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQ-FLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQV  318 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v  318 (319)
                      +.+...+.+++++|..+ ++..++.++.|.++|.... .+..+       .....+|+++|+-|.. ++.+|..+|.|.|
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-------~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-------IAYNQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-------eccCCceeeeeccCCcceeEEeccCceEEE
Confidence            34455688999999876 7888899999999995443 33333       2337899999998765 8888889999987


Q ss_pred             C
Q psy13998        319 F  319 (319)
Q Consensus       319 ~  319 (319)
                      |
T Consensus       263 y  263 (463)
T KOG1645|consen  263 Y  263 (463)
T ss_pred             E
Confidence            6

>smart00320 WD40 WD40 repeats

Probab=95.94  E-value=0.039  Score=27.37  Aligned_cols=30  Identities=17%  Similarity=0.207  Sum_probs=25.2

Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      +...+.++.+.+++.++++++.++.+++|+
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            334578899999888999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.93  E-value=0.64  Score=36.92  Aligned_cols=229  Identities=9%  Similarity=-0.016  Sum_probs=97.9

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----e-----cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----F-----TWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      ..+.+|.|..+.+-|+.+. .+.|..     ..+.+.....    .     .....+.+.. ...|+++. .+.|..-..
T Consensus        17 ~~l~dV~F~d~~~G~~VG~-~g~il~-----T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG~-~g~ll~T~D   88 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVGA-YGTILK-----TTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVGE-PGLLLHTTD   88 (302)
T ss_dssp             S-EEEEEESSSS-EEEEET-TTEEEE-----ESSTTSS-EE-----S-----EEEEEEEET-TEEEEEEE-TTEEEEESS
T ss_pred             CceEEEEEecCCEEEEEec-CCEEEE-----ECCCCccccccccCCCccceeeEEEEEecC-CceEEEcC-CceEEEecC
Confidence            3567788886666677665 355543     1111111111    1     1234566653 45666653 344444334


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .|+.-..+......+   ..+..+....++..++... .+.|+.-.-.|+      ......      .........+..
T Consensus        89 gG~tW~~v~l~~~lp---gs~~~i~~l~~~~~~l~~~-~G~iy~T~DgG~------tW~~~~------~~~~gs~~~~~r  152 (302)
T PF14870_consen   89 GGKTWERVPLSSKLP---GSPFGITALGDGSAELAGD-RGAIYRTTDGGK------TWQAVV------SETSGSINDITR  152 (302)
T ss_dssp             TTSS-EE----TT-S---S-EEEEEEEETTEEEEEET-T--EEEESSTTS------SEEEEE-------S----EEEEEE
T ss_pred             CCCCcEEeecCCCCC---CCeeEEEEcCCCcEEEEcC-CCcEEEeCCCCC------CeeEcc------cCCcceeEeEEE
Confidence            444333332111001   2334444444455544432 344443322221      111111      111234556677


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccC
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG  286 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~  286 (319)
                      .++|++++++...+...-|++-...-....     ......+..|.|+|++.+++.. ..+.|+.=+.. .....+....
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~-~~~~~w~~~~  225 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP-DDGETWSEPI  225 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T-TEEEEE---B
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEc-----cCccceehhceecCCCCEEEEe-CCcEEEEccCC-CCcccccccc
Confidence            789987777765555556775433222221     1223467889999999998887 45666666511 1112221100


Q ss_pred             CC-CCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998        287 SG-DGEFKGLEGVAVMSNGNILVCDRENHR  315 (319)
Q Consensus       287 ~~-~~~~~~~~~l~~~~~g~~~v~~~~~~~  315 (319)
                      .. ......+.++++.+++.++++++...-
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l  255 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNEIWAVGGSGTL  255 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred             CCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence            00 122234688899988888888776543

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=95.89  E-value=0.27  Score=42.42  Aligned_cols=76  Identities=14%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             CCCCceeEEEeC-CCeEEEEeCCCC-------------------EEEEEecCCceeeec---Cceeeeecc---------
Q psy13998        143 QLEHPHYIAVSN-TNRVIVSDSNNH-------------------RVQIFDVNGRVFQSD---GTFVGKFGS---------  190 (319)
Q Consensus       143 ~~~~~~~l~~~~-~g~~~~~~~~~~-------------------~i~~~~~~~~~~~~~---~~~~~~~~~---------  190 (319)
                      .+.+|.++.++| ++++|++.+..+                   .|..|+..+.-....   -.+....+.         
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            457889999998 678888865433                   677777654300000   001100000         


Q ss_pred             cCCcCCCCCCceeEEEcCCCcEEEEeCC
Q psy13998        191 MGNKAGQLEHPHYIAVSNTNRVIVSDSN  218 (319)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~  218 (319)
                      .......+..|-.|+++++|++|+....
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~  455 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDG  455 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCC
Confidence            0112345678889999999999887643

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=95.81  E-value=0.58  Score=35.49  Aligned_cols=149  Identities=13%  Similarity=0.318  Sum_probs=76.6

Q ss_pred             cCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEe--CCCe-E-E--EEeCCCCEEEEEecCCceee
Q psy13998        106 GPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS--NTNR-V-I--VSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       106 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~g~-~-~--~~~~~~~~i~~~~~~~~~~~  179 (319)
                      +|+...+++.-....+++||.+|+.++.+..     +....+ .+...  -.|+ + +  .++.....|.+|.++..   
T Consensus        64 ~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~-----Gk~NNV-DLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~---  134 (364)
T COG4247          64 NPDKSLVITTVKKAGLRVYDLSGKQLQSVNP-----GKYNNV-DLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPN---  134 (364)
T ss_pred             CcCcceEEEeeccCCeEEEecCCCeeeecCC-----Cccccc-ccccCcccCCeEEEEEecccccCCeEEEEEeCCC---
Confidence            3566677777777889999999999887742     111111 11111  1221 1 1  22334567887766542   


Q ss_pred             ecCceeeeeccc-CCcCCCCCCceeEEEc--CC-CcEE-EEeCCCCeEEEEeC----CC----CEEEEeCCCCCCccccc
Q psy13998        180 SDGTFVGKFGSM-GNKAGQLEHPHYIAVS--NT-NRVI-VSDSNNHRVQIFDV----NG----RVITSFGSEGSEEGQLK  246 (319)
Q Consensus       180 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-g~~~-v~~~~~~~i~~~~~----~~----~~~~~~~~~~~~~~~~~  246 (319)
                        .+.+..+... .......+.+.++++.  +. |.+| ++....|.|..|..    +|    +.++.+....       
T Consensus       135 --~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t-------  205 (364)
T COG4247         135 --PQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT-------  205 (364)
T ss_pred             --ccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCC-------
Confidence              2333332211 1112334567777775  32 5444 44455688887763    22    3445542211       


Q ss_pred             CcceEEEc-CCCcEEEEeCCCCEEEEEc
Q psy13998        247 FPRGVAVD-DQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       247 ~~~~i~~~-~~g~~~v~~~~~~~i~~~~  273 (319)
                      ...++..+ ..|.+|++. .+-.|..|.
T Consensus       206 QTEG~VaDdEtG~LYIae-EdvaiWK~~  232 (364)
T COG4247         206 QTEGMVADDETGFLYIAE-EDVAIWKYE  232 (364)
T ss_pred             cccceeeccccceEEEee-ccceeeecc
Confidence            22344444 457788775 444555555

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.78  E-value=0.82  Score=36.97  Aligned_cols=106  Identities=12%  Similarity=0.233  Sum_probs=53.2

Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeCCC-C-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEE--EEcCC
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-R-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ--IFTPD  275 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~--~~~~~  275 (319)
                      .+.+++.- +++++++.  ++.|++|+.+. + ......     ......+.++....+ .+++++. ...+.  .|+.+
T Consensus        90 ~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~-----~~~~~~i~sl~~~~~-~I~vgD~-~~sv~~~~~~~~  159 (321)
T PF03178_consen   90 PVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAF-----YDSPFYITSLSVFKN-YILVGDA-MKSVSLLRYDEE  159 (321)
T ss_dssp             -EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEE-----E-BSSSEEEEEEETT-EEEEEES-SSSEEEEEEETT
T ss_pred             cceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhhe-----ecceEEEEEEecccc-EEEEEEc-ccCEEEEEEEcc
Confidence            35566554 55655544  46888888533 3 332221     111113455555433 4555544 44454  45666


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++.+..++.    +.....+.++.+-+|++.++++..++.+.++
T Consensus       160 ~~~l~~va~----d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l  199 (321)
T PF03178_consen  160 NNKLILVAR----DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL  199 (321)
T ss_dssp             TE-EEEEEE----ESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred             CCEEEEEEe----cCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence            664555532    2234457777776555566666677777653

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3630|consensus

Probab=95.66  E-value=0.33  Score=44.70  Aligned_cols=151  Identities=13%  Similarity=-0.018  Sum_probs=83.2

Q ss_pred             eeEEEeCCCeEEEE--eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEE
Q psy13998        148 HYIAVSNTNRVIVS--DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQI  224 (319)
Q Consensus       148 ~~l~~~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~  224 (319)
                      ..+.+.+|+...++  ...+-.|..||+........-+ ...+............+.++.+.|.= ...+++..+..|.+
T Consensus       104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            44555566544333  3334468888886321110000 00000000011222334556666542 22344455666776


Q ss_pred             EeCCCC--EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        225 FDVNGR--VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       225 ~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      ......  .+..+       ......++++|+|.|.-++.+..+|++..|.+.++..+.+..+...+  ..+|.+|+|-.
T Consensus       183 ~~~~~~~~~v~s~-------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e--~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSF-------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE--NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhccc-------CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC--CcceeEEEEec
Confidence            654321  11111       11234578999999999999999999999999998888776544333  45788888876


Q ss_pred             CCcEEE
Q psy13998        303 NGNILV  308 (319)
Q Consensus       303 ~g~~~v  308 (319)
                      ...++|
T Consensus       254 t~eflv  259 (1405)
T KOG3630|consen  254 TQEFLV  259 (1405)
T ss_pred             ceeEEE
Confidence            655433

>KOG4640|consensus

Probab=95.61  E-value=0.11  Score=44.22  Aligned_cols=76  Identities=12%  Similarity=0.123  Sum_probs=57.0

Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceE
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFL  279 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~  279 (319)
                      ..-+.++|.-.+++....+|.+.+.-.+-+.+.++..++..     ...+++|.|||++++.+-.||+|.+.|. .|..+
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc-----cceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34577888888888888888888877777777777432221     1258999999999999999999999993 45444


Q ss_pred             Ee
Q psy13998        280 RA  281 (319)
Q Consensus       280 ~~  281 (319)
                      ..
T Consensus        98 ~~   99 (665)
T KOG4640|consen   98 VS   99 (665)
T ss_pred             ec
Confidence            44

>KOG4640|consensus

Probab=95.38  E-value=0.07  Score=45.36  Aligned_cols=65  Identities=9%  Similarity=0.086  Sum_probs=51.5

Q ss_pred             cceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCc-ceEEEccCCcEEEEeCCCCeEEe
Q psy13998        248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL-EGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       248 ~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      +.-+.++|.-.+++....+|.|.+...+-+.+.++      +.+...+ .+++|.|||++++.+-.||+|++
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwti------p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L   88 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTI------PIPGENVTASLCWRPDGKLLAVGFKDGTIRL   88 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEeccceeEec------cCCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence            44577888877888888888888888777777777      3233334 49999999999999999999986

>KOG1912|consensus

Probab=95.30  E-value=2  Score=38.26  Aligned_cols=229  Identities=12%  Similarity=0.107  Sum_probs=111.3

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcC----------C-Cc-EEEEcCCCCeE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGP----------D-NS-IVVADSSNHRV  121 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~----------~-g~-~~~~~~~~~~i  121 (319)
                      -.++.+++.|- ++-++. ..|.+    .|..+-+.+.    +...+..+.|.|          . -. +++++...|+|
T Consensus        18 ~~A~Dw~~~GL-iAygsh-slV~V----VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   18 RNAADWSPSGL-IAYGSH-SLVSV----VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             ccccccCccce-EEEecC-ceEEE----EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            45677777764 333332 35555    4443333332    112334444443          1 22 44555667899


Q ss_pred             EEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC---CC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        122 QVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN---TN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       122 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      .+|| ..+..+..+      ..+...+..+.|-+   +. .++++-.....+.+|+.++      |+......      .
T Consensus        92 il~d~~~~s~~~~l------~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt------G~k~Wk~~------y  153 (1062)
T KOG1912|consen   92 ILVDFVLASVINWL------SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT------GEKFWKYD------Y  153 (1062)
T ss_pred             EEEEehhhhhhhhh------cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC------Cceeeccc------c
Confidence            9999 455544444      22334456677654   22 4555566678899998763      23333321      1


Q ss_pred             CCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCC--------CCEEEEeCCCCCC-----------cccccC---------
Q psy13998        197 QLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN--------GRVITSFGSEGSE-----------EGQLKF---------  247 (319)
Q Consensus       197 ~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~--------~~~~~~~~~~~~~-----------~~~~~~---------  247 (319)
                      ......++.++| +.+.+..-+..|.+.+.+.-        |+. .++...-..           ......         
T Consensus       154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~-~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity  232 (1062)
T KOG1912|consen  154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKE-FQITSDHSDLAHLERETATGNSTTSTPASAYFITY  232 (1062)
T ss_pred             CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCcee-EEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence            112234566666 33334333334455444311        111 111111000           000111         


Q ss_pred             cceEEEcCCC-c-EEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEeC
Q psy13998        248 PRGVAVDDQG-Y-ISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF  319 (319)
Q Consensus       248 ~~~i~~~~~g-~-~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v~  319 (319)
                      ...++|+|.- + +|++-  ...+.++|.+- ..+..+.      .....+.=+.+-|+++  .+++...||++.+|
T Consensus       233 ~a~faf~p~~rn~lfi~~--prellv~dle~~~~l~vvp------ier~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  233 CAQFAFSPHWRNILFITF--PRELLVFDLEYECCLAVVP------IERGGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             HHhhhcChhhhceEEEEe--ccceEEEcchhhceeEEEE------eccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence            1235667763 3 44443  46789999542 2333331      1122233345555553  78888899998876

>KOG1912|consensus

Probab=95.16  E-value=2.2  Score=38.00  Aligned_cols=232  Identities=12%  Similarity=0.042  Sum_probs=117.3

Q ss_pred             ccccCCCccchhccc-cceee-----eecccCCCCCcCCCCcceEEcCC-----------Cc-EEEEeCCCCeEEEeccc
Q psy13998         24 IGQVGTTPRSQYLQK-RRLQF-----KIGSRGSEPGCFTWPRGIAVGPD-----------NS-IVVADSSNHRVQVCFPH   85 (319)
Q Consensus        24 i~~~~~~~~~~~l~~-~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~-----------g~-~~~~~~~~~~v~~~~~~   85 (319)
                      -.++.++|.|.+.-. ++...     +++.-...+-|...+..|.|.|.           -. +++++...|+|.+    
T Consensus        18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil----   93 (1062)
T KOG1912|consen   18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL----   93 (1062)
T ss_pred             ccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE----
Confidence            455667776654222 22221     12222233444455666666542           12 4556667889999    


Q ss_pred             cccccceeeEEec----CceeeEEcCC---C-cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-C
Q psy13998         86 FDLKTNCVFLAFT----WPRGIAVGPD---N-SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-T  155 (319)
Q Consensus        86 ~~~~~~~~~~~~~----~~~~l~~~~~---g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  155 (319)
                      ||.........+.    .+.++.|-+.   . .++++-.....+.+|+ .+|+......-      ......++.++| |
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y------s~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY------SHEILSCFRVDPFD  167 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc------CCcceeeeeeCCCC
Confidence            7776544443332    4466776643   2 4666666678999997 67777766531      223345678888 5


Q ss_pred             CeEEEEeCCCCEEEEEecCCc-eeeecCceeeeecccCC----------cCCCCCCc---------eeEEEcCCC--cEE
Q psy13998        156 NRVIVSDSNNHRVQIFDVNGR-VFQSDGTFVGKFGSMGN----------KAGQLEHP---------HYIAVSNTN--RVI  213 (319)
Q Consensus       156 g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~---------~~~~~~~~g--~~~  213 (319)
                      .+.+..-+..|.+.+.+.-+. .....|+..........          .......|         .-++++|.-  .+|
T Consensus       168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf  247 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF  247 (1062)
T ss_pred             cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence            555555555666666654331 11111221111100000          00000111         124566643  344


Q ss_pred             EEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCC--cEEEEeCCCCEEEEEc
Q psy13998        214 VSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFT  273 (319)
Q Consensus       214 v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g--~~~v~~~~~~~i~~~~  273 (319)
                      ++-  ...++++|+.- ..+..+..+      .....-+.+-|++  ..+++...+|++.+|-
T Consensus       248 i~~--prellv~dle~~~~l~vvpie------r~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  248 ITF--PRELLVFDLEYECCLAVVPIE------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             EEe--ccceEEEcchhhceeEEEEec------cCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            443  45788998753 223333111      1112234555554  5778888999998886

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.12  E-value=1.5  Score=35.97  Aligned_cols=80  Identities=8%  Similarity=0.049  Sum_probs=43.0

Q ss_pred             CeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCcc------------C
Q psy13998         77 HRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNK------------A  141 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------~  141 (319)
                      +.+.+    +++.+.....   .........++|+|+.++... ++.|++.+..+.....+...+..            +
T Consensus        23 ~~y~i----~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE   97 (353)
T PF00930_consen   23 GDYYI----YDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE   97 (353)
T ss_dssp             EEEEE----EETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred             eeEEE----EecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence            44555    6665433322   123457788999987554443 46788888544444444443310            0


Q ss_pred             CCCCCceeEEEeCCCeEEEE
Q psy13998        142 GQLEHPHYIAVSNTNRVIVS  161 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~~~~~  161 (319)
                      ..+....++-++||++.++.
T Consensus        98 Ev~~~~~~~~WSpd~~~la~  117 (353)
T PF00930_consen   98 EVFDRRSAVWWSPDSKYLAF  117 (353)
T ss_dssp             HTSSSSBSEEE-TTSSEEEE
T ss_pred             cccccccceEECCCCCEEEE
Confidence            01345578899999976654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008|consensus

Probab=95.05  E-value=0.0064  Score=51.42  Aligned_cols=161  Identities=12%  Similarity=0.165  Sum_probs=94.8

Q ss_pred             cCCCCCcCCCCcceEEcC-CCcEEEEeC----CCCeEEEeccccccccceeeE---------EecCceeeEEcCCCcEEE
Q psy13998         48 RGSEPGCFTWPRGIAVGP-DNSIVVADS----SNHRVQVCFPHFDLKTNCVFL---------AFTWPRGIAVGPDNSIVV  113 (319)
Q Consensus        48 ~~~~~~~~~~~~~v~~~~-~g~~~~~~~----~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~g~~~~  113 (319)
                      +...+++...-++++|.+ |.++++++-    .+..+.+    |+..+.-...         .+.....+++..+.++++
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I----wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvl  170 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI----WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVL  170 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccc----eecccccCCCccccccccccccCccccccccCcchhh
Confidence            344566677778899987 556666653    4567788    7775431100         223445777887778888


Q ss_pred             EcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998        114 ADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS  190 (319)
Q Consensus       114 ~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  190 (319)
                      ++.....+.++|..  ......+        ....+.++.++| .+++|. ...++.|.+||..-...    .++.....
T Consensus       171 aGm~sr~~~ifdlRqs~~~~~sv--------nTk~vqG~tVdp~~~nY~c-s~~dg~iAiwD~~rnie----npl~~i~~  237 (783)
T KOG1008|consen  171 AGMTSRSVHIFDLRQSLDSVSSV--------NTKYVQGITVDPFSPNYFC-SNSDGDIAIWDTYRNIE----NPLQIILR  237 (783)
T ss_pred             cccccchhhhhhhhhhhhhhhhh--------hhhhcccceecCCCCCcee-ccccCceeeccchhhhc----cHHHHHhh
Confidence            88888889988832  2222222        123457899999 666555 45589999999421110    11111100


Q ss_pred             cCCcCCCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeC
Q psy13998        191 MGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~  227 (319)
                      .  ..........+++.|.  |.+.+.....+.|+.|++
T Consensus       238 ~--~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  238 N--ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             C--CCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            0  0111223456788774  555555566788888885

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.88  E-value=0.15  Score=26.72  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CcEEEEeCCCC-eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        210 NRVIVSDSNNH-RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       210 g~~~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                      +++|.++.... .|.+-+.+|...+.+-     ...+..|.+|++++
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi-----~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVI-----SDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEE-----ESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEE-----ECCCCCcCEEEECC
Confidence            46899999988 8999998886654442     34577899999875

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.85  E-value=0.2  Score=26.01  Aligned_cols=40  Identities=23%  Similarity=0.249  Sum_probs=28.1

Q ss_pred             CCC-cEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEc
Q psy13998        255 DQG-YISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       255 ~~g-~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~  301 (319)
                      |++ ++|+++..++.|.++|. +++.+..+.      . ...|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~------v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP------V-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE------C-CCCCceEEeC
Confidence            344 58999999999999995 566666662      2 3457777664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=1.1  Score=32.98  Aligned_cols=184  Identities=14%  Similarity=0.139  Sum_probs=94.4

Q ss_pred             CcceEEcCCCcEEEEeC--CCCeEEEeccccccccceeeEEecCc------eeeEEcCCCcEEEEcCCCCeEEEEcC-CC
Q psy13998         58 PRGIAVGPDNSIVVADS--SNHRVQVCFPHFDLKTNCVFLAFTWP------RGIAVGPDNSIVVADSSNHRVQVFQS-DG  128 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~g~~~~~~~~~~~i~~~~~-~~  128 (319)
                      -.++.+. +|+++.+.+  +...|++    |++.+++....-.-+      .++.-. ...+|.....++.-.+||. +-
T Consensus        48 TQGL~~~-~g~i~esTG~yg~S~ir~----~~L~~gq~~~s~~l~~~~~FgEGit~~-gd~~y~LTw~egvaf~~d~~t~  121 (262)
T COG3823          48 TQGLEYL-DGHILESTGLYGFSKIRV----SDLTTGQEIFSEKLAPDTVFGEGITKL-GDYFYQLTWKEGVAFKYDADTL  121 (262)
T ss_pred             hcceeee-CCEEEEeccccccceeEE----EeccCceEEEEeecCCccccccceeec-cceEEEEEeccceeEEEChHHh
Confidence            3566665 557777765  3457889    999876665432211      122222 1246666667778888884 33


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      +.+..+.-.+       .-.+++-+  ++-++.......++.-|+.+-  ...+++.......  ..   ...+-+.+ -
T Consensus       122 ~~lg~~~y~G-------eGWgLt~d--~~~LimsdGsatL~frdP~tf--a~~~~v~VT~~g~--pv---~~LNELE~-V  184 (262)
T COG3823         122 EELGRFSYEG-------EGWGLTSD--DKNLIMSDGSATLQFRDPKTF--AELDTVQVTDDGV--PV---SKLNELEW-V  184 (262)
T ss_pred             hhhcccccCC-------cceeeecC--CcceEeeCCceEEEecCHHHh--hhcceEEEEECCe--ec---ccccceee-e
Confidence            4444443222       12555544  333444444556666565431  1111111111100  00   01111222 2


Q ss_pred             CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC------CCcccccCcceEEEcCCC-cEEEEeC
Q psy13998        209 TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG------SEEGQLKFPRGVAVDDQG-YISVGDS  264 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~g-~~~v~~~  264 (319)
                      +|.+|+--....+|.+.++ +|+.+..+...+      ....+.+-+++|+.+|++ ++|+++-
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            5666666666667888886 455555543221      112234567899999986 7888864

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.61  E-value=2.4  Score=35.69  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=36.0

Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      ....|+++|+|++++.-..++.+.+.+.+- +.+..+..     .....|..|+|..+..
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-----~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-----DSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec-----CcCCCCcEEEEECCCc
Confidence            568899999999888777888888888543 33334321     2234667777766544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.32  E-value=3.1  Score=35.76  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCc
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQ  277 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~  277 (319)
                      ++...++.++.+++....+| +..|+...  .......     ....+.+..|.-+|++++++-.+ ++ |..-++ .++
T Consensus       378 it~~~~d~~g~lWlgs~q~G-Lsrl~n~n~~avlde~a-----gl~ss~V~aived~dnsLWIGTs-~G-lvk~~pe~~~  449 (671)
T COG3292         378 ITTTLEDSRGRLWLGSMQNG-LSRLDNKNEWAVLDEDA-----GLPSSEVSAIVEDPDNSLWIGTS-GG-LVKRDPESGR  449 (671)
T ss_pred             cchhhhccCCcEEEEecccc-hhhhccCCccccccccc-----CCcccceeeeeecCCCCEEEecc-CC-eEecCccccc
Confidence            34456666778877766544 55666433  1111110     11233456777889988766543 34 333343 333


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      ....+. .+........+..+.+.++|+++++.+.
T Consensus       450 v~n~ln-~~~~~l~~s~~~~lg~~~~g~Lw~a~g~  483 (671)
T COG3292         450 VLNLLN-PGSHGLDGSRVEQLGLGPDGRLWLAAGS  483 (671)
T ss_pred             hhcccc-cccCcCCcchhhhhccCCCCceEEEecc
Confidence            333321 1111223345777889999998776543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=94.24  E-value=2.6  Score=34.55  Aligned_cols=55  Identities=11%  Similarity=0.016  Sum_probs=27.6

Q ss_pred             CCcEEEEcCCC-----------CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998        108 DNSIVVADSSN-----------HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus       108 ~g~~~~~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      ++++|+.++..           ..+..||+....-..+....  ...... ...+..-++++|+.++.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~--p~~~~~-~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS--PVGLLG-ASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC--CCcccc-eeEEEEeCCEEEEEcCcC
Confidence            57899888652           24777885444333322110  101001 111213478999987753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.11  E-value=2.2  Score=33.19  Aligned_cols=163  Identities=19%  Similarity=0.098  Sum_probs=85.9

Q ss_pred             CceeeEEcCCCcEEEEcC---CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEe--c
Q psy13998         99 WPRGIAVGPDNSIVVADS---SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD--V  173 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~--~  173 (319)
                      .+...+++++++.+++-.   ....+++....+.......      +  .....-.|++++.+|+....+.....+.  .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~------g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT------G--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc------C--CccccccccCCCCEEEEEcCCCceEEEEecC
Confidence            467789999987554433   4456776665554433321      1  1335568889999888877666555552  2


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEE--eCCCCeEEEEe----CCCCEEEEeCCC-CCCcccc
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVS--DSNNHRVQIFD----VNGRVITSFGSE-GSEEGQL  245 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~--~~~~~~i~~~~----~~~~~~~~~~~~-~~~~~~~  245 (319)
                      .+..     .. .....    ......+..+.++|||. +.+.  ....++|++-.    .++. ...+... .......
T Consensus        97 ~g~~-----~~-~~v~~----~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~-~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen   97 SGTG-----EP-VEVDW----PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV-PRRLTGPRRVAPPLL  165 (253)
T ss_pred             CCcc-----ee-EEecc----cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC-cceeccceEeccccc
Confidence            2210     11 01100    00011678899999994 3332  23456777654    2331 1111111 0011224


Q ss_pred             cCcceEEEcCCCcEEEEeCCCCE-EEE-EcCCCceEE
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNR-IQI-FTPDGQFLR  280 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~-i~~-~~~~g~~~~  280 (319)
                      ..+..++|.+++.+++.....+. +.. +..+|....
T Consensus       166 ~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~  202 (253)
T PF10647_consen  166 SDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPST  202 (253)
T ss_pred             CcceeeeecCCCEEEEEeCCCCCceeEEEEccCCccc
Confidence            46788999999888777765432 333 445554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.01  E-value=0.19  Score=27.09  Aligned_cols=33  Identities=3%  Similarity=-0.089  Sum_probs=28.7

Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEcCCCceE
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL  279 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~  279 (319)
                      .+..++++|...+++.+..+|.|.++..+++.+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence            467899999999999999999999999877654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=93.99  E-value=0.25  Score=30.74  Aligned_cols=33  Identities=21%  Similarity=0.487  Sum_probs=27.6

Q ss_pred             cccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC
Q psy13998        242 EGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP  274 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~  274 (319)
                      ...+..|++|.++|++ .+||++...+.|++|..
T Consensus        50 a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   50 ASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             eccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            3456789999999986 58899999999999974

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG2444|consensus

Probab=93.98  E-value=0.45  Score=35.38  Aligned_cols=99  Identities=11%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             CCcEEEEeCCCCeEEEEeCCC--CEEEEeCCCCCCcccccC-cceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        209 TNRVIVSDSNNHRVQIFDVNG--RVITSFGSEGSEEGQLKF-PRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      .+.-++++..++.|++|+.+.  .....+      ...... -..|....++.+..++..+++|+.++ ..++.+...+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhh------hcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence            445677788899999998762  211111      111111 23344445566888888999999999 34555555532


Q ss_pred             cCCCCCCC-CCcceEEEccCCcEEEEe--CCCCeEEeC
Q psy13998        285 WGSGDGEF-KGLEGVAVMSNGNILVCD--RENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~-~~~~~l~~~~~g~~~v~~--~~~~~i~v~  319 (319)
                            |. .....+.+...+++++..  +.+..++.|
T Consensus       143 ------h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W  174 (238)
T KOG2444|consen  143 ------HNFESGEELIVVGSDEFLKIADTSHDRVLKKW  174 (238)
T ss_pred             ------ccCCCcceeEEecCCceEEeeccccchhhhhc
Confidence                  22 233444444445555555  666666655

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.80  E-value=4.5  Score=35.83  Aligned_cols=193  Identities=12%  Similarity=0.017  Sum_probs=91.7

Q ss_pred             cCceeeEEcCCCcEEEEcC--------CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-CEE
Q psy13998         98 TWPRGIAVGPDNSIVVADS--------SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-HRV  168 (319)
Q Consensus        98 ~~~~~l~~~~~g~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-~~i  168 (319)
                      ..+...+++++|+.++...        ....+.+.+..+.. ..+. .+      .....-.|+|+|..+++.... ...
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt-~g------~~~t~PsWspDG~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVL-EG------HSLTRPSWSLDADAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeee-cC------CCCCCceECCCCCceEEEecCcceE
Confidence            4567889999997443322        22356666654443 2221 11      123556889986544333222 222


Q ss_pred             EEEecCCceeeecCceeeeecccC-CcC-CCCCCceeEEEcCCCcEEEEeCCCCeEEE---EeC-CCCEEEEeCCCCCCc
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMG-NKA-GQLEHPHYIAVSNTNRVIVSDSNNHRVQI---FDV-NGRVITSFGSEGSEE  242 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~i~~---~~~-~~~~~~~~~~~~~~~  242 (319)
                      ++.+..+     .+++ ......+ ... .....+..+.++|||..++.-. .++|++   ... .|.  ..+.......
T Consensus       422 ~v~~~~~-----~gql-~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~  492 (591)
T PRK13616        422 RVIRDPA-----TGQL-ARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVG  492 (591)
T ss_pred             EEeccCC-----CceE-EEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEee
Confidence            2222211     0111 1000000 000 1123578899999996443322 367776   332 343  2221110001


Q ss_pred             cccc-CcceEEEcCCCcEEEEeCC-CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        243 GQLK-FPRGVAVDDQGYISVGDSG-NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       243 ~~~~-~~~~i~~~~~g~~~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      .... .+.++.|..++.+++.... +..++.++.+|.....+..    ......+..|+-++ +.+|++++.
T Consensus       493 ~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~----~n~~~~v~~vaa~~-~~iyv~~~~  559 (591)
T PRK13616        493 PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPS----RNLSAPVVAVAASP-STVYVTDAR  559 (591)
T ss_pred             cccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCC----CCccCceEEEecCC-ceEEEEcCC
Confidence            1122 2577899999887765443 3457777777765443210    11233455566554 357776543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.53  E-value=0.32  Score=26.26  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEE
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI  232 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~  232 (319)
                      .+..++++|...+++.+..+|.|.+|..+++.+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence            456899999999999999999999998877643

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.50  E-value=3.4  Score=33.45  Aligned_cols=142  Identities=11%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             CCcEEEEcCCC-----CeEEEEcCCCcEE----EEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----CCEEEEEec
Q psy13998        108 DNSIVVADSSN-----HRVQVFQSDGTFV----GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----NHRVQIFDV  173 (319)
Q Consensus       108 ~g~~~~~~~~~-----~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~  173 (319)
                      ++.+|+.++.+     ..+..||.....-    ..+...   +..... .+++. -++++|+.++.     ...+.+||+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l---p~~~~~-~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~  146 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL---PFTFEN-GSACY-KDGTLYVGGGNRNGKPSNKSYLFNL  146 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC---CcCccC-ceEEE-ECCEEEEEeCcCCCccCceEEEEcC
Confidence            56788887643     3577777433221    111111   111111 22333 35789988764     245777877


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC----eEEEEeCCCCEEEEeCCCCCCcccc--cC
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH----RVQIFDVNGRVITSFGSEGSEEGQL--KF  247 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~--~~  247 (319)
                      ...      +... ....   +.... ....+...++++|+.+..++    .+.+||+....-..+..........  ..
T Consensus       147 ~~~------~W~~-~~~~---p~~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~  215 (323)
T TIGR03548       147 ETQ------EWFE-LPDF---PGEPR-VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLG  215 (323)
T ss_pred             CCC------CeeE-CCCC---CCCCC-CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccc
Confidence            643      1111 1000   10001 11122234678888876542    3578887655444442110000000  01


Q ss_pred             cceEEEcCCCcEEEEeCCC
Q psy13998        248 PRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       248 ~~~i~~~~~g~~~v~~~~~  266 (319)
                      ..++++ .++++|+.++.+
T Consensus       216 ~~~~~~-~~~~iyv~GG~~  233 (323)
T TIGR03548       216 AASIKI-NESLLLCIGGFN  233 (323)
T ss_pred             eeEEEE-CCCEEEEECCcC
Confidence            112233 356899988754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.44  E-value=2.9  Score=32.48  Aligned_cols=165  Identities=20%  Similarity=0.097  Sum_probs=85.6

Q ss_pred             CCcceEEcCCCcEEEEeC---CCCeEEEeccccccccceeeE-EecCceeeEEcCCCcEEEEcCCCCeEEEEc--CCCcE
Q psy13998         57 WPRGIAVGPDNSIVVADS---SNHRVQVCFPHFDLKTNCVFL-AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ--SDGTF  130 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~---~~~~v~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~--~~~~~  130 (319)
                      .+...+++++|+.++.-.   ....+++    +......... .-.....-.|++++.+|+....+.....+.  .++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~----~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYV----GPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEE----EcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            678899999998554433   4456666    4443222211 223455668899999998877665555552  34432


Q ss_pred             EE-EecCCCccCCCCCCceeEEEeCCCeEEEE---eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        131 VG-KFGSMGNKAGQLEHPHYIAVSNTNRVIVS---DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       131 ~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .. .+....    ....+..+.+++||..++.   ...+++|.+--+..   ..++..................+..++|
T Consensus       101 ~~~~v~~~~----~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r---~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen  101 EPVEVDWPG----LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR---DGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             eeEEecccc----cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe---CCCCCcceeccceEecccccCcceeeee
Confidence            22 221111    1116789999999954332   23346666543210   0111000000000011122345678999


Q ss_pred             cCCCcEEEEeCCCC-eEEE-EeCCCCEE
Q psy13998        207 SNTNRVIVSDSNNH-RVQI-FDVNGRVI  232 (319)
Q Consensus       207 ~~~g~~~v~~~~~~-~i~~-~~~~~~~~  232 (319)
                      .+++.+++.....+ .+.. +..+|...
T Consensus       174 ~~~~~L~V~~~~~~~~~~~~v~~dG~~~  201 (253)
T PF10647_consen  174 SDDSTLVVLGRSAGGPVVRLVSVDGGPS  201 (253)
T ss_pred             cCCCEEEEEeCCCCCceeEEEEccCCcc
Confidence            99888887766433 2333 44555433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13684 Ycf48-like protein; Provisional

Probab=93.42  E-value=3.6  Score=33.52  Aligned_cols=151  Identities=6%  Similarity=-0.038  Sum_probs=77.3

Q ss_pred             CCceeEEEeCCCeEEEEeCCCCEEEEE-ecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEE
Q psy13998        145 EHPHYIAVSNTNRVIVSDSNNHRVQIF-DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  223 (319)
Q Consensus       145 ~~~~~l~~~~~g~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~  223 (319)
                      ....++.+.+++.+++++ ..+.+..- +-.+.      +.....      ........++++.+++++++++. .+.++
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~------tW~~~~------~~~~~~l~~i~~~~~g~~~~vg~-~G~~~  238 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQT------AWTPHQ------RNSSRRLQSMGFQPDGNLWMLAR-GGQIR  238 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCC------eEEEee------CCCcccceeeeEcCCCCEEEEec-CCEEE
Confidence            345778888877665554 44555432 22211      111111      11224567788888898888765 45554


Q ss_pred             EEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        224 IFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       224 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      .-.. .|..........  ........++++.+++.+|+++. ++.|..-...|+.-......   .........+.+..
T Consensus       239 ~~s~d~G~sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G~tW~~~~~~---~~~~~~~~~~~~~~  312 (334)
T PRK13684        239 FNDPDDLESWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGGKTWEKDPVG---EEVPSNFYKIVFLD  312 (334)
T ss_pred             EccCCCCCccccccCCc--cccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCCCCCeECCcC---CCCCcceEEEEEeC
Confidence            3233 343333221110  00112356788888888877764 56665544445543333100   11112456677776


Q ss_pred             CCcEEEEeCCCCeE
Q psy13998        303 NGNILVCDRENHRI  316 (319)
Q Consensus       303 ~g~~~v~~~~~~~i  316 (319)
                      +++.|+++.. |.|
T Consensus       313 ~~~~~~~G~~-G~i  325 (334)
T PRK13684        313 PEKGFVLGQR-GVL  325 (334)
T ss_pred             CCceEEECCC-ceE
Confidence            7777776644 444

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.39  E-value=0.35  Score=25.15  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=27.7

Q ss_pred             CCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCC
Q psy13998        197 QLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGR  230 (319)
Q Consensus       197 ~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~  230 (319)
                      ....|.++++++.+ ++|.++...+.|.+.+.+|.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            34678899999864 78999999899999887764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.36  E-value=0.49  Score=24.49  Aligned_cols=37  Identities=38%  Similarity=0.631  Sum_probs=24.8

Q ss_pred             CCCc-EEEEeCCCCeEEEeccccccccceeeEEec---CceeeEE
Q psy13998         65 PDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAV  105 (319)
Q Consensus        65 ~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~  105 (319)
                      |+++ +|+++..+++|.+    +|..+......+.   .|.++++
T Consensus         1 pd~~~lyv~~~~~~~v~~----id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSV----IDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEE----EECCCCeEEEEEECCCCCceEEe
Confidence            3454 7888888999999    8876665544332   4555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1832|consensus

Probab=93.34  E-value=0.2  Score=44.84  Aligned_cols=142  Identities=11%  Similarity=0.136  Sum_probs=78.7

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC--EEEEEecCC
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNG  175 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~--~i~~~~~~~  175 (319)
                      .-++++|+.+.+.++.+...|.|++|+ .+|.....+      ..|...++.+.-+.+|...++.+...  -..+|++..
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCccccccc------cccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            347889998888899999999999999 566555444      55666666666666786666544322  355677652


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEc
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD  254 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~  254 (319)
                           .+.....+          ..-.++.|+..-..-+.+.......+||. ++..+.++-...  .+....-+...|+
T Consensus      1177 -----~~~~~Hsf----------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~--~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1177 -----TGGPRHSF----------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT--VTSSYSNNLAHFS 1239 (1516)
T ss_pred             -----ccCccccc----------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc--hhhhhhccccccC
Confidence                 11121211          22234555543333344444567788885 343333321111  1111112445677


Q ss_pred             CCCcEEEEe
Q psy13998        255 DQGYISVGD  263 (319)
Q Consensus       255 ~~g~~~v~~  263 (319)
                      |+..+++-+
T Consensus      1240 P~D~LIlnd 1248 (1516)
T KOG1832|consen 1240 PCDTLILND 1248 (1516)
T ss_pred             CCcceEeeC
Confidence            776665544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.23  E-value=6.6  Score=35.99  Aligned_cols=166  Identities=16%  Similarity=0.261  Sum_probs=82.2

Q ss_pred             EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCC--C-CCc---eeEEEeC---CCeEEEEeC---------CCCEEEEE
Q psy13998        111 IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ--L-EHP---HYIAVSN---TNRVIVSDS---------NNHRVQIF  171 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~--~-~~~---~~l~~~~---~g~~~~~~~---------~~~~i~~~  171 (319)
                      .++..+.|++++.+| .+|+.+..+...+...-+  . ..+   ..+.-.|   ++.+++...         ..+.|+-|
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            444456688999999 789988877543221000  0 000   0011111   455555432         25778889


Q ss_pred             ecCCceeeecCceeeeecccCCc------CCC---CCCc---eeEEEcCCCcEEEEeC------------------CCCe
Q psy13998        172 DVNGRVFQSDGTFVGKFGSMGNK------AGQ---LEHP---HYIAVSNTNRVIVSDS------------------NNHR  221 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~---~~~~~~~~g~~~v~~~------------------~~~~  221 (319)
                      |..+      |+.+..+......      ...   ...+   ..+++|++..+++...                  ..+.
T Consensus       342 Da~T------Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       342 DVNT------GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             ECCC------CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence            8874      3444443211000      000   0111   2356666543322211                  1245


Q ss_pred             EEEEeC-CCCEEEEeCCCCCCccc---ccCcceEEEcC-CCc---EEEEeCCCCEEEEEc-CCCceEEee
Q psy13998        222 VQIFDV-NGRVITSFGSEGSEEGQ---LKFPRGVAVDD-QGY---ISVGDSGNNRIQIFT-PDGQFLRAF  282 (319)
Q Consensus       222 i~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~i~~~~-~g~---~~v~~~~~~~i~~~~-~~g~~~~~~  282 (319)
                      |.-.|. +|+.+..+.......-.   ...|.-+.+.. +|+   .++....++.++++| .+|+.+...
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            666774 57776666432211111   11232223332 552   778888999999999 578877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=93.21  E-value=2.8  Score=31.63  Aligned_cols=159  Identities=12%  Similarity=0.077  Sum_probs=66.6

Q ss_pred             ecCceeeEEcCCCcEEEEcCCCCeEEEEc--CCCc-----EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998         97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQ--SDGT-----FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  169 (319)
Q Consensus        97 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~  169 (319)
                      ......|++.|++.+|+...  +.++...  ..+.     .-+.+.     .+....-..|.+++.|-+|.... ++.++
T Consensus        33 w~~~~~i~~~P~g~lY~I~~--~~lY~~~~~~~~~~~~~~~~~~Ig-----~g~W~~F~~i~~d~~G~LYaV~~-~G~ly  104 (229)
T PF14517_consen   33 WNNFRDIAAGPNGRLYAIRN--DGLYRGSPSSSGGNTWDSGSKQIG-----DGGWNSFKFIFFDPTGVLYAVTP-DGKLY  104 (229)
T ss_dssp             -TT-SEEEE-TTS-EEEEET--TEEEEES---STT--HHHH-EEEE------S-GGG-SEEEE-TTS-EEEEET-T-EEE
T ss_pred             ccccceEEEcCCceEEEEEC--CceEEecCCccCcccccccCcccc-----cCcccceeEEEecCCccEEEecc-cccee
Confidence            34556788999999988864  3566663  1111     111221     12122335889999999887764 67886


Q ss_pred             EEecCCceee---e-cCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCC-Ccc
Q psy13998        170 IFDVNGRVFQ---S-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGS-EEG  243 (319)
Q Consensus       170 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~-~~~  243 (319)
                      .+........   . .++.+.        .........+-++++|.||+... +++++.+. +++.--.-...... ...
T Consensus       105 R~~~~~~~~~~W~~~~~~~iG--------~~GW~~f~~vfa~~~GvLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~~  175 (229)
T PF14517_consen  105 RHPRPTNGSDNWIGGSGKKIG--------GTGWNDFDAVFAGPNGVLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGGG  175 (229)
T ss_dssp             EES---STT--HHH-HSEEEE---------SSGGGEEEEEE-TTS-EEEEET-TE-EEEE---SSTT--HHHH-EEEESS
T ss_pred             eccCCCccCcchhhccceecc--------cCCCccceEEEeCCCccEEEEcC-CCceEEeCCCCCCCCccccccceeccC
Confidence            6654321000   0 001110        01122245566778888887774 55666663 32210000000000 011


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      .......|.+.|+|.+|.+ -.++.|+...
T Consensus       176 gw~~~~~i~~~~~g~L~~V-~~~G~lyr~~  204 (229)
T PF14517_consen  176 GWDSFHFIFFSPDGNLWAV-KSNGKLYRGR  204 (229)
T ss_dssp             SGGGEEEEEE-TTS-EEEE--ETTEEEEES
T ss_pred             CcccceEEeeCCCCcEEEE-ecCCEEeccC
Confidence            2223455677777777777 4456665444

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=93.08  E-value=2.6  Score=31.83  Aligned_cols=158  Identities=13%  Similarity=0.130  Sum_probs=70.0

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEecc------ccccccceeeE-E-ecCceeeEEcCCCcEEEEcCCCCeEEEEcC-
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFP------HFDLKTNCVFL-A-FTWPRGIAVGPDNSIVVADSSNHRVQVFQS-  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~------~~~~~~~~~~~-~-~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-  126 (319)
                      .....|+++|+|++|+....  .++...+      +|. ...+.+. . ...-..|.+++.|-+|.... ++.++.+.. 
T Consensus        34 ~~~~~i~~~P~g~lY~I~~~--~lY~~~~~~~~~~~~~-~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~-~G~lyR~~~~  109 (229)
T PF14517_consen   34 NNFRDIAAGPNGRLYAIRND--GLYRGSPSSSGGNTWD-SGSKQIGDGGWNSFKFIFFDPTGVLYAVTP-DGKLYRHPRP  109 (229)
T ss_dssp             TT-SEEEE-TTS-EEEEETT--EEEEES---STT--HH-HH-EEEE-S-GGG-SEEEE-TTS-EEEEET-T-EEEEES--
T ss_pred             cccceEEEcCCceEEEEECC--ceEEecCCccCccccc-ccCcccccCcccceeEEEecCCccEEEecc-ccceeeccCC
Confidence            44567899999999988753  5555211      011 1111111 1 33446789999998887654 678877762 


Q ss_pred             -CCcEEEEecCCCcc--CCCCCCceeEEEeCCCeEEEEeCCCCEEEEE-ecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        127 -DGTFVGKFGSMGNK--AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF-DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       127 -~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                       ++..-.... .+..  .........+-+.++|.+|+... ++.+..+ .+.+.    ....+......  .........
T Consensus       110 ~~~~~~W~~~-~~~~iG~~GW~~f~~vfa~~~GvLY~i~~-dg~~~~~~~p~~~----~~~W~~~s~~v--~~~gw~~~~  181 (229)
T PF14517_consen  110 TNGSDNWIGG-SGKKIGGTGWNDFDAVFAGPNGVLYAITP-DGRLYRRYRPDGG----SDRWLSGSGLV--GGGGWDSFH  181 (229)
T ss_dssp             -STT--HHH--HSEEEE-SSGGGEEEEEE-TTS-EEEEET-TE-EEEE---SST----T--HHHH-EEE--ESSSGGGEE
T ss_pred             CccCcchhhc-cceecccCCCccceEEEeCCCccEEEEcC-CCceEEeCCCCCC----CCcccccccee--ccCCcccce
Confidence             221111000 0000  11223356777888998888874 4445444 22211    11111100000  011122355


Q ss_pred             eEEEcCCCcEEEEeCCCCeEEEEe
Q psy13998        203 YIAVSNTNRVIVSDSNNHRVQIFD  226 (319)
Q Consensus       203 ~~~~~~~g~~~v~~~~~~~i~~~~  226 (319)
                      .|.+.|+|.||.+ ..++.++...
T Consensus       182 ~i~~~~~g~L~~V-~~~G~lyr~~  204 (229)
T PF14517_consen  182 FIFFSPDGNLWAV-KSNGKLYRGR  204 (229)
T ss_dssp             EEEE-TTS-EEEE--ETTEEEEES
T ss_pred             EEeeCCCCcEEEE-ecCCEEeccC
Confidence            6778888888887 4467777665

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=92.85  E-value=0.53  Score=24.42  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=27.2

Q ss_pred             CCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCC
Q psy13998        143 QLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus       143 ~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~  175 (319)
                      ....|.++++++. +++|+++.....|...+++|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            3467789999994 57899999889999888775

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PLN02193 nitrile-specifier protein

Probab=92.84  E-value=5.7  Score=34.20  Aligned_cols=162  Identities=11%  Similarity=0.074  Sum_probs=76.8

Q ss_pred             CCcEEEEcCCC-----CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCce
Q psy13998        108 DNSIVVADSSN-----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRV  177 (319)
Q Consensus       108 ~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~  177 (319)
                      ++++|+.++.+     +.+.+||+....-..+...+..+. ...-.+++. -++++|+.++.+     ..+..||+....
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~  305 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT-PRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK  305 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC-CccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence            56788887653     468888865444333322111000 011123333 357888887653     346677766432


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                            ... ....+........ ..++. -++++|+.+..+    ..+++||+.......+...+..+........+.+
T Consensus       306 ------W~~-~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~  376 (470)
T PLN02193        306 ------WFH-CSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV  376 (470)
T ss_pred             ------EEe-CCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE
Confidence                  111 1000000100111 12222 256788776543    5689999876555544321111111111122222


Q ss_pred             cCCCcEEEEeCCC--------------CEEEEEcCCCceEEee
Q psy13998        254 DDQGYISVGDSGN--------------NRIQIFTPDGQFLRAF  282 (319)
Q Consensus       254 ~~~g~~~v~~~~~--------------~~i~~~~~~g~~~~~~  282 (319)
                        ++++|+.++..              +.+.+||+....-..+
T Consensus       377 --~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        377 --GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             --CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence              46788888743              2478888654433333

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.58  E-value=5.1  Score=32.98  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=35.0

Q ss_pred             CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-E-EEEeC---CCCEEEEEcCC-CceEEeecccCCCCCCC
Q psy13998        219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-I-SVGDS---GNNRIQIFTPD-GQFLRAFGCWGSGDGEF  292 (319)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~-~v~~~---~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  292 (319)
                      +.+|...+.+|...+.+....    .......=-|.+||. + |++-.   .+..|.-+++. ++.....        ..
T Consensus       215 d~RiW~i~~dg~~~~~v~~~~----~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--------~~  282 (386)
T PF14583_consen  215 DQRIWTINTDGSNVKKVHRRM----EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--------EM  282 (386)
T ss_dssp             S-SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--------EE
T ss_pred             ceEEEEEEcCCCcceeeecCC----CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--------eC
Confidence            457888888887766653211    111122234678874 3 22221   23356666743 3322211        11


Q ss_pred             CCcceEEEccCCcEEEEeCCCC
Q psy13998        293 KGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       293 ~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      .....+-.++||+++|.++.|.
T Consensus       283 p~~~H~~ss~Dg~L~vGDG~d~  304 (386)
T PF14583_consen  283 PWCSHFMSSPDGKLFVGDGGDA  304 (386)
T ss_dssp             -SEEEEEE-TTSSEEEEEE---
T ss_pred             CceeeeEEcCCCCEEEecCCCC
Confidence            1233445578899998887763

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=92.58  E-value=0.81  Score=23.94  Aligned_cols=41  Identities=27%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CcEEEEeCCCC-EEEEEcCCCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        257 GYISVGDSGNN-RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       257 g~~~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      +++|.++.... .|..-+.+|...+.+-     ......|.+|++++
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi-----~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVI-----SDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEE-----ESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEE-----ECCCCCcCEEEECC
Confidence            46899999988 8999998887655543     34577899999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.46  E-value=5.3  Score=32.88  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             ceEEEcCCCcEEEEeCCCC----------------EEEEEcCCCceEEeecccCC----CC--CCCCCcceEEEccCCc-
Q psy13998        249 RGVAVDDQGYISVGDSGNN----------------RIQIFTPDGQFLRAFGCWGS----GD--GEFKGLEGVAVMSNGN-  305 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~----------------~i~~~~~~g~~~~~~~~~~~----~~--~~~~~~~~l~~~~~g~-  305 (319)
                      ..+-.++||.++|.++.+.                .|++++........+.....    ..  .+... -...|+|||+ 
T Consensus       286 ~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h-Php~FSPDgk~  364 (386)
T PF14583_consen  286 SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH-PHPSFSPDGKW  364 (386)
T ss_dssp             EEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-----EE-TTSSE
T ss_pred             eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC-CCCccCCCCCE
Confidence            3456678899998877653                45566654333222221110    01  01111 3368999998 


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      ++.++...|...||
T Consensus       365 VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  365 VLFRSDMEGPPAVY  378 (386)
T ss_dssp             EEEEE-TTSS-EEE
T ss_pred             EEEECCCCCCccEE
Confidence            55555556665554

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.28  E-value=7.8  Score=34.41  Aligned_cols=194  Identities=14%  Similarity=0.049  Sum_probs=91.6

Q ss_pred             CcCCCCcceEEcCCCcEEEEeC------CCC--eEEEeccccccccce-eeEEecCceeeEEcCCCc-EEEEcCCCCeEE
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADS------SNH--RVQVCFPHFDLKTNC-VFLAFTWPRGIAVGPDNS-IVVADSSNHRVQ  122 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~------~~~--~v~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~  122 (319)
                      +....+.+.+++++|+.++.-.      .+.  .+.+    .+..... .+..-.....-.|+|+|+ +|+....+..++
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv----~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~  422 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWV----GPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVR  422 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEE----EeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEE
Confidence            3446788999999998544332      233  4444    4432111 111112345668899965 555433323333


Q ss_pred             EEcCCC-cEEEEecCCCccC--CCCCCceeEEEeCCCeEEEEeCCCCEEEE---EecCCceeeecCceeeeecccCCcCC
Q psy13998        123 VFQSDG-TFVGKFGSMGNKA--GQLEHPHYIAVSNTNRVIVSDSNNHRVQI---FDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       123 ~~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      +.+.++ ..+..+...+...  .....+..+.+++||..++.-. +++|++   ....      .|.  ..+........
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~------~G~--~~l~~~~~l~~  493 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE------DGQ--YALTNPREVGP  493 (591)
T ss_pred             EeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC------CCc--eeecccEEeec
Confidence            333221 1222221111101  1124589999999996544332 356655   2211      121  11100000011


Q ss_pred             CC-CCceeEEEcCCCcEEEEeCC-CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998        197 QL-EHPHYIAVSNTNRVIVSDSN-NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       197 ~~-~~~~~~~~~~~g~~~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~  264 (319)
                      .. ..+..+.|..++.+++.... +..++..+.+|.....+..    .........|+-++ +.+|++++
T Consensus       494 ~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~----~n~~~~v~~vaa~~-~~iyv~~~  558 (591)
T PRK13616        494 GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPS----RNLSAPVVAVAASP-STVYVTDA  558 (591)
T ss_pred             ccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCC----CCccCceEEEecCC-ceEEEEcC
Confidence            12 22466888888887765432 3457777777765433210    11122344555555 36776654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.06  E-value=5.6  Score=32.24  Aligned_cols=101  Identities=13%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             CCcEEEEeCCC-----CeEEEecccccccccee---eEE---ecCc---eeeEEcCCCcEEEEcCC-----CCeEEEEcC
Q psy13998         66 DNSIVVADSSN-----HRVQVCFPHFDLKTNCV---FLA---FTWP---RGIAVGPDNSIVVADSS-----NHRVQVFQS  126 (319)
Q Consensus        66 ~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~---~~~---~~~~---~~l~~~~~g~~~~~~~~-----~~~i~~~~~  126 (319)
                      ++++|+.++.+     ..+..    +++.+...   +..   ++.+   .+++. -++++|+.++.     ...+.+||+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~----~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~  146 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYR----ITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNL  146 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEE----EEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcC
Confidence            57788887643     35555    55544432   121   1111   22222 35788888764     246888885


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC----EEEEEecCC
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH----RVQIFDVNG  175 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~----~i~~~~~~~  175 (319)
                      ....-..+...   ... ......+...++++|+.++.++    .+.+||+..
T Consensus       147 ~~~~W~~~~~~---p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       147 ETQEWFELPDF---PGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             CCCCeeECCCC---CCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence            44332222211   000 1112233334688999887553    245777664

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=91.98  E-value=5.2  Score=34.52  Aligned_cols=108  Identities=20%  Similarity=0.305  Sum_probs=58.8

Q ss_pred             CCCCceeEEEcCC-CcEEEEeCCC----------------CeEEEEeCCCC-------EEEEe---CCCCC---------
Q psy13998        197 QLEHPHYIAVSNT-NRVIVSDSNN----------------HRVQIFDVNGR-------VITSF---GSEGS---------  240 (319)
Q Consensus       197 ~~~~~~~~~~~~~-g~~~v~~~~~----------------~~i~~~~~~~~-------~~~~~---~~~~~---------  240 (319)
                      .+..|..+++.|. +++|++...+                |+|+.|-+.+.       ....+   +....         
T Consensus       415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~  494 (616)
T COG3211         415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI  494 (616)
T ss_pred             cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence            3566788899875 4677765533                36777764321       11111   11000         


Q ss_pred             CcccccCcceEEEcCCCcEEEEeCCCCE------EEEE---cCC---CceEEeecccCCCCCCCCCcceEEEccCCc-EE
Q psy13998        241 EEGQLKFPRGVAVDDQGYISVGDSGNNR------IQIF---TPD---GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-IL  307 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~~g~~~v~~~~~~~------i~~~---~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~  307 (319)
                      ...-+..|..|+|+|.|++|++....+.      .-++   ..+   |++.+.+.     ......+.+.+|+||++ +|
T Consensus       495 ~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t-----~P~g~E~tG~~FspD~~TlF  569 (616)
T COG3211         495 NANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLT-----GPIGCEFTGPCFSPDGKTLF  569 (616)
T ss_pred             ccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeecc-----CCCcceeecceeCCCCceEE
Confidence            1123566999999999999998654321      1112   122   22222221     11223578899999998 55


Q ss_pred             EE
Q psy13998        308 VC  309 (319)
Q Consensus       308 v~  309 (319)
                      +.
T Consensus       570 V~  571 (616)
T COG3211         570 VN  571 (616)
T ss_pred             EE
Confidence            43

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.78  E-value=6.9  Score=32.74  Aligned_cols=152  Identities=7%  Similarity=-0.045  Sum_probs=76.3

Q ss_pred             eEEcCCCcEEEEcCCCCeEEEEcCCCcEE-EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeec
Q psy13998        103 IAVGPDNSIVVADSSNHRVQVFQSDGTFV-GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSD  181 (319)
Q Consensus       103 l~~~~~g~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~  181 (319)
                      +...++|.+++.+.....++.++ +|... ....     ........++.+.+++.+++++. .+.+..-+-.++...  
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d-~G~~~W~~~~-----~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~--  314 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWE-PGQPYWQPHN-----RASARRIQNMGWRADGGLWLLTR-GGGLYVSKGTGLTEE--  314 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecC-CCCcceEEec-----CCCccceeeeeEcCCCCEEEEeC-CceEEEecCCCCccc--
Confidence            44556666666554433222333 33221 1121     11224457888888998888764 455554333331000  


Q ss_pred             CceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE
Q psy13998        182 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV  261 (319)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v  261 (319)
                         ...+..... ......+.++.+.+++.+++++. .|.+++-...|+.-.......   ......+.+.|.++++.|+
T Consensus       315 ---~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~---~~~~~ly~v~f~~~~~g~~  386 (398)
T PLN00033        315 ---DFDFEEADI-KSRGFGILDVGYRSKKEAWAAGG-SGILLRSTDGGKSWKRDKGAD---NIAANLYSVKFFDDKKGFV  386 (398)
T ss_pred             ---ccceeeccc-CCCCcceEEEEEcCCCcEEEEEC-CCcEEEeCCCCcceeEccccC---CCCcceeEEEEcCCCceEE
Confidence               001110000 11112356677888888877765 566666655665543331111   1112345788877778887


Q ss_pred             EeCCCCEEEEE
Q psy13998        262 GDSGNNRIQIF  272 (319)
Q Consensus       262 ~~~~~~~i~~~  272 (319)
                      ++. +|.|..|
T Consensus       387 ~G~-~G~il~~  396 (398)
T PLN00033        387 LGN-DGVLLRY  396 (398)
T ss_pred             EeC-CcEEEEe
Confidence            764 5666655

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=91.56  E-value=0.27  Score=25.13  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=18.6

Q ss_pred             cCcceEEEcCCCcEEEEeCCCC
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNN  267 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~  267 (319)
                      ..+.+|++|++|++|+++..++
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeecC
Confidence            3578999999999999997654

SBBP stands for Seven Bladed Beta Propeller.

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=91.46  E-value=0.62  Score=23.76  Aligned_cols=22  Identities=45%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             CCcceEEEccCCcEEEEeCCCC
Q psy13998        293 KGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       293 ~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      ..+.+|+++++|++|+++..++
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeecC
Confidence            4689999999999999998765

SBBP stands for Seven Bladed Beta Propeller.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.40  E-value=6.8  Score=31.95  Aligned_cols=104  Identities=10%  Similarity=-0.025  Sum_probs=57.8

Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEE-eCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCc
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIF-DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQ  277 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~  277 (319)
                      ...++.+.+++.+++++. .|.++.- +..++......     ......+.++.+.+++++++++. .+.+++-+ ..|.
T Consensus       174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~-----~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~  246 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ-----RNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLE  246 (334)
T ss_pred             eEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee-----CCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCC
Confidence            456788888876655544 5666553 33333333331     12234567889999998888764 45554323 3444


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      .-.....+.  ......+.++++.+++.+++++..
T Consensus       247 sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G~~  279 (334)
T PRK13684        247 SWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGGGN  279 (334)
T ss_pred             ccccccCCc--cccccceeeEEEcCCCCEEEEcCC
Confidence            333221100  011234677888888887777654

>PLN02193 nitrile-specifier protein

Probab=91.39  E-value=8.7  Score=33.12  Aligned_cols=192  Identities=14%  Similarity=0.112  Sum_probs=86.6

Q ss_pred             CCcEEEEcCCC-------CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCC
Q psy13998        108 DNSIVVADSSN-------HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNG  175 (319)
Q Consensus       108 ~g~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~  175 (319)
                      ++.+|+.++.+       ..+.+||.....-......+..+.. .....-+..-++++|+.++.+     +.+.+||+..
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHL-SCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC-cccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence            45788877642       2477888554432222211111100 011111222357888887644     4577888764


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcce
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRG  250 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (319)
                      ..      ... .......+ ....-.+++. -++++|+.+..+     ..+..||+.................... ..
T Consensus       254 ~~------W~~-l~~~~~~P-~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~  323 (470)
T PLN02193        254 NE------WKL-LTPVEEGP-TPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AG  323 (470)
T ss_pred             CE------EEE-cCcCCCCC-CCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cE
Confidence            32      111 11110000 0111122333 356788877643     3577888765544443221110100111 12


Q ss_pred             EEEcCCCcEEEEeCCC----CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        251 VAVDDQGYISVGDSGN----NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       251 i~~~~~g~~~v~~~~~----~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ++. -++++|+.++.+    +.+.+||+....-..+...+..+.. ..-.+++ .-++++|+.++.+
T Consensus       324 ~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~-R~~~~~~-~~~~~iyv~GG~~  387 (470)
T PLN02193        324 LEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE-RSVFASA-AVGKHIVIFGGEI  387 (470)
T ss_pred             EEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC-cceeEEE-EECCEEEEECCcc
Confidence            222 256788877654    5689999755443333211111111 1112222 2356888888753

>PLN02153 epithiospecifier protein

Probab=91.32  E-value=7.1  Score=31.95  Aligned_cols=101  Identities=19%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             CCCcEEEEeCCC-----------CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-----------
Q psy13998        208 NTNRVIVSDSNN-----------HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-----------  265 (319)
Q Consensus       208 ~~g~~~v~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-----------  265 (319)
                      .++++|+.+..+           ..+.+||+....-..+.......... .-.+++. -++++|+.++.           
T Consensus       136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~  213 (341)
T PLN02153        136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR-GGAGFAV-VQGKIWVVYGFATSILPGGKSD  213 (341)
T ss_pred             ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC-CcceEEE-ECCeEEEEeccccccccCCccc
Confidence            356788876642           25778887655544442211000000 0012332 35678876542           


Q ss_pred             --CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        266 --NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       266 --~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                        .+.+.+||+....-..+...+..+. .....+++ .-++++|+.++.
T Consensus       214 ~~~~~v~~yd~~~~~W~~~~~~g~~P~-~r~~~~~~-~~~~~iyv~GG~  260 (341)
T PLN02153        214 YESNAVQFFDPASGKWTEVETTGAKPS-ARSVFAHA-VVGKYIIIFGGE  260 (341)
T ss_pred             eecCceEEEEcCCCcEEeccccCCCCC-CcceeeeE-EECCEEEEECcc
Confidence              2468888865443333321110011 01112222 235688888875

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.23  E-value=8.7  Score=32.80  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             CCceeEEEeC-CCeEEEE-eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-------cEEEE
Q psy13998        145 EHPHYIAVSN-TNRVIVS-DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-------RVIVS  215 (319)
Q Consensus       145 ~~~~~l~~~~-~g~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~v~  215 (319)
                      -.|..+..+. +..+++. +.....++..|++      .|+++..+......        -+.+.|..       .--++
T Consensus       467 idp~K~mlh~~dssli~~dg~~~~kLykmDIE------rGkvveeW~~~ddv--------vVqy~p~~kf~qmt~eqtlv  532 (776)
T COG5167         467 IDPEKIMLHDNDSSLIYLDGGERDKLYKMDIE------RGKVVEEWDLKDDV--------VVQYNPYFKFQQMTDEQTLV  532 (776)
T ss_pred             CChhhceeecCCcceEEecCCCcccceeeecc------cceeeeEeecCCcc--------eeecCCchhHHhcCccceEE
Confidence            3555555554 4455444 4455667777765      33555444322111        12222221       11234


Q ss_pred             eCCCCeEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCC
Q psy13998        216 DSNNHRVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFK  293 (319)
Q Consensus       216 ~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~  293 (319)
                      +-.+..|..+|+  +|..+.......  ....+.-.+..-...| ++++++..|-|++||.-|..-++.-     ++-..
T Consensus       533 GlS~~svFrIDPR~~gNKi~v~esKd--Y~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtal-----P~lG~  604 (776)
T COG5167         533 GLSDYSVFRIDPRARGNKIKVVESKD--YKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTAL-----PGLGD  604 (776)
T ss_pred             eecccceEEecccccCCceeeeeehh--ccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcC-----ccccc
Confidence            445677888886  453333221111  0011112233344444 5567778899999997665433321     33445


Q ss_pred             CcceEEEccCCcEEEEeCCC
Q psy13998        294 GLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       294 ~~~~l~~~~~g~~~v~~~~~  313 (319)
                      .+-.|.++.+|+.+++...+
T Consensus       605 aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         605 AIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ceeeeEeecCCcEEEEeecc
Confidence            68888999999966665543

>KOG2079|consensus

Probab=91.04  E-value=1.6  Score=40.28  Aligned_cols=97  Identities=15%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCC
Q psy13998        209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGS  287 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~  287 (319)
                      .+..++.++..|.+..+|.++.... +...   ......+.+++++.+|.++..+..+|.|.+||. .++.++.+.    
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~n---e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~----  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP-LHQN---ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT----  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch-hhcC---CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee----
Confidence            3445677777788888887765321 1100   223446789999999999999999999999995 557776662    


Q ss_pred             CCCCCCCcce---EEEccCCcEEEEeCCCCe
Q psy13998        288 GDGEFKGLEG---VAVMSNGNILVCDRENHR  315 (319)
Q Consensus       288 ~~~~~~~~~~---l~~~~~g~~~v~~~~~~~  315 (319)
                        .+..+..+   +.+..++..+.++...|.
T Consensus       170 --e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  170 --EHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             --ecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence              22222333   333445555666555553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=90.79  E-value=6.8  Score=30.79  Aligned_cols=57  Identities=14%  Similarity=0.240  Sum_probs=34.3

Q ss_pred             cCCCcEEEEeCCCCeEEEeccccccc-c--ceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         64 GPDNSIVVADSSNHRVQVCFPHFDLK-T--NCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        64 ~~~g~~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      ...++.++.|..+| +.+    ++.. .  .........+..+.+.++-+++++-+ ++.+.+++.
T Consensus         4 ~~~~~~L~vGt~~G-l~~----~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L   63 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYV----YDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDL   63 (275)
T ss_pred             ccCCCEEEEEECCC-EEE----EEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEc
Confidence            34566666667777 777    6662 1  12222344578888887755544433 478888883

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.28  E-value=8.7  Score=34.13  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=63.5

Q ss_pred             CCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEc--CCCcEEEEeCCCCEEEEEcC--
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD--DQGYISVGDSGNNRIQIFTP--  274 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~g~~~v~~~~~~~i~~~~~--  274 (319)
                      ..|.-+.-+.-++.-+++.....+.+||..+.....-..    -.....+.++.|.  |+|+.+++-+-.+.|.+|..  
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~----f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES----FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee----ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence            345555556667777888888899999976544221100    0112345666664  67877777677788888862  


Q ss_pred             ---C--C---ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        275 ---D--G---QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       275 ---~--g---~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                         .  +   ..++.+...   .-....+.+..|.++|.++|+.+
T Consensus       106 ~dy~~~~p~w~~i~~i~i~---~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDIS---SHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             hhhhcCCcccceeEEEEee---cCCCCCccceeEecCCeEEEEeC
Confidence               1  1   122332111   11234678899999999877654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=90.16  E-value=9.2  Score=31.33  Aligned_cols=50  Identities=18%  Similarity=0.095  Sum_probs=26.9

Q ss_pred             CCCcEEEEeCCC-----------CeEEEeccccccccceeeEEe-cCce---ee-EE-cCCCcEEEEcCCC
Q psy13998         65 PDNSIVVADSSN-----------HRVQVCFPHFDLKTNCVFLAF-TWPR---GI-AV-GPDNSIVVADSSN  118 (319)
Q Consensus        65 ~~g~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~-~~~~---~l-~~-~~~g~~~~~~~~~  118 (319)
                      -++++|+.++.+           ..+..    ||..++...... ..|.   +. +. .-++++|+.++.+
T Consensus        62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~----Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        62 IDGKLYVFGGIGKANSEGSPQVFDDVYR----YDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             ECCEEEEEeCCCCCCCCCcceecccEEE----EECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            468899988753           24666    666544332211 1121   11 12 3468899987653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.10  E-value=9.9  Score=31.63  Aligned_cols=93  Identities=15%  Similarity=0.118  Sum_probs=43.9

Q ss_pred             CCCcEEEEeCC-CCeEEEecccccccc-ceeeEEec----Cc---eeeEEcCCCcEEEEcCCC-----------CeEEEE
Q psy13998         65 PDNSIVVADSS-NHRVQVCFPHFDLKT-NCVFLAFT----WP---RGIAVGPDNSIVVADSSN-----------HRVQVF  124 (319)
Q Consensus        65 ~~g~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~~~~----~~---~~l~~~~~g~~~~~~~~~-----------~~i~~~  124 (319)
                      -++++|+.++. ...+.+    +++.. ...+..+.    .+   .+++ .-++.+|+.++..           ..+..|
T Consensus        37 ~~~~iyv~gG~~~~~~~~----~d~~~~~~~W~~l~~~p~~~r~~~~~v-~~~~~IYV~GG~~~~~~~~~~~~~~~v~~Y  111 (376)
T PRK14131         37 DNNTVYVGLGSAGTSWYK----LDLNAPSKGWTKIAAFPGGPREQAVAA-FIDGKLYVFGGIGKTNSEGSPQVFDDVYKY  111 (376)
T ss_pred             ECCEEEEEeCCCCCeEEE----EECCCCCCCeEECCcCCCCCcccceEE-EECCEEEEEcCCCCCCCCCceeEcccEEEE
Confidence            36788886553 345556    55532 11222111    11   1222 2357888887643           247788


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      |.....-..+....  ...... ...+...++++|+.++.+
T Consensus       112 D~~~n~W~~~~~~~--p~~~~~-~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        112 DPKTNSWQKLDTRS--PVGLAG-HVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             eCCCCEEEeCCCCC--CCcccc-eEEEEeeCCEEEEECCCC
Confidence            85544333332110  111011 122221468999988753

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.71  E-value=14  Score=32.87  Aligned_cols=121  Identities=12%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEe--CCCeEEEEeCCCCEEEEEecCC
Q psy13998         98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS--NTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus        98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      ..|.-+.-+.-+++.+......++.+||..+..+..-..    ......+.++.|.  |+++.+++.+-.+.|.+|....
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~----f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES----FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee----ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence            355555555567777777778899999955544221111    1223556777765  5788888888888888885421


Q ss_pred             cee---eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998        176 RVF---QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       176 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~  227 (319)
                      .-.   .+.-..+..+.....   ....+.+..+.++|.++|+.  .+.+++++.
T Consensus       106 ~dy~~~~p~w~~i~~i~i~~~---T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDISSH---TPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hhhhcCCcccceeEEEEeecC---CCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            100   111122333322111   11234567888888877765  357888884

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.60  E-value=6.1  Score=33.08  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             cEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      +-|++-+.+|.+..|.......--+      ......+.-++++|++..+.+... +.|++
T Consensus       329 kgF~~l~~~G~L~~f~st~~~~lL~------~~~~~~~~~~~~Sp~~~~Ll~e~~-gki~~  382 (733)
T COG4590         329 KGFYSLYRNGTLQSFYSTSEKLLLF------ERAYQAPQLVAMSPNQAYLLSEDQ-GKIRL  382 (733)
T ss_pred             ceEEEEcCCCceeeeecccCcceeh------hhhhcCcceeeeCcccchheeecC-CceEE
Confidence            4566666677777776433222222      122335777889998886666543 34554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.55  E-value=12  Score=31.93  Aligned_cols=144  Identities=12%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             CCcEEE-EcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCC-------eEEEEeCCCCEEEEEecCCcee
Q psy13998        108 DNSIVV-ADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-------RVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus       108 ~g~~~~-~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-------~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      +..+++ .+.....++..| .-|+.+..+.....        .-+.+.|..       ..-+.+-.+..|..+|++-.  
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--------vvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~--  547 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--------VVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR--  547 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCc--------ceeecCCchhHHhcCccceEEeecccceEEeccccc--
Confidence            344444 444556788888 67888877753311        122333321       11123445667777776531  


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                         |..+.......  ......-++......| ++++++..|.|++||.-|...++..     ++....+..|.++.+|.
T Consensus       548 ---gNKi~v~esKd--Y~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtal-----P~lG~aIk~idvta~Gk  616 (776)
T COG5167         548 ---GNKIKVVESKD--YKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTAL-----PGLGDAIKHIDVTANGK  616 (776)
T ss_pred             ---CCceeeeeehh--ccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcC-----cccccceeeeEeecCCc
Confidence               11111100000  0001111222233344 5666777899999997665444331     33445678899999998


Q ss_pred             EEEEeCCCCEEEEEc
Q psy13998        259 ISVGDSGNNRIQIFT  273 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~  273 (319)
                      .+++.+. ..+.+.+
T Consensus       617 ~ilaTCk-~yllL~d  630 (776)
T COG5167         617 HILATCK-NYLLLTD  630 (776)
T ss_pred             EEEEeec-ceEEEEe
Confidence            7666543 5677777

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=89.15  E-value=12  Score=32.47  Aligned_cols=63  Identities=13%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCC------eEEEE-----eCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEe
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNH------RVQIF-----DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGD  263 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~------~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~  263 (319)
                      .+..|-.|+|++.|++|+.....+      ..-++     ++.-..++.+..    ...-....+.+|+||++-++.+
T Consensus       498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t----~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLT----GPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             cccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeecc----CCCcceeecceeCCCCceEEEE
Confidence            355688999999999998754322      11122     111112222211    1112346889999998644443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.46  E-value=13  Score=30.89  Aligned_cols=51  Identities=18%  Similarity=0.021  Sum_probs=26.7

Q ss_pred             cCCCcEEEEeCCC-----------CeEEEeccccccccceeeEEe-cCce-----eeEEcCCCcEEEEcCCC
Q psy13998         64 GPDNSIVVADSSN-----------HRVQVCFPHFDLKTNCVFLAF-TWPR-----GIAVGPDNSIVVADSSN  118 (319)
Q Consensus        64 ~~~g~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~g~~~~~~~~~  118 (319)
                      .-++++|+.++..           ..+..    ||..++...... ..|.     ..+...++++|+.++.+
T Consensus        82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~----YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYK----YDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             EECCEEEEEcCCCCCCCCCceeEcccEEE----EeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            3467888887643           24666    666544332211 1122     11221467899987753

>KOG3630|consensus

Probab=87.87  E-value=14  Score=34.95  Aligned_cols=60  Identities=12%  Similarity=-0.027  Sum_probs=45.7

Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV  261 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v  261 (319)
                      ..++++|+|.|+.++.+..+|.+..|.+.++....+.......  ...+.+|+|-..-.++|
T Consensus       200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e--~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE--NYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC--CcceeEEEEecceeEEE
Confidence            4578999999999999999999999999998887775443322  45678888876544444

>KOG2079|consensus

Probab=87.33  E-value=5.3  Score=37.19  Aligned_cols=66  Identities=18%  Similarity=0.156  Sum_probs=45.9

Q ss_pred             CCcEEEEeCCCCeEEEeccccccccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEec
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFG  135 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~  135 (319)
                      .+..++.++..|.+..    .+..++-...     ....+.+++++.+|.++.++-.+|.|.+|| ..++.++.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~----~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLL----SDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeEEEEcCchhhhh----hhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            4455677777777776    5553321101     223568999999999999999999999999 4557776664

>KOG2444|consensus

Probab=86.16  E-value=5.8  Score=29.82  Aligned_cols=99  Identities=16%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             CCcEEEEeCCCCeEEEeccccccccceeeE-----EecCc-eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCC
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----AFTWP-RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMG  138 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~-~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~  138 (319)
                      -+.-++.++.++.|.+    |+....+...     ....+ ..+....++.+..++..++.|+.|+ .-++.+.....  
T Consensus        69 ~~~~~~vG~~dg~v~~----~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~--  142 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYV----FNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ--  142 (238)
T ss_pred             cCceEEeecccceEEE----ecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc--
Confidence            3456777888999999    5443122111     11122 2222233445777788899999999 44444443321  


Q ss_pred             ccCCCC-CCceeEEEeCCCeEEEEe--CCCCEEEEEecC
Q psy13998        139 NKAGQL-EHPHYIAVSNTNRVIVSD--SNNHRVQIFDVN  174 (319)
Q Consensus       139 ~~~~~~-~~~~~l~~~~~g~~~~~~--~~~~~i~~~~~~  174 (319)
                          |. .....+.+...++++...  +.+..++.|++.
T Consensus       143 ----h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  143 ----HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ----ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence                11 122233333334444433  555666677664

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=86.01  E-value=19  Score=30.17  Aligned_cols=199  Identities=14%  Similarity=0.121  Sum_probs=85.5

Q ss_pred             ceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE-EEEecCCC--ccCCCCCCceeEEEe-----CCC---eEEEEeCCCCEE
Q psy13998        100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTF-VGKFGSMG--NKAGQLEHPHYIAVS-----NTN---RVIVSDSNNHRV  168 (319)
Q Consensus       100 ~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~-----~~g---~~~~~~~~~~~i  168 (319)
                      +.+++.+.-| ..+.++.+|.+.++|..|.. +..-....  ........+..+.|.     .|+   -.+++++..|.+
T Consensus        89 vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v  167 (395)
T PF08596_consen   89 VTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV  167 (395)
T ss_dssp             EEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred             EeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence            3455554333 56667788999999976643 33221111  111222455666654     233   456677778999


Q ss_pred             EEEecCCceeeecCceeeeecccCCcCCCCCCceeEE-EcC-----------------CC---cEEEEeCCCCeEEEEeC
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSN-----------------TN---RVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~g---~~~v~~~~~~~i~~~~~  227 (319)
                      ..|.+.   ....+.+...+....  ..+...+..+. ++.                 .|   .-++.......++++.+
T Consensus       168 ~~fkIl---p~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  168 LTFKIL---PSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             EEEEEE---E-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             EEEEEe---cCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            988653   111222221111100  00000000000 100                 11   11233333568889884


Q ss_pred             -CCCEEEEeCCCCCCcccccCcceEEE-----cCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEE
Q psy13998        228 -NGRVITSFGSEGSEEGQLKFPRGVAV-----DDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAV  300 (319)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~  300 (319)
                       +++...+...    ...  ...++.+     ...+..+++-..+|.|++|. ++-+.+..+....  ...........+
T Consensus       243 ~~~k~~~K~~~----~~~--~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~--~~d~~~~~~ssi  314 (395)
T PF08596_consen  243 PKSKGAHKSFD----DPF--LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP--PLDSRRLSSSSI  314 (395)
T ss_dssp             T---EEEEE-S----S-E--EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----HHHHTT-EE
T ss_pred             CCCcccceeec----ccc--ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC--ccccccccccEE
Confidence             4444433311    101  1122333     22456777777899999999 5656665553221  112234566788


Q ss_pred             ccCCcEEEEeCC
Q psy13998        301 MSNGNILVCDRE  312 (319)
Q Consensus       301 ~~~g~~~v~~~~  312 (319)
                      +++|.+++-.+.
T Consensus       315 s~~Gdi~~~~gp  326 (395)
T PF08596_consen  315 SRNGDIFYWTGP  326 (395)
T ss_dssp             -TTS-EEEE-SS
T ss_pred             CCCCCEEEEeCc
Confidence            899986654443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.97  E-value=22  Score=29.88  Aligned_cols=98  Identities=8%  Similarity=0.015  Sum_probs=53.1

Q ss_pred             EEEcCCCcEEEEeCCCCeEEEEeCCCCEE-EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce----
Q psy13998        204 IAVSNTNRVIVSDSNNHRVQIFDVNGRVI-TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF----  278 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~----  278 (319)
                      +...++|.+++.+.. |.+++-...|... ....     ........++.+.++|.+++++. .+.+..-+..|+.    
T Consensus       244 v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~-----~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~  316 (398)
T PLN00033        244 VNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHN-----RASARRIQNMGWRADGGLWLLTR-GGGLYVSKGTGLTEEDF  316 (398)
T ss_pred             EEEcCCCCEEEEECC-ccEEEecCCCCcceEEec-----CCCccceeeeeEcCCCCEEEEeC-CceEEEecCCCCccccc
Confidence            455566666666553 3344333333321 2121     11223457888889999888874 4666655555542    


Q ss_pred             -EEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        279 -LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       279 -~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                       +.....    ......+.++.+.+++.+++++..
T Consensus       317 ~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~  347 (398)
T PLN00033        317 DFEEADI----KSRGFGILDVGYRSKKEAWAAGGS  347 (398)
T ss_pred             ceeeccc----CCCCcceEEEEEcCCCcEEEEECC
Confidence             222210    111234778888888888777754

>TIGR02608 delta_60_rpt delta-60 repeat domain

Probab=84.38  E-value=2.7  Score=23.54  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=23.7

Q ss_pred             cceEEEcCCCcEEEEeCC-------CCEEEEEcCCCceEEee
Q psy13998        248 PRGVAVDDQGYISVGDSG-------NNRIQIFTPDGQFLRAF  282 (319)
Q Consensus       248 ~~~i~~~~~g~~~v~~~~-------~~~i~~~~~~g~~~~~~  282 (319)
                      ..++++.|||++++++..       +..|..++++|.+=.++
T Consensus         3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttF   44 (55)
T TIGR02608         3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTF   44 (55)
T ss_pred             eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCc
Confidence            467889999999999853       22356666666554444

This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.33  E-value=24  Score=29.80  Aligned_cols=110  Identities=17%  Similarity=0.188  Sum_probs=59.3

Q ss_pred             CcceEEcCCCcEEEEe-C--CC--CeEEEeccccccccceeeE-EecCc--eeeEEcCCCc-EEEEcCC----------C
Q psy13998         58 PRGIAVGPDNSIVVAD-S--SN--HRVQVCFPHFDLKTNCVFL-AFTWP--RGIAVGPDNS-IVVADSS----------N  118 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~-~--~~--~~v~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~g~-~~~~~~~----------~  118 (319)
                      .....++|+|++++.+ +  ++  ..+++    +|+.++..+. .+..+  ..+.|.++++ +|++...          .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v----~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRV----FDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEE----EETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEE----EECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            3467899999966543 2  22  46888    8998776554 22322  3489999976 4444322          3


Q ss_pred             CeEEEEcCCCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC---CC-CEEEEEecCC
Q psy13998        119 HRVQVFQSDGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NN-HRVQIFDVNG  175 (319)
Q Consensus       119 ~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~-~~i~~~~~~~  175 (319)
                      ..|+.+.....   -...+...   ... .....+..++++++++...   .+ ..+.+.+...
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~---~~~-~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEP---DEP-FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-T---TCT-TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             cEEEEEECCCChHhCeeEEeec---CCC-cEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            34677763221   12223211   111 1135677888887755322   23 4577777664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.90  E-value=9.9  Score=28.80  Aligned_cols=82  Identities=6%  Similarity=-0.001  Sum_probs=47.4

Q ss_pred             EeCCCeEEEEeCCCCEEEEEecCCceeeecC-ceeeeeccc-CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC
Q psy13998        152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDG-TFVGKFGSM-GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  229 (319)
Q Consensus       152 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~  229 (319)
                      +...+.++++-+.+|.+++||+......... .+..-+... .........+..+.++.+|..+|+-+ ++..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456777888889999999999865432222 110000000 00002233456677888887776654 57889998775


Q ss_pred             CEEEE
Q psy13998        230 RVITS  234 (319)
Q Consensus       230 ~~~~~  234 (319)
                      ..-..
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            44333

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=83.78  E-value=24  Score=29.32  Aligned_cols=113  Identities=16%  Similarity=0.291  Sum_probs=63.1

Q ss_pred             EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCC
Q psy13998        152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGR  230 (319)
Q Consensus       152 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~  230 (319)
                      ...++++|+. ..++.+..+|.++.      +.+......+ .......|  +.. .+|++|+... ++.++.+|. +|+
T Consensus        65 ~~~dg~v~~~-~~~G~i~A~d~~~g------~~~W~~~~~~-~~~~~~~~--~~~-~~G~i~~g~~-~g~~y~ld~~~G~  132 (370)
T COG1520          65 ADGDGTVYVG-TRDGNIFALNPDTG------LVKWSYPLLG-AVAQLSGP--ILG-SDGKIYVGSW-DGKLYALDASTGT  132 (370)
T ss_pred             EeeCCeEEEe-cCCCcEEEEeCCCC------cEEecccCcC-cceeccCc--eEE-eCCeEEEecc-cceEEEEECCCCc
Confidence            4557777776 55677888887743      2222111110 01112222  222 2788777655 568999998 898


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEee
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAF  282 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~  282 (319)
                      .+.......  .   ....+-++-.++.+|+.. .++.++.++.+ |+.+...
T Consensus       133 ~~W~~~~~~--~---~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         133 LVWSRNVGG--S---PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             EEEEEecCC--C---eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEE
Confidence            887774332  0   111122333456666664 67888888854 8776664

>KOG2280|consensus

Probab=83.72  E-value=6.8  Score=34.99  Aligned_cols=56  Identities=13%  Similarity=0.274  Sum_probs=40.6

Q ss_pred             CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEe
Q psy13998        219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRA  281 (319)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~  281 (319)
                      ...|++|+..|+.+..+.      -....+.++-|+.+..+++. ..+|++++|+.-|..+..
T Consensus        63 ~~~I~If~~sG~lL~~~~------w~~~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~ie~  118 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRIL------WKHGELIGMGWSDDEELICV-QKDGTVHVYGLLGEFIES  118 (829)
T ss_pred             ceeEEEEeccccchHHHH------hcCCCeeeecccCCceEEEE-eccceEEEeecchhhhcc
Confidence            456899999998776652      12225778889887665554 578999999988877666

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=82.32  E-value=9.8  Score=37.52  Aligned_cols=103  Identities=13%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      |+....+|.-+++|..|=.  .+++++.    |+..+... ....     ....+....||++|.  ..+..+.-.+..+
T Consensus       361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~----~d~~~~~W-k~~~~~~d~~~S~Ls~qgdG~lYA--k~~~~l~nLSs~~  431 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQLRL--HDDRLYQ----FDPNTARW-KPPPDKSDTPFSSLSRQGDGKLYA--KDDDTLVNLSSGQ  431 (1774)
T ss_pred             HHHHhhccccCCCCCeEEe--ecCceee----ecccccee-cCCCCcccchhhhhcccCCCceEe--cCCCceeecCCCC
Confidence            4455677777777776654  4567777    66543322 1111     223344445666666  2233333332221


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNG  175 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~  175 (319)
                      ..          ......+.+..+.++|.. +.++.....+.++++..
T Consensus       432 ~~----------~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~  469 (1774)
T PF11725_consen  432 MS----------EAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSP  469 (1774)
T ss_pred             cc----------hhhhhhcccccccCCCceeeeecCCCcceeeeccCc
Confidence            11          112234456677788877 55555556668887763

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>KOG2377|consensus

Probab=81.38  E-value=32  Score=29.16  Aligned_cols=99  Identities=9%  Similarity=-0.008  Sum_probs=53.8

Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceE
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL  279 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~  279 (319)
                      .+.++.|++|++++++-..+..|..++..+........... ......+.+.+|...-.+-+.....-.++..++..+.+
T Consensus        68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrsl  146 (657)
T KOG2377|consen   68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSL  146 (657)
T ss_pred             ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhh
Confidence            56789999999999999999999999864322111100000 11122356777765544333322222334444444444


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCc
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      +..      +.+...++--.+.++.+
T Consensus       147 RlV------ks~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  147 RLV------KSHNLNVNWYMYCPETA  166 (657)
T ss_pred             hhh------hhcccCccEEEEccccc
Confidence            433      23344556666777766

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=81.27  E-value=27  Score=28.26  Aligned_cols=134  Identities=12%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             CeEEEEcCCC-----cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        119 HRVQVFQSDG-----TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       119 ~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      |+|.+|+...     ..+..+..    ......+.+++.. +++++++.+  +.|.+|+++...     ++.....    
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~----~~~~g~V~ai~~~-~~~lv~~~g--~~l~v~~l~~~~-----~l~~~~~----  125 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHS----TEVKGPVTAICSF-NGRLVVAVG--NKLYVYDLDNSK-----TLLKKAF----  125 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEE----EEESS-EEEEEEE-TTEEEEEET--TEEEEEEEETTS-----SEEEEEE----
T ss_pred             cEEEEEEEEcccccceEEEEEEE----EeecCcceEhhhh-CCEEEEeec--CEEEEEEccCcc-----cchhhhe----
Confidence            7899998332     12222211    0112446677655 566555543  788888876542     1222111    


Q ss_pred             cCCCCCCceeEEEcCCCcEEEEeCCCC-eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998        194 KAGQLEHPHYIAVSNTNRVIVSDSNNH-RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF  272 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~~~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~  272 (319)
                       ......+.++.... +.+++++...+ .+..|+.++..+..+...    ....++.++.+-++++.++++..++.+.++
T Consensus       126 -~~~~~~i~sl~~~~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d----~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l  199 (321)
T PF03178_consen  126 -YDSPFYITSLSVFK-NYILVGDAMKSVSLLRYDEENNKLILVARD----YQPRWVTAAEFLVDEDTIIVGDKDGNLFVL  199 (321)
T ss_dssp             -E-BSSSEEEEEEET-TEEEEEESSSSEEEEEEETTTE-EEEEEEE----SS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred             -ecceEEEEEEeccc-cEEEEEEcccCEEEEEEEccCCEEEEEEec----CCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence             00112344454442 35555555443 234567655544444211    122345666665454566666778888887


Q ss_pred             cC
Q psy13998        273 TP  274 (319)
Q Consensus       273 ~~  274 (319)
                      ..
T Consensus       200 ~~  201 (321)
T PF03178_consen  200 RY  201 (321)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.21  E-value=20  Score=25.97  Aligned_cols=30  Identities=17%  Similarity=0.208  Sum_probs=22.5

Q ss_pred             CceeEEEeCCC------eEEEEeCCCCEEEEEecCC
Q psy13998        146 HPHYIAVSNTN------RVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus       146 ~~~~l~~~~~g------~~~~~~~~~~~i~~~~~~~  175 (319)
                      .+.+++++|.|      .++++-+.++.+.+|...+
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            66788888854      5677778889999887653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2280|consensus

Probab=80.11  E-value=46  Score=30.20  Aligned_cols=73  Identities=15%  Similarity=0.289  Sum_probs=42.6

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      +..|.+|..+|....=+. +..-.|++    |+.. +....    ....+.++.|+.+..+++. ..++++.+|+..|..
T Consensus        43 ~gGpIAV~r~p~~~~~~~-~a~~~I~I----f~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLY-SARPYIRI----FNIS-GQLLGRILWKHGELIGMGWSDDEELICV-QKDGTVHVYGLLGEF  115 (829)
T ss_pred             cCCceEEEeccccccccc-ccceeEEE----Eecc-ccchHHHHhcCCCeeeecccCCceEEEE-eccceEEEeecchhh
Confidence            456666666663221110 33346777    6662 22211    1226678888877665554 568999999988876


Q ss_pred             EEEe
Q psy13998        131 VGKF  134 (319)
Q Consensus       131 ~~~~  134 (319)
                      +...
T Consensus       116 ie~~  119 (829)
T KOG2280|consen  116 IESN  119 (829)
T ss_pred             hccc
Confidence            6553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
1q7f_A	286	Brain Tumor Nhl Domain Length = 286		2e-31
1rwi_B	270	Extracellular Domain Of Mycobacterium Tuberculosis		2e-08
1rwi_B	270	Extracellular Domain Of Mycobacterium Tuberculosis		2e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
3fvz_A	329	Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Am		8e-06
3fvz_A	329	Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Am		3e-04

>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain Length = 286

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 42/305 (13%)
Query: 28  GTTPRSQYLQKRRL-QFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF 86
           GT  +SQ  ++R +   K G  G   G FT P G+AV   N I+VAD++NHR+Q+    F
Sbjct: 1   GTHMKSQIKRQRMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----F 56
Query: 87  DLKTNCVFL---------AFTWPRGIAV--GPDNSIVVADSSNHRVQVFQSDGTFVGKFG 135
           D +    F             +P  +AV     + IV   S  H++Q++   G FV KFG
Sbjct: 57  DKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG 116
Query: 136 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA 195
                A  L+HP  + V N  R+IV +    RV IFD NG V         KFG     +
Sbjct: 117 -----ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-------KFGC----S 160
Query: 196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD 255
             LE P+ + V++   + +SD+  H V++F+  G+ +   G EG       +P GV ++ 
Sbjct: 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT----NYPIGVGINS 216
Query: 256 QGYISVGDSGNN-RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
            G I + D+ NN  + IFT DGQ + A          F     VA+M +G++++  ++ +
Sbjct: 217 NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFD----VALMDDGSVVLASKD-Y 271
Query: 315 RIQVF 319
           R+ ++
Sbjct: 272 RLYIY 276

>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd Length = 270

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 26/244 (10%)
Query: 33  SQYLQKRRLQFKIGSRGSEPGCFT---WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK 89
           S+ +  R ++   GS G+    F     P+G+AV    ++ V D  N+RV       + +
Sbjct: 41  SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 99
Query: 90  TNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY 149
           T   F    +P G+AV    ++ VAD  N+RV    +           G     L  P  
Sbjct: 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-----LNDPDG 154
Query: 150 IAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209
           +AV N+  V V+D++N+RV   +      +S+   V  F         +  P  IAV   
Sbjct: 155 VAVDNSGNVYVTDTDNNRVVKLEA-----ESNNQVVLPFT-------DITAPWGIAVDEA 202
Query: 210 NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI 269
             V V++ N ++V          T     G     L  P  VAVD    + V D GN+R+
Sbjct: 203 GTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-----LNTPLAVAVDSDRTVYVADRGNDRV 257
Query: 270 QIFT 273
              T
Sbjct: 258 VKLT 261

>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd Length = 270

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQ 256
           L  P  +AV     V V+D NN  V +    N + +  F         L +P G+AVD Q
Sbjct: 66  LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-------LNYPEGLAVDTQ 118
Query: 257 GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL---EGVAVMSNGNILVCDREN 313
           G + V D GNNR+           A G        F GL   +GVAV ++GN+ V D +N
Sbjct: 119 GAVYVADRGNNRVVKL--------AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN 170
Query: 314 HRI 316
           +R+
Sbjct: 171 NRV 173

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 108/260 (41%), Gaps = 32/260 (12%)
Query: 60  GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNH 119
           G+A  PD   + + S +  V++   +  L       + +  RG+A  PD   + + S + 
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-VRGVAFSPDGQTIASASDDK 407
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
            V+++  +G  +          G       +A S  ++ I S S++  V++++ NG++ Q
Sbjct: 408 TVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ 461
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG 239
              T  G   S+            +A S   + I S S++  V++++ NG+++ +     
Sbjct: 462 ---TLTGHSSSV----------RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---- 504
Query: 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVA 299
              G     RGVA    G      S +  ++++  +GQ L+         G    + GVA
Sbjct: 505 --TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVA 556
Query: 300 VMSNGNILVCDRENHRIQVF 319
              +G  +     +  ++++
Sbjct: 557 FSPDGQTIASASSDKTVKLW 576

>pdb|3FVZ|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating Lyase (Pal) Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 35/243 (14%)
Query: 54  CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------------FTWPR 101
            F  P G+++  D +  V D + H+V    PH   K   + +             F  P 
Sbjct: 89  LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPH--SKEGPLLILGRSMQPGSDQNHFCQPT 146
Query: 102 GIAVGPDN-SIVVADS-SNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA-VSN 154
            +AV P   ++ V+D   N R+  F   G FV ++G   +    + GQ   PH +A V +
Sbjct: 147 DVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206
Query: 155 TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH-PHYIAVSNTNRVI 213
            +++ V+D  N R+Q F  + + F  +     K  S G     + + P ++   N     
Sbjct: 207 LDQLCVADRENGRIQCFKTDTKEFVRE----IKHASFGRNVFAISYIPGFLFAVNGKPYF 262
Query: 214 VSDSNNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
               +   VQ F +N   G +I  F            P  +   + G + +GD+  N + 
Sbjct: 263 ---GDQEPVQGFVMNFSSGEIIDVF---KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316
Query: 271 IFT 273
            FT
Sbjct: 317 KFT 319

>pdb|3FVZ|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating Lyase (Pal) Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-----VITSFGSEGSEEGQLKFPRGVAVD- 254
           PH +++       V+D   H+V   D + +     ++      GS++     P  VAV+ 
Sbjct: 93  PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 152
Query: 255 DQGYISVGDSG-NNRIQIFTPDGQFLRAFGCWGSGD----GEFKGLEGVAVMSNGNIL-V 308
             G + V D   N+RI  F+P G+F+  +G   SG     G+F     +A++ + + L V
Sbjct: 153 STGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV 212
Query: 309 CDRENHRIQVF 319
            DREN RIQ F
Sbjct: 213 ADRENGRIQCF 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	9e-95
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	4e-13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	7e-80
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	8e-71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-70
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	4e-64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	1e-40
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	1e-25
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-16
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-15
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	6e-55
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-41
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	4e-46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	7e-31
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	8e-27
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-18
3kya_A	496	Putative phosphatase; structural genomics, joint c	3e-15
3kya_A	496	Putative phosphatase; structural genomics, joint c	8e-14
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-04
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	4e-16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	3e-10
2p4o_A	306	Hypothetical protein; putative lactonase, structur	7e-07
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	3e-14
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	3e-11
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	2e-09
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	2e-05
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	1e-04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	3e-14
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	1e-10
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	3e-06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	5e-05
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	6e-14
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	2e-10
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-12
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	9e-12
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	1e-11
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	8e-08
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	1e-06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-10
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-07
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	7e-05
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	5e-04
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	5e-10
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	2e-07
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	2e-09
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	1e-07
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	2e-07
2qe8_A	343	Uncharacterized protein; structural genomics, join	2e-09
2qe8_A	343	Uncharacterized protein; structural genomics, join	9e-04
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	3e-09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	4e-09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	7e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	8e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-05
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	2e-08
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	1e-04
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	5e-08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	8e-06
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	1e-07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	6e-07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	8e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	6e-04
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	1e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-06
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	3e-06
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	4e-06
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	6e-06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	3e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-04
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	3e-04

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score =  281 bits (721), Expect = 9e-95
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 42/305 (13%)

Query: 28  GTTPRSQYLQKR-RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF 86
           GT  +SQ  ++R     K G  G   G FT P G+AV   N I+VAD++NHR+Q+    F
Sbjct: 1   GTHMKSQIKRQRMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----F 56

Query: 87  DLKTNCVFLA---------FTWPRGIAVGPDNS--IVVADSSNHRVQVFQSDGTFVGKFG 135
           D +    F             +P  +AV  ++   IV   S  H++Q++   G FV KFG
Sbjct: 57  DKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG 116

Query: 136 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA 195
           +       L+HP  + V N  R+IV +    RV IFD        +G  + KFG     +
Sbjct: 117 A-----TILQHPRGVTVDNKGRIIVVECKVMRVIIFD-------QNGNVLHKFGC----S 160

Query: 196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD 255
             LE P+ + V++   + +SD+  H V++F+  G+ +   G     EG   +P GV ++ 
Sbjct: 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG----EGITNYPIGVGINS 216

Query: 256 QGYISVGDSGNN-RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
            G I + D+ NN  + IFT DGQ + A          F     VA+M +G++++  + ++
Sbjct: 217 NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCF----DVALMDDGSVVLASK-DY 271

Query: 315 RIQVF 319
           R+ ++
Sbjct: 272 RLYIY 276

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 40  RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNH-RVQVCFPHFDLKTNCVF---- 94
           +   +IG  G       +P G+ +  +  I++AD+ N+  + +    F      +     
Sbjct: 195 QYLRQIGGEGI----TNYPIGVGINSNGEILIADNHNNFNLTI----FTQDGQLISALES 246

Query: 95  -LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ 125
            +       +A+  D S+V+A   ++R+ +++
Sbjct: 247 KVKHAQCFDVALMDDGSVVLASK-DYRLYIYR 277

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score =  242 bits (621), Expect = 7e-80
 Identities = 56/277 (20%), Positives = 91/277 (32%), Gaps = 29/277 (10%)

Query: 44  KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNH-RVQVCFPHFDLKTNCVFLAFTWPRG 102
           +     +       P G+AV    ++ V     + RV          T   F     P+G
Sbjct: 12  QTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQG 71

Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
           +AV    ++ V D +N  V +  +                 L +P  +AV     V V+D
Sbjct: 72  LAVDGAGTVYVTDFNNRVVTLA-AGSNNQTVLPF-----DGLNYPEGLAVDTQGAVYVAD 125

Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
             N+RV           +                 L  P  +AV N+  V V+D++N+RV
Sbjct: 126 RGNNRVVKLA-------AGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDNNRV 173

Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
              +                  +  P G+AVD+ G + V +   N++             
Sbjct: 174 VKLEAESNNQVVLPF-----TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL 228

Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              G           VAV S+  + V DR N R+   
Sbjct: 229 PFTG-----LNTPLAVAVDSDRTVYVADRGNDRVVKL 260

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score =  219 bits (561), Expect = 8e-71
 Identities = 54/237 (22%), Positives = 86/237 (36%), Gaps = 23/237 (9%)

Query: 46  GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAV 105
           G+          P+G+AV    ++ V D +N  V +     + +T   F    +P G+AV
Sbjct: 57  GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL-AAGSNNQTVLPFDGLNYPEGLAV 115

Query: 106 GPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 165
               ++ VAD  N+RV    +                 L  P  +AV N+  V V+D++N
Sbjct: 116 DTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDN 170

Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 225
           +RV   +       ++                +  P  IAV     V V++ N ++V   
Sbjct: 171 NRVVKLE-------AESNNQVVLPF-----TDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218

Query: 226 DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
                  T     G     L  P  VAVD    + V D GN+R+   T         
Sbjct: 219 LAGSTTSTVLPFTG-----LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHHH 270

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score =  157 bits (399), Expect = 2e-46
 Identities = 46/195 (23%), Positives = 67/195 (34%), Gaps = 24/195 (12%)

Query: 126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-RVQIFDVNGRVFQSDGTF 184
           S     G+             P  +AV +   V V+    + RV                
Sbjct: 5   SPTQASGQTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--------- 55

Query: 185 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ 244
               G+       L  P  +AV     V V+D NN  V +        T           
Sbjct: 56  ---TGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA-GSNNQTVLPF-----DG 106

Query: 245 LKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG 304
           L +P G+AVD QG + V D GNNR+       +        G         +GVAV ++G
Sbjct: 107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-----LNDPDGVAVDNSG 161

Query: 305 NILVCDRENHRIQVF 319
           N+ V D +N+R+   
Sbjct: 162 NVYVTDTDNNRVVKL 176

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score =  220 bits (562), Expect = 2e-70
 Identities = 55/321 (17%), Positives = 103/321 (32%), Gaps = 52/321 (16%)

Query: 42  QFKIGSRGSEPGCFTW---PRGIAVGPDNSIVVADSSNHRVQV----------------- 81
            F +      PG +       G+A+   N++V+    +H                     
Sbjct: 7   DFHVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPI 66

Query: 82  ---CFPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF--- 130
                   D     +  +     F  P G+++  D +  V D + H+V            
Sbjct: 67  EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPL 126

Query: 131 --VGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDS-NNHRVQIFDVNGRVFQSDGTFVG 186
             +G+    G+       P  +AV  +T  V VSD   N R+  F          G FV 
Sbjct: 127 LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-------PSGKFVT 179

Query: 187 KFGSMGN----KAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVIT---SFGSE 238
           ++G   +    + GQ   PH +A+  + +++ V+D  N R+Q F  + +         S 
Sbjct: 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF 239

Query: 239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGV 298
           G     + +  G      G    GD    +  +   +         +      F     +
Sbjct: 240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVM--NFSSGEIIDVFKPVRKHFDMPHDI 297

Query: 299 AVMSNGNILVCDRENHRIQVF 319
               +G + + D   + +  F
Sbjct: 298 VASEDGTVYIGDAHTNTVWKF 318

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score =  204 bits (521), Expect = 4e-64
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 25/249 (10%)

Query: 48  RGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF----------LAF 97
           + S    F  P G+++  D +  V D + H+V    PH       +             F
Sbjct: 83  QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142

Query: 98  TWPRGIAVGPD-NSIVVADS-SNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA 151
             P  +AV P   ++ V+D   N R+  F   G FV ++G   +    + GQ   PH +A
Sbjct: 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202

Query: 152 V-SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210
           +  + +++ V+D  N R+Q F  + + F        K  S G     + +      +   
Sbjct: 203 LVPHLDQLCVADRENGRIQCFKTDTKEF----VREIKHASFGRNVFAISYIPGFLFAVNG 258

Query: 211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI 269
           +    D    +  + +  +G +I  F            P  +   + G + +GD+  N +
Sbjct: 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---KHFDMPHDIVASEDGTVYIGDAHTNTV 315

Query: 270 QIFTPDGQF 278
             FT   + 
Sbjct: 316 WKFTLTEKM 324

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score =  143 bits (362), Expect = 1e-40
 Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 32/210 (15%)

Query: 43  FKIGSRGSEPGCFTWPRGIAVGPD-NSIVVADS-SNHRVQVCFPHFDLKTNCVFLA---- 96
            +    GS+   F  P  +AV P   ++ V+D   N R+      F      V       
Sbjct: 130 GRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ----FSPSGKFVTQWGEES 185

Query: 97  ---------FTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGT---FVGKFGSMGNKAGQ 143
                    F+ P  +A+ P  + + VAD  N R+Q F++D        K  S G     
Sbjct: 186 SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245

Query: 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203
           + +      +   +    D    +  + +       S G  +  F  +       + PH 
Sbjct: 246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNF------SSGEIIDVFKPVR---KHFDMPHD 296

Query: 204 IAVSNTNRVIVSDSNNHRVQIFDVNGRVIT 233
           I  S    V + D++ + V  F +  ++  
Sbjct: 297 IVASEDGTVYIGDAHTNTVWKFTLTEKMEH 326

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score =  103 bits (258), Expect = 1e-25
 Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 30/173 (17%)

Query: 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVIT 233
           +             +  +    GQ      +A+ + N +++    +H       + + + 
Sbjct: 2   HHHHHDFHVEEELDWPGVYLLPGQ---VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY 58

Query: 234 SFGS--------------------EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273
                                   + S +     P G+++D  G   V D   +++    
Sbjct: 59  QQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLD 118

Query: 274 PDGQF-----LRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCD-RENHRIQVF 319
           P  +      L      GS    F     VAV  S G + V D   N RI  F
Sbjct: 119 PHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 23/120 (19%)

Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL 279
           H     D +      +       GQ     GVA+D +  + +   G++     + D +F+
Sbjct: 1   HHHHHHDFHVEEELDWPGVYLLPGQ---VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV 57

Query: 280 RAFGCWG--------------------SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
                 G                    SG   F    G+++ ++GN  V D   H++   
Sbjct: 58  YQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKL 117

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 11/99 (11%)

Query: 42  QFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----- 96
           + K  S G      ++  G     +      D    +  V     +  +  +        
Sbjct: 233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV----MNFSSGEIIDVFKPVR 288

Query: 97  --FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK 133
             F  P  I    D ++ + D+  + V  F        +
Sbjct: 289 KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKMEHR 327

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score =  182 bits (464), Expect = 6e-56
 Identities = 25/272 (9%), Positives = 76/272 (27%), Gaps = 35/272 (12%)

Query: 52  PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGP 107
               T P GI V     + +     + +       +L                  + +  
Sbjct: 11  TNQDTGPYGITVSDKGKVWITQHKANMISC----INLDGKITEYPLPTPDAKVMCLTISS 66

Query: 108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167
           D  +   +++ +++      G                  P+ I       +  ++ N +R
Sbjct: 67  DGEVWFTENAANKIGRITKKGIIKEYTLP-----NPDSAPYGITEGPNGDIWFTEMNGNR 121

Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227
           +     +G++ + +               +  +P +I + + N +  +++ N+ +     
Sbjct: 122 IGRITDDGKIREYELP------------NKGSYPSFITLGSDNALWFTENQNNAIGRITE 169

Query: 228 NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS 287
           +G +                P G+   +   +   +   N+I   T  G+          
Sbjct: 170 SGDITEFKIP-----TPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEF-----K 219

Query: 288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
                     +   +  ++   +   ++I   
Sbjct: 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRL 251

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score =  160 bits (406), Expect = 2e-47
 Identities = 28/269 (10%), Positives = 78/269 (28%), Gaps = 30/269 (11%)

Query: 52  PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
           P        + +  D  +   +++ +++        +K   +    + P GI  GP+  I
Sbjct: 53  PTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDI 112

Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
              + + +R+     DG              +  +P +I + + N +  +++ N+ +   
Sbjct: 113 WFTEMNGNRIGRITDDGKIREYELP-----NKGSYPSFITLGSDNALWFTENQNNAIGRI 167

Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
             +G + +                     P  I   N + +   +   +++     +G +
Sbjct: 168 TESGDITEFKIP------------TPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEI 215

Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
                           P  +       +   + G N+I   T +               +
Sbjct: 216 TEFKIP-----TPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIE-----EYPIQIK 265

Query: 292 FKGLEGVAVMSNGNILVCDRENH--RIQV 318
                G+       I      +   ++ +
Sbjct: 266 SAEPHGICF-DGETIWFAMECDKIGKLTL 293

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 13/128 (10%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 52  PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
           P   + P GI  G D+++   +   +++       ++    +      P  I  G    +
Sbjct: 179 PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDL 238

Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
              +   +++    S+               +   PH I       +  +   + ++   
Sbjct: 239 WFTEWGANKIGRLTSNNIIEEYPIQ-----IKSAEPHGICFDGET-IWFAMECD-KIGKL 291

Query: 172 DVNGRVFQ 179
            +     +
Sbjct: 292 TLIKDNME 299

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score =  180 bits (458), Expect = 6e-55
 Identities = 32/268 (11%), Positives = 74/268 (27%), Gaps = 27/268 (10%)

Query: 52  PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
               + P GI    D  +       +++        +K   V         + V     I
Sbjct: 16  SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDI 75

Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
              ++  +++      G F                P+ I       +  +  N  R+   
Sbjct: 76  WFTENGANKIGKLSKKGGFTEYPLP-----QPDSGPYGITEGLNGDIWFTQLNGDRIGKL 130

Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
             +G +++ D    G +            P +I + + N +  +++ N+ +      G++
Sbjct: 131 TADGTIYEYDLPNKGSY------------PAFITLGSDNALWFTENQNNSIGRITNTGKL 178

Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
                           P G+   + G +   +   N+I   T  G+              
Sbjct: 179 EEYPLP-----TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEY-----DIPTP 228

Query: 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319
                 +    N  I   +   ++I   
Sbjct: 229 NARPHAITAGKNSEIWFTEWGANQIGRI 256

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score =  163 bits (414), Expect = 2e-48
 Identities = 32/268 (11%), Positives = 73/268 (27%), Gaps = 29/268 (10%)

Query: 52  PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
           P        + V     I   ++  +++             +    + P GI  G +  I
Sbjct: 58  PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDI 117

Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
                +  R+    +DGT         +   +  +P +I + + N +  +++ N+ +   
Sbjct: 118 WFTQLNGDRIGKLTADGTI-----YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172

Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
              G++ +                     P  I   N   +   +   +++      G +
Sbjct: 173 TNTGKLEEYPLP------------TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220

Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
                           P  +       I   + G N+I   T D               E
Sbjct: 221 SEYDIP-----TPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEY-----QLQTE 270

Query: 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319
                G+    +G++        +I   
Sbjct: 271 NAEPHGITFGKDGSVWFAL--KCKIGKL 296

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score =  144 bits (365), Expect = 3e-41
 Identities = 26/224 (11%), Positives = 63/224 (28%), Gaps = 24/224 (10%)

Query: 52  PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
           P   + P GI  G +  I     +  R+        +    +    ++P  I +G DN++
Sbjct: 100 PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNAL 159

Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
              ++ N+ +    + G                  P  I   N   +   +   +++   
Sbjct: 160 WFTENQNNSIGRITNTGKLEEYPLP-----TNAAAPVGITSGNDGALWFVEIMGNKIGRI 214

Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
              G + + D                   PH I     + +  ++   +++     +  +
Sbjct: 215 TTTGEISEYDI------------PTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTI 262

Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
                       +   P G+     G +        +I     +
Sbjct: 263 QEYQLQ-----TENAEPHGITFGKDGSVWFALKC--KIGKLNLN 299

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score =  111 bits (279), Expect = 1e-28
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 19/182 (10%)

Query: 47  SRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVG 106
                P   ++P  I +G DN++   ++ N+ +        L+   +      P GI  G
Sbjct: 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSG 196

Query: 107 PDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 166
            D ++   +   +++    + G                  PH I     + +  ++   +
Sbjct: 197 NDGALWFVEIMGNKIGRITTTGEISEYDIP-----TPNARPHAITAGKNSEIWFTEWGAN 251

Query: 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 226
           ++     +  + +                 +   PH I       V  +     ++   +
Sbjct: 252 QIGRITNDNTIQEYQL------------QTENAEPHGITFGKDGSVWFALKC--KIGKLN 297

Query: 227 VN 228
           +N
Sbjct: 298 LN 299

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  160 bits (405), Expect = 4e-46
 Identities = 42/283 (14%), Positives = 77/283 (27%), Gaps = 24/283 (8%)

Query: 55  FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVA 114
           F +  GIA   +N+++     + RV++     +  T            +         + 
Sbjct: 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIG 189

Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
               H V V+     +              +            +   DSN +  +     
Sbjct: 190 WEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT 249

Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITS 234
             V     T + +    G+  G    P+ I     +   +SD N   V     +G     
Sbjct: 250 QEV-----TLIKQLELSGS-LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWF 303

Query: 235 FGSEGS--------EEGQLKFPRGVAVDDQGYISVGDSGNN-RIQ-IFTPDGQ---FLRA 281
            GS           EE     P G+ VD+ G   + D      ++ +   DG        
Sbjct: 304 CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363

Query: 282 FGCWGSGDGE-----FKGLEGVAVMSNGNILVCDRENHRIQVF 319
                  DG      F     +     G   + +     I+ +
Sbjct: 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  129 bits (325), Expect = 1e-34
 Identities = 28/248 (11%), Positives = 69/248 (27%), Gaps = 29/248 (11%)

Query: 46  GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAV 105
           G + +          I     +++ V   ++                          +A+
Sbjct: 173 GGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP------TRIGQLGSTFSGKIGAVAL 226

Query: 106 GP-DNSIVVADSSNHRVQVFQSDG--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
              +  +   DS+ +  +        T + +    G+  G    P+ I     +   +SD
Sbjct: 227 DETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDSNFYMSD 285

Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG-----QLEHPHYIAVSNTNRVIVSDS 217
            N   V     +G        F G       + G         P+ + V       + D 
Sbjct: 286 QNLSSVYKITPDGECE----WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341

Query: 218 -NNHRVQIFDVNGRVIT----SFGSEGSEEG-----QLKFPRGVAVDDQGYISVGDSGNN 267
              + ++  D+    ++            +G        +P  +  D +G   + ++   
Sbjct: 342 FKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK 401

Query: 268 RIQIFTPD 275
            I+ +  +
Sbjct: 402 AIRKYAVE 409

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 23/169 (13%)

Query: 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
           SD N      +D N  V            S     G+L     +  SN      +D +  
Sbjct: 2   SDDNKTTGATYDPNQPV---------TVESFMPVEGKLREKVIVKGSN----FGTDKSKV 48

Query: 221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ--- 277
           +V   D     +++     +       PR +   ++  + V          F  +     
Sbjct: 49  KVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQAQNV 108

Query: 278 --FLRAFGCWGSGDG-----EFKGLEGVAVMSNGNILVCDRENHRIQVF 319
                +    G+ DG     +FK + G+A + N  +L   R++ R+++ 
Sbjct: 109 STISGSASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLI 157

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  119 bits (299), Expect = 7e-31
 Identities = 45/311 (14%), Positives = 93/311 (29%), Gaps = 56/311 (18%)

Query: 50  SEPGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW---PRGIAV 105
            + G F     ++  P +++ +      H  ++     D +   V   ++     R I  
Sbjct: 131 DDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRL----IDFEKEYVSTVYSGLSKVRTICW 186

Query: 106 GPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 164
             + +S+++ +  N+  +      T    F  +                    +  +  N
Sbjct: 187 THEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWN 246

Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 223
             +V  +D   +             ++ +         +I    + N   +   N H + 
Sbjct: 247 AGQVFRYDFTTQE-------TTPLFTIQDSGW----EFHIQFHPSGNYAYIVVVNQHYIL 295

Query: 224 IFDVNGRVIT---------SFGSEGSEEG--------------QLKFPRGVAVDDQGYIS 260
             D + +              G++   +G               +K P      D+    
Sbjct: 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY 355

Query: 261 VGDSGNNRIQIFTPDGQF-----LRAFGCWGSGDGE------FKGLEGVAVMSNGNIL-V 308
             D  N+ I+I TP G+        + G  G  DG+      F   EG+          +
Sbjct: 356 FCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFI 415

Query: 309 CDRENHRIQVF 319
            DREN RI+  
Sbjct: 416 GDRENRRIRKI 426

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  108 bits (270), Expect = 8e-27
 Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 39/253 (15%)

Query: 58  PRGIAVGPD-NSIVVADSSNHRVQ----VCFPHFDLKTNCVFLAFTWPRGIAV-GPDNSI 111
            R I    + +S+++ +  N+  +    +       K            G      +  +
Sbjct: 181 VRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGEL 240

Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQI 170
                +  +V  +           ++ +         +I    + N   +   N H +  
Sbjct: 241 YFNSWNAGQVFRYDFTTQETTPLFTIQDSGW----EFHIQFHPSGNYAYIVVVNQHYILR 296

Query: 171 FDVNGRV--FQSDGTFVGKFGSMGNKAG--------------QLEHPHYIAVSNTNRVIV 214
            D + +     +     G+ G+     G               +++P Y   S+      
Sbjct: 297 SDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYF 356

Query: 215 SDSNNHRVQIFDVNGRVIT-----SFGSEGSEEG------QLKFPRGVAVDDQG-YISVG 262
            D  NH ++I    GRV T     S G+ G  +G      +   P G+  D++     +G
Sbjct: 357 CDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG 416

Query: 263 DSGNNRIQIFTPD 275
           D  N RI+    +
Sbjct: 417 DRENRRIRKIGYE 429

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 85.0 bits (209), Expect = 1e-18
 Identities = 41/347 (11%), Positives = 84/347 (24%), Gaps = 77/347 (22%)

Query: 46  GSRGSEPGCFTWPRGIAVGPDNSIV--VADSSNHRVQVCFPHFDLKTNCV---------- 93
           G  G +   F+    +A  P N     +    +  +Q+     DLK   +          
Sbjct: 129 GPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQL----IDLKNRMLSSPLNINTIP 184

Query: 94  -----FLAFTWPRGIAVGPDNSIVVADSSNHRVQ------VFQSDGTFVGKFGSMGNKAG 142
                 +AF             ++VA   + +        + + +        S      
Sbjct: 185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA 244

Query: 143 QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG----- 196
             +  +   +      +  +     +V   D+                   N        
Sbjct: 245 AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF 304

Query: 197 ---QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVIT---------SFGSEGSEEG 243
                     I +            NNH     D +               +   G  + 
Sbjct: 305 TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD 364

Query: 244 -----QLKFPRG--------VAVDDQGYISVGDSGNNRIQIFTPDGQ-----------FL 279
                ++  P             +++      D  N  ++  TP+G             L
Sbjct: 365 VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL 424

Query: 280 RAFGCWGSGDGE------FKGLEGVAVMSNGNIL-VCDRENHRIQVF 319
                WG+ DG+      F+ + G+       +  V D+  H I+  
Sbjct: 425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 75.0 bits (183), Expect = 3e-15
 Identities = 32/244 (13%), Positives = 54/244 (22%), Gaps = 50/244 (20%)

Query: 97  FTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGS---------------MGNK 140
           +    G  + P +  +        +V        F                         
Sbjct: 246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT 305

Query: 141 AGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRV--FQSDGTFVGKFGSMGNKAG- 196
                    I +            NNH     D +     F +   FVG +   G +   
Sbjct: 306 IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDV 365

Query: 197 ----QLEHPHYI--------AVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS---- 240
               ++ +P                      D  N  V+     G V T  G   S    
Sbjct: 366 GTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425

Query: 241 -------------EEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDGQFLRAFGCWG 286
                        E  + +   G+  DD      V D   + I+  + + +   A     
Sbjct: 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDENI 485

Query: 287 SGDG 290
             D 
Sbjct: 486 PEDE 489

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 70.7 bits (172), Expect = 8e-14
 Identities = 31/254 (12%), Positives = 52/254 (20%), Gaps = 56/254 (22%)

Query: 42  QFKIGSRGSEPGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT---------- 90
            F   S       +    G  + P +  +        +V         KT          
Sbjct: 233 TFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292

Query: 91  ----------NCVFLAFTWPRGIAVGPDNSIV-VADSSNHRVQVFQSDG---------TF 130
                            +W   I + P          +NH       D           F
Sbjct: 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNF 352

Query: 131 VGKFGSMGNKAG-----QLEHPHYI--------AVSNTNRVIVSDSNNHRVQIFDVNGRV 177
           VG +   G +       ++ +P                      D  N  V+     G V
Sbjct: 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIV 412

Query: 178 ----------FQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFD 226
                       +DG   G       +  +      +          V D   H ++   
Sbjct: 413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472

Query: 227 VNGRVITSFGSEGS 240
           +        G E  
Sbjct: 473 MEQ-EENVAGDENI 485

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 23/223 (10%)

Query: 113 VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
           V +  +  V  F   G F G+        G+ E+      S T                +
Sbjct: 59  VINVKSTYVYCFVPSGAFSGEIEIT---VGEGENAVTTTASTTFSYEKKMVVGTLCGYRN 115

Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI 232
                   DG F G  G             +  ++  +  I     +  +Q+ D+  R++
Sbjct: 116 NRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYIC-YDGHKAIQLIDLKNRML 174

Query: 233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCW---GSGD 289
           +S  +  +        R +A + +      D     I     DG+   +   +    + D
Sbjct: 175 SSPLNINTIPTNR--IRSIAFNKKIE-GYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD 231

Query: 290 GEFKGLEGVAV-------------MSNGNILVCDRENHRIQVF 319
           G F     + +               NG +     E  ++   
Sbjct: 232 GTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRL 274

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 26/225 (11%), Positives = 52/225 (23%), Gaps = 23/225 (10%)

Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
              N+R      DG F G  G             +  ++  +  I     +  +Q+ D+ 
Sbjct: 112 GYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYIC-YDGHKAIQLIDLK 170

Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ-----IFDVNG 229
            R+  S         +        +     A      ++  D +    +     I   N 
Sbjct: 171 NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA 230

Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQF--LRAFGCWG 286
                  S+       K   G  +    G +        ++        F  ++  G W 
Sbjct: 231 DGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290

Query: 287 SGDG-------------EFKGLEGVAVMSNGNI-LVCDRENHRIQ 317
                            +      + +   G         NH   
Sbjct: 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFM 335

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 76.5 bits (188), Expect = 4e-16
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 22/228 (9%)

Query: 56  TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVAD 115
           T+   +A  PD +I V +     +    P  D              G+A   +  +V   
Sbjct: 32  TFLENLASAPDGTIFVTNHEVGEIVSITP--DGNQQIHATVEGKVSGLAFTSNGDLVATG 89

Query: 116 SSNH---RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
            +      V + +SDGT V    ++ +        + I   +  + + +DS    + + D
Sbjct: 90  WNADSIPVVSLVKSDGT-VETLLTLPD----AIFLNGITPLSDTQYLTADSYRGAIWLID 144

Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRV 231
           V        G+   +   +     +   P    +      + VS++    +    V+   
Sbjct: 145 VVQP----SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDST- 199

Query: 232 ITSFGSEGSEE--GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
                  G  E   +       A D +G +       N +    PD  
Sbjct: 200 ----DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 243

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)

Query: 98  TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
           T+   +A  PD +I V +     +     DG         G  +G       +A ++   
Sbjct: 32  TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSG-------LAFTSNGD 84

Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
           ++ +  N   + +  +      SDGT V    ++ +        + I   +  + + +DS
Sbjct: 85  LVATGWNADSIPVVSLVK----SDGT-VETLLTLPD----AIFLNGITPLSDTQYLTADS 135

Query: 218 NNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAV-DDQGYISVGDSGNNRIQIFT 273
               + + DV    G +            +  FP    +     ++ V ++    +    
Sbjct: 136 YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIP 195

Query: 274 PDGQFLRAFGCWGSGD--GEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
            D          G  +   E   ++  A    GN+       + +   
Sbjct: 196 VDST-----DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 21/196 (10%), Positives = 49/196 (25%), Gaps = 21/196 (10%)

Query: 57  WPRGIAVGPDNSIVVADSSNHRVQVCF---PHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
              G+A   +  +V    +   + V         ++T        +  GI    D   + 
Sbjct: 73  KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 132

Query: 114 ADSSNHRVQVFQSD---GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQ 169
           ADS    + +       G+   +   +     +   P    +      + VS++    + 
Sbjct: 133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL 192

Query: 170 IFDVNGRVFQSDGTFVGKFGSMGNKA--GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227
              V+                 G      +  +    A      +  +    + V     
Sbjct: 193 RIPVDST------------DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240

Query: 228 NGRVITSFGSEGSEEG 243
           +        +E    G
Sbjct: 241 DRSTTIIAQAEQGVIG 256

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 41/281 (14%)

Query: 58  PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNS- 110
               A+  D S V V       +       + +     +            + + PD+  
Sbjct: 42  FVDTAITSDCSNVVVTSDFCQTLVQ----IETQLEPPKVVAIQEGQSSMADVDITPDDQF 97

Query: 111 IVVADSSNHRVQVFQSDGT--FVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDS-NNH 166
            V     NH   +               +            IA+S N N +I+ D  + +
Sbjct: 98  AVTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLILIDRSSAN 151

Query: 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIF 225
            V+ F ++          +   G      G    P  I  + + N   V++   + + I 
Sbjct: 152 TVRRFKIDAD------GVLFDTGQEFISGGT--RPFNITFTPDGNFAFVANLIGNSIGIL 203

Query: 226 DV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQFLRAFG 283
           +  N   IT   + G+       P  + V  D   + V       +  F      L    
Sbjct: 204 ETQNPENITLLNAVGTNNL----PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK 259

Query: 284 CWGSG----DGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319
            +G G         G   +A+      + +    +  ++VF
Sbjct: 260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 35/247 (14%), Positives = 75/247 (30%), Gaps = 54/247 (21%)

Query: 58  PRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS--I 111
              + + PD+   V     NH   +    +    N             GIA+ P+ +  I
Sbjct: 86  MADVDITPDDQFAVTVTGLNHPFNM--QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLI 143

Query: 112 VVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 169
           ++  SS + V+ F+ D    +   G      G    P  I  + + N   V++   + + 
Sbjct: 144 LIDRSSANTVRRFKIDADGVLFDTGQEFISGGT--RPFNITFTPDGNFAFVANLIGNSIG 201

Query: 170 IFDVNGR------------------VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
           I +                      V   DG+ V                 Y+   +T  
Sbjct: 202 ILETQNPENITLLNAVGTNNLPGTIVVSRDGSTV-----------------YVLTESTVD 244

Query: 212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQ 270
           V   +  +  +      G  +                  +A++  +  + +  + +  ++
Sbjct: 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLF------GANQMALNKTETKLFISANISRELK 298

Query: 271 IFTPDGQ 277
           +FT  G+
Sbjct: 299 VFTISGK 305

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 56  TWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCVFLAF------TWPRGIAVGPD 108
           T P  I   PD +   VA+   + + +     + +                P  I V  D
Sbjct: 176 TRPFNITFTPDGNFAFVANLIGNSIGI----LETQNPENITLLNAVGTNNLPGTIVVSRD 231

Query: 109 NSIV-VADSSNHRVQVFQSDGTFVGKFGSMGNK----AGQLEHPHYIAVS-NTNRVIVSD 162
            S V V   S   V  F      +    S G+        L   + +A++    ++ +S 
Sbjct: 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291

Query: 163 SNNHRVQIFDVNGRV 177
           + +  +++F ++G+V
Sbjct: 292 NISRELKVFTISGKV 306

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 21/178 (11%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 107 PDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSN 164
             N  +V +    R+  F +D    + +        G        A++ + + V+V+   
Sbjct: 8   TSNFGIVVEQHLRRISFFSTDTLEILNQI-----TLG--YDFVDTAITSDCSNVVVTSDF 60

Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 223
              +   +      +      G+                + ++ +    +     NH   
Sbjct: 61  CQTLVQIETQLEPPKVVAIQEGQ-----------SSMADVDITPDDQFAVTVTGLNHPFN 109

Query: 224 IFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFTPDGQ 277
           +   +       S      +        G+A+   G   I +  S  N ++ F  D  
Sbjct: 110 MQSYSFLKNKFISTIPIPYD------AVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 27/172 (15%)

Query: 153 SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVS-NTN 210
           + +N  IV + +  R+  F  +    +      +G                  A++ + +
Sbjct: 7   TTSNFGIVVEQHLRRISFFSTDT--LEILNQITLGY------------DFVDTAITSDCS 52

Query: 211 RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRI 269
            V+V+      +   +           +  +         V +  D  +       N+  
Sbjct: 53  NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS----MADVDITPDDQFAVTVTGLNHPF 108

Query: 270 QIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF 319
            + +      +                G+A+  NGN  IL+     + ++ F
Sbjct: 109 NMQSYSFLKNKFISTIPIP----YDAVGIAISPNGNGLILIDRSSANTVRRF 156

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 41/226 (18%)

Query: 58  PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-IV 112
           P G  + PD + V VA++ ++ V +     D  TN V     A + P+G+AV PD   + 
Sbjct: 34  PMGAVISPDGTKVYVANAHSNDVSI----IDTATNNVIATVPAGSSPQGVAVSPDGKQVY 89

Query: 113 VADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQI 170
           V + ++  + V   +  T  G       K G+   P  +A+S +  ++ V+++ +  V +
Sbjct: 90  VTNMASSTLSVIDTTSNTVAGTV-----KTGK--SPLGLALSPDGKKLYVTNNGDKTVSV 142

Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNG 229
            +            +          G    P  IAV+ +  +V V++ ++  + + D   
Sbjct: 143 INT------VTKAVINTV-----SVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189

Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQG---YISVGDSGNNRIQIF 272
             +       +       P G+AV+ +G   Y++  D   N + + 
Sbjct: 190 NSVIDTVKVEAA------PSGIAVNPEGTKAYVTNVDKYFNTVSMI 229

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 41/227 (18%)

Query: 57  WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-I 111
            P+G+AV PD   + V + ++  + V     D  +N V         P G+A+ PD   +
Sbjct: 75  SPQGVAVSPDGKQVYVTNMASSTLSV----IDTTSNTVAGTVKTGKSPLGLALSPDGKKL 130

Query: 112 VVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 169
            V ++ +  V V        +          G    P  IAV+ +  +V V++ ++  + 
Sbjct: 131 YVTNNGDKTVSVINTVTKAVINTV-----SVG--RSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR---VIVSDSNNHRVQIFD 226
           + D          + +        K      P  IAV+       V   D   + V + D
Sbjct: 184 VIDT------VTNSVIDTV-----KVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230

Query: 227 VNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF 272
                IT+    G +      P G+AV  D   + V  S  N + + 
Sbjct: 231 TGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSFXNTVSVI 271

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 24/131 (18%)

Query: 145 EHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203
            +P    +S +  +V V++++++ V I D       +    +         AG    P  
Sbjct: 32  SNPMGAVISPDGTKVYVANAHSNDVSIIDT------ATNNVIATV-----PAG--SSPQG 78

Query: 204 IAVS-NTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YIS 260
           +AVS +  +V V++  +  + + D  +  V  +  +  S       P G+A+   G  + 
Sbjct: 79  VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-------PLGLALSPDGKKLY 131

Query: 261 VGDSGNNRIQI 271
           V ++G+  + +
Sbjct: 132 VTNNGDKTVSV 142

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 32/169 (18%)

Query: 155 TNRVIVSDSNNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVS-NTNRV 212
           +    +++S +  + + DV     +   T  VG             +P    +S +  +V
Sbjct: 1   STFAYIANSESDNISVIDVTS--NKVTATIPVGS------------NPMGAVISPDGTKV 46

Query: 213 IVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQ 270
            V++++++ V I D     VI +  +  S       P+GVAV  D   + V +  ++ + 
Sbjct: 47  YVANAHSNDVSIIDTATNNVIATVPAGSS-------PQGVAVSPDGKQVYVTNMASSTLS 99

Query: 271 IFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQV 318
           +   D       G   +G    K   G+A+  +G  + V +  +  + V
Sbjct: 100 VI--DTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSV 142

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Length = 276

 Score = 69.9 bits (170), Expect = 6e-14
 Identities = 28/262 (10%), Positives = 72/262 (27%), Gaps = 31/262 (11%)

Query: 62  AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRG-----IAVGPDNSIVVADS 116
              P + +V     N          +  T  +   +   +G     +A      I+ +  
Sbjct: 1   GSSPQHLLVGGSGWNKIA-----IINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY- 54

Query: 117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNTNRVIVSDSNNHRVQIFDVNG 175
            +   ++   DG  +         A           + + N ++    +   +   ++ G
Sbjct: 55  -SKGAKMITRDGRELWNI-----AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG 108

Query: 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSF 235
            V       + K                I  +     +V       V+    NG+++ S 
Sbjct: 109 EV-------LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV 161

Query: 236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL 295
              G+         G        +      +  +Q+     + +R          +   +
Sbjct: 162 KLSGTPFSSAFLDNG------DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215

Query: 296 EGVAVMSNGNILVCDRENHRIQ 317
             +  + NG + +C+ + H  +
Sbjct: 216 AQLFPLQNGGLYICNWQGHDRE 237

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Length = 276

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 27/217 (12%)

Query: 104 AVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 163
              P + +V     N    + +     V ++        +    + +A +    ++ S S
Sbjct: 1   GSSPQHLLVGGSGWNKIAIINKDTKEIVWEY-----PLEKGWECNSVAATKAGEILFSYS 55

Query: 164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNTNRVIVSDSNNHRV 222
                ++   +GR   +              A           + + N ++    +   +
Sbjct: 56  KG--AKMITRDGRELWN------------IAAPAGCEMQTARILPDGNALVAWCGHPSTI 101

Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
              ++ G V++    E   E      R +  + +G   V     + ++   P+GQ L + 
Sbjct: 102 LEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV 161

Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
              G+           A + NG+ LV   + H     
Sbjct: 162 KLSGTP-------FSSAFLDNGDCLVACGDAHCFVQL 191

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 49/234 (20%)

Query: 99  WPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
              G+A    D  +   D S   +      G               L  P  IA+ +  R
Sbjct: 37  VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGR 91

Query: 158 VI-VSDSNNHRVQIFDVNGR----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 212
            I  +DS   R+++  ++G     +F +                 L +P  I        
Sbjct: 92  TIFWTDSQLDRIEVAKMDGTQRRVLFDTG----------------LVNPRGIVTDPVRGN 135

Query: 213 I-VSDSNNHRVQIF--DVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNR 268
           +  +D N    +I    ++G        +      L  P G+  D     +   D+G +R
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDN-----LGLPNGLTFDAFSSQLCWVDAGTHR 190

Query: 269 IQIFTPDGQFLRAFGCWGSGDGEFKGLE---GVAVMSNGNILVCDRENHRIQVF 319
            +   P     R            +GL+    V      N+   D + + +   
Sbjct: 191 AECLNPAQPGRRKV---------LEGLQYPFAVTS-YGKNLYYTDWKTNSVIAM 234

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 34/213 (15%)

Query: 116 SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVN 174
           +   +++    +   + K  +        +    +A       V  +D +   +    ++
Sbjct: 7   AQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH 66

Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVIT 233
           G     + T + +          L  P  IA+ +  R I  +DS   R+++  ++G    
Sbjct: 67  G----GEPTTIIRQD--------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114

Query: 234 SFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF--TPDGQFLRAFGCWGSGDG 290
                G     L  PRG+  D  +G +   D   +  +I     DG   R          
Sbjct: 115 VLFDTG-----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA------- 162

Query: 291 EFKGLE---GVAV-MSNGNILVCDRENHRIQVF 319
               L    G+     +  +   D   HR +  
Sbjct: 163 -QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 64.0 bits (156), Expect = 9e-12
 Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 36/230 (15%)

Query: 58  PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-IV 112
           P G  +      +   ++ N  V       D KT  V    +     R   V P     +
Sbjct: 91  PFGATINNTTQTLWFGNTVNSAVTA----IDAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146

Query: 113 VADSSNHRVQVFQSDGTFV------GKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNN 165
           VAD + + V +       V      G            +    +A+     R+  ++++ 
Sbjct: 147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADG 206

Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQI 224
             + I   + ++                  G+      I++     R  ++DS    V +
Sbjct: 207 ELITIDTADNKILSRKKLL---------DDGKEHFFINISLDTARQRAFITDSKAAEVLV 257

Query: 225 FDV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF 272
            D  NG ++    +             V  +  +    V      ++ + 
Sbjct: 258 VDTRNGNILAKVAAPE--------SLAVLFNPARNEAYVTHRQAGKVSVI 299

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 37/234 (15%)

Query: 58  PRGIAVGPDNSIV-VADSSNHR------VQVCFPHFDLKTNCVFLAFT---WPRGIAVGP 107
              +A     + + +A S + +      V       D  T  V  A      P G  +  
Sbjct: 43  AYEMAYSQQENALWLATSQSRKLDKGGVVYR----LDPVTLEVTQAIHNDLKPFGATINN 98

Query: 108 DNSIV-VADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHP----HYIAVSNTNRVIVS 161
               +   ++ N  V       G   G+      K  +   P      +A   TN V +S
Sbjct: 99  TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS 158

Query: 162 D-SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNN 219
                  + + D      ++     GK                +A+     R+  ++++ 
Sbjct: 159 GIGKESVIWVVDGGNIKLKTAIQNTGKM------------STGLALDSEGKRLYTTNADG 206

Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF 272
             + I   + ++++        +G+  F   +++D  +    + DS    + + 
Sbjct: 207 ELITIDTADNKILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVV 258

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 32/234 (13%)

Query: 100 PRGIAVGPDNSIV-VADSSNHR------VQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIA 151
              +A     + + +A S + +      V                   K      P    
Sbjct: 43  AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-HNDLK------PFGAT 95

Query: 152 VS-NTNRVIVSDSNNHRVQIFDV-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209
           ++  T  +   ++ N  V   D   G V         K           E    +A   T
Sbjct: 96  INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE---LVADDAT 152

Query: 210 NRVIVSD-SNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGN 266
           N V +S       + + D  N ++ T+  + G      K   G+A+D +   +   ++  
Sbjct: 153 NTVYISGIGKESVIWVVDGGNIKLKTAIQNTG------KMSTGLALDSEGKRLYTTNADG 206

Query: 267 NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319
             I I T D + L        G   F     +++ +      + D +   + V 
Sbjct: 207 ELITIDTADNKILSRKKLLDDGKEHF--FINISLDTARQRAFITDSKAAEVLVV 258

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 39/190 (20%)

Query: 57  WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTN------CVFLAFTWPRGIAVGPDN 109
              G+A+  +   +   ++    + +     D   N       +         I +  D 
Sbjct: 186 MSTGLALDSEGKRLYTTNADGELITI-----DTADNKILSRKKLLDDGKEHFFINISLDT 240

Query: 110 S---IVVADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSN 164
           +     + DS    V V    +G  + K       A +      +  +   N   V+   
Sbjct: 241 ARQRAFITDSKAAEVLVVDTRNGNILAKV-----AAPE---SLAVLFNPARNEAYVTHRQ 292

Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 223
             +V + D            V  F           HP+ +A+S +   + VS       Q
Sbjct: 293 AGKVSVIDA------KSYKVVKTF-----DTPT--HPNSLALSADGKTLYVSVKQKSTKQ 339

Query: 224 IFDVNGRVIT 233
                   + 
Sbjct: 340 QEATQPDDVI 349

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 35/230 (15%)

Query: 97  FTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 155
                 +      N I  +D S   +   Q D                ++ P  +AV   
Sbjct: 29  LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWI 87

Query: 156 NRVI-VSDSNNHRVQIFDVNGR----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NT 209
           +  I  +DS    V + D  G     +F+ +                   P  I V    
Sbjct: 88  HSNIYWTDSVLGTVSVADTKGVKRKTLFREN----------------GSKPRAIVVDPVH 131

Query: 210 NRVIVSDSNNH-RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNN 267
             +  +D     +++   +NG  I S  +E      +++P G+ +D   G +   DS  +
Sbjct: 132 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-----IQWPNGITLDLLSGRLYWVDSKLH 186

Query: 268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
            I     +G   +              L     +    +   D  N  I 
Sbjct: 187 SISSIDVNGGNRKTILEDEKRLAHPFSLA----VFEDKVFWTDIINEAIF 232

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 32/226 (14%)

Query: 55  FTWPRGIAVGP-DNSIVVADSSNHRVQVCF----PHFDLKTNCVFLAFTWPRGIAVGPDN 109
                 +      N I  +D S   +                 +      P G+AV   +
Sbjct: 29  LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88

Query: 110 S-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHR 167
           S I   DS    V V  + G                  P  I V      +  +D     
Sbjct: 89  SNIYWTDSVLGTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGT-- 141

Query: 168 VQIFDVNGRVFQS--DGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQI 224
                   ++ +   +G  +    +       ++ P+ I +   + R+   DS  H +  
Sbjct: 142 ------PAKIKKGGLNGVDIYSLVTEN-----IQWPNGITLDLLSGRLYWVDSKLHSISS 190

Query: 225 FDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
            DVNG    +   +     +L  P  +AV +   +   D  N  I 
Sbjct: 191 IDVNGGNRKTILEDE---KRLAHPFSLAVFE-DKVFWTDIINEAIF 232

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 197 QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD 255
            L +   +     +NR+  SD +   +    ++     S          ++ P G+AVD 
Sbjct: 28  NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDW 86

Query: 256 Q-GYISVGDSGNNRIQIFTPDGQFLR 280
               I   DS    + +    G   +
Sbjct: 87  IHSNIYWTDSVLGTVSVADTKGVKRK 112

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 9/104 (8%)

Query: 217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPD 275
           +N H V+   ++    TS          L+    +  +     I   D     I     D
Sbjct: 7   TNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60

Query: 276 GQFLRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCDRENHRIQV 318
                +           +  +G+AV   + NI   D     + V
Sbjct: 61  RAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSV 103

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Length = 328

 Score = 58.9 bits (142), Expect = 5e-10
 Identities = 30/239 (12%), Positives = 72/239 (30%), Gaps = 22/239 (9%)

Query: 54  CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
            FT PR I    D    V    ++R+ +     + KT  +      P           +V
Sbjct: 82  GFTSPRYIHFLSDEKAYVTQIWDYRIFI----INPKTYEITGYIECPDMDMESGSTEQMV 137

Query: 114 ADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLE---HPHYIAVSNTNRVIVSDSNNHRVQI 170
                  V  +      +           +L     P  + +   N++       +    
Sbjct: 138 QYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSP 197

Query: 171 FDV-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVN 228
           +      +++ D            K G  + P  + ++   + +   +++  R+ +    
Sbjct: 198 YGYEAPSLYRIDAETFTVEKQFKFKLG--DWPSEVQLNGTRDTLYWINNDIWRMPVEADR 255

Query: 229 GRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSG----NNRIQIFTPDGQFLRAF 282
             V        ++        G+ V+ + G + V D+        +  ++P G+ +  F
Sbjct: 256 VPVRPFLEFRDTK------YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF 308

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Length = 328

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 27/229 (11%)

Query: 58  PRGIAVGP------DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
              +          D    +  +++H +     +   K       FT PR I    D   
Sbjct: 39  GFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINT-FKEVGRITGFTSPRYIHFLSDEKA 97

Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
            V    ++R+ +       +  +    +   +      +        +   S  +R+   
Sbjct: 98  YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKI 157

Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
           D        + T +G              P  + +   N++       +    +      
Sbjct: 158 DTETDKVVDELT-IGI------------QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS 204

Query: 232 ITSFGSE-GSEEGQLKF-----PRGVAVD-DQGYISVGDSGNNRIQIFT 273
           +    +E  + E Q KF     P  V ++  +  +   ++   R+ +  
Sbjct: 205 LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEA 253

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 27/274 (9%), Positives = 77/274 (28%), Gaps = 67/274 (24%)

Query: 58  PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--------FLAFTWPRGIAVGPDN 109
           P+ +    +  + +    +  + V     D+ +           +            P++
Sbjct: 125 PKSVRFIDNTRLAIPLLEDEGMDV----LDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180

Query: 110 S-IVVADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNH 166
           + + V+    + V VF      +       G      +    +      + V  S+  + 
Sbjct: 181 NELWVSQMQANAVHVFDLKTLAYKATVDLTG------KWSKILLYDPIRDLVYCSNWISE 234

Query: 167 RVQIFDVNGR---------------VFQSDGT--FVGKFGSMGNKAGQLE---------- 199
            + + D   +               +   DG   ++ +F +   ++G             
Sbjct: 235 DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294

Query: 200 ---------HPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR 249
                    +  +I      N++ VSD    +++++D+  + +        +      P 
Sbjct: 295 LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK------PN 348

Query: 250 GVAVDDQG---YISVGDSGNNRIQIFTPDGQFLR 280
            +A+   G   Y+S     +             +
Sbjct: 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 58/249 (23%)

Query: 57  WPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-I 111
           W + +   P   +V  ++  +  + V     D KT            PRG+ +  D   +
Sbjct: 213 WSKILLYDPIRDLVYCSNWISEDISV----IDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268

Query: 112 VVAD-------SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDS 163
            +A        S   R+ ++  D   +              +  +I      N++ VSD 
Sbjct: 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTENKIYVSDM 322

Query: 164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNH-- 220
              +++++D+       +                 + P+ IA+S +   + VS    +  
Sbjct: 323 CCSKIEVYDL------KEKKVQKSI-----PVF--DKPNTIALSPDGKYLYVSCRGPNHP 369

Query: 221 ------------RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNN 267
                       +V + D     +  F   G        P G+ V  D  Y+ + D  ++
Sbjct: 370 TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------NQPTGLDVSPDNRYLVISDFLDH 423

Query: 268 RIQIFTPDG 276
           +I+++  DG
Sbjct: 424 QIRVYRRDG 432

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 23/219 (10%), Positives = 63/219 (28%), Gaps = 25/219 (11%)

Query: 108 DNSIVVADSSNHRVQVFQSDGT----FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 163
             +++         +V + D       +        K  +L+       +++ R+   + 
Sbjct: 39  KGTVIRLGEEILPFKVLEMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEE 98

Query: 164 NNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
            N ++   D  G   +    F  G              P  +   +  R+ +    +  +
Sbjct: 99  LNEKLIALDKEGITHRFISRFKTGF------------QPKSVRFIDNTRLAIPLLEDEGM 146

Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF-TPDGQFLRA 281
            + D+N             + +L F   +++ +   + V     N + +F      +   
Sbjct: 147 DVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT 206

Query: 282 FGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319
               G      K  + +      + +   +  +  I V 
Sbjct: 207 VDLTG------KWSKILLYDPIRDLVYCSNWISEDISVI 239

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 44/312 (14%), Positives = 82/312 (26%), Gaps = 35/312 (11%)

Query: 19  LLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHR 78
           L +S         +   L +  L       G+    F    GI    +  + + D+ N  
Sbjct: 30  LFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ- 88

Query: 79  VQVCFPH---FDLKTNCVFLAFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSDGTFVGK 133
                P    +D   N +      P  I +     N + V    N    V+ SD      
Sbjct: 89  -SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF---VYISD------ 138

Query: 134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN 193
                      +    I V     +       +              DG  V      G 
Sbjct: 139 -------PAPDDKAALIRVDLQTGLAARVLQGYPG--IAPEDIDLVIDGVPVQIGQPDGT 189

Query: 194 KAGQLEHPHYIAVSNTNRVI-VSDSNNHRV-----QIFDVNGRVITSFGSEGSEEGQLKF 247
                   + I +   N  + +S  ++  +                  GS+     +   
Sbjct: 190 VIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249

Query: 248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307
             G+++D    I VGD  ++ I + T   +  +        D +    +     S+G + 
Sbjct: 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL----VTDEKLSWTDSFNFGSDGYLY 305

Query: 308 VCDRENHRIQVF 319
               + H     
Sbjct: 306 FDCNQLHHSAPL 317

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343

 Score = 39.4 bits (91), Expect = 9e-04
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 44  KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV-----FLAFT 98
           ++GS+           GI++  D++I V D ++  + V                     +
Sbjct: 236 ELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGV----ITSADRAYKLLVTDEKLS 291

Query: 99  WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
           W      G D  +    +  H      
Sbjct: 292 WTDSFNFGSDGYLYFDCNQLHHSAPLN 318

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Length = 255

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 33/229 (14%), Positives = 73/229 (31%), Gaps = 21/229 (9%)

Query: 102 GIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
            +      N++    +    +    ++G  +        K         I     N+ ++
Sbjct: 31  SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVK-----DLETIEYIGDNQFVI 85

Query: 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
           SD  ++ + +  +           +             E   Y      +        N 
Sbjct: 86  SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKN- 142

Query: 221 RVQIFDVNGRVITSFGSEGSEEGQLKFPR------GVAVDDQ-GYISVGDSGNNRIQIFT 273
            ++++ VNG +++S     S++  L+         G   + Q   + V    +  +Q  T
Sbjct: 143 PIEVYKVNG-LLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVT 201

Query: 274 PDGQFLRAFGCWGSGDGEFKGL---EGVAVMSNGNILVCDRENHRIQVF 319
             G+ +          G    +   EGVA+ ++GNI +   E +R   F
Sbjct: 202 LVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRF 249

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 56.8 bits (136), Expect = 4e-09
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 26/224 (11%)

Query: 57  WPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IVVA 114
               I   P +  I   D     ++  F         V      P GIAV      +   
Sbjct: 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT 409

Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDV 173
           D+   R++V + +GT      S       LE P  I +      +  +D       I   
Sbjct: 410 DTGTDRIEVTRLNGTMRKILISED-----LEEPRAIVLDPMVGYMYWTDWGEIPK-IERA 463

Query: 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVI 232
                  DG+      +       L  P+ +A+  +  ++   D+   ++++ + +G   
Sbjct: 464 AL-----DGSDRVVLVNTS-----LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513

Query: 233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
                +      +    G  +    Y+   D     I+      
Sbjct: 514 RVLVEDK-----IPHIFGFTLLG-DYVYWTDWQRRSIERVHKRS 551

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 52.5 bits (125), Expect = 7e-08
 Identities = 24/180 (13%), Positives = 60/180 (33%), Gaps = 22/180 (12%)

Query: 55  FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IV 112
              P GIAV      +   D+   R++V   +  ++   +      PR I + P    + 
Sbjct: 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY 450

Query: 113 VADS-SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQI 170
             D     +++    DG+      +       L  P+ +A+  +  ++   D+   ++++
Sbjct: 451 WTDWGEIPKIERAALDGSDRVVLVNTS-----LGWPNGLALDYDEGKIYWGDAKTDKIEV 505

Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 230
            + +G   +     V           ++ H     +   + V  +D     ++       
Sbjct: 506 MNTDGTGRR---VLV---------EDKIPHIFGFTLLG-DYVYWTDWQRRSIERVHKRSA 552

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 29/219 (13%), Positives = 75/219 (34%), Gaps = 29/219 (13%)

Query: 58  PRGIAVGP-DNSIVVADSSNHRVQVCFPH-FDLKTNCVFLAFTWPRGIAVGPDNSIV-VA 114
              +        I  +D S   ++    +  +   N V      P G+A       +   
Sbjct: 42  AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT 101

Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSN-NHRVQIFD 172
           DS  +R++V   DG+             +L+ P  IA+  ++  +  +D     +++   
Sbjct: 102 DSETNRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 156

Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRV 231
           ++G    S    +           ++  P+ + +     ++  +D+  + +   +++G  
Sbjct: 157 MDGS---SRFIIINS---------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT- 203

Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
                 +   +G L  P  + + +   +   D   + I 
Sbjct: 204 ----NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSIL 237

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 42/306 (13%), Positives = 86/306 (28%), Gaps = 57/306 (18%)

Query: 56  TWPRGIAVGPDNSIV-VAD-SSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IV 112
             PR IA+ P +  +   D     +++        +   +     WP G+ +  +   + 
Sbjct: 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 186

Query: 113 VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
            AD+  + +     DGT            G L HP  + +   + +  +D + H +   +
Sbjct: 187 WADAKLNFIHKSNLDGT-----NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN 240

Query: 173 VNG----RVFQSDGTFV----------------------------------GKFGSMGNK 194
                  R   SD                                        F      
Sbjct: 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 300

Query: 195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD 254
            G     +     +    ++  +    ++   ++    T    +      ++    +  D
Sbjct: 301 TGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLE---DIRHAIAIDYD 357

Query: 255 -DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCDRE 312
             +GYI   D     I+    DG   +          +    +G+AV     N+   D  
Sbjct: 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFV-----VTAQIAHPDGIAVDWVARNLYWTDTG 412

Query: 313 NHRIQV 318
             RI+V
Sbjct: 413 TDRIEV 418

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 39/295 (13%)

Query: 57  WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPD------- 108
           WP G+ +  +   +  AD+  + +         +   V  +   P  + +  D       
Sbjct: 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDW 231

Query: 109 --NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSN 164
             +SI+  +              F        ++  Q    +   + N   + + +    
Sbjct: 232 STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPV 291

Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS--------- 215
               Q     G     +G       +      +      I++   +   +          
Sbjct: 292 KPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHA 351

Query: 216 -----DSNNHRVQIFDVNGRVITSFGSEGSE-----EGQLKFPRGVAVD-DQGYISVGDS 264
                D     +   D   R I     +GS        Q+  P G+AVD     +   D+
Sbjct: 352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT 411

Query: 265 GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM-SNGNILVCD-RENHRIQ 317
           G +RI++   +G   +          + +    + +    G +   D  E  +I+
Sbjct: 412 GTDRIEVTRLNGTMRKIL-----ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 20/139 (14%)

Query: 142 GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200
           G LE    +    +   +  SD +   ++  + N      +    G           L  
Sbjct: 37  GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-----------LLS 85

Query: 201 PHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGY 258
           P  +A       +  +DS  +R+++ +++G +      +      L  PR +A+D   G+
Sbjct: 86  PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE-----LDQPRAIALDPSSGF 140

Query: 259 ISVGDSGNN-RIQIFTPDG 276
           +   D G   +I+    DG
Sbjct: 141 MYWTDWGEVPKIERAGMDG 159

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Length = 349

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 20/213 (9%), Positives = 52/213 (24%), Gaps = 17/213 (7%)

Query: 58  PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIV 112
             G A+   +  ++  +  + + V     D+ ++ V+ +        P    + PDN   
Sbjct: 2   DTGPALKAGHEYMIVTNYPNNLHV----VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA 57

Query: 113 -VADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR--VIVSDSNNHRV 168
            V ++    +                           +  A+S   +      +      
Sbjct: 58  YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 117

Query: 169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
             + V     +   T  G               + +  ++   + V+      +   DV 
Sbjct: 118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVK 174

Query: 229 -GRVITSFGSEGSEEGQLKFPRGVAVDDQGYIS 260
            G+   +             P  +         
Sbjct: 175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 207

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Length = 349

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 20/175 (11%)

Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRV 158
             G A+   +  ++  +  + + V       V K   M +K G    P    ++ +    
Sbjct: 2   DTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTA 57

Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR---VIVS 215
            V +++   +   D+                            +  A+S   +     V+
Sbjct: 58  YVLNNHYGDIYGIDL------DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 111

Query: 216 DSNNHRVQIFDVNGRVI---TSFGSEGSEEGQLKFPRG---VAVDDQGYISVGDS 264
            +            R+    T+ G E         PR    +   D G + V   
Sbjct: 112 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 166

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 52.4 bits (125), Expect = 5e-08
 Identities = 29/221 (13%), Positives = 74/221 (33%), Gaps = 29/221 (13%)

Query: 55  FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPH-FDLKTNCVFLAFTWPRGIAVGPDNSIV 112
                 +        I  +D S   ++    +  +   N V      P G+A       +
Sbjct: 34  LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 93

Query: 113 -VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNH-RVQ 169
              DS  +R++V   DG+             +L+ P  IA+  ++  +  +D     +++
Sbjct: 94  YWTDSETNRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIE 148

Query: 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVN 228
              ++G    S    +           ++  P+ + +     ++  +D+  + +   +++
Sbjct: 149 RAGMDGS---SRFIII---------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196

Query: 229 GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI 269
           G    +        G L  P  + + +   +   D   + I
Sbjct: 197 GTNRQAVVK-----GSLPHPFALTLFE-DILYWTDWSTHSI 231

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 45.8 bits (108), Expect = 8e-06
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 53  GCFTWPRGIAVGPDNS-IVVADSSNH-RVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS 110
                PR IA+ P +  +   D     +++        +   +     WP G+ +  +  
Sbjct: 119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 178

Query: 111 -IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 169
            +  AD+  + +     DGT            G L HP  + +   + +  +D + H + 
Sbjct: 179 KLYWADAKLNFIHKSNLDGTNRQAV-----VKGSLPHPFALTLFE-DILYWTDWSTHSIL 232

Query: 170 IFD 172
             +
Sbjct: 233 ACN 235

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 39/238 (16%), Positives = 81/238 (34%), Gaps = 26/238 (10%)

Query: 55  FTWPRG-IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
           FTW  G + V   ++++ +D   +R        D + +          G  +     ++ 
Sbjct: 27  FTWTEGPVYVPARSAVIFSDVRQNRTWAWSD--DGQLSPEMHPSHHQNGHCLNKQGHLIA 84

Query: 114 ADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
                 R++   +  G +     S   K  +L  P+ + ++    +  SD      +  +
Sbjct: 85  CSHGLRRLERQREPGGEWESIADSFEGK--KLNSPNDVCLAPDGSLWFSDPTYGIDKPEE 142

Query: 173 VNGRVFQSDGTFVGKFGSMGN---KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-- 227
             G   +  G +V +    G           P+ +A   +  ++VSD+ ++    + +  
Sbjct: 143 GYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202

Query: 228 -----NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
                   V  +    G          G+ VD  G I    S  + + + TPDG  L 
Sbjct: 203 RGETEYQGVHFTVE-PG-------KTDGLRVDAGGLIWA--SAGDGVHVLTPDGDELG 250

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 31/232 (13%)

Query: 55  FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPH------FDLKTNCVFLAFTWPRGIAVGP 107
               R I   P D  +   DS  + ++             + +         P  +++  
Sbjct: 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 398

Query: 108 DNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNN 165
            +  I     + + + V + DG  VG         G+ + P  + V      +  ++   
Sbjct: 399 YSRYIYWTCEATNVINVTRLDGRSVGVVLK-----GEQDRPRAVVVNPEKGYMYFTNLQE 453

Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQI 224
              +I          DGT        G     L  P  +A+ S   ++  +DS+  R++ 
Sbjct: 454 RSPKIERAA-----LDGTEREVLFFSG-----LSKPIALALDSRLGKLFWADSDLRRIES 503

Query: 225 FDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
            D++G               +  P G+ V +  ++   D     I+     G
Sbjct: 504 SDLSGANRIVLED-----SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTG 549

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 46.3 bits (109), Expect = 8e-06
 Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 26/217 (11%)

Query: 57  WPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IVVA 114
               +     DN I   D S   +   F +     + V     +P G+AV      +  A
Sbjct: 38  EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA 97

Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
           D+  +R++V + DG               L+ P  +A+      +       + +I    
Sbjct: 98  DTGTNRIEVSKLDGQHRQVLVWKD-----LDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152

Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVIT 233
                 DG+              +   + + +     R+  +D + + ++  ++ G    
Sbjct: 153 -----MDGSERTTL------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE 201

Query: 234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
                      L  P G+      YI   D     I+
Sbjct: 202 VIAD------DLPHPFGLTQYQD-YIYWTDWSRRSIE 231

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 28/299 (9%), Positives = 73/299 (24%), Gaps = 44/299 (14%)

Query: 57  WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-FTWPRGIAVGPDNS-IVVA 114
            PR +A+ P    +       + ++     D       +       G+ +      +   
Sbjct: 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWT 183

Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
           D   + ++     G               L HP  +     + +  +D +   ++  +  
Sbjct: 184 DLDTNLIESSNMLGLNREVIAD------DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236

Query: 175 G----RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV-------- 222
                 + Q    +V       +      +    +  + + + ++      V        
Sbjct: 237 SGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYS 296

Query: 223 -------------QIFDVNGRVITSFGSEGSEE-------GQLKFPRGVAVDDQ-GYISV 261
                         +       I     +  +          L+  R +  D     +  
Sbjct: 297 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 356

Query: 262 GDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL-EGVAV-MSNGNILVCDRENHRIQV 318
            DS  N I+    DG                +     +++ + +  I       + I V
Sbjct: 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV 415

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 197 QLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVD 254
            L +   I       ++   DS  + ++    +G +  T   S    +     P  +++D
Sbjct: 338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397

Query: 255 D-QGYISVGDSGNNRIQIFTPDGQFLR 280
               YI       N I +   DG+ + 
Sbjct: 398 IYSRYIYWTCEATNVINVTRLDGRSVG 424

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 196 GQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD 254
             ++    +      NR+  +D +   +    +NG  +      G     L +P G+AVD
Sbjct: 34  TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-----LDYPEGMAVD 88

Query: 255 DQG---YISVGDSGNNRIQIFTPDGQFLR 280
             G   Y +  D+G NRI++   DGQ  +
Sbjct: 89  WLGKNLYWA--DTGTNRIEVSKLDGQHRQ 115

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Length = 347

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 46/280 (16%), Positives = 87/280 (31%), Gaps = 69/280 (24%)

Query: 61  IAVGPDNSIVVADSSNHRVQVCFPHFD----LKTNCVFLAFTWPRGIAVGPDNS-IVVAD 115
           +A+   + +   D  +    +     D     K N V    T P  +AV      +  A+
Sbjct: 45  LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSAN 104

Query: 116 SSNHRVQVF--QSDGT-----FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 168
                 +V    +DG       V   G          H HY  ++  NR+ V D  + +V
Sbjct: 105 YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV 164

Query: 169 QIFDVNGR--------------------VFQSDGTFVGKFGSMGN---------KAGQLE 199
            +++V+                      VF  DG +    G + +         + G   
Sbjct: 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224

Query: 200 H----------------PHYIAVSNTNR-VIVSDSNNHRVQIFDVNG----RVITSFGSE 238
                               I +S+    + VS+   + + +F V       +I    +E
Sbjct: 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE 284

Query: 239 GSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQ 277
           G       FPR   +D  + ++ V +   +   ++  D  
Sbjct: 285 G------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT 318

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 36/273 (13%), Positives = 81/273 (29%), Gaps = 73/273 (26%)

Query: 57   WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIV 112
              +     P + + V   S + V++    +++ +            W  G+   PD S  
Sbjct: 842  TIQYCDFSPYDHLAVIALSQYCVEL----WNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897

Query: 113  VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
            +  S +  ++V+++            N A  L+    +       ++++  N   +Q+  
Sbjct: 898  LTASDDQTIRVWETKKVCK-------NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950

Query: 173  V-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGR 230
               G++       V                    +S     +     +  ++I ++ N R
Sbjct: 951  GKTGQIDYLPEAQV----------------SCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994

Query: 231  VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGC------ 284
            V +S        G  K  R +                    FT DG+ L           
Sbjct: 995  VFSSG------VGHKKAVRHIQ-------------------FTADGKTL-ISSSEDSVIQ 1028

Query: 285  -WGSGDGEFKGLEG-------VAVMSNGNILVC 309
             W    G++  L+          ++ +  +L  
Sbjct: 1029 VWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW 1061

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 34/247 (13%), Positives = 70/247 (28%), Gaps = 63/247 (25%)

Query: 50  SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN 109
              G    P G     D + +        + V             +A     G       
Sbjct: 65  EVNGYGGIPAGCQCDRDANQLFVADMRLGLLV----VQTDGTFEEIAKKDSEG---RRMQ 117

Query: 110 SI--VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167
                  D           +G       +   +    ++   +                 
Sbjct: 118 GCNDCAFDY----------EGNLW--ITAPAGEVAPADYTRSMQ---------------- 149

Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
               +  G ++          G M       + P+ IAV + N     ++IV+++   ++
Sbjct: 150 ----EKFGSIYCFTTD-----GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 200

Query: 223 QIFDV-------NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
             +D+       N +V       G+ EG      G+  D+   + V + G++ I++F PD
Sbjct: 201 WSYDIKGPAKIENKKVWGHI--PGTHEG---GADGMDFDEDNNLLVANWGSSHIEVFGPD 255

Query: 276 GQFLRAF 282
           G   +  
Sbjct: 256 GGQPKMR 262

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 28/229 (12%), Positives = 52/229 (22%), Gaps = 54/229 (23%)

Query: 57  WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADS 116
            P  I +  D  + V    + +            +            A    + +V    
Sbjct: 88  NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-NLQDIIEDLSTAYCI-DDMVFD-- 143

Query: 117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV--IVSDSNNHRVQIFDV- 173
                    S G F   F      +                V  +  D       I ++ 
Sbjct: 144 ---------SKGGFY--FTDFRGYSTN----------PLGGVYYVSPDFRTVTPIIQNIS 182

Query: 174 --NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
             NG    +D   +                 ++  +  NR+      +  V I      +
Sbjct: 183 VANGIALSTDEKVL-----------------WVTETTANRLHRIALEDDGVTIQPFGATI 225

Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
              F            P    +D    + V   G  R+ +F   G  + 
Sbjct: 226 PYYFTGHE-------GPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIG 267

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 45/280 (16%), Positives = 77/280 (27%), Gaps = 35/280 (12%)

Query: 2   CIPSEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----PGCFT 56
           C  SE      C     L           P    L   R+  +                 
Sbjct: 14  CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 73

Query: 57  WPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIV-VA 114
               +        +  +D +  R+     +       V      P G+AV   +  +   
Sbjct: 74  NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 133

Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDV 173
           DS   R++V   DG               LE P  IA+      I  +D  N        
Sbjct: 134 DSGTSRIEVANLDGAHRKVLLWQS-----LEKPRAIALHPMEGTIYWTDWGN-------- 180

Query: 174 NGRVFQS--DGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGR 230
             R+  S  DG+              L  P+ + +     R+   D+ +H ++  +++G 
Sbjct: 181 TPRIEASSMDGSGRRIIADTH-----LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235

Query: 231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
              +  S       L  P  + V +   +   D     I 
Sbjct: 236 HRKAVIS-----QGLPHPFAITVFE-DSLYWTDWHTKSIN 269

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 27/194 (13%)

Query: 102 GIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 161
           G AV     +V  +     +    +DG      G    K   L  P+ + V+    +  +
Sbjct: 90  GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKR--LNSPNDLIVARDGAIWFT 147

Query: 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVSNTNRV-IVSDS 217
           D      +         +     V +    G+       L+HP+ +A S   +   VS +
Sbjct: 148 DPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQT 207

Query: 218 NNHRVQIFDV-----------NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN 266
                   ++           + R   S   +G        P G  VD  G++    S  
Sbjct: 208 PEQGHGSVEITAFAWRDGALHDRRHFASVP-DG-------LPDGFCVDRGGWLWS--SSG 257

Query: 267 NRIQIFTPDGQFLR 280
             + +F  DGQ L 
Sbjct: 258 TGVCVFDSDGQLLG 271

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 34/173 (19%)

Query: 61  IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHR 120
             V  D+ + V  +    V       +  ++        P G+AV  D  I VA    H 
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSS-------QPLGLAVSADGDIAVAACYKH- 433

Query: 121 VQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS 180
           + ++ S G       S         +   +A+SN  + +     + +V ++ ++G    S
Sbjct: 434 IAIY-SHGKLTEVPIS--------YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA-SVS 483

Query: 181 DGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQIFDVNGR 230
           +   +              HP  I   A SN    +V+   + +V  + V   
Sbjct: 484 EVKTIV-------------HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 523

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Length = 343

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 45/281 (16%), Positives = 81/281 (28%), Gaps = 72/281 (25%)

Query: 58  PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCVFLAFTWPRG-----IAVGPDNS- 110
            + + V PD   + V      RV             +  A           I+       
Sbjct: 40  VQPMVVSPDKRYLYVGVRPEFRVLAY--RIAPDDGALTFAAESALPGSLTHISTDHQGQF 97

Query: 111 IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ-LEHPHYIAVSNTNR-VIVSDSNNHR 167
           + V   +   V V +  DG  VG          + L+  H   +S  NR + V      R
Sbjct: 98  VFVGSYNAGNVSVTRLEDGLPVGV-----VDVVEGLDGCHSANISPDNRTLWVPALKQDR 152

Query: 168 VQIFDVNGR----------------------VFQSDGTFVGKFGSMGN---------KAG 196
           + +F V+                        VF  +  +      + +           G
Sbjct: 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212

Query: 197 QLEHPHY----------------IAVSNTNR-VIVSDSNNHRVQIFDVN--GRVITSFGS 237
            +E                    I ++   R +   D     + +F V+  G V++  G 
Sbjct: 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272

Query: 238 EGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQ 277
           + +E      PRG  VD    Y+      ++ I ++   G+
Sbjct: 273 QPTE----TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.98
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.98
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.92
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.92
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
2pm7_B	297	Protein transport protein SEC13, protein transport	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.91
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.89
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.89
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.86
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.86
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.85
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.83
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.83
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.82
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.82
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.82
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.81
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.8
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.79
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.78
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.78
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.77
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.76
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.76
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.76
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.76
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.74
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.74
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.72
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.72
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.69
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.68
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.68
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.68
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.66
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.64
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.62
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.58
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.58
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.58
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.52
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.52
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.51
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.49
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.49
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.48
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.48
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.45
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.39
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.38
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.38
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.38
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.37
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.36
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.36
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.35
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.31
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.28
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.28
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.28
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.27
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.27
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.26
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.17
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.13
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.12
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.08
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.07
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.98
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.95
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.94
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.87
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.87
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.85
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.83
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.71
3ott_A	758	Two-component system sensor histidine kinase; beta	98.7
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.62
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.61
3ott_A	758	Two-component system sensor histidine kinase; beta	98.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.53
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.48
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.47
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.38
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.35
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.23
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.22
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.16
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.14
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.11
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.1
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.96
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.81
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.49
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.47
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.46
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.29
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.18
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.07
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.99
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.98
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.95
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.82
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.69
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.6
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.6
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.46
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.41
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.36
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.2
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.16
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.06
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	95.86
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.61
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.27
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.17
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.16
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.06
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	89.96
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	82.73
3s9j_A	369	Member of DUF4221 family; 6-bladed beta-propeller,	82.38
3s9j_A	369	Member of DUF4221 family; 6-bladed beta-propeller,	81.04

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=227.00  Aligned_cols=273  Identities=15%  Similarity=0.212  Sum_probs=224.0

Q ss_pred             hhhhhhhh--cccccccCCCcc----chhccccceeeeecccCC----------CCCcCCCCcceEEcCCCcEEEEeCCC
Q psy13998         13 CFLLQTLL--VSGIGQVGTTPR----SQYLQKRRLQFKIGSRGS----------EPGCFTWPRGIAVGPDNSIVVADSSN   76 (319)
Q Consensus        13 ~~~~~~~~--~~~i~~~~~~~~----~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~g~~~~~~~~~   76 (319)
                      +.++....  .+.|.+++|+|+    +.++++++.+..+..|..          ..+|...+.++++++++.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            34444433  678999999875    557899988888777752          25677889999999999999999999


Q ss_pred             CeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEE
Q psy13998         77 HRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                      +.|++    |++.+......+.    .+..++++|+++++++++.++.|.+|+ ..++....+      ..+...+.+++
T Consensus       102 ~~i~l----Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~------~~~~~~v~~~~  171 (321)
T 3ow8_A          102 AHIRL----WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL------DTRGKFILSIA  171 (321)
T ss_dssp             SEEEE----EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE------ECSSSCEEEEE
T ss_pred             CcEEE----EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe------cCCCceEEEEE
Confidence            99999    9988776665443    457899999999999999999999999 566666655      23445678999


Q ss_pred             EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCC
Q psy13998        152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGR  230 (319)
Q Consensus       152 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~  230 (319)
                      ++|+++++++++.++.|++||+...      +.+..+      ..+...+.+++++|+++++++++.++.|++||. .+.
T Consensus       172 ~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          172 YSPDGKYLASGAIDGIINIFDIATG------KLLHTL------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTT------EEEEEE------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC------cEEEEE------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            9999999999999999999998743      444444      344556789999999999999999999999996 556


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                      ....+      .++...+.+++|+|++.++++++.|+.|++||. +++.+..+      .+|...+.+++|+|+|+++++
T Consensus       240 ~~~~~------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~------~~h~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          240 LAGTL------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF------FDHQDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             EEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEE
T ss_pred             eeEEE------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE------cCCCCcEEEEEECCCCCEEEE
Confidence            66666      566677899999999999999999999999994 67777777      577788999999999999999


Q ss_pred             eCCCCeEEeC
Q psy13998        310 DRENHRIQVF  319 (319)
Q Consensus       310 ~~~~~~i~v~  319 (319)
                      ++.|+.|++|
T Consensus       308 ~~~d~~i~vw  317 (321)
T 3ow8_A          308 VGDDQEIHIY  317 (321)
T ss_dssp             EETTCCEEEE
T ss_pred             EeCCCeEEEE
Confidence            9999999998

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-33  Score=231.73  Aligned_cols=265  Identities=14%  Similarity=0.253  Sum_probs=222.6

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.++.|+|++.++++++.+..+..|+...        +|...+.+++|+|+|+++++++.|++|++    |+..+..
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i----wd~~~~~  183 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL----WDFQGFE  183 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE----EETTSSC
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE----EeCCCCc
Confidence            45788999999999999999998888886543        45678899999999999999999999999    8887666


Q ss_pred             eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      ....+    ..+.+++++|+++.+++++.++.|++|| .++..+..+      .+|...+..++++++++++++++.|+.
T Consensus       184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~------~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF------TGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE------eCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            55533    3678999999999999999999999999 677777776      456677899999999999999999999


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC--------------------CcEEEEeCCCCeEEEEeC
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--------------------NRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~~~v~~~~~~~i~~~~~  227 (319)
                      |++||+...      +....+      ..+...+.+++++|+                    +.++++++.++.|++||.
T Consensus       258 v~vwd~~~~------~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~  325 (410)
T 1vyh_C          258 VRVWVVATK------ECKAEL------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  325 (410)
T ss_dssp             EEEEETTTC------CEEEEE------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             EEEEECCCC------ceeeEe------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            999998753      333333      334456677888775                    668999999999999996


Q ss_pred             -CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        228 -NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                       .+..+..+      .++...+.+++++|+|+++++++.|+.|++||. +++.+..+      .+|...+++++|+|++.
T Consensus       326 ~~~~~~~~~------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~------~~h~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          326 STGMCLMTL------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL------NAHEHFVTSLDFHKTAP  393 (410)
T ss_dssp             TTTEEEEEE------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE------ECCSSCEEEEEECSSSS
T ss_pred             CCCceEEEE------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE------cCCCCcEEEEEEcCCCC
Confidence             56667666      566677899999999999999999999999994 56777777      56788899999999999


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      ++++++.|+.|++|
T Consensus       394 ~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          394 YVVTGSVDQTVKVW  407 (410)
T ss_dssp             CEEEEETTSEEEEE
T ss_pred             EEEEEeCCCcEEEE
Confidence            99999999999998

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.3e-33  Score=240.01  Aligned_cols=263  Identities=20%  Similarity=0.392  Sum_probs=223.9

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC-------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ...|..++++|++..+.++..+..+..|+..       .+|...+.+++++|+|+++++++.++.|++    |+.. ...
T Consensus       303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~----~~~~-~~~  377 (577)
T 2ymu_A          303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL----WNRN-GQL  377 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETT-CCE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE----EcCC-CCE
Confidence            4567888999999999988877777766543       344567889999999999999999999999    7754 233


Q ss_pred             eE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998         94 FL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  169 (319)
Q Consensus        94 ~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~  169 (319)
                      ..    +-..+.+++++|+++++++++.++.|++|+.+++.+..+      .++...+.+++++|+++++++++.++.|+
T Consensus       378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe------cCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence            33    233678999999999999999999999999888887776      45667789999999999999999999999


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +|+..++       .+..+      ..+...+.+++++|+++++++++.++.|++|+.+++.+..+      .++...+.
T Consensus       452 ~w~~~~~-------~~~~~------~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~------~~h~~~v~  512 (577)
T 2ymu_A          452 LWNRNGQ-------LLQTL------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVR  512 (577)
T ss_dssp             EEETTSC-------EEEEE------ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE------ECCSSCEE
T ss_pred             EEECCCC-------EEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE------eCCCCCEE
Confidence            9998753       33333      33456678999999999999999999999999999988888      66777889


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++|+|+|+++++++.|+.|++||.+|+.+..+      .+|...+++++|+|||+++++++.|+.|++|
T Consensus       513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~------~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECTTSCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            999999999999999999999999999998888      6788899999999999999999999999998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=221.33  Aligned_cols=265  Identities=12%  Similarity=0.119  Sum_probs=203.6

Q ss_pred             cccccccCCCccchhccccceeeeecccCC------------CCC-------cCCCCcceEEcCCCcEEEEeCCCCeEEE
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS------------EPG-------CFTWPRGIAVGPDNSIVVADSSNHRVQV   81 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~-------~~~~~~~v~~~~~g~~~~~~~~~~~v~~   81 (319)
                      ...|.++.|+|++.+++.++ +.+...|+.            ..+       +...+.+++|++++. +++++.|++|++
T Consensus        30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~dg~v~l  107 (344)
T 4gqb_B           30 ERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDSGAVEL  107 (344)
T ss_dssp             CSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETTSEEEE
T ss_pred             cCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECCCEEEE
Confidence            45688999999999988765 434444421            111       124578999999865 667888999999


Q ss_pred             eccccccccceeeE--------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEE
Q psy13998         82 CFPHFDLKTNCVFL--------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAV  152 (319)
Q Consensus        82 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (319)
                          |++.+++...        |-..+.+++|+|+|+++++++.++.|++|| .+++.+..+      .+|...+.++++
T Consensus       108 ----Wd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~------~~h~~~V~~~~~  177 (344)
T 4gqb_B          108 ----WELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY------RAHAAQVTCVAA  177 (344)
T ss_dssp             ----EEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEE
T ss_pred             ----EeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------cCcCCceEEEEe
Confidence                8887654332        234678999999999999999999999999 677777777      567788999999


Q ss_pred             eCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCCCeEEEEeC-CC
Q psy13998        153 SNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDV-NG  229 (319)
Q Consensus       153 ~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~-~~  229 (319)
                      ++++ .++++++.|+.|++||++..      +....+..    ..+...+.+++++|+ ++++++++.++.|++||. ++
T Consensus       178 ~~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          178 SPHKDSVFLSCSEDNRILLWDTRCP------KPASQIGC----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTSS------SCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             cCCCCCceeeecccccccccccccc------ceeeeeec----ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence            9987 58899999999999998743      33333321    122334678999985 578899999999999996 56


Q ss_pred             CEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EE
Q psy13998        230 RVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-IL  307 (319)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~  307 (319)
                      +.+..+      .++...+.+++|+|+| +++++++.|+.|++||.....+..+      .+|...+++++|+|++. ++
T Consensus       248 ~~~~~~------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~------~~H~~~V~~v~~sp~~~~ll  315 (344)
T 4gqb_B          248 SCVLSS------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS------QAHRDFVRDATWSPLNHSLL  315 (344)
T ss_dssp             -CCEEE------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE------CCCSSCEEEEEECSSSTTEE
T ss_pred             cEEEEE------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE------cCCCCCEEEEEEeCCCCeEE
Confidence            666666      5677788999999998 5888999999999999654444444      57888999999999986 78


Q ss_pred             EEeCCCCeEEeC
Q psy13998        308 VCDRENHRIQVF  319 (319)
Q Consensus       308 v~~~~~~~i~v~  319 (319)
                      ++++.|++|++|
T Consensus       316 as~s~D~~v~~w  327 (344)
T 4gqb_B          316 TTVGWDHQVVHH  327 (344)
T ss_dssp             EEEETTSCEEEE
T ss_pred             EEEcCCCeEEEE
Confidence            899999999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.5e-32  Score=219.81  Aligned_cols=266  Identities=14%  Similarity=0.203  Sum_probs=216.4

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.++.|+|++.++++++.+..+..|+...+        |...+.+++|+|+|+++++++.|+.+++    |+..+..
T Consensus        55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i----w~~~~~~  130 (340)
T 1got_B           55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI----YNLKTRE  130 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE----EETTTCS
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE----EECccCC
Confidence            467889999999999999999998888875533        4467889999999999999999999999    7775432


Q ss_pred             ----eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC
Q psy13998         93 ----VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS  163 (319)
Q Consensus        93 ----~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~  163 (319)
                          ...    +...+.++.+.+++. +++++.++.|++|| .+++.+..+      .+|...+.+++++|+++++++++
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF------TGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE------cCCCCceEEEEECCCCCEEEEEe
Confidence                111    223567788887765 67777899999999 567777766      45667889999999999999999


Q ss_pred             CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCc
Q psy13998        164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEE  242 (319)
Q Consensus       164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~  242 (319)
                      .++.|++||+...      .....+      ..+...+.+++++|+++++++++.++.|++||.. ++.+..+..    .
T Consensus       204 ~d~~v~~wd~~~~------~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----~  267 (340)
T 1got_B          204 CDASAKLWDVREG------MCRQTF------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH----D  267 (340)
T ss_dssp             TTSCEEEEETTTC------SEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----T
T ss_pred             CCCcEEEEECCCC------eeEEEE------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc----C
Confidence            9999999998742      444444      3455678899999999999999999999999964 455555421    1


Q ss_pred             ccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .....+.+++|+|+|+++++++.++.|++|| ..++.+..+      .+|...+.+++|+|+|.++++++.|+.|++|
T Consensus       268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe------ecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            2233578899999999999999999999999 467777777      5788899999999999999999999999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-31  Score=216.10  Aligned_cols=267  Identities=12%  Similarity=0.203  Sum_probs=217.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-   91 (319)
                      ...|.+++|+|++.++++++.+.++..|+...+        +...+.+++|+|+|+++++++.|+.+++    |+.... 
T Consensus        64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v----~~~~~~~  139 (354)
T 2pbi_B           64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV----YPLTFDK  139 (354)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE----EECCCCT
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE----EEEeccc
Confidence            467899999999999999999999999976544        3467889999999999999999999999    654321 


Q ss_pred             --------ee-eEEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC--CCeEE
Q psy13998         92 --------CV-FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVI  159 (319)
Q Consensus        92 --------~~-~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~  159 (319)
                              .. ..+...+.+++|++++..+++++.++.|++|| .+++.+..+      .+|...+.++++.+  +++++
T Consensus       140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF------HGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECCCSSCCEE
T ss_pred             cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE------cCCCCCeEEEEEEeCCCCCEE
Confidence                    11 11344678899999999999999999999999 677777777      45666778888877  56899


Q ss_pred             EEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCC
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSE  238 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~  238 (319)
                      ++++.|+.|++||++..      +.+..+      ..+...+.+++++|++.++++++.++.|++||... ..+..+.. 
T Consensus       214 ~sgs~Dg~v~~wd~~~~------~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-  280 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSG------QCVQAF------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-  280 (354)
T ss_dssp             EEEETTSCEEEEETTTC------CEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred             EEEeCCCeEEEEECCCC------cEEEEe------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-
Confidence            99999999999998742      444444      34556788999999999999999999999999654 44444421 


Q ss_pred             CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       239 ~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                         ......+..++++|+|+++++++.++.|++|| .+++.+..+      .+|...+++++|+|||+++++++.|+.|+
T Consensus       281 ---~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l------~~h~~~v~~l~~spdg~~l~sgs~D~~v~  351 (354)
T 2pbi_B          281 ---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL------FGHENRVSTLRVSPDGTAFCSGSWDHTLR  351 (354)
T ss_dssp             ---TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE------CCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             ---CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE------ECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence               11223467899999999999999999999999 478888777      67888999999999999999999999999


Q ss_pred             eC
Q psy13998        318 VF  319 (319)
Q Consensus       318 v~  319 (319)
                      +|
T Consensus       352 vW  353 (354)
T 2pbi_B          352 VW  353 (354)
T ss_dssp             EE
T ss_pred             ec
Confidence            98

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.9e-32  Score=219.27  Aligned_cols=265  Identities=12%  Similarity=0.130  Sum_probs=201.3

Q ss_pred             cccccccCCCccchhccccce------eeeecccCCCC------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEe
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRL------QFKIGSRGSEP------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVC   82 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~------~~~~~~~~~~~------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~   82 (319)
                      ...|.+++|||+|.+|++++.      +..+..|....            +|...+.+++|+|++++++ ++.++.|++ 
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~dg~v~l-  119 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASDSGAVEL-  119 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EETTSCEEE-
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EECCCEEEE-
Confidence            567899999999999999875      44454444322            2345688999999987655 567899999 


Q ss_pred             ccccccccceeeE--------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998         83 FPHFDLKTNCVFL--------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS  153 (319)
Q Consensus        83 ~~~~~~~~~~~~~--------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (319)
                         |++.+.+...        +-..+.+++|+|+++++++++.++.|++|| .+++.+..+      ..|...+.+++++
T Consensus       120 ---Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~------~~h~~~v~~v~~s  190 (357)
T 4g56_B          120 ---WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY------NAHSSEVNCVAAC  190 (357)
T ss_dssp             ---C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEEC
T ss_pred             ---eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------cCCCCCEEEEEEc
Confidence               8876554322        223678999999999999999999999999 567777777      5566788999999


Q ss_pred             CCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeC-CCC
Q psy13998        154 NTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV-NGR  230 (319)
Q Consensus       154 ~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~-~~~  230 (319)
                      +++ .++++++.++.|++||++..      +.......    ..+...+.+++++|++ .++++++.++.|++||. +++
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~------~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKP------KPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSS------SCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             cCCCceeeeeccCCceEEEECCCC------ceeeeeee----ccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            976 57888899999999998742      22222211    2233457889999874 78888889999999995 556


Q ss_pred             EEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEcc-CCcEE
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMS-NGNIL  307 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~  307 (319)
                      .+..+      ..+...+.+++|+|++ +++++++.|+.|++||.+ ++.++.+       +|...+++++|+| |+.++
T Consensus       261 ~~~~~------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-------~H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          261 SAQTS------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-------SHRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             GCEEE------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-------CCSSCEEEEEECSSSTTEE
T ss_pred             EeEEE------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-------CCCCCEEEEEEeCCCCCEE
Confidence            66666      5566678999999987 688899999999999954 5555543       6778899999998 78899


Q ss_pred             EEeCCCCeEEeC
Q psy13998        308 VCDRENHRIQVF  319 (319)
Q Consensus       308 v~~~~~~~i~v~  319 (319)
                      ++++.|+.|++|
T Consensus       328 ~s~s~Dg~v~iW  339 (357)
T 4g56_B          328 TTVGWDHKVLHH  339 (357)
T ss_dssp             EEEETTSCEEEE
T ss_pred             EEEcCCCeEEEE
Confidence            999999999998

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.9e-32  Score=231.50  Aligned_cols=264  Identities=19%  Similarity=0.390  Sum_probs=223.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC-------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ...|..++++|++..+.++..+..+..|...       .+|...+.+++++|+++++++++.++.|++    |+......
T Consensus       262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~----w~~~~~~~  337 (577)
T 2ymu_A          262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL----WNRNGQHL  337 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE----EETTSCEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE----EeCCCCee
Confidence            4668888999999998888777666666432       456678899999999999999999999999    87754332


Q ss_pred             eE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEE
Q psy13998         94 FL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  170 (319)
Q Consensus        94 ~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~  170 (319)
                      ..   +...+.+++++|+++.++++..++.|++|+.+++.+..+      ..+...+.+++++|+++++++++.++.|++
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~  411 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFSPDGQTIASASDDKTVKL  411 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe------cCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence            22   223568899999999999999999999999888887777      456677899999999999999999999999


Q ss_pred             EecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcce
Q psy13998        171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRG  250 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (319)
                      |+..++       .+..+      ..+...+.+++++|+++++++++.++.|++|+.+++.+..+      .++...+.+
T Consensus       412 ~~~~~~-------~~~~~------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~------~~~~~~v~~  472 (577)
T 2ymu_A          412 WNRNGQ-------LLQTL------TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVRG  472 (577)
T ss_dssp             ECTTCC-------EEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEE------ECCSSCEEE
T ss_pred             EeCCCC-------EEEEe------cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEE------cCCCCCEEE
Confidence            997653       33333      33455678899999999999999999999999998888877      566677899


Q ss_pred             EEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        251 VAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       251 i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++|+++++++++.++.|++|+.+++.++.+      .+|...+.+++|+|||+++++++.|+.|++|
T Consensus       473 ~~~spd~~~las~~~d~~i~iw~~~~~~~~~~------~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE------eCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence            99999999999999999999999999999888      6788889999999999999999999999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.8e-31  Score=214.21  Aligned_cols=281  Identities=13%  Similarity=0.241  Sum_probs=217.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.+++|+|++.++++++.+.++.+|+...        +|...+.+++|+|+|+++++++.|+.+++    |++.+..
T Consensus        66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i----w~~~~~~  141 (380)
T 3iz6_a           66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI----FNLSSQA  141 (380)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE----EECCCCS
T ss_pred             ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE----EECCCCc
Confidence            56789999999999999999999999997654        35577899999999999999999999999    7764321


Q ss_pred             e-----------eEEecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeE
Q psy13998         93 V-----------FLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRV  158 (319)
Q Consensus        93 ~-----------~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~  158 (319)
                      .           ..+...+.++.+.|++ ..+++++.|+.|++|| .+++.+..+... ...+|...+.++++.+ ++++
T Consensus       142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-SSSSCCSCEEEEEECSSSCCE
T ss_pred             cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-cCCCCccCeEEEEeecCCCCE
Confidence            0           1123356678888864 5788999999999999 567766655321 1135667788999987 7899


Q ss_pred             EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCC
Q psy13998        159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGS  237 (319)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~  237 (319)
                      +++++.|+.|++||++..     +..+..+      ..|...+.+++++|+++++++++.|+.|++||. .+..+..+..
T Consensus       221 l~sgs~D~~v~~wd~~~~-----~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRIT-----SRAVRTY------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             EEEEETTSCEEEEETTTT-----CCCCEEE------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCeEEEEECCCC-----CcceEEE------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence            999999999999998631     1223333      345667889999999999999999999999996 4555555532


Q ss_pred             CCC-CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998        238 EGS-EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHR  315 (319)
Q Consensus       238 ~~~-~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~  315 (319)
                      ... ...+...+.+++|+|+|+++++++.++.|++||. .++.+..+...  ..+|...+.+++|+|||+++++++.|+.
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL--QNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS--CSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc--cCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            211 1122334789999999999999999999999994 56666555321  1356778999999999999999999999


Q ss_pred             EEeC
Q psy13998        316 IQVF  319 (319)
Q Consensus       316 i~v~  319 (319)
                      |++|
T Consensus       368 i~iW  371 (380)
T 3iz6_a          368 LKIW  371 (380)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=100.00  E-value=3.2e-29  Score=196.91  Aligned_cols=250  Identities=34%  Similarity=0.647  Sum_probs=200.7

Q ss_pred             ceeeeecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----------ecCceeeEE-cCC
Q psy13998         40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----------FTWPRGIAV-GPD  108 (319)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~l~~-~~~  108 (319)
                      ....+|+..+...+++..|.+|+++++|++|+++..++.|.+    |+.. ......          +..|.++++ +++
T Consensus        14 ~~~~~~g~~g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~----~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~   88 (286)
T 1q7f_A           14 IYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----FDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS   88 (286)
T ss_dssp             CEEEEECCBSSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEE----ECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT
T ss_pred             EEEEeccCCCCCCCccCCCceEEECCCCCEEEEECCCCEEEE----ECCC-CcEEEEecccCCCcccccCceEEEEEcCC
Confidence            445677888888999999999999999999999998999999    7765 223322          247889999 578


Q ss_pred             CcEEEEcCC-CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeee
Q psy13998        109 NSIVVADSS-NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK  187 (319)
Q Consensus       109 g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  187 (319)
                      +++|+++.. ++.|.+|+.+++.+..+..     .....|.+++++++|++|+++..++.|.+|+.++.       .+..
T Consensus        89 g~l~v~~~~~~~~i~~~d~~g~~~~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-------~~~~  156 (286)
T 1q7f_A           89 GDIIVTERSPTHQIQIYNQYGQFVRKFGA-----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-------VLHK  156 (286)
T ss_dssp             TEEEEEECGGGCEEEEECTTSCEEEEECT-----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-------EEEE
T ss_pred             CeEEEEcCCCCCEEEEECCCCcEEEEecC-----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-------EEEE
Confidence            899999864 7899999998888777642     23467899999999999999998999999998763       3333


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN  267 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~  267 (319)
                      +..    ......|.+++++++|++|+++..++.|++|+.+++.+..+...    +.+..|.+|+++++|++|+++..++
T Consensus       157 ~~~----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~----g~~~~p~~i~~d~~G~l~v~~~~~~  228 (286)
T 1q7f_A          157 FGC----SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE----GITNYPIGVGINSNGEILIADNHNN  228 (286)
T ss_dssp             EEC----TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT----TTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             eCC----CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccC----CccCCCcEEEECCCCCEEEEeCCCC
Confidence            321    13445789999999999999999899999999999887777431    2346799999999999999999886


Q ss_pred             -EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        268 -RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       268 -~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       .|.+|+.+|+.+..+..    ......|.+++++++|++|+++ .+++|++|
T Consensus       229 ~~i~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~g~l~vs~-~~~~v~v~  276 (286)
T 1q7f_A          229 FNLTIFTQDGQLISALES----KVKHAQCFDVALMDDGSVVLAS-KDYRLYIY  276 (286)
T ss_dssp             CEEEEECTTSCEEEEEEE----SSCCSCEEEEEEETTTEEEEEE-TTTEEEEE
T ss_pred             EEEEEECCCCCEEEEEcc----cCCCCcceeEEECCCCcEEEEC-CCCeEEEE
Confidence             99999999988877743    1223458899999999999996 58999987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-30  Score=204.51  Aligned_cols=263  Identities=14%  Similarity=0.213  Sum_probs=211.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      .+.|.+++|+|++.+++++..+..+..|+...+        |...+.+++|+++++++++++.|+.|++    |+..+..
T Consensus        13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v----wd~~~~~   88 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV----FNYNTGE   88 (304)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE----EETTTCC
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE----EECCCCc
Confidence            577999999999999999999988888876544        3456789999999999999999999999    9988776


Q ss_pred             eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCc-EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC
Q psy13998         93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGT-FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN  165 (319)
Q Consensus        93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~  165 (319)
                      ....+    ..+.+++++|+++++++++.|+.|++|| .++. ....+      .+|...+.+++++| ++.++++++.|
T Consensus        89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~------~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE------CCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh------cccCCcEEEEEECCCCCCEEEEEeCC
Confidence            65543    3678999999999999999999999999 4443 33444      45667889999999 67899999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC--CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE  242 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~  242 (319)
                      +.|++||+...      .....+.     ..+......+.+.+  ++.++++++.++.|++||. +++.+..+      .
T Consensus       163 ~~v~iwd~~~~------~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~------~  225 (304)
T 2ynn_A          163 RTVKVWSLGQS------TPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL------E  225 (304)
T ss_dssp             SEEEEEETTCS------SCSEEEE-----CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE------E
T ss_pred             CeEEEEECCCC------Cccceec-----cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee------C
Confidence            99999998642      1111111     12223455677765  6789999999999999996 56666776      5


Q ss_pred             ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeE
Q psy13998        243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRI  316 (319)
Q Consensus       243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i  316 (319)
                      +|...+..++++|++.++++++.|+.|++||. +++.++.+      ..+...+++++++|++.  +++++..++.+
T Consensus       226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~asg~~~g~~  296 (304)
T 2ynn_A          226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL------NVGLERSWCIATHPTGRKNYIASGFDNGFT  296 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE------CCSSSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec------cCCCccEEEEEECCCCCceEEEEecCCceE
Confidence            67778899999999999999999999999994 67888887      56777899999999875  57777777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.3e-30  Score=205.55  Aligned_cols=269  Identities=14%  Similarity=0.222  Sum_probs=211.4

Q ss_pred             cccccccCCCccc-hhccccceeeeecccCC-------------CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccc
Q psy13998         21 VSGIGQVGTTPRS-QYLQKRRLQFKIGSRGS-------------EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF   86 (319)
Q Consensus        21 ~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~   86 (319)
                      ...|..++++|.+ .++++++.+..+..|..             ..+|...+.+++++++|+++++++.|++|++    |
T Consensus        17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~----w   92 (319)
T 3frx_A           17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL----W   92 (319)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE----E
T ss_pred             cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE----E
Confidence            5778999999865 78899988888777742             2467788999999999999999999999999    9


Q ss_pred             ccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC------C
Q psy13998         87 DLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT------N  156 (319)
Q Consensus        87 ~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------g  156 (319)
                      +..+......+    ..+.++++++++.++++++.|+.|++||..++.+..+      .+|...+..+++.|.      +
T Consensus        93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL------LGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE------CCCSSCEEEEEECCC------C
T ss_pred             ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE------eccCCcEEEEEEccCCCCCCCc
Confidence            98877765543    3678999999999999999999999999888877766      456677888999874      4


Q ss_pred             eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEe
Q psy13998        157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSF  235 (319)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~  235 (319)
                      ..+++++.++.|++||+...      +....+      ..+...+.+++++|+++++++++.++.|++||.. ++.+..+
T Consensus       167 ~~l~s~~~d~~i~~wd~~~~------~~~~~~------~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          167 VTIISAGNDKMVKAWNLNQF------QIEADF------IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL  234 (319)
T ss_dssp             CEEEEEETTSCEEEEETTTT------EEEEEE------CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             cEEEEEeCCCEEEEEECCcc------hhheee------cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            48899999999999999753      333333      3456678899999999999999999999999964 4555555


Q ss_pred             CCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc-eEEeeccc--CCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ-FLRAFGCW--GSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~-~~~~~~~~--~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      .       ....+.+++|+|++.+++++.. ..+++|+.+.. .+..+...  .....+...+.+++|+|||+++++++.
T Consensus       235 ~-------~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~  306 (319)
T 3frx_A          235 S-------AQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT  306 (319)
T ss_dssp             E-------CCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred             c-------CCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence            2       2235789999999988877664 56999996543 33333211  111223456789999999999999999


Q ss_pred             CCeEEeC
Q psy13998        313 NHRIQVF  319 (319)
Q Consensus       313 ~~~i~v~  319 (319)
                      |+.|++|
T Consensus       307 Dg~i~vW  313 (319)
T 3frx_A          307 DNVIRVW  313 (319)
T ss_dssp             TSCEEEE
T ss_pred             CceEEEE
Confidence            9999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-30  Score=205.10  Aligned_cols=236  Identities=15%  Similarity=0.223  Sum_probs=192.1

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .+|...|.+++|+|+|+++++++.|+.|++    |+..+......+.    .+.+++++++++++++++.++.|++|| .
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~l----Wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEL----WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEE----EETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEE----EECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            467788999999999999999999999999    9988776655443    567899999999999999999999999 6


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +++.+..+      .+|...+.+++++|++.++++++.|+.|++||++...     .....+      ..+...+.++++
T Consensus        86 ~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-----~~~~~~------~~h~~~v~~v~~  148 (304)
T 2ynn_A           86 TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----ALEQTF------EGHEHFVMCVAF  148 (304)
T ss_dssp             TCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----EEEEEE------CCCCSCEEEEEE
T ss_pred             CCcEEEEE------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----chhhhh------cccCCcEEEEEE
Confidence            77777777      5677788999999999999999999999999986420     222222      345567889999


Q ss_pred             cC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcC--CCcEEEEeCCCCEEEEEc-CCCceEEe
Q psy13998        207 SN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDD--QGYISVGDSGNNRIQIFT-PDGQFLRA  281 (319)
Q Consensus       207 ~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~--~g~~~v~~~~~~~i~~~~-~~g~~~~~  281 (319)
                      +| ++.++++++.++.|++||.. +.....+.     ..+...+..+++.|  ++.++++++.|+.|++|| .+++.+..
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-----CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCccceec-----cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee
Confidence            98 56899999999999999963 33322221     22333456777775  678999999999999999 46777777


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +      .+|...+..++|+|++.++++++.|+.|++|
T Consensus       224 ~------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          224 L------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW  255 (304)
T ss_dssp             E------ECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             e------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEE
Confidence            7      6788899999999999999999999999998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-29  Score=202.60  Aligned_cols=235  Identities=16%  Similarity=0.234  Sum_probs=191.9

Q ss_pred             CCCcCCCCcceEEcCC----CcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCCcEEEEcCCCCe
Q psy13998         51 EPGCFTWPRGIAVGPD----NSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~----g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      ..+|...+++++|+++    ++++++++.|++|++    |+........      +...+.++++++++.++++++.++.
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~v----W~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKV----WKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEE----EEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEE----EECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            3578899999999875    568999999999999    7765443221      2346788999999999999999999


Q ss_pred             EEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        121 VQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       121 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      |++|| .+++.+..+.      .+...+..++++|+++++++++.++.+.+|+++..      +....+      ..+..
T Consensus       104 i~lWd~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~------~~~~~~------~~~~~  165 (321)
T 3ow8_A          104 IRLWDLENGKQIKSID------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG------KKEYSL------DTRGK  165 (321)
T ss_dssp             EEEEETTTTEEEEEEE------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC------SEEEEE------ECSSS
T ss_pred             EEEEECCCCCEEEEEe------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC------ceeEEe------cCCCc
Confidence            99999 5677776663      33456688999999999999999999999998743      333333      22334


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCc
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQ  277 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~  277 (319)
                      .+.+++++|+++++++++.++.|++||. +++.+..+      .++...+.+++|+|+++++++++.++.|++||. .++
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            5788999999999999999999999996 56666776      556667899999999999999999999999994 567


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+..+      .+|...+.+++|+|++.++++++.|+.|++|
T Consensus       240 ~~~~~------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iw  275 (321)
T 3ow8_A          240 LAGTL------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVW  275 (321)
T ss_dssp             EEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeEEE------cCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence            77777      6788889999999999999999999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-30  Score=210.90  Aligned_cols=269  Identities=15%  Similarity=0.254  Sum_probs=207.4

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCc--------------------------CCCCcceEEcCCCcEEEEeC
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC--------------------------FTWPRGIAVGPDNSIVVADS   74 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------~~~~~~v~~~~~g~~~~~~~   74 (319)
                      ...|.+++|+|++.+++++. +..+..|....+.                          ...+.+++|+|+|+++++++
T Consensus        64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~  142 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  142 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence            45788999999999998865 3344444332221                          11377999999999999999


Q ss_pred             CCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCcee
Q psy13998         75 SNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHY  149 (319)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  149 (319)
                      .|+.|++    |+..+......+    ..+.+++|+|+++.+++++.++.|++|| .+++....+.       +...+..
T Consensus       143 ~d~~i~i----wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~  211 (393)
T 1erj_A          143 EDRLIRI----WDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------IEDGVTT  211 (393)
T ss_dssp             TTSCEEE----EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CSSCEEE
T ss_pred             CCCeEEE----EECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-------cCCCcEE
Confidence            9999999    988776665533    3578999999999999999999999999 5566555542       2245788


Q ss_pred             EEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc-CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998        150 IAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       150 l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~  227 (319)
                      ++++| +++++++++.++.|++||....      ..+..+... .....+...+.+++++|+++++++++.++.|++||.
T Consensus       212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          212 VAVSPGDGKYIAAGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTC------CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCC------cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            99998 8899999999999999998743      333332111 111345567889999999999999999999999996


Q ss_pred             CCC-------------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCC
Q psy13998        228 NGR-------------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFK  293 (319)
Q Consensus       228 ~~~-------------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~  293 (319)
                      ...             ....+      .++...+.++++++++.++++++.|+.|++|| .+++.+..+      .+|..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l------~~h~~  353 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTY------IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML------QGHRN  353 (393)
T ss_dssp             ---------------CEEEEE------ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE------ECCSS
T ss_pred             CCCCCcccccCCCCCcceEEE------ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE------CCCCC
Confidence            421             12222      34556688999999999999999999999999 567887777      57888


Q ss_pred             CcceEEEcc------CCcEEEEeCCCCeEEeC
Q psy13998        294 GLEGVAVMS------NGNILVCDRENHRIQVF  319 (319)
Q Consensus       294 ~~~~l~~~~------~g~~~v~~~~~~~i~v~  319 (319)
                      .+.++++++      +++++++++.|+.|++|
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGSGDCKARIW  385 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             CEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence            899999876      68899999999999998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.98  E-value=8.6e-30  Score=202.69  Aligned_cols=266  Identities=14%  Similarity=0.261  Sum_probs=211.6

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.+++|+|++.+++++..+..+..|+...        +|...+.+++|+|+++++++++.|+.|++    |+..+..
T Consensus        23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v----wd~~~~~   98 (312)
T 4ery_A           23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI----WDVSSGK   98 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCC
T ss_pred             CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE----EECCCCc
Confidence            56799999999999999998888877776543        45567899999999999999999999999    8887766


Q ss_pred             eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      ....+    ..+.+++++|+++++++++.++.|++|| .+++.+..+      ..+...+.+++++++++++++++.++.
T Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
T 4ery_A           99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------PAHSDPVSAVHFNRDGSLIVSSSYDGL  172 (312)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe------cCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            55543    3568899999999999999999999999 567777766      445567899999999999999999999


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~  246 (319)
                      |++||+...      +.+..+.     ..+......++++|+++++++++.++.|++||. +++.+..+.      ++..
T Consensus       173 i~~wd~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~  235 (312)
T 4ery_A          173 CRIWDTASG------QCLKTLI-----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT------GHKN  235 (312)
T ss_dssp             EEEEETTTC------CEEEEEC-----CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC------SSCC
T ss_pred             EEEEECCCC------ceeeEEe-----ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE------ecCC
Confidence            999998743      3333321     122334677999999999999999999999996 455566652      2221


Q ss_pred             C--cceEEE-cCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC--CCCeEEeC
Q psy13998        247 F--PRGVAV-DDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR--ENHRIQVF  319 (319)
Q Consensus       247 ~--~~~i~~-~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~--~~~~i~v~  319 (319)
                      .  .....+ .+++.++++++.++.|++|+. +++.+..+      .+|...+.+++++|++.++++++  .|+.|++|
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL------QGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh------hccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence            1  122333 356789999999999999994 67777777      67888899999999999888775  69999998

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.98  E-value=5.2e-30  Score=211.34  Aligned_cols=234  Identities=16%  Similarity=0.265  Sum_probs=197.1

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .+|...|.+++|+|+++++++++.|+.|++    |+..+......+    ..+.+++|+++++++++++.|+.|++|| .
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~v----wd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKV----WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEE----EETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEE----EECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            467788999999999999999999999999    888766555433    4678999999999999999999999999 4


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .++.+..+      .+|...+.+++++|+++++++++.|+.|++||+...      ..+..+      ..+...+..+++
T Consensus       181 ~~~~~~~~------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~------~~h~~~v~~~~~  242 (410)
T 1vyh_C          181 GFECIRTM------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTF------TGHREWVRMVRP  242 (410)
T ss_dssp             SSCEEECC------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEE------ECCSSCEEEEEE
T ss_pred             CCceeEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEE------eCCCccEEEEEE
Confidence            55666665      566778899999999999999999999999998743      444444      345566788999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC--------------------CcEEEEeCC
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ--------------------GYISVGDSG  265 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------------g~~~v~~~~  265 (319)
                      ++++.++++++.++.|++||. .+.....+      ..+...+.+++++|+                    |.++++++.
T Consensus       243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~  316 (410)
T 1vyh_C          243 NQDGTLIASCSNDQTVRVWVVATKECKAEL------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  316 (410)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCceeeEe------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence            999999999999999999996 55666666      455667888999886                    668999999


Q ss_pred             CCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |+.|++|| ..++.+..+      .+|...+.+++|+|+|+++++++.|+.|++|
T Consensus       317 D~~i~iwd~~~~~~~~~~------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vw  365 (410)
T 1vyh_C          317 DKTIKMWDVSTGMCLMTL------VGHDNWVRGVLFHSGGKFILSCADDKTLRVW  365 (410)
T ss_dssp             TSEEEEEETTTTEEEEEE------ECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred             CCeEEEEECCCCceEEEE------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            99999999 567777777      5778889999999999999999999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.98  E-value=1.9e-30  Score=209.13  Aligned_cols=271  Identities=13%  Similarity=0.149  Sum_probs=205.5

Q ss_pred             cccccCCCccchhccccceeeeecccCCC-----------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      .+..++|+|++.++++++.+..+.+|+..           .+|...+.+++|+|+|+++++++.|+.+++    |+..+.
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i----w~~~~~   93 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI----WKKNQD   93 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE----EEECCC
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE----EEccCC
Confidence            78899999999999999888877777432           467778999999999999999999999999    877544


Q ss_pred             e--eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEE
Q psy13998         92 C--VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS  161 (319)
Q Consensus        92 ~--~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~  161 (319)
                      .  ...    +...+.+++|+|+++++++++.|+.|++||. .+.   .+..+      ..|...+.+++++|+++++++
T Consensus        94 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL------NSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             -EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE------CCCCSCEEEEEECSSSSCEEE
T ss_pred             CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe------cCcCCCeEEEEECCCCCEEEE
Confidence            2  222    2346789999999999999999999999994 332   23333      456677899999999999999


Q ss_pred             eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--C----------
Q psy13998        162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--G----------  229 (319)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~----------  229 (319)
                      ++.++.|++|+......    .....+      ..+...+.+++++|+++++++++.++.|++|+..  +          
T Consensus       168 ~s~d~~i~~w~~~~~~~----~~~~~~------~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDW----VCCATL------EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             EETTSCEEEEEEETTEE----EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             EeCCCcEEEEEecCCCE----EEEEEe------cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence            99999999999764211    111222      3456678999999999999999999999999841  1          


Q ss_pred             ----CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc-----eEEeecccCCCCCCCCCcceEEE
Q psy13998        230 ----RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ-----FLRAFGCWGSGDGEFKGLEGVAV  300 (319)
Q Consensus       230 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~l~~  300 (319)
                          ..+..+.     ..+...+.++++++++..+++++.|+.|++|+.+..     ....+. .....+|...+++++|
T Consensus       238 ~~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v~~  311 (345)
T 3fm0_A          238 DPSWKCICTLS-----GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT-AHLHQAHSQDVNCVAW  311 (345)
T ss_dssp             -CEEEEEEEEC-----SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE-EEETTSSSSCEEEEEE
T ss_pred             CCccceeEEec-----CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE-eeecccccCcEeEeEE
Confidence                0111120     124456789999999999999999999999984321     000000 0001357788999999


Q ss_pred             ccCCc-EEEEeCCCCeEEeC
Q psy13998        301 MSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       301 ~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +|++. ++++++.|+.|++|
T Consensus       312 ~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          312 NPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             CSSSTTEEEEEETTSCEEEE
T ss_pred             eCCCceEEEEcCCCCcEEEE
Confidence            99984 99999999999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1.6e-29  Score=203.74  Aligned_cols=271  Identities=13%  Similarity=0.151  Sum_probs=204.4

Q ss_pred             cccccccCC-----Cc-cchhccccceeeeecccCCC---------------CCcCCCCcceEEcCCCcEEEEeCCCCeE
Q psy13998         21 VSGIGQVGT-----TP-RSQYLQKRRLQFKIGSRGSE---------------PGCFTWPRGIAVGPDNSIVVADSSNHRV   79 (319)
Q Consensus        21 ~~~i~~~~~-----~~-~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v   79 (319)
                      ...|.+++|     ++ ++.++++++.+..+..|+..               .+|...+.+++++|++.++++++.|++|
T Consensus        21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v  100 (343)
T 2xzm_R           21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL  100 (343)
T ss_dssp             SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred             hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcE
Confidence            567888877     65 88899999988887777532               3566788999999999999999999999


Q ss_pred             EEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC
Q psy13998         80 QVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  155 (319)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (319)
                      ++    |++.+......+    ..+.+++|+|+++.+++++.++.|++||..+.........   ..+...+.+++++|+
T Consensus       101 ~l----wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~v~~~~~~~~  173 (343)
T 2xzm_R          101 RL----WDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPI  173 (343)
T ss_dssp             EE----EETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT---TSCSSCEEEEEECCC
T ss_pred             EE----EECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc---cCCCceeeeeeeccc
Confidence            99    998777665533    3678999999999999999999999999766554433211   245567889999987


Q ss_pred             C----------eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEE
Q psy13998        156 N----------RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF  225 (319)
Q Consensus       156 g----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~  225 (319)
                      +          .++++++.++.|++||..+       +....+      ..+...+.+++++|+|+++++++.++.|++|
T Consensus       174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~------~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          174 MKSANKVQPFAPYFASVGWDGRLKVWNTNF-------QIRYTF------KAHESNVNHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             CCSCSCCCSSCCEEEEEETTSEEEEEETTT-------EEEEEE------ECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             cccccccCCCCCEEEEEcCCCEEEEEcCCC-------ceeEEE------cCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence            6          6899999999999999654       222222      3455668899999999999999999999999


Q ss_pred             eC-CCC-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEE--eeccc-----CCCCCCCCCc
Q psy13998        226 DV-NGR-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLR--AFGCW-----GSGDGEFKGL  295 (319)
Q Consensus       226 ~~-~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~--~~~~~-----~~~~~~~~~~  295 (319)
                      |. +.. ....+       .+...+.+++|+|++.+++++ .++.|++|+.. ++...  .+...     ....++...+
T Consensus       241 d~~~~~~~~~~~-------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  312 (343)
T 2xzm_R          241 DILNLTYPQREF-------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC  312 (343)
T ss_dssp             ESSCCSSCSEEE-------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred             ECCCCcccceee-------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence            97 332 22222       112347899999999877655 57789999953 33222  22100     0012455678


Q ss_pred             ceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        296 EGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       296 ~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+++|+|+|+++++++.|+.|++|
T Consensus       313 ~~~~~sp~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          313 TSLAWNALGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             EEEEECSSSCCEEEEETTSEEEEE
T ss_pred             EEEEECCCCCeEEEecCCceEEEE
Confidence            999999999999999999999998

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=5.8e-29  Score=199.84  Aligned_cols=262  Identities=12%  Similarity=0.148  Sum_probs=211.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC-------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~   87 (319)
                      ...|.+++++|++.++..+. +..+..|+...             ++...+.+++++|+++++++++.++.|++    |+
T Consensus        51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~----~d  125 (337)
T 1gxr_A           51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI----WD  125 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE----EE
T ss_pred             CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE----EE
Confidence            56789999999999999887 77777775432             34466889999999999999999999999    88


Q ss_pred             cccce--eeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE
Q psy13998         88 LKTNC--VFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV  160 (319)
Q Consensus        88 ~~~~~--~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~  160 (319)
                      ..+..  ....    ...+.+++++|+++++++++.++.|.+|| .+++.+..+      ..+...+.+++++|++++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~  199 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------QGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee------ecccCceEEEEECCCCCEEE
Confidence            86554  2222    23568899999999999999999999999 566666666      34567789999999999999


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS  240 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (319)
                      +++.++.|.+||++..      +.+..+.       +...+.+++++|++++++++..++.|++|+........+     
T Consensus       200 ~~~~dg~i~~~d~~~~------~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~-----  261 (337)
T 1gxr_A          200 TGGLDNTVRSWDLREG------RQLQQHD-------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-----  261 (337)
T ss_dssp             EEETTSEEEEEETTTT------EEEEEEE-------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-----
T ss_pred             EEecCCcEEEEECCCC------ceEeeec-------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE-----
Confidence            9999999999998753      3333321       234578899999999999999999999999765555555     


Q ss_pred             CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        241 EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ..+...+.+++++|+++++++++.++.|++|+. .++.+...       .+...+.+++++|+++++++++.|+.|++|
T Consensus       262 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          262 -HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------KESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             -cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-------cCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence             455667899999999999999999999999994 56665444       355679999999999999999999999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.4e-28  Score=197.97  Aligned_cols=236  Identities=17%  Similarity=0.287  Sum_probs=191.2

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      ..+|...+.+++|+|+++++++++.|+.|++    |+..+......+.    .+.+++++|+++++++++.++.|++|+.
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~i----Wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLII----WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEE----EETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEE----EECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            4578899999999999999999999999999    8887666555333    5688999999999999999999999994


Q ss_pred             CC-----cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        127 DG-----TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       127 ~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      ..     .....+      .+|...+.++.+.+++. +++++.++.|++||+...      +.+..+      ..+...+
T Consensus       127 ~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~------~~~~~~------~~h~~~v  187 (340)
T 1got_B          127 KTREGNVRVSREL------AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG------QQTTTF------TGHTGDV  187 (340)
T ss_dssp             TTCSBSCEEEEEE------ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT------EEEEEE------CCCSSCE
T ss_pred             ccCCCcceeEEEe------cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC------cEEEEE------cCCCCce
Confidence            32     223333      45667788899988776 677788999999998743      444444      3455678


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceE
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFL  279 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~  279 (319)
                      .+++++|+++++++++.++.|++||. ++.....+      .++...+.+++++|+++++++++.|+.|++||. .++.+
T Consensus       188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence            89999999999999999999999995 56777777      566677899999999999999999999999995 55655


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+..    ..+...+.+++|+|+|+++++++.|+.|++|
T Consensus       262 ~~~~~----~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vw  297 (340)
T 1got_B          262 MTYSH----DNIICGITSVSFSKSGRLLLAGYDDFNCNVW  297 (340)
T ss_dssp             EEECC----TTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEEcc----CCcccceEEEEECCCCCEEEEECCCCeEEEE
Confidence            55521    2233468999999999999999999999998

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=1.7e-29  Score=218.54  Aligned_cols=275  Identities=14%  Similarity=0.160  Sum_probs=208.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ......++|+|++++++.+.. ..+..|...        .+|...+.+++|+|+|+++++++.|++|++    |+..+..
T Consensus        18 ~g~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~l----Wd~~~~~   92 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI----WDTTQTT   92 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EESSSTT
T ss_pred             cCceeEEeeCCCCCEEEeCCC-CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEE----eECCCCc
Confidence            456778899999999887653 244444332        467788999999999999999999999999    8875322


Q ss_pred             e--eE----EecCceeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEE
Q psy13998         93 V--FL----AFTWPRGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVS  161 (319)
Q Consensus        93 ~--~~----~~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~  161 (319)
                      .  ..    +-..+.+++|+|+++.+++.+.+    +.|++|+. ++....+      .+|...+.+++|+|++. .+++
T Consensus        93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l------~gh~~~v~~v~f~p~~~~~l~s  165 (611)
T 1nr0_A           93 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNL------TGQARAMNSVDFKPSRPFRIIS  165 (611)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCC------CCCSSCEEEEEECSSSSCEEEE
T ss_pred             ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCccee------cCCCCCceEEEECCCCCeEEEE
Confidence            1  11    22367899999999887776543    47889983 3333333      56778899999999885 6899


Q ss_pred             eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCC-CC
Q psy13998        162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGS-EG  239 (319)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~-~~  239 (319)
                      ++.|+.|++|+....      +....+      ..|...+.+++|+|+|+++++++.|+.|++||. +++....+.. ..
T Consensus       166 ~s~D~~v~lwd~~~~------~~~~~l------~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~  233 (611)
T 1nr0_A          166 GSDDNTVAIFEGPPF------KFKSTF------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL  233 (611)
T ss_dssp             EETTSCEEEEETTTB------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred             EeCCCeEEEEECCCC------eEeeee------ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence            999999999997642      344444      456677899999999999999999999999995 6776666521 11


Q ss_pred             CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeeccc---------------------------------
Q psy13998        240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCW---------------------------------  285 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~---------------------------------  285 (319)
                      ...+|...+.+++|+|+|+++++++.|+.|++||. +++.+..+...                                 
T Consensus       234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~  313 (611)
T 1nr0_A          234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL  313 (611)
T ss_dssp             SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred             cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence            11256677899999999999999999999999995 45554433210                                 


Q ss_pred             ----CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        286 ----GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       286 ----~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                          ....+|...+.+++++|||+++++++.|+.|++|
T Consensus       314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W  351 (611)
T 1nr0_A          314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW  351 (611)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence                0013567789999999999999999999999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.97  E-value=1.9e-28  Score=196.13  Aligned_cols=255  Identities=20%  Similarity=0.324  Sum_probs=195.7

Q ss_pred             ccCCCCCcCCCCcceEEcCCCcEEEEeCCC------------------------CeEEEeccccccccceeeEE-----e
Q psy13998         47 SRGSEPGCFTWPRGIAVGPDNSIVVADSSN------------------------HRVQVCFPHFDLKTNCVFLA-----F   97 (319)
Q Consensus        47 ~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~------------------------~~v~~~~~~~~~~~~~~~~~-----~   97 (319)
                      .|-.....+..|.+|+++++|++|++++.+                        ++|.+    |+..++.....     +
T Consensus        15 ~wp~~~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~d~~~g~~~~~~~~~~~   90 (329)
T 3fvz_A           15 DWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILV----IDPNNAEILQSSGKNLF   90 (329)
T ss_dssp             TCGGGGCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEE----ECTTTCCEEEEECTTTC
T ss_pred             CCchhceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEE----EECCCCeEEeccCCCcc
Confidence            343345567899999999999999999877                        46888    88765555443     3


Q ss_pred             cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc--EEEEecCC---CccCCCCCCceeEEEeC-CCeEEEEeC-CCCEEEE
Q psy13998         98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT--FVGKFGSM---GNKAGQLEHPHYIAVSN-TNRVIVSDS-NNHRVQI  170 (319)
Q Consensus        98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~l~~~~-~g~~~~~~~-~~~~i~~  170 (319)
                      ..|.+++++++|++|+++..+++|++|+.+++  .+..+...   +....+...|.++++++ ++++|++++ .++.|.+
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            48999999999999999999999999998876  45555321   22234567899999999 899999997 7999999


Q ss_pred             EecCCceeeecCceeeeecccCC----cCCCCCCceeEEEcCC-CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCccc
Q psy13998        171 FDVNGRVFQSDGTFVGKFGSMGN----KAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQ  244 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~  244 (319)
                      |+.++.       ++..+...+.    ....+..|.+++++++ +++|+++..+++|++|+.+ |+.+..+....    .
T Consensus       171 ~~~~g~-------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~----~  239 (329)
T 3fvz_A          171 FSPSGK-------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS----F  239 (329)
T ss_dssp             ECTTSC-------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT----T
T ss_pred             EcCCCC-------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc----c
Confidence            997764       3333332221    1345667999999998 8999999999999999987 88888774322    2


Q ss_pred             ccCcceEEEcC------CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        245 LKFPRGVAVDD------QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       245 ~~~~~~i~~~~------~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      ...+.+++++|      +|++|+++..+.+|.+|+ .+|+.+..++.   ...+...|.+|+++++|.+|+++..+++|+
T Consensus       240 ~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~---~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP---VRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC---SSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC---CCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            23456677777      555566666677999999 67888887742   135677899999999999999999999998


Q ss_pred             eC
Q psy13998        318 VF  319 (319)
Q Consensus       318 v~  319 (319)
                      +|
T Consensus       317 ~~  318 (329)
T 3fvz_A          317 KF  318 (329)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=7.6e-28  Score=193.32  Aligned_cols=263  Identities=11%  Similarity=0.116  Sum_probs=201.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...+..++++|++++++..........+...        .+|-..+.+++++|+++++++++ ++.|++    |+..+.+
T Consensus         9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~i----w~~~~~~   83 (337)
T 1gxr_A            9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKV----WDISHPG   83 (337)
T ss_dssp             EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEE----EETTSTT
T ss_pred             CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEE----EECCCCC
Confidence            4568889999999987655422222222111        24667899999999999999988 999999    7776543


Q ss_pred             ee---E------EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEE
Q psy13998         93 VF---L------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV  160 (319)
Q Consensus        93 ~~---~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~  160 (319)
                      ..   .      +...+.+++++|+++++++++.++.|.+|+.. ++  ....+      ..+...+.++++++++++++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~  157 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL------TSSAPACYALAISPDSKVCF  157 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE------ECSSSCEEEEEECTTSSEEE
T ss_pred             ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec------ccCCCceEEEEECCCCCEEE
Confidence            21   1      22356889999999999999999999999944 43  23333      34456678999999999999


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEG  239 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~  239 (319)
                      +++.++.|.+||++..      +.+..+      ..+...+.+++++|+++++++++.++.|++||.. ++.+..+    
T Consensus       158 ~~~~dg~v~~~d~~~~------~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----  221 (337)
T 1gxr_A          158 SCCSDGNIAVWDLHNQ------TLVRQF------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----  221 (337)
T ss_dssp             EEETTSCEEEEETTTT------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred             EEeCCCcEEEEeCCCC------ceeeee------ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----
Confidence            9999999999998753      344444      2345668899999999999999999999999965 4444444    


Q ss_pred             CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                         .+...+.+++++|+++++++++.++.|++|+........+      ..+...+.+++++|+++++++++.++.|++|
T Consensus       222 ---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  292 (337)
T 1gxr_A          222 ---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             ---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE------cCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence               2334578899999999999999999999999655444444      4677789999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=1.6e-28  Score=212.53  Aligned_cols=292  Identities=14%  Similarity=0.148  Sum_probs=217.9

Q ss_pred             hhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCC----------CcCCCCcceEEcCCCcEEEEe
Q psy13998          6 EAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGPDNSIVVAD   73 (319)
Q Consensus         6 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~g~~~~~~   73 (319)
                      ..+++.++.....+.  ...|.+++|+|++.++++++.+..+.+|+...          +|...+.+++|+|+|+.++++
T Consensus        42 ~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~  121 (611)
T 1nr0_A           42 YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV  121 (611)
T ss_dssp             EEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             EEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEE
Confidence            345666555555554  57799999999999999999888888887532          345678999999999988877


Q ss_pred             CCC----CeEEEeccccccccce--eeEEecCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCC
Q psy13998         74 SSN----HRVQVCFPHFDLKTNC--VFLAFTWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLE  145 (319)
Q Consensus        74 ~~~----~~v~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~  145 (319)
                      +.+    +.|++    |+..+..  ...+...+.+++|+|++. .+++++.|+.|++|+ ..++....+      .+|..
T Consensus       122 ~~~~~~~~~v~~----wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l------~~H~~  191 (611)
T 1nr0_A          122 GEGRERFGHVFL----FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF------GEHTK  191 (611)
T ss_dssp             ECCSSCSEEEEE----TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE------CCCSS
T ss_pred             ECCCCceeEEEE----eeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee------ccccC
Confidence            654    47888    7753211  111344678999999986 689999999999999 556666666      56778


Q ss_pred             CceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc-cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        146 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS-MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       146 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                      .+.+++|+|+|+++++++.|+.|++||....      +.+..+.. ......|...+.+++++|+++++++++.++.|++
T Consensus       192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l  265 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI  265 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCC------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            8999999999999999999999999997632      33333311 1111246677899999999999999999999999


Q ss_pred             EeCC-CCEEEEeCCCC-------------------------------------CCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998        225 FDVN-GRVITSFGSEG-------------------------------------SEEGQLKFPRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       225 ~~~~-~~~~~~~~~~~-------------------------------------~~~~~~~~~~~i~~~~~g~~~v~~~~~  266 (319)
                      ||.. ++.+..+....                                     ...+|...+.+++++|+|+++++++.|
T Consensus       266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            9964 54444332100                                     002455668899999999999999999


Q ss_pred             CEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        267 NRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       267 ~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.|++||. +++....+.     ..|...+.++++++++. +++++.|+.+++|
T Consensus       346 ~~v~~Wd~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~-l~s~s~d~~v~~w  393 (611)
T 1nr0_A          346 GHINSWDISTGISNRVFP-----DVHATMITGIKTTSKGD-LFTVSWDDHLKVV  393 (611)
T ss_dssp             SCEEEEETTTCCEEECSS-----CSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             CcEEEEECCCCceeeecc-----cCCcceEEEEEECCCCc-EEEEEcCCceEEe
Confidence            99999995 455544432     35677899999998764 6677788899887

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=4.7e-28  Score=212.76  Aligned_cols=273  Identities=14%  Similarity=0.176  Sum_probs=209.5

Q ss_pred             cccccccCCCccc-hhccccceeeeecccCCC-------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccc
Q psy13998         21 VSGIGQVGTTPRS-QYLQKRRLQFKIGSRGSE-------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF   86 (319)
Q Consensus        21 ~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~   86 (319)
                      .+.|.+++++|++ .++.+++.+..+.+|...             .+|...+.+++++|+|+++++++.|+.|++    |
T Consensus       382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v----w  457 (694)
T 3dm0_A          382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL----W  457 (694)
T ss_dssp             SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE----E
T ss_pred             CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE----E
Confidence            5678899999865 678899888888888532             356678999999999999999999999999    9


Q ss_pred             ccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCC--eEEE
Q psy13998         87 DLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIV  160 (319)
Q Consensus        87 ~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~  160 (319)
                      ++.+......    ...+.+++++|+++.+++++.|+.|++||..+.....+...  ..+|...+.+++++|++  ..++
T Consensus       458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEE
T ss_pred             ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEE
Confidence            8877665553    34678999999999999999999999999766554444222  13566778999999976  6789


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG  239 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~  239 (319)
                      +++.++.|++||++..      +....+      ..|...+.+++++|+++++++++.++.|++||. +++.+..+.   
T Consensus       536 s~s~d~~v~vwd~~~~------~~~~~~------~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---  600 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNC------KLRSTL------AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE---  600 (694)
T ss_dssp             EEETTSCEEEEETTTC------CEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---
T ss_pred             EEeCCCeEEEEECCCC------cEEEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---
Confidence            9999999999999753      344433      445667889999999999999999999999996 455544431   


Q ss_pred             CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCC-------------CCCCCCCcceEEEccCCc
Q psy13998        240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGS-------------GDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~g~  305 (319)
                          ....+.+++++|++.+++++. ++.|++||. .++.+..+.....             ...+...+.+++|+|||+
T Consensus       601 ----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~  675 (694)
T 3dm0_A          601 ----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS  675 (694)
T ss_dssp             ----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS
T ss_pred             ----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC
Confidence                223578899999988777764 577999995 4555554421100             011122367899999999


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      ++++++.|+.|++|
T Consensus       676 ~l~sgs~Dg~i~iW  689 (694)
T 3dm0_A          676 TLFSGYTDGVIRVW  689 (694)
T ss_dssp             EEEEEETTSEEEEE
T ss_pred             EEEEEcCCCeEEEE
Confidence            99999999999998

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.3e-29  Score=204.78  Aligned_cols=294  Identities=8%  Similarity=0.071  Sum_probs=218.4

Q ss_pred             hhhccchhhh---hhhhhh-cccccccCCCccchhccccceeeeecccCCCC------------CcCCCCcceEEcCC-C
Q psy13998          5 SEAKNINSCF---LLQTLL-VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTWPRGIAVGPD-N   67 (319)
Q Consensus         5 ~~~~~~~~~~---~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~-g   67 (319)
                      .+.+++.++.   ++..+. ...|..++|+|++.+++++..+..+..|....            +|...+.+++|+|+ +
T Consensus        47 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  126 (416)
T 2pm9_A           47 LELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD  126 (416)
T ss_dssp             CEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST
T ss_pred             EEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC
Confidence            3456666554   233332 56799999999999999987777666665433            35578899999998 8


Q ss_pred             cEEEEeCCCCeEEEeccccccccce------eeE-------EecCceeeEEcCC-CcEEEEcCCCCeEEEEc-CCCcEEE
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNC------VFL-------AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQ-SDGTFVG  132 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~------~~~-------~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~-~~~~~~~  132 (319)
                      +++++++.++.|++    |+..+..      ...       +...+.+++++|+ +.++++++.++.|++|| ..++.+.
T Consensus       127 ~~l~s~~~dg~v~i----wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          127 NVLASGGNNGEIFI----WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             TBEEEECSSSCEEB----CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCeEEE----EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence            89999999999999    8886654      211       2346789999998 68999999999999999 5666776


Q ss_pred             EecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCC---EEEEEecCCceeeecCceeeeecccCCcC-CCCCCceeEEEc
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH---RVQIFDVNGRVFQSDGTFVGKFGSMGNKA-GQLEHPHYIAVS  207 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  207 (319)
                      .+.......++...+.+++++|++ .++++++.++   .|++||++..     ...+..+      . .+...+.+++++
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~-----~~~~~~~------~~~~~~~v~~~~~s  271 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA-----NTPLQTL------NQGHQKGILSLDWC  271 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST-----TSCSBCC------CSCCSSCEEEEEEC
T ss_pred             EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC-----CCCcEEe------ecCccCceeEEEeC
Confidence            664432222335678999999987 6888888888   9999998742     0222222      2 455678899999


Q ss_pred             C-CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCC-CceEEeec
Q psy13998        208 N-TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPD-GQFLRAFG  283 (319)
Q Consensus       208 ~-~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~-g~~~~~~~  283 (319)
                      | +++++++++.++.|++||. +++.+..+      ..+...+.+++|+|++ .++++++.++.|++|+.. ++......
T Consensus       272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~  345 (416)
T 2pm9_A          272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQF------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ  345 (416)
T ss_dssp             SSCSSCEEEEESSSEEEEECSSSCCEEEEE------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-
T ss_pred             CCCCCeEEEEeCCCCEEEeeCCCCccceee------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccc
Confidence            9 8899999999999999995 56777777      4566678999999998 899999999999999953 22111100


Q ss_pred             c-----------------------------cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        284 C-----------------------------WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       284 ~-----------------------------~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .                             ......+...+.+++|+|+|+++++++.|+.|++|
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w  410 (416)
T 2pm9_A          346 ETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT  410 (416)
T ss_dssp             ---------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred             cccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence            0                             00001134456699999999999999999999998

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-28  Score=201.43  Aligned_cols=274  Identities=9%  Similarity=0.133  Sum_probs=209.6

Q ss_pred             cccccccCCCccch-hcccc----------ceeeeecccCCCCC----------cCCCCcceEEcCCCcEEEEeCCCCeE
Q psy13998         21 VSGIGQVGTTPRSQ-YLQKR----------RLQFKIGSRGSEPG----------CFTWPRGIAVGPDNSIVVADSSNHRV   79 (319)
Q Consensus        21 ~~~i~~~~~~~~~~-~l~~~----------~~~~~~~~~~~~~~----------~~~~~~~v~~~~~g~~~~~~~~~~~v   79 (319)
                      ...+.+++|+|++. +++++          +.+..+.+|....+          |...+.+++|+|+++++++++.++.|
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence            46788999999987 78887          55666666654322          34678899999999999999999999


Q ss_pred             EEecccccccc----ceeeE----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCC-Cc------EEEEecCCCccCCC
Q psy13998         80 QVCFPHFDLKT----NCVFL----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSD-GT------FVGKFGSMGNKAGQ  143 (319)
Q Consensus        80 ~~~~~~~~~~~----~~~~~----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~-~~------~~~~~~~~~~~~~~  143 (319)
                      ++    |+..+    .....    +...+.+++++|+ ++++++++.++.|++||.. ++      .....   .....+
T Consensus        92 ~v----w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~  164 (416)
T 2pm9_A           92 EL----YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP---GQSMSS  164 (416)
T ss_dssp             EE----ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC---CCSCCS
T ss_pred             EE----eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc---ccccCC
Confidence            99    88765    22333    2336789999998 7899999999999999943 33      11111   111345


Q ss_pred             CCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCC-
Q psy13998        144 LEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH-  220 (319)
Q Consensus       144 ~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~-  220 (319)
                      ...+.+++++++ +.++++++.++.|++||++..      +.+..+........+...+.+++++|++ .++++++.++ 
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  238 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN  238 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred             CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence            677899999998 789999999999999999853      3444443222112235668899999987 6888888888 


Q ss_pred             --eEEEEeCCC--CEEEEeCCCCCCc-ccccCcceEEEcC-CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCC
Q psy13998        221 --RVQIFDVNG--RVITSFGSEGSEE-GQLKFPRGVAVDD-QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFK  293 (319)
Q Consensus       221 --~i~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~  293 (319)
                        .|++||...  .....+      . ++...+.+++++| +++++++++.++.|++|+ .+++.+..+      ..+..
T Consensus       239 ~~~i~~~d~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~------~~~~~  306 (416)
T 2pm9_A          239 DPSILIWDLRNANTPLQTL------NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF------PARGN  306 (416)
T ss_dssp             SCCCCEEETTSTTSCSBCC------CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE------ECSSS
T ss_pred             CceEEEEeCCCCCCCcEEe------ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee------cCCCC
Confidence              999999653  333333      3 4566789999999 889999999999999999 567788777      56778


Q ss_pred             CcceEEEccCC-cEEEEeCCCCeEEeC
Q psy13998        294 GLEGVAVMSNG-NILVCDRENHRIQVF  319 (319)
Q Consensus       294 ~~~~l~~~~~g-~~~v~~~~~~~i~v~  319 (319)
                      .+.+++|+|++ .++++++.|+.|++|
T Consensus       307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw  333 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFACASFDNKIEVQ  333 (416)
T ss_dssp             CCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred             ceEEEEECCCCCCEEEEEecCCcEEEE
Confidence            89999999999 799999999999998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=3.7e-27  Score=187.49  Aligned_cols=235  Identities=14%  Similarity=0.257  Sum_probs=186.2

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .+|...+.+++|+|+|+++++++.|+.|++    |+..+......+    ..+.+++++|+++++++++.++.|++|| .
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~i----w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEE----EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEE----EeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            477889999999999999999999999999    887665554433    3578999999999999999999999999 5


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +++.+..+      .++...+.+++++|+++++++++.++.|++||++..      +.+..+      ..+...+.++++
T Consensus        96 ~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~------~~~~~~v~~~~~  157 (312)
T 4ery_A           96 SGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------KCLKTL------PAHSDPVSAVHF  157 (312)
T ss_dssp             TCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------CEEEEE------CCCSSCEEEEEE
T ss_pred             CCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------EEEEEe------cCCCCcEEEEEE
Confidence            67777766      456677899999999999999999999999998743      444444      334456788999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecc
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGC  284 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~  284 (319)
                      +++++++++++.++.|++||. +++.+..+.     ..+...+..++++|+++++++++.++.|++||. +++.+..+  
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--  230 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--  230 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE--
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeEEe-----ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--
Confidence            999999999999999999996 456655552     122334678999999999999999999999994 66767666  


Q ss_pred             cCCCCCCCCCc--ceEEE-ccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDGEFKGL--EGVAV-MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~~~--~~l~~-~~~g~~~v~~~~~~~i~v~  319 (319)
                          .++....  ....+ .+++.++++++.|+.|++|
T Consensus       231 ----~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw  264 (312)
T 4ery_A          231 ----TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW  264 (312)
T ss_dssp             ----CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred             ----EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence                2332222  22233 3677899999999999998

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.5e-27  Score=191.93  Aligned_cols=280  Identities=16%  Similarity=0.218  Sum_probs=208.9

Q ss_pred             hhhhhhhhh--cccccccCCCcc-chhccccceeeeecccCCC-------------CCcCCCCcceEEcCCCcEEEEeCC
Q psy13998         12 SCFLLQTLL--VSGIGQVGTTPR-SQYLQKRRLQFKIGSRGSE-------------PGCFTWPRGIAVGPDNSIVVADSS   75 (319)
Q Consensus        12 ~~~~~~~~~--~~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~g~~~~~~~~   75 (319)
                      ++.+..++.  ...|.+++|+|+ +.++++++.+.++.+|+..             .+|...+.+++|+|+|+++++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            344444444  678999999997 5789999988888888532             345678899999999999999999


Q ss_pred             CCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEE
Q psy13998         76 NHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                      |+.|++    |+..........    .....+.+.++++.+++++.++.+.+|+..+........    ..+...+..++
T Consensus       107 d~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~~~~v~~~~  178 (340)
T 4aow_A          107 DGTLRL----WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD----ESHSEWVSCVR  178 (340)
T ss_dssp             TSEEEE----EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS----SSCSSCEEEEE
T ss_pred             cccceE----EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe----ccccCcccceE
Confidence            999999    777655544422    245677888889999999999999999965544333322    34556778888


Q ss_pred             EeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-
Q psy13998        152 VSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-  228 (319)
Q Consensus       152 ~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-  228 (319)
                      +.+++  .++++++.++.|++||+...      +.+..+      ..+...+.+++++|+++++++++.++.|++||.. 
T Consensus       179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          179 FSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNH------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             EccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEe------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            88754  67888889999999999853      444444      3455678899999999999999999999999965 


Q ss_pred             CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeeccc---CCCCCCCCCcceEEEccCC
Q psy13998        229 GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCW---GSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~---~~~~~~~~~~~~l~~~~~g  304 (319)
                      .+.+..+.       ....+..++++|++.++++ +.++.|++|+..+ ..+..+...   .....+...+.+++|+|||
T Consensus       247 ~~~~~~~~-------~~~~v~~~~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  318 (340)
T 4aow_A          247 GKHLYTLD-------GGDIINALCFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG  318 (340)
T ss_dssp             TEEEEEEE-------CSSCEEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred             Cceeeeec-------CCceEEeeecCCCCceeec-cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence            44455441       2235788999998776554 5689999999654 344443211   1123566789999999999


Q ss_pred             cEEEEeCCCCeEEeC
Q psy13998        305 NILVCDRENHRIQVF  319 (319)
Q Consensus       305 ~~~v~~~~~~~i~v~  319 (319)
                      +++++++.|+.|++|
T Consensus       319 ~~l~sgs~Dg~v~iW  333 (340)
T 4aow_A          319 QTLFAGYTDNLVRVW  333 (340)
T ss_dssp             SEEEEEETTSCEEEE
T ss_pred             CEEEEEeCCCEEEEE
Confidence            999999999999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=4.4e-28  Score=201.53  Aligned_cols=273  Identities=14%  Similarity=0.129  Sum_probs=198.4

Q ss_pred             ccccccCCCcc-chhccccceeeeecccCCC----------CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccc
Q psy13998         22 SGIGQVGTTPR-SQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        22 ~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      ..|.+++|+|. +.++++++.+..+.+|+..          .+|...|.+|+|+| +++++++++.|++|++    ||+.
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i----wd~~  195 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL----QDFK  195 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE----EETT
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE----eecc
Confidence            45899999994 5688899888888887543          35667899999998 7889999999999999    8886


Q ss_pred             cceeeEEe------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEe
Q psy13998         90 TNCVFLAF------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSD  162 (319)
Q Consensus        90 ~~~~~~~~------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~  162 (319)
                      +.......      ....+++++++++++++++.++.|++||.+++.+..+      .+|...+.+++|+|++. +++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~------~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL------RMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCS------BCCSSCEEEEEECTTCSSEEEEE
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEE------ecccceEEeeeecCCCceEEEEe
Confidence            54332211      1346789999999999999999999999877765544      45667889999999774 78888


Q ss_pred             CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC
Q psy13998        163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE  241 (319)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~  241 (319)
                      +.|+.|++||+...      +....+   .....|...+.+++|+|+|.++++++.++.|++||. ++.....+......
T Consensus       270 s~d~~v~iwd~~~~------~~~~~~---~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~  340 (435)
T 4e54_B          270 SVDQTVKIWDLRQV------RGKASF---LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR  340 (435)
T ss_dssp             ETTSBCCEEETTTC------CSSSCC---SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC
T ss_pred             cCcceeeEEecccc------cccceE---EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc
Confidence            99999999998742      111111   011345566788999999999999999999999995 45555444222111


Q ss_pred             cccccCcceEEEcCCCcEEEEeC------------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceE-EEccCCcEE
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDS------------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGV-AVMSNGNIL  307 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~------------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~~~  307 (319)
                      ......+....+++++.+++++.            .++.|++|+ .+|+.+..+.     ..+...+.++ +|+|+|+++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-----~~~~~~v~s~~~fspdg~~l  415 (435)
T 4e54_B          341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-----DPESSGISSLNEFNPMGDTL  415 (435)
T ss_dssp             CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-----CSSCCCCCCEEEECTTSSCE
T ss_pred             ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-----CCCCCcEEEEEEECCCCCEE
Confidence            11112234456666665544443            335799999 5677777652     2455667777 699999999


Q ss_pred             EEeCCCCeEEeC
Q psy13998        308 VCDRENHRIQVF  319 (319)
Q Consensus       308 v~~~~~~~i~v~  319 (319)
                      ++++ |+.|++|
T Consensus       416 asg~-d~~i~iW  426 (435)
T 4e54_B          416 ASAM-GYHILIW  426 (435)
T ss_dssp             EEEC-SSEEEEC
T ss_pred             EEEc-CCcEEEE
Confidence            8876 7789999

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=1.2e-27  Score=190.72  Aligned_cols=234  Identities=14%  Similarity=0.274  Sum_probs=185.6

Q ss_pred             CCCCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccce-----eeE----EecCceeeEEcCCCcEEEEcCCC
Q psy13998         49 GSEPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNC-----VFL----AFTWPRGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~----~~~~~~~l~~~~~g~~~~~~~~~  118 (319)
                      +...||...|.+++++|++ +++++++.|++|++    |+.....     ...    |...+.+++++++++++++++.|
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~----W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLIS----WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE----EEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEE----ecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            3456889999999999965 79999999999999    7764321     112    23467889999999999999999


Q ss_pred             CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +.|++|| .+++.+..+      .+|...+.++++++++.++++++.|+.|++|++++.       .+..+      ..+
T Consensus        87 ~~v~~wd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-------~~~~~------~~h  147 (319)
T 3frx_A           87 KTLRLWDVATGETYQRF------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-------CLATL------LGH  147 (319)
T ss_dssp             SEEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-------EEEEE------CCC
T ss_pred             CEEEEEECCCCCeeEEE------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eEEEE------ecc
Confidence            9999999 677777776      567778899999999999999999999999999753       23333      334


Q ss_pred             CCCceeEEEcCC------CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEE
Q psy13998        198 LEHPHYIAVSNT------NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ  270 (319)
Q Consensus       198 ~~~~~~~~~~~~------g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~  270 (319)
                      ...+..+++.|.      +.++++++.++.|++||.. ++....+      .++...+.+++++|+|+++++++.|+.|+
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~h~~~v~~~~~sp~g~~l~s~~~dg~i~  221 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF------IGHNSNINTLTASPDGTLIASAGKDGEIM  221 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE------CCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee------cCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            456677888774      4588999999999999965 4555555      56667789999999999999999999999


Q ss_pred             EEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        271 IFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       271 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +||. .++.+..+.       ....+.+++|+|++.+++++..+ .+++|
T Consensus       222 iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~~~la~~~~~-~i~v~  263 (319)
T 3frx_A          222 LWNLAAKKAMYTLS-------AQDEVFSLAFSPNRYWLAAATAT-GIKVF  263 (319)
T ss_dssp             EEETTTTEEEEEEE-------CCSCEEEEEECSSSSEEEEEETT-EEEEE
T ss_pred             EEECCCCcEEEEec-------CCCcEEEEEEcCCCCEEEEEcCC-CcEEE
Confidence            9995 566666662       23568999999999988877654 46665

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=1.5e-27  Score=192.85  Aligned_cols=237  Identities=16%  Similarity=0.212  Sum_probs=188.9

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      ..||...+.+++|+|+++++++++.|++|++    |+..+......+    ..+.+++++|+|..+++++.++.+.+|+.
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~v----Wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIV----WDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEE----EECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            4578899999999999999999999999999    887665554433    35688999999999999999999999984


Q ss_pred             CCc-------EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        127 DGT-------FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       127 ~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      ...       ....+      ..|...+.++++++++..+++++.|+.|++||++..      +.+..+      ..+..
T Consensus       136 ~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~------~~h~~  197 (354)
T 2pbi_B          136 TFDKNENMAAKKKSV------AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------QLLQSF------HGHGA  197 (354)
T ss_dssp             CCCTTCCSGGGCEEE------EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEE------ECCSS
T ss_pred             eccccccccccceee------eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------eEEEEE------cCCCC
Confidence            211       11122      345677889999999999999999999999998743      444444      33445


Q ss_pred             CceeEEEcC--CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-C
Q psy13998        200 HPHYIAVSN--TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-D  275 (319)
Q Consensus       200 ~~~~~~~~~--~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~  275 (319)
                      .+.++++.+  +++++++++.++.|++||. +++.+..+      ..+...+.+++++|++.++++++.|+.|++||. .
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            667788876  5689999999999999995 56777777      566677899999999999999999999999995 4


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++.+..+..    ......+.+++|+|+|+++++++.|+.|++|
T Consensus       272 ~~~~~~~~~----~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw  311 (354)
T 2pbi_B          272 DREVAIYSK----ESIIFGASSVDFSLSGRLLFAGYNDYTINVW  311 (354)
T ss_dssp             TEEEEEECC----TTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcC----CCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence            555544421    2233467899999999999999999999998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-28  Score=196.24  Aligned_cols=266  Identities=13%  Similarity=0.121  Sum_probs=193.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC-----------CC-cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----------PG-CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~-~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ...|.+++++|+  ++++++.+.++.+|+..           .+ |...+.+++|+|+++++++++.|+.|++    |+.
T Consensus        14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i----w~~   87 (330)
T 2hes_X           14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI----WAK   87 (330)
T ss_dssp             SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE----EEC
T ss_pred             CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE----EEc
Confidence            567888888886  88888877776666432           22 6667899999999999999999999999    766


Q ss_pred             ccc-------eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CC----cEEEEecCCCccCCCCCCceeEEE
Q psy13998         89 KTN-------CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DG----TFVGKFGSMGNKAGQLEHPHYIAV  152 (319)
Q Consensus        89 ~~~-------~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~l~~  152 (319)
                      ...       ....    +...+.+++|+|+++++++++.|+.|++||. ..    +.+..+      .+|...+.++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~------~~h~~~v~~v~~  161 (330)
T 2hes_X           88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL------QEHSQDVKHVIW  161 (330)
T ss_dssp             -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE------CCCSSCEEEEEE
T ss_pred             ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe------ccCCCceEEEEE
Confidence            321       1122    3346789999999999999999999999995 32    234444      456678899999


Q ss_pred             eCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCC
Q psy13998        153 SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGR  230 (319)
Q Consensus       153 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~  230 (319)
                      +|++.++++++.|+.|++|+.....    .+.+..+      ..|...+.+++++|+  +.++++++.++.|++|+....
T Consensus       162 ~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          162 HPSEALLASSSYDDTVRIWKDYDDD----WECVAVL------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             CSSSSEEEEEETTSCEEEEEEETTE----EEEEEEE------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEc------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            9999999999999999999875321    1223333      345567888999998  678899999999999996421


Q ss_pred             ---------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-Cc--eEEeecccCCCCCCCC-Ccce
Q psy13998        231 ---------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQ--FLRAFGCWGSGDGEFK-GLEG  297 (319)
Q Consensus       231 ---------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~~-~~~~  297 (319)
                               ....+.     ..+...+.++++++++ ++++++.|+.|++|+.. ++  .+....     ..|.. .+.+
T Consensus       232 ~~~~~~~~~~~~~~~-----~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-----~~h~~~~v~~  300 (330)
T 2hes_X          232 DEDDQQEWVCEAILP-----DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-----LCHGVYEINV  300 (330)
T ss_dssp             CTTSCEEEEEEEECC-----SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-----CTTTTSCEEE
T ss_pred             CccccceeEEeeecc-----cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-----cccccceEEE
Confidence                     122221     1245578899999765 67888899999999953 42  222221     23444 7899


Q ss_pred             EEEcc--CCcEEEEeCCCCeEEeC
Q psy13998        298 VAVMS--NGNILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~--~g~~~v~~~~~~~i~v~  319 (319)
                      ++|+|  +++++++++.|+.|++|
T Consensus       301 v~~~~~~~~~~las~s~Dg~v~~W  324 (330)
T 2hes_X          301 VKWLELNGKTILATGGDDGIVNFW  324 (330)
T ss_dssp             EEEC-----CCEEEEETTSEEEEE
T ss_pred             EEEecCCCceEEEEecCCCcEEEE
Confidence            99999  68899999999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=7.1e-28  Score=194.14  Aligned_cols=238  Identities=13%  Similarity=0.193  Sum_probs=184.7

Q ss_pred             CCcCC-CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-------EecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         52 PGCFT-WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-------AFTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        52 ~~~~~-~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      .+|.. .++.++|+|+|+++++++.|+.|++    |+..+.....       +...+.+++|+|+++++++++.++.+++
T Consensus        12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~i----w~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i   87 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRI----WGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI   87 (345)
T ss_dssp             CCSTTSCEEEEEECTTSSCEEEEETTSCEEE----EEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEcCCCeEEE----EEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence            35555 7889999999999999999999999    8876554221       2336789999999999999999999999


Q ss_pred             EcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        124 FQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       124 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      |+.+ +.  .+..+      .+|...+.+++|+|+++++++++.|+.|++||++....   ...+..+      ..+...
T Consensus        88 w~~~~~~~~~~~~~------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~------~~h~~~  152 (345)
T 3fm0_A           88 WKKNQDDFECVTTL------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---YECVSVL------NSHTQD  152 (345)
T ss_dssp             EEECCC-EEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---EEEEEEE------CCCCSC
T ss_pred             EEccCCCeEEEEEc------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---eEEEEEe------cCcCCC
Confidence            9943 32  34444      56777889999999999999999999999999864210   0112222      345566


Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeCCCC---EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC--C
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGR---VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP--D  275 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~  275 (319)
                      +.+++++|+++++++++.++.|++|+....   ....+      .++...+.+++|+|+|+++++++.|+.|++|+.  .
T Consensus       153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~------~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL------EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe------cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence            788999999999999999999999996433   22344      556677899999999999999999999999983  1


Q ss_pred             Cc--------------eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQ--------------FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.              .+..+.     ..|...+.++++++++.++++++.|+.|++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLS-----GFHSRTIYDIAWCQLTGALATACGDDAIRVF  279 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEEC-----SSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             CCCccceeeccCCccceeEEec-----CCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            11              111221     1256679999999999999999999999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-27  Score=193.80  Aligned_cols=271  Identities=12%  Similarity=0.121  Sum_probs=211.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.+++|+|++.+++++..+..+..|+...        +|...+.+++|+|+++++++++.++.|++    |++.+..
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i----wd~~~~~  107 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL----WDVSNGQ  107 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE----EETTTCC
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE----EECCCCc
Confidence            57799999999999999998887777776443        45578899999999999999999999999    8887766


Q ss_pred             eeEEe---cCceeeEEcCCCcEEEEcCCC-----CeEEEEcC-CCc---EEEEecCC--CccCCCC--CCceeEEEeCCC
Q psy13998         93 VFLAF---TWPRGIAVGPDNSIVVADSSN-----HRVQVFQS-DGT---FVGKFGSM--GNKAGQL--EHPHYIAVSNTN  156 (319)
Q Consensus        93 ~~~~~---~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~-~~~---~~~~~~~~--~~~~~~~--~~~~~l~~~~~g  156 (319)
                      ....+   ..+.+++++|+++.++++..+     +.|.+|+. .+.   ........  .....+.  ..+.++++++++
T Consensus       108 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (369)
T 3zwl_B          108 CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG  187 (369)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred             EEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence            65543   366889999999988888777     99999993 221   11111000  0001122  277899999999


Q ss_pred             eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEe
Q psy13998        157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSF  235 (319)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~  235 (319)
                      +++++++.++.|.+||+...     +..+..+      ..+...+.+++++|+++++++++.++.|++||. +++.+..+
T Consensus       188 ~~l~~~~~dg~i~i~d~~~~-----~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          188 KYIIAGHKDGKISKYDVSNN-----YEYVDSI------DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             CEEEEEETTSEEEEEETTTT-----TEEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCC-----cEeEEEE------ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            99999999999999999751     2333333      234456788999999999999999999999996 55666665


Q ss_pred             CCCCCCcccccCcceEEEcCCCcEEEEeCCCC--------------EEEEEc-CCCceEEeecccCCCCCCCCCcceEEE
Q psy13998        236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN--------------RIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAV  300 (319)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~--------------~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~  300 (319)
                      .       ....+..++++|++.++++++.++              .+++|+ ..++.+..+      ..+...+.+++|
T Consensus       257 ~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~v~~~~~  323 (369)
T 3zwl_B          257 E-------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV------QGHFGPLNTVAI  323 (369)
T ss_dssp             E-------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE------ECCSSCEEEEEE
T ss_pred             c-------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe------ecccCcEEEEEE
Confidence            2       334578899999999888888777              899999 467777777      567788999999


Q ss_pred             ccCCcEEEEeCCCCeEEeC
Q psy13998        301 MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       301 ~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|+++++++++.|+.|++|
T Consensus       324 s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          324 SPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             CTTSSEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEE
Confidence            9999999999999999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=197.85  Aligned_cols=269  Identities=10%  Similarity=0.089  Sum_probs=204.7

Q ss_pred             cccccccCCCccch-hccccceeeeecccCC----CCCc------------------------CCCCcceEEcCCCcEEE
Q psy13998         21 VSGIGQVGTTPRSQ-YLQKRRLQFKIGSRGS----EPGC------------------------FTWPRGIAVGPDNSIVV   71 (319)
Q Consensus        21 ~~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~----~~~~------------------------~~~~~~v~~~~~g~~~~   71 (319)
                      ...|.+++|+|++. +++++..+..+..|..    ..+.                        ...+.+++|+|++++++
T Consensus        45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  124 (425)
T 1r5m_A           45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV  124 (425)
T ss_dssp             CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred             cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence            36799999999999 9998877776666655    3332                        34789999999999999


Q ss_pred             EeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCc-------
Q psy13998         72 ADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGN-------  139 (319)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~-------  139 (319)
                      +++.++.|++    |+. +......    ...+.+++++|+++.+++++.++.|++|+ .+++.+..+.....       
T Consensus       125 ~~~~dg~i~i----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          125 TGVENGELRL----WNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             EEETTSCEEE----EET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             EEeCCCeEEE----EeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            9999999999    874 3333332    33678999999999999999999999999 45655554432111       


Q ss_pred             -------------------------------------------cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998        140 -------------------------------------------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus       140 -------------------------------------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                                                                 ...+...+.+++++|+++++++++.++.|++|++...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred             ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                                                       0123455677888888888888888888888887642


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                            +.+..+      ..+...+.+++++|++ ++++++.++.|++||. +++.+..+      ..+...+.+++++|
T Consensus       280 ------~~~~~~------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          280 ------NSQNCF------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS------IVDGVPIFAGRISQ  340 (425)
T ss_dssp             ------SCSEEE------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE------ECTTCCEEEEEECT
T ss_pred             ------ccceEe------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec------ccCCccEEEEEEcC
Confidence                  333333      2344567889999998 8888888999999996 55666665      44555788999999


Q ss_pred             CCcEEEEeCCCCEEEEEcC-CCc--------------------eEEeecccCCCCCCCC--CcceEEEccCCcEEEEeCC
Q psy13998        256 QGYISVGDSGNNRIQIFTP-DGQ--------------------FLRAFGCWGSGDGEFK--GLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~~-~g~--------------------~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~v~~~~  312 (319)
                      +++++++++.++.|++|+. .++                    .+..+      ..+..  .+.+++|+|+++++++++.
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY------QSSQDNDYIFDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE------CCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred             CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh------cCcccCCceEEEEccCCCceEEEEec
Confidence            9999999999999999994 344                    56666      45544  8999999999999999999


Q ss_pred             CCeEEeC
Q psy13998        313 NHRIQVF  319 (319)
Q Consensus       313 ~~~i~v~  319 (319)
                      |+.|++|
T Consensus       415 dg~i~iw  421 (425)
T 1r5m_A          415 LQEGSVV  421 (425)
T ss_dssp             SSCCEEE
T ss_pred             CceEEEE
Confidence            9999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=1.1e-26  Score=190.53  Aligned_cols=237  Identities=15%  Similarity=0.243  Sum_probs=185.1

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----------------------CceeeEEcCCCc
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----------------------WPRGIAVGPDNS  110 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~g~  110 (319)
                      +|...+.+++|+|+|+++++++ ++.+++    |+..++.....+.                      .+.+++|+|+|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i----~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQV----YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEE----EETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEE----EEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            3667899999999999999876 689999    8877665544322                      257899999999


Q ss_pred             EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998        111 IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG  189 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  189 (319)
                      ++++++.++.|++|| .+++.+..+      .+|...+.+++++|+++.+++++.|+.|++||+...      +....+.
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~  204 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMIL------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTLS  204 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEE------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------eeEEEEE
Confidence            999999999999999 556666666      567778899999999999999999999999998753      3332221


Q ss_pred             ccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC-CCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998        190 SMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG-SEEGQLKFPRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~~~v~~~~~  266 (319)
                             ....+..++++| +++++++++.++.|++||. .+..+..+.... ...++...+.+++|+|+|+++++++.|
T Consensus       205 -------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          205 -------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             -------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence                   123467889998 8899999999999999996 455555552211 113455678999999999999999999


Q ss_pred             CEEEEEcCCC-------------ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        267 NRIQIFTPDG-------------QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       267 ~~i~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.|++||...             .....+      .+|...+.++++++++.++++++.|+.|++|
T Consensus       278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKTPNSGTCEVTY------IGHKDFVLSVATTQNDEYILSGSKDRGVLFW  337 (393)
T ss_dssp             SEEEEEEC---------------CEEEEE------ECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCCCcccccCCCCCcceEEE------ecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            9999999532             122233      4577789999999999999999999999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=2.7e-27  Score=190.72  Aligned_cols=237  Identities=14%  Similarity=0.249  Sum_probs=184.6

Q ss_pred             CCCCCcCCCCcceEE-----cC-CCcEEEEeCCCCeEEEeccccccccce-------eeE----EecCceeeEEcCCCcE
Q psy13998         49 GSEPGCFTWPRGIAV-----GP-DNSIVVADSSNHRVQVCFPHFDLKTNC-------VFL----AFTWPRGIAVGPDNSI  111 (319)
Q Consensus        49 ~~~~~~~~~~~~v~~-----~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~~~g~~  111 (319)
                      ....||...|.++++     ++ +++++++++.|++|++    |+..+..       ...    +...+.+++++|++.+
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~i----Wd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMI----WKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEE----EEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEE----EECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            344678899999999     66 8999999999999999    7765321       111    2336789999999999


Q ss_pred             EEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998        112 VVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS  190 (319)
Q Consensus       112 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  190 (319)
                      +++++.|+.|++|| .+++.+..+      .+|...+.+++++|+++++++++.++.|++||+.+..       ..... 
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~-  156 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRF------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-------KFSSA-  156 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEE------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-------EEECC-
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEE------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-------eeeee-
Confidence            99999999999999 667777776      4567788999999999999999999999999987531       11110 


Q ss_pred             cCCcCCCCCCceeEEEcCCC----------cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998        191 MGNKAGQLEHPHYIAVSNTN----------RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYIS  260 (319)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~g----------~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~  260 (319)
                        ....+...+.+++++|++          .++++++.++.|++||.+++....+      ..+...+.+++|+|+|+++
T Consensus       157 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~h~~~v~~~~~s~~g~~l  228 (343)
T 2xzm_R          157 --EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF------KAHESNVNHLSISPNGKYI  228 (343)
T ss_dssp             --TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE------ECCSSCEEEEEECTTSSEE
T ss_pred             --cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE------cCccccceEEEECCCCCEE
Confidence              012344567788888876          6889999999999999877766666      5566678999999999999


Q ss_pred             EEeCCCCEEEEEcC-CC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        261 VGDSGNNRIQIFTP-DG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       261 v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++.|+.|++||. .. .....+       .+...+.+++|+|++.+++++ .|+.|++|
T Consensus       229 ~sgs~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw  281 (343)
T 2xzm_R          229 ATGGKDKKLLIWDILNLTYPQREF-------DAGSTINQIAFNPKLQWVAVG-TDQGVKIF  281 (343)
T ss_dssp             EEEETTCEEEEEESSCCSSCSEEE-------ECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred             EEEcCCCeEEEEECCCCcccceee-------cCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence            99999999999996 32 233333       123458999999999877655 56778887

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=191.55  Aligned_cols=236  Identities=11%  Similarity=0.131  Sum_probs=175.7

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc-------cc--------eeeEEecCceeeEEcCCCcEEEEcCCC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK-------TN--------CVFLAFTWPRGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~-------~~--------~~~~~~~~~~~l~~~~~g~~~~~~~~~  118 (319)
                      +...+.+++|+|||+++++++ +.++++    |+..       ..        ....+-..+.+++|++++. +++++.+
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~----Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~d  102 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRC----WAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDS  102 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSC----CCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETT
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEE----eeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECC
Confidence            345678999999999988876 556666    4321       00        0111223578999999865 5677889


Q ss_pred             CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +.|++|| .+++........  ..+|...+.+++|+|+|+++++++.++.|++||+...      +.+..+      .+|
T Consensus       103 g~v~lWd~~~~~~~~~~~~~--~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------~~~~~~------~~h  168 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFC--KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------VVLSSY------RAH  168 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEE------CCC
T ss_pred             CEEEEEeccCCCceeEeecc--ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------cEEEEE------cCc
Confidence            9999999 455433222110  0356778899999999999999999999999999843      555555      456


Q ss_pred             CCCceeEEEcCCC-cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEc-
Q psy13998        198 LEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFT-  273 (319)
Q Consensus       198 ~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~-  273 (319)
                      ...+.++++++++ .++++++.|+.|++||. .++....+..    ..+...+.+++++|+ ++++++++.|+.|++|| 
T Consensus       169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             CCceEEEEecCCCCCceeeeccccccccccccccceeeeeec----ceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            6778899999987 58889999999999996 5666655522    122335788999986 57899999999999999 


Q ss_pred             CCCceEEeecccCCCCCCCCCcceEEEccCC-cEEEEeCCCCeEEeC
Q psy13998        274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG-NILVCDRENHRIQVF  319 (319)
Q Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~v~~~~~~~i~v~  319 (319)
                      .+++.+..+      .+|...+++++|+|+| +++++++.|+.|++|
T Consensus       245 ~~~~~~~~~------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw  285 (344)
T 4gqb_B          245 KSTSCVLSS------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL  285 (344)
T ss_dssp             CC--CCEEE------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             CCCcEEEEE------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence            467777777      6788899999999998 489999999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=1.9e-27  Score=193.69  Aligned_cols=278  Identities=10%  Similarity=0.078  Sum_probs=208.4

Q ss_pred             hcccccccCCCccchhccccceeeeecccCCCC----------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc
Q psy13998         20 LVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK   89 (319)
Q Consensus        20 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~   89 (319)
                      ....|.+++|+|++.+++.+..+..+..|+...          +|...+.+++|+|+++++++++.++.|++    |+..
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v----wd~~   82 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV----WTLK   82 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE----EEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE----EECC
Confidence            467899999999999999887676666664332          45577899999999999999999999999    8886


Q ss_pred             cceeeE------EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc---EEEEecCCCccCCCCCCceeEEEeCCCeEE
Q psy13998         90 TNCVFL------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVI  159 (319)
Q Consensus        90 ~~~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  159 (319)
                      +.....      +...+.+++++++++++++++.++.|.+|+. .+.   ....+.     ..+...+.+++++|+++++
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-----TTCCSCEEEEEECTTSSEE
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-----cccCCCeeEEEEcCCCCEE
Confidence            655322      2236789999999999999999999999993 333   122221     3345678999999999999


Q ss_pred             EEeCCCCEEEEEecCCceee------------ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQ------------SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~  227 (319)
                      ++++.++.|++||+......            ..++.+..+      ..+...+.+++++|+++++++++.++.|++||.
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES------SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC------CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEec------CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            99999999999996421100            112333333      244556889999999999999999999999996


Q ss_pred             -CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC---Cce--EEeecc-----------------
Q psy13998        228 -NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD---GQF--LRAFGC-----------------  284 (319)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~---g~~--~~~~~~-----------------  284 (319)
                       +++.+..+      ..+...+.+++++|++.+++++ .++.|++|+..   |+.  +..+..                 
T Consensus       232 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          232 DKKMAVATL------ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             GGTTEEEEE------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             CCCceeEEE------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence             67777777      4455568899999999988887 88999999953   321  100000                 


Q ss_pred             --------------cCCCCCCCCCcceEEEc-cCC---cEEEEeCCCCeEEeC
Q psy13998        285 --------------WGSGDGEFKGLEGVAVM-SNG---NILVCDRENHRIQVF  319 (319)
Q Consensus       285 --------------~~~~~~~~~~~~~l~~~-~~g---~~~v~~~~~~~i~v~  319 (319)
                                    .....+|...+.++++. ++|   .++++++.|+.|++|
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW  357 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEE
Confidence                          00113677889999866 676   899999999999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=5.2e-28  Score=197.91  Aligned_cols=272  Identities=9%  Similarity=0.078  Sum_probs=202.8

Q ss_pred             cccccccCCCccc-hhccccceeeeecccCCCC----------CcCCCCcceEEcC-CCcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRS-QYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ...|.+++|+|++ .+++++..+..+.+|+...          +|...+.+++|+| +++++++++.|+.|++    |+.
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i----wd~  148 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL----RDF  148 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE----EET
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE----EEC
Confidence            4678999999998 8999998887777775542          4667889999999 7789999999999999    888


Q ss_pred             ccceeeEEe-------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEE
Q psy13998         89 KTNCVFLAF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIV  160 (319)
Q Consensus        89 ~~~~~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~  160 (319)
                      .+.. ...+       ..+.+++++|+++++++++.++.|++||.+++.+..+      ..+...+.+++++|++. +++
T Consensus       149 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          149 SGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE------KLHKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             TSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE------ECSSSCEEEEEECSSCTTEEE
T ss_pred             CCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe------ccCCCcEEEEEECCCCCCEEE
Confidence            6432 2222       3468999999999999999999999999888887777      45667889999999998 899


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCC
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSE  238 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~  238 (319)
                      +++.++.|++||+....  ..+..+..+       .+...+.+++++| ++.++++++.++.|++||.. +.....+...
T Consensus       222 s~~~d~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  292 (383)
T 3ei3_B          222 TSSVDATVKLWDLRNIK--DKNSYIAEM-------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH  292 (383)
T ss_dssp             EEETTSEEEEEEGGGCC--STTCEEEEE-------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred             EEeCCCEEEEEeCCCCC--cccceEEEe-------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence            99999999999987410  012333332       2445678999999 99999999999999999963 3332222110


Q ss_pred             C-CCccccc----------CcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcE
Q psy13998        239 G-SEEGQLK----------FPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNI  306 (319)
Q Consensus       239 ~-~~~~~~~----------~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~  306 (319)
                      . ....+..          ....++++|+|++  +++.++.|++|| .+++.+..+..    ..+...+..++|+|+|++
T Consensus       293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~----~~~~~~~~~~~~s~~g~~  366 (383)
T 3ei3_B          293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD----PNAAGIISLNKFSPTGDV  366 (383)
T ss_dssp             CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB----TTBCSCCCEEEECTTSSE
T ss_pred             cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC----CCCCceEEEEEEecCccE
Confidence            0 0001111          1223556666665  667899999999 46888877732    123455677799999999


Q ss_pred             EEEeCCCCeEEeC
Q psy13998        307 LVCDRENHRIQVF  319 (319)
Q Consensus       307 ~v~~~~~~~i~v~  319 (319)
                      +++++ |+.|++|
T Consensus       367 l~s~s-d~~i~iw  378 (383)
T 3ei3_B          367 LASGM-GFNILIW  378 (383)
T ss_dssp             EEEEE-TTEEEEE
T ss_pred             EEEec-CCcEEEE
Confidence            99996 8999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=4.6e-27  Score=191.89  Aligned_cols=252  Identities=17%  Similarity=0.234  Sum_probs=191.3

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      ..||...|.+++|+|+|+++++++.|++|++    |+..+......+    ..+.+++|+|+++++++++.++.+.+|+.
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~i----Wd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIV----WNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEE----EETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEE----EECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            3578899999999999999999999999999    888776655533    46788999999999999999999999994


Q ss_pred             CCcE--EEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGTF--VGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      ....  ...........+|...+..+.+.|+ +..+++++.|+.|++||+...      +.+..+... ....+...+.+
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~~-~~~~h~~~v~~  210 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG------QRISIFGSE-FPSGHTADVLS  210 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC------CEEEEECCC-SSSSCCSCEEE
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC------cEEEEeecc-cCCCCccCeEE
Confidence            3211  0000111112456667788888885 467899999999999998743      333333211 11345566788


Q ss_pred             EEEcC-CCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceE
Q psy13998        204 IAVSN-TNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFL  279 (319)
Q Consensus       204 ~~~~~-~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~  279 (319)
                      +++++ +++++++++.++.|++||..  +..+..+      .+|...+.+++|+|+|+++++++.|+.|++||. .++.+
T Consensus       211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence            88876 77999999999999999964  4555666      567778999999999999999999999999994 66666


Q ss_pred             EeecccC-CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        280 RAFGCWG-SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       280 ~~~~~~~-~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+.... ....+...+.+++|+|+|+++++++.|+.|++|
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw  325 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW  325 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence            6653221 112233458899999999999999999999998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=6e-27  Score=184.80  Aligned_cols=239  Identities=12%  Similarity=0.123  Sum_probs=179.4

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeE----EecCceeeEEcCC--CcEEEEcCCCCeEEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQV  123 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~  123 (319)
                      .+|...+.+++|+++|+++++++.|+.|++    |+..+.  ....    |-..+.+++|+++  ++++++++.|+.|++
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~i----w~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKI----FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEE----EEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEE----EecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            467788999999999999999999999999    877532  2222    3346788999864  789999999999999


Q ss_pred             EcC-CCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        124 FQS-DGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       124 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      ||. +++  .+..+      ..|...+.+++++|+  +.++++++.++.|++|+++....    .....+      ..+.
T Consensus        82 Wd~~~~~~~~~~~~------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~------~~h~  145 (297)
T 2pm7_B           82 WKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----TSPIII------DAHA  145 (297)
T ss_dssp             EEBSSSCBCCCEEE------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEE------ECCS
T ss_pred             EEcCCCceEEEEEe------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----eeeeee------eccc
Confidence            994 342  22333      345567899999997  88999999999999999874210    001111      2344


Q ss_pred             CCceeEEEcCC-------------CcEEEEeCCCCeEEEEeCC-CC----EEEEeCCCCCCcccccCcceEEEcCCC---
Q psy13998        199 EHPHYIAVSNT-------------NRVIVSDSNNHRVQIFDVN-GR----VITSFGSEGSEEGQLKFPRGVAVDDQG---  257 (319)
Q Consensus       199 ~~~~~~~~~~~-------------g~~~v~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g---  257 (319)
                      ..+.+++++|+             ++++++++.++.|++||.+ +.    ....+      .+|...+.+++|+|++   
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l------~~H~~~V~~v~~sp~~~~~  219 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL------EGHSDWVRDVAWSPTVLLR  219 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE------CCCSSCEEEEEECCCCSSS
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe------cCCCCceEEEEECCCCCCc
Confidence            56778888886             4689999999999999953 33    34445      5677789999999984   


Q ss_pred             cEEEEeCCCCEEEEEcCCCc---eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        258 YISVGDSGNNRIQIFTPDGQ---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++++++.|+.|++|+.+..   .......   ...+...+.+++|+|+|+++++++.|+.|++|
T Consensus       220 ~~las~s~D~~v~iWd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw  281 (297)
T 2pm7_B          220 SYMASVSQDRTCIIWTQDNEQGPWKKTLLK---EEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (297)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSCCEEEESS---SSCCSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             eEEEEEECCCcEEEEEeCCCCCccceeeee---cccCCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            78999999999999995431   1111110   02345678999999999999999999999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=8e-28  Score=195.10  Aligned_cols=262  Identities=12%  Similarity=0.112  Sum_probs=182.7

Q ss_pred             cccccCCCccchhccccce-------eeeecccCCC------------------CCcCCCCcceEEcCCCcEEEEe----
Q psy13998         23 GIGQVGTTPRSQYLQKRRL-------QFKIGSRGSE------------------PGCFTWPRGIAVGPDNSIVVAD----   73 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~-------~~~~~~~~~~------------------~~~~~~~~~v~~~~~g~~~~~~----   73 (319)
                      .|.+++|+|++.+++++..       +.++..|...                  .++-..|.++++  +++.++++    
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~~   93 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNEN   93 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCCC
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECCC
Confidence            5889999999999998642       1233344221                  233345666655  45555554    


Q ss_pred             -------CCCCeEEEeccccccccceeeE----Ee---------cCceeeEEcCCCcEEE--EcCCCCeEEEEc-CCCcE
Q psy13998         74 -------SSNHRVQVCFPHFDLKTNCVFL----AF---------TWPRGIAVGPDNSIVV--ADSSNHRVQVFQ-SDGTF  130 (319)
Q Consensus        74 -------~~~~~v~~~~~~~~~~~~~~~~----~~---------~~~~~l~~~~~g~~~~--~~~~~~~i~~~~-~~~~~  130 (319)
                             +.++.+++    |+..+.....    ..         ..+..++|+|||++++  +++.++.|++|| .+++.
T Consensus        94 ~~~l~s~~~d~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~  169 (365)
T 4h5i_A           94 STKITQGKGNKHLRK----FKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE  169 (365)
T ss_dssp             HHHHHHTSCCCCEEE----EEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred             ccEEEEecCCCcEEE----EEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence                   34678888    7654332111    11         1356799999998654  455689999999 56666


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      +..+.       +...+.+++|+|+|+++++++.++.+.+|...+.       .+.....    ..+...+.+++++|++
T Consensus       170 ~~~~~-------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~-------~~~~~~~----~~~~~~v~~v~fspdg  231 (365)
T 4h5i_A          170 KFEIE-------TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGS-------CIARKTD----FDKNWSLSKINFIADD  231 (365)
T ss_dssp             EEEEE-------CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCC-------EEEEECC----CCTTEEEEEEEEEETT
T ss_pred             EEEeC-------CCCceEEEEEccCCceEEeccceeEEEEEeccCc-------ceeeeec----CCCCCCEEEEEEcCCC
Confidence            66653       3356799999999999999886655554444432       2211111    2233456789999999


Q ss_pred             cEEEEeCCCC----eEEEEeCCCCEE-----EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEE
Q psy13998        211 RVIVSDSNNH----RVQIFDVNGRVI-----TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLR  280 (319)
Q Consensus       211 ~~~v~~~~~~----~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~  280 (319)
                      .++++++.++    .++.|+......     ..+      .++...+.+++|+|+|+++++++.|+.|++|| .+++.+.
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~  305 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV------TNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK  305 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE------ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CEEEEEecCCcceeEEeecccccceecceeeeee------cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence            9888876555    577888533221     223      34556788999999999999999999999999 4678777


Q ss_pred             eecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+.     .+|...+++++|+|||+++++++.|++||||
T Consensus       306 ~~~-----~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          306 IFK-----QAHSFAITEVTISPDSTYVASVSAANTIHII  339 (365)
T ss_dssp             EET-----TSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             Eec-----CcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            752     4688899999999999999999999999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=3.3e-27  Score=195.53  Aligned_cols=270  Identities=11%  Similarity=0.071  Sum_probs=202.9

Q ss_pred             cccccCCCccchhccccceeeeecccCCCCCcC-------CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL   95 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~   95 (319)
                      .+..++|+|++.+++++..+..+..|+...+..       ..+....++++++++++++.++.|++    |+..+.....
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i----wd~~~~~~~~  133 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV----LDSNFNLQRE  133 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEE----ECTTSCEEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEE----EeCCCcceee
Confidence            345788999999999998888877776554322       22233467899999999999999999    8887666555


Q ss_pred             Ee----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEE
Q psy13998         96 AF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  170 (319)
Q Consensus        96 ~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~  170 (319)
                      .+    ..+.+++++|+++++++++.++.|++|| .+++.+..+      .+|...+.+++++|+++++++++.++.|++
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL------IGHRATVTDIAIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE------ECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            33    3678999999999999999999999999 566666666      456678899999999999999999999999


Q ss_pred             EecCCceeeecCceeeeecccCC------------------cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCE
Q psy13998        171 FDVNGRVFQSDGTFVGKFGSMGN------------------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRV  231 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~  231 (319)
                      ||+...      +.+..+.....                  ...+.....+++++|+++++++++.++.|++||. .++.
T Consensus       208 wd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          208 WECGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ  281 (420)
T ss_dssp             EETTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred             eECCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence            998753      22222211100                  0011234566788899999999999999999996 5555


Q ss_pred             EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCc-eEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998        232 ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQ-FLRAFGCWGSGDGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v  308 (319)
                      ...+.     ..+...+.+++++|++. ++++++.++.|++||. +++ .+..+.     ..+...+..+. .+++++++
T Consensus       282 ~~~~~-----~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~-~~~~~~l~  350 (420)
T 3vl1_A          282 TIQLP-----SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-----INEGTPINNVY-FAAGALFV  350 (420)
T ss_dssp             EEEEC-----CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-----ESTTSCEEEEE-EETTEEEE
T ss_pred             eEEcc-----cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-----ccCCCCceEEE-eCCCCEEE
Confidence            55552     23445688999999998 9999999999999995 443 344442     12344566664 45788999


Q ss_pred             EeCCCCeEEeC
Q psy13998        309 CDRENHRIQVF  319 (319)
Q Consensus       309 ~~~~~~~i~v~  319 (319)
                      +++.|+.|++|
T Consensus       351 s~~~d~~v~iw  361 (420)
T 3vl1_A          351 SSGFDTSIKLD  361 (420)
T ss_dssp             EETTTEEEEEE
T ss_pred             EecCCccEEEE
Confidence            99999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=1.4e-27  Score=196.24  Aligned_cols=283  Identities=12%  Similarity=0.101  Sum_probs=206.9

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------------cCCCCcceEEcCC----C---cEEEEeCCCCeE
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------------CFTWPRGIAVGPD----N---SIVVADSSNHRV   79 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~----g---~~~~~~~~~~~v   79 (319)
                      ...|.+++|+|  .++++++.+..+..|+...+              |...+.+++|+++    |   +++++++.++.|
T Consensus        16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i   93 (397)
T 1sq9_A           16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   93 (397)
T ss_dssp             SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence            56889999998  77888877777777654433              3467889999999    9   999999999999


Q ss_pred             EEecccccccccee-----eEEe---------cCceeeEEc----CCCcE-EEEcCCCCeEEEEcC-C------CcEEE-
Q psy13998         80 QVCFPHFDLKTNCV-----FLAF---------TWPRGIAVG----PDNSI-VVADSSNHRVQVFQS-D------GTFVG-  132 (319)
Q Consensus        80 ~~~~~~~~~~~~~~-----~~~~---------~~~~~l~~~----~~g~~-~~~~~~~~~i~~~~~-~------~~~~~-  132 (319)
                      ++    |+..+...     ...+         ..+.+++++    ++++. +++++.++.|++||. .      ++.+. 
T Consensus        94 ~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  169 (397)
T 1sq9_A           94 LF----YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  169 (397)
T ss_dssp             EE----EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             EE----EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence            99    88765553     3322         567889999    99998 999999999999993 3      33222 


Q ss_pred             ----EecC-CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC---CCCceeE
Q psy13998        133 ----KFGS-MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ---LEHPHYI  204 (319)
Q Consensus       133 ----~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  204 (319)
                          .+.. ......+...+.+++++|++ ++++++.++.|.+||++..      +.+..+...   ..+   ...+.++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~---~~h~~~~~~i~~i  239 (397)
T 1sq9_A          170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL------RPLYNFESQ---HSMINNSNSIRSV  239 (397)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT------EEEEEEECC---C---CCCCCEEEE
T ss_pred             cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC------ceeEEEecc---ccccccCCccceE
Confidence                2210 00002245678999999999 9999999999999999743      344443210   113   4567899


Q ss_pred             EEcCCCcEEEEeCCC---CeEEEEeC-CCCEEEEeCCCCC-------CcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        205 AVSNTNRVIVSDSNN---HRVQIFDV-NGRVITSFGSEGS-------EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       205 ~~~~~g~~~v~~~~~---~~i~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      +++|+++++++++.+   +.|++||. +++.+..+.....       ...+...+.+++++|+++++++++.++.|++|+
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            999999999999888   99999995 5677777621000       000556789999999999999999999999999


Q ss_pred             C-CCceEEeecccCCCCCC---------------CCCcceEEEccCC----------cEEEEeCCCCeEEeC
Q psy13998        274 P-DGQFLRAFGCWGSGDGE---------------FKGLEGVAVMSNG----------NILVCDRENHRIQVF  319 (319)
Q Consensus       274 ~-~g~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~g----------~~~v~~~~~~~i~v~  319 (319)
                      . +++.+..+........+               ...+.+++|+|+|          +++++++.|+.|++|
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw  391 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  391 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence            4 67777777311000033               6789999999998          799999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=1.8e-27  Score=192.54  Aligned_cols=239  Identities=12%  Similarity=0.132  Sum_probs=175.8

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCC------CCeEEEecccccccccee--------eEEecCceeeEEcCCCcEEEEcCC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSS------NHRVQVCFPHFDLKTNCV--------FLAFTWPRGIAVGPDNSIVVADSS  117 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~------~~~v~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~g~~~~~~~~  117 (319)
                      .+|...+.+|+|+|||+++++++.      |+.|++    |+..+...        ..+-..+.+++|+|++.+++ ++.
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~----~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~  113 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWV----FKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASD  113 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEE----ESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EET
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEE----EECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EEC
Confidence            346778999999999999999986      678888    66543321        11334678999999987665 456


Q ss_pred             CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        118 NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       118 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      ++.|++|| .+++.......  ...+|...+.+++++|+++++++++.++.|++||....      +.+..+      ..
T Consensus       114 dg~v~lWd~~~~~~~~~~~~--~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~------~~~~~~------~~  179 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKF--AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK------AVLKSY------NA  179 (357)
T ss_dssp             TSCEEEC--------CCCCE--EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT------EEEEEE------CC
T ss_pred             CCEEEEeeccccceeEEEee--ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------cEEEEE------cC
Confidence            88999999 44443221110  11356678899999999999999999999999998853      444444      34


Q ss_pred             CCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEc
Q psy13998        197 QLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFT  273 (319)
Q Consensus       197 ~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~  273 (319)
                      +...+.++++++++ .++++++.++.|++||.. ++....+..    ..+...+.+++++|++ .++++++.++.|++||
T Consensus       180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd  255 (357)
T 4g56_B          180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNVSLVN  255 (357)
T ss_dssp             CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred             CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee----ccccccccchhhhhcccceEEEeecccceeEEE
Confidence            55678899999887 578888889999999964 443333211    2233457899999984 6888999999999999


Q ss_pred             -CCCceEEeecccCCCCCCCCCcceEEEccCC-cEEEEeCCCCeEEeC
Q psy13998        274 -PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG-NILVCDRENHRIQVF  319 (319)
Q Consensus       274 -~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~v~~~~~~~i~v~  319 (319)
                       .+++.+..+      ..+...+.+++|+|++ +++++++.|+.|++|
T Consensus       256 ~~~~~~~~~~------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw  297 (357)
T 4g56_B          256 IKNPDSAQTS------AVHSQNITGLAYSYHSSPFLASISEDCTVAVL  297 (357)
T ss_dssp             SSCGGGCEEE------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             CCCCcEeEEE------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence             467777777      5677889999999997 488999999999998

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=3.4e-27  Score=187.83  Aligned_cols=238  Identities=12%  Similarity=0.103  Sum_probs=175.8

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eE----EecCceeeEEcC--CCcEEEEcCCCCeEE
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FL----AFTWPRGIAVGP--DNSIVVADSSNHRVQ  122 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~~~~~~l~~~~--~g~~~~~~~~~~~i~  122 (319)
                      ..+|...+.+++|+++|+++++++.|++|++    |++.+...  ..    |-..+.+++|++  +++++++++.|+.|+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~l----wd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKI----FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEE----EEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEE----EEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            3577889999999999999999999999999    88865432  22    234678899976  378999999999999


Q ss_pred             EEcC-CCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        123 VFQS-DGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       123 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +||. +++  ....+      .+|...+.+++++|+  +.++++++.|+.|++|+..+....   .....+      ..+
T Consensus        85 iWd~~~~~~~~~~~~------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~---~~~~~~------~~h  149 (316)
T 3bg1_A           85 IWREENGTWEKSHEH------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW---EVKKIN------NAH  149 (316)
T ss_dssp             EECCSSSCCCEEEEE------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---EECCBT------TSS
T ss_pred             EEECCCCcceEEEEc------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---ceeeee------ccc
Confidence            9994 442  34444      456677899999997  789999999999999998742100   001111      233


Q ss_pred             CCCceeEEEcCC-----------------CcEEEEeCCCCeEEEEeCCCC----EEEEeCCCCCCcccccCcceEEEcCC
Q psy13998        198 LEHPHYIAVSNT-----------------NRVIVSDSNNHRVQIFDVNGR----VITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       198 ~~~~~~~~~~~~-----------------g~~~v~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                      .....+++++|+                 ++++++++.++.|++||....    ....+      .+|...+.+++|+|+
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l------~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL------EAHSDWVRDVAWAPS  223 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC------BCCSSCEEEEECCCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec------ccCCCceEEEEecCC
Confidence            445566777775                 468899999999999996532    33333      456677899999998


Q ss_pred             C----cEEEEeCCCCEEEEEcCCC----c-eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        257 G----YISVGDSGNNRIQIFTPDG----Q-FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       257 g----~~~v~~~~~~~i~~~~~~g----~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +    .++++++.|++|++|+.+.    + ....+      ..+...+++++|+|+|+++++++.|+.|++|
T Consensus       224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL------HKFNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE------EECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             CCCCCceEEEEcCCCeEEEEEccCccccchhhhhh------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            6    7899999999999999543    1 11122      2345679999999999999999999999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.1e-27  Score=195.96  Aligned_cols=288  Identities=15%  Similarity=0.170  Sum_probs=207.3

Q ss_pred             hhhhhhhh-h--cccccccCCCc-cchhccccceeeeecccCCCC-------------CcCCCCcceEEcCCCcEEEEeC
Q psy13998         12 SCFLLQTL-L--VSGIGQVGTTP-RSQYLQKRRLQFKIGSRGSEP-------------GCFTWPRGIAVGPDNSIVVADS   74 (319)
Q Consensus        12 ~~~~~~~~-~--~~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~g~~~~~~~   74 (319)
                      +++++..+ .  ...|.+++|+| ++.++++++.+..+..|+...             +|...+.+++|+|+++++++++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe
Confidence            34455555 2  57899999999 999999998888877775322             3456789999999999999999


Q ss_pred             CCCeEEEeccccccc---cceeeEE--------e--------cCceeeE--EcCCCcEEEEcCCCCeEEEEc-CCCcEEE
Q psy13998         75 SNHRVQVCFPHFDLK---TNCVFLA--------F--------TWPRGIA--VGPDNSIVVADSSNHRVQVFQ-SDGTFVG  132 (319)
Q Consensus        75 ~~~~v~~~~~~~~~~---~~~~~~~--------~--------~~~~~l~--~~~~g~~~~~~~~~~~i~~~~-~~~~~~~  132 (319)
                      .|+.|++    |++.   +......        +        ..+.++.  +++++.++++++.++.|++|| .+++.+.
T Consensus       131 ~dg~i~v----wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          131 KDGQIIV----LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             TTSEEEE----EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEE----EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            9999999    7773   2222211        1        1123333  457788999999999999999 5777777


Q ss_pred             EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc----C
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS----N  208 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  208 (319)
                      .+...    .+...+.+++++|+++++++++.++.|++||++..      +.+..+..     .+...+.+++++    +
T Consensus       207 ~~~~~----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~-----~~~~~v~~~~~~~~~s~  271 (437)
T 3gre_A          207 IIENS----PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWSF-----GDHAPITHVEVCQFYGK  271 (437)
T ss_dssp             EEECC----GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEBC-----TTCEEEEEEEECTTTCT
T ss_pred             EEccC----CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEec-----CCCCceEEEEeccccCC
Confidence            76321    15568899999999999999999999999999743      44443321     223346777554    4


Q ss_pred             CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC------------------Cc--ccccCcceEEEcCCCcEEEEeCCCC
Q psy13998        209 TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS------------------EE--GQLKFPRGVAVDDQGYISVGDSGNN  267 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~------------------~~--~~~~~~~~i~~~~~g~~~v~~~~~~  267 (319)
                      ++.++++++.++.|++||. +++.+..+.....                  ..  .+...+.+++++ +++++++++.|+
T Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~  350 (437)
T 3gre_A          272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS  350 (437)
T ss_dssp             TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred             CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence            6789999999999999996 4665555532110                  01  144557889999 778999999999


Q ss_pred             EEEEEcC-CCceEEeeccc-------------------------------CCCCCCCCCcceEEEccC--CcEEEEeCCC
Q psy13998        268 RIQIFTP-DGQFLRAFGCW-------------------------------GSGDGEFKGLEGVAVMSN--GNILVCDREN  313 (319)
Q Consensus       268 ~i~~~~~-~g~~~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~~--g~~~v~~~~~  313 (319)
                      .|++|+. +++.+..+...                               .....|...+.++++.++  +.++++++.|
T Consensus       351 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d  430 (437)
T 3gre_A          351 SIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS  430 (437)
T ss_dssp             EEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred             eEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence            9999994 55544444210                               001126778999999987  6799999999


Q ss_pred             CeEEeC
Q psy13998        314 HRIQVF  319 (319)
Q Consensus       314 ~~i~v~  319 (319)
                      |.|++|
T Consensus       431 G~I~iw  436 (437)
T 3gre_A          431 GLIGIF  436 (437)
T ss_dssp             SCEEEE
T ss_pred             ceEEEe
Confidence            999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=1.6e-25  Score=182.39  Aligned_cols=237  Identities=11%  Similarity=0.102  Sum_probs=187.4

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      |-..+.+++|+|+|+++++++.++.|++    |+..+..  ....+    ..+.+++++|+++++++++.++.|++|+ .
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHI----YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEE----EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEE----EeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            4567899999999999999999999999    8887664  33333    3678999999999999999999999999 4


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +++.......    ..+...+.+++++++++++++++.++.|.+|+++....   ........     ..+...+.++++
T Consensus        83 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~-----~~~~~~i~~~~~  150 (372)
T 1k8k_C           83 GRTWKPTLVI----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND---WWVCKHIK-----KPIRSTVLSLDW  150 (372)
T ss_dssp             TTEEEEEEEC----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT---EEEEEEEC-----TTCCSCEEEEEE
T ss_pred             CCeeeeeEEe----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc---ceeeeeee-----cccCCCeeEEEE
Confidence            5543333321    23456789999999999999999999999999874310   00111111     234566889999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-------------------CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-------------------NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN  267 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~  267 (319)
                      +|+++++++++.++.|++||.                   .++.+..+      ..+...+.+++++|+++++++++.++
T Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~  224 (372)
T 1k8k_C          151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES------SSSCGWVHGVCFSANGSRVAWVSHDS  224 (372)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC------CCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec------CCCCCeEEEEEECCCCCEEEEEeCCC
Confidence            999999999999999999994                   35566665      45556789999999999999999999


Q ss_pred             EEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        268 RIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       268 ~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .|++|+. +++.+..+      ..+...+.+++++|++++++++ .|+.|++|
T Consensus       225 ~i~i~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~  270 (372)
T 1k8k_C          225 TVCLADADKKMAVATL------ASETLPLLAVTFITESSLVAAG-HDCFPVLF  270 (372)
T ss_dssp             EEEEEEGGGTTEEEEE------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred             EEEEEECCCCceeEEE------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEE
Confidence            9999994 68888877      4666789999999999988888 88999887

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=2e-26  Score=187.13  Aligned_cols=278  Identities=10%  Similarity=0.086  Sum_probs=199.7

Q ss_pred             cccccccCCCcc----chhccccceeeeecccCCCCC-------------cCCCCcceEEcCC----CcEEEEeCCCCeE
Q psy13998         21 VSGIGQVGTTPR----SQYLQKRRLQFKIGSRGSEPG-------------CFTWPRGIAVGPD----NSIVVADSSNHRV   79 (319)
Q Consensus        21 ~~~i~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~----g~~~~~~~~~~~v   79 (319)
                      ...|.+++|+|.    ...+........+..|....+             +...+.+++|+++    |+++++++.++.|
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i   97 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII   97 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence            568899999984    223333333334555543322             2356889999998    6799999999999


Q ss_pred             EEeccccccccceeeEEe----cCceeeEEcC-CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998         80 QVCFPHFDLKTNCVFLAF----TWPRGIAVGP-DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS  153 (319)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (319)
                      ++    |+..+......+    ..+.+++++| +++++++++.++.|++|| .+++.+..+...   ..+...+.+++++
T Consensus        98 ~v----~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~  170 (366)
T 3k26_A           98 RI----INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV---EGHRDEVLSADYD  170 (366)
T ss_dssp             EE----ECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST---TSCSSCEEEEEEC
T ss_pred             EE----EEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc---ccccCceeEEEEC
Confidence            99    888766655533    3678999999 889999999999999999 556666665321   2455778999999


Q ss_pred             CCCeEEEEeCCCCEEEEEecCCceee----------ecCceee------eecccCCcCCCCCCceeEEEcCCCcEEEEeC
Q psy13998        154 NTNRVIVSDSNNHRVQIFDVNGRVFQ----------SDGTFVG------KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS  217 (319)
Q Consensus       154 ~~g~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~  217 (319)
                      |+++++++++.++.|++||++.....          +++....      ..........+...+.+++++  ++++++++
T Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  248 (366)
T 3k26_A          171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS  248 (366)
T ss_dssp             TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred             CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence            99999999999999999999753210          0000000      000000112255667888887  67899999


Q ss_pred             CCCeEEEEeCC-CC--------------EEEEeCCCCCCcccccCcceEEEcCC--CcEEEEeCCCCEEEEEcCC-Cc--
Q psy13998        218 NNHRVQIFDVN-GR--------------VITSFGSEGSEEGQLKFPRGVAVDDQ--GYISVGDSGNNRIQIFTPD-GQ--  277 (319)
Q Consensus       218 ~~~~i~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~i~~~~~--g~~~v~~~~~~~i~~~~~~-g~--  277 (319)
                      .++.|++||.. +.              .+..+      ..+...+..++++|+  ++++++++.++.|++|+.. ++  
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRF------DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE------ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheeccc------cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence            99999999953 22              23333      344556788999999  9999999999999999954 33  


Q ss_pred             --eEEeecccCCCCCC--CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 --FLRAFGCWGSGDGE--FKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 --~~~~~~~~~~~~~~--~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                        ....+      ..+  ...+.+++|+|+++++++++.|+.|++|
T Consensus       323 ~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  362 (366)
T 3k26_A          323 KAKCTTL------THHKCGAAIRQTSFSRDSSILIAVCDDASIWRW  362 (366)
T ss_dssp             GCEEEEE------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccceEE------cccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence              33344      333  5789999999999999999999999998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.6e-26  Score=181.18  Aligned_cols=236  Identities=13%  Similarity=0.171  Sum_probs=176.8

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeE------EecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFL------AFTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      .+|...+.+++++++  ++++++.|+.|++    |+..+.  ....      +...+.+++|+|+++++++++.++.|++
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~l----w~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i   84 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKL----VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI   84 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEE----EECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEE----EEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            367788999999987  8999999999999    777543  2222      2235789999999999999999999999


Q ss_pred             EcCCC--------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998        124 FQSDG--------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA  195 (319)
Q Consensus       124 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
                      |+...        +.+..+      .+|...+.+++|+|+++++++++.|+.|++||++...  ...+.+..+      .
T Consensus        85 w~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~--~~~~~~~~~------~  150 (330)
T 2hes_X           85 WAKEESADRTFEMDLLAII------EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG--EEYECISVL------Q  150 (330)
T ss_dssp             EEC-------CCCEEEEEE------C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC--CCCEEEEEE------C
T ss_pred             EEcccCcCccccceeEEEE------cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC--CCeEEEEEe------c
Confidence            99532        233334      4677788999999999999999999999999984210  011222333      3


Q ss_pred             CCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-C--CEEEEeCCCCCCcccccCcceEEEcCC--CcEEEEeCCCCEEE
Q psy13998        196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-G--RVITSFGSEGSEEGQLKFPRGVAVDDQ--GYISVGDSGNNRIQ  270 (319)
Q Consensus       196 ~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~~~--g~~~v~~~~~~~i~  270 (319)
                      .+...+.+++++|++.++++++.++.|++|+.. +  +.+..+      .+|...+.+++|+|+  +.++++++.|+.|+
T Consensus       151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~  224 (330)
T 2hes_X          151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR  224 (330)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE------CCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence            455678899999999999999999999999953 3  345555      566677899999998  67899999999999


Q ss_pred             EEcCCC---------ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        271 IFTPDG---------QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       271 ~~~~~g---------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|+..+         .....+.     ..|...+.+++|++++ ++++++.|+.|++|
T Consensus       225 iw~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw  276 (330)
T 2hes_X          225 VWKYMGDDEDDQQEWVCEAILP-----DVHKRQVYNVAWGFNG-LIASVGADGVLAVY  276 (330)
T ss_dssp             EEEEEEECTTSCEEEEEEEECC-----SCCSSCEEEEEECTTS-CEEEEETTSCEEEE
T ss_pred             EEEecCCCccccceeEEeeecc-----cccccceEEEEEcCCC-EEEEEeCCCEEEEE
Confidence            999532         1222221     1266789999999765 78888999999998

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=3.1e-25  Score=182.55  Aligned_cols=252  Identities=10%  Similarity=0.142  Sum_probs=193.8

Q ss_pred             chhccccceeeeecccCCCCC---------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----C
Q psy13998         33 SQYLQKRRLQFKIGSRGSEPG---------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----W   99 (319)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~   99 (319)
                      +..+..+..+..+..|+...+         |...+.+++|+|+++++++++.++.|++    |+..+......+.    .
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i----wd~~~~~~~~~~~~~~~~  178 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI----YDVESQTKLRTMAGHQAR  178 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE----EETTTCCEEEEECCCSSC
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE----EECcCCeEEEEecCCCCc
Confidence            345666666777777765544         3456889999999999999999999999    8887766665443    5


Q ss_pred             ceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998        100 PRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus       100 ~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      +.++++  +++++++++.++.|.+||..  +.....+      ..+...+.+++++|+++++++++.++.|++||+... 
T Consensus       179 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-  249 (401)
T 4aez_A          179 VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL------QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-  249 (401)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-
T ss_pred             eEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-
Confidence            677888  45788999999999999943  4555555      456678899999999999999999999999999842 


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeC--CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDS--NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~--~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                           +.+..+      ..+...+.+++++|++ .++++++  .++.|++||. +++.+..+.       +...+.++++
T Consensus       250 -----~~~~~~------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-------~~~~v~~~~~  311 (401)
T 4aez_A          250 -----IPKFTK------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-------AGSQVTSLIW  311 (401)
T ss_dssp             -----SEEEEE------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-------CSSCEEEEEE
T ss_pred             -----CccEEe------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-------CCCcEEEEEE
Confidence                 333333      3345667899999976 6777755  6999999996 566666652       2345889999


Q ss_pred             cCCCcEEEE--eCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        254 DDQGYISVG--DSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       254 ~~~g~~~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|++.++++  +..++.|++|+. +++.......    .++...+.+++++|+|+++++++.|+.|++|
T Consensus       312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw  376 (401)
T 4aez_A          312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI----PAHDTRVLYSALSPDGRILSTAASDENLKFW  376 (401)
T ss_dssp             CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE----ECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred             CCCCCeEEEEeecCCCcEEEEecCCccceeEEEe----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            999988887  558999999994 4444333211    4577789999999999999999999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=2.1e-25  Score=179.82  Aligned_cols=246  Identities=12%  Similarity=0.130  Sum_probs=184.8

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce----eeE----EecCceeeEEcC--CCcEEEEcCCCCeE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC----VFL----AFTWPRGIAVGP--DNSIVVADSSNHRV  121 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~----~~~----~~~~~~~l~~~~--~g~~~~~~~~~~~i  121 (319)
                      .+|...+.+++|+|+++++++++.|+.|++    |+..+..    ...    +...+.+++|++  +++++++++.++.|
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKV----FKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEE----EEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEE----EECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            578889999999999999999999999999    8876542    222    234678999998  58899999999999


Q ss_pred             EEEcC-CC---------cEEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998        122 QVFQS-DG---------TFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG  189 (319)
Q Consensus       122 ~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  189 (319)
                      ++||. .+         +.+..+      ..+...+.+++++|+  ++++++++.++.|++||+........-.......
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTL------NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             EEEecCCCcccccccCcceeeee------cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            99994 33         334444      456677899999998  9999999999999999987432111001111110


Q ss_pred             c-cCCcCCCCCCceeEEEcCC---CcEEEEeCCCCeEEEEeCC-CCE--EEEeCCCCCCcccccCcceEEEcCCC----c
Q psy13998        190 S-MGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDVN-GRV--ITSFGSEGSEEGQLKFPRGVAVDDQG----Y  258 (319)
Q Consensus       190 ~-~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g----~  258 (319)
                      . ......+...+.+++++|+   +.+++++..++.+..++.. +..  +..+      .++...+.+++++|++    +
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~i~~~~~~p~~~~~~~  231 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL------PGHKSLIRSISWAPSIGRWYQ  231 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC------CCCCSCEEEEEECCCSSCSSE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec------CCCCcceeEEEECCCCCCcce
Confidence            0 0111244566788999987   7888888888888777754 333  3333      4566678999999998    8


Q ss_pred             EEEEeCCCCEEEEEcCCC-----------------------------------------------ceEEeecccCCCCCC
Q psy13998        259 ISVGDSGNNRIQIFTPDG-----------------------------------------------QFLRAFGCWGSGDGE  291 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~~~g-----------------------------------------------~~~~~~~~~~~~~~~  291 (319)
                      ++++++.|+.|++|+...                                               +.+..+      .+|
T Consensus       232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h  305 (351)
T 3f3f_A          232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH------DDH  305 (351)
T ss_dssp             EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE------CTT
T ss_pred             EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE------ecc
Confidence            999999999999999432                                               233334      457


Q ss_pred             CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        292 FKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       292 ~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...+++++|+|+++++++++.|+.|++|
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            7789999999999999999999999998

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.95  E-value=1.9e-25  Score=173.84  Aligned_cols=231  Identities=23%  Similarity=0.316  Sum_probs=177.3

Q ss_pred             CCcceEEcCCCcEEE-EeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998         57 WPRGIAVGPDNSIVV-ADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~-~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      .|.+|+++++|++|+ ++..++.|.+    |+..+.....    ....|.+++++++|++|+++. ++.|.+|+.++...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVK----LATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEE----ECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEE----ecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence            899999999999999 7788899999    7664332221    234789999999999999988 88999999877655


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      ..+.     ......|.+++++++|++|+++..++.|.+|+..+..      ... .     .......|.+++++++|+
T Consensus       100 ~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~------~~~-~-----~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B          100 TVLP-----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT------QTV-L-----PFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             EECC-----CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS------CEE-C-----CCCSCCSCCCEEECTTCC
T ss_pred             eeee-----cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce------eEe-e-----ccccCCCceeEEEeCCCC
Confidence            4442     1233578999999999999999888999999754321      111 0     022345688999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCC
Q psy13998        212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE  291 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~  291 (319)
                      +|+++..++.|++|+.++.......     ......|.+|+++++|++|+++..++.|.+|+.++.......     ..+
T Consensus       163 l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-----~~~  232 (270)
T 1rwi_B          163 VYVTDTDNNRVVKLEAESNNQVVLP-----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-----FTG  232 (270)
T ss_dssp             EEEEEGGGTEEEEECTTTCCEEECC-----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-----CCS
T ss_pred             EEEEECCCCEEEEEecCCCceEeec-----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-----cCC
Confidence            9999988899999998776544431     223367899999999999999999999999998776544431     234


Q ss_pred             CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        292 FKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       292 ~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...|.+++++++|++|+++..+++|++|
T Consensus       233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~  260 (270)
T 1rwi_B          233 LNTPLAVAVDSDRTVYVADRGNDRVVKL  260 (270)
T ss_dssp             CSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CCCceeEEECCCCCEEEEECCCCEEEEE
Confidence            4679999999999999999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.4e-25  Score=184.32  Aligned_cols=243  Identities=12%  Similarity=0.143  Sum_probs=187.7

Q ss_pred             cCCCCcceEEcCCCc-EEEEeCCCCeEEEecccccc----ccce------eeEE--------------ecCceeeEEcCC
Q psy13998         54 CFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDL----KTNC------VFLA--------------FTWPRGIAVGPD  108 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~----~~~~------~~~~--------------~~~~~~l~~~~~  108 (319)
                      |...+.+++|+|+|+ ++++++.++.|++    |+.    .+..      ....              ...+.+++|+|+
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARL----ARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEE----EEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEE----EEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            457899999999999 9999999999999    887    5554      1221              226789999999


Q ss_pred             CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee--------
Q psy13998        109 NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS--------  180 (319)
Q Consensus       109 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~--------  180 (319)
                      ++++++++.++.|.+|+.+++.+..+      ..+...+.+++++|+++++++++.++.|.+|++.......        
T Consensus       120 ~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWNKTGALLNVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG  193 (425)
T ss_dssp             SSEEEEEETTSCEEEEETTSCEEEEE------CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeec------cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence            99999999999999999888888877      4566788999999999999999999999999986532110        


Q ss_pred             -----------------------cCce--------eeeeccc-----CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        181 -----------------------DGTF--------VGKFGSM-----GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       181 -----------------------~~~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                                             ++.+        +..+...     .....+...+.+++++|+++++++++.++.|++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI  273 (425)
T ss_dssp             ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence                                   0000        0000000     001234456788999999999999999999999


Q ss_pred             EeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        225 FDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       225 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      |+. .++.+..+      ..+...+.+++++|++ ++++++.++.|++|+. +++.+..+      ..+...+.+++++|
T Consensus       274 ~d~~~~~~~~~~------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          274 WHGGNGNSQNCF------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS------IVDGVPIFAGRISQ  340 (425)
T ss_dssp             ECSSSBSCSEEE------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE------ECTTCCEEEEEECT
T ss_pred             EECCCCccceEe------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec------ccCCccEEEEEEcC
Confidence            996 45555555      4455678899999999 8889999999999994 67777776      45667899999999


Q ss_pred             CCcEEEEeCCCCeEEeC
Q psy13998        303 NGNILVCDRENHRIQVF  319 (319)
Q Consensus       303 ~g~~~v~~~~~~~i~v~  319 (319)
                      +++++++++.++.|++|
T Consensus       341 ~~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             TSSEEEEEETTSCEEEE
T ss_pred             CCCEEEEEECCCeEEEE
Confidence            99999999999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=2.7e-27  Score=193.27  Aligned_cols=276  Identities=7%  Similarity=0.036  Sum_probs=193.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT   90 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~   90 (319)
                      ...|.+++|+|++.+++++..+..+.+|+..          .+|...+.+++|+|+++++++++.|+.|++    |+..+
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v----wd~~~   86 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV----YEKRP   86 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE----C----
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE----EEcCC
Confidence            5679999999999999998777666665433          346678899999999999999999999999    88876


Q ss_pred             ce---eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCC-c---EEEEecCCCccCCCCCCceeEEEeCCCeEE
Q psy13998         91 NC---VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDG-T---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVI  159 (319)
Q Consensus        91 ~~---~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  159 (319)
                      ..   ...    +...+.+++++|+++++++++.++.|++|+... +   ....+.     ..|...+.+++++|+++++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-----RPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-----SSCCSCEEEEEECTTSSEE
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-----cccCCCeEEEEEcCCCCEE
Confidence            55   222    334678999999999999999999999999443 3   234442     1256788999999999999


Q ss_pred             EEeCCCCEEEEEecCCceeee------------cCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQS------------DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~  227 (319)
                      ++++.++.|++||+.......            .++.+..+       .+...+.+++++|+++++++++.++.|++||.
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred             EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            999999999999985321110            01111111       45566889999999999999999999999995


Q ss_pred             C-CCE----EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-Cc--eEEeeccc--------------
Q psy13998        228 N-GRV----ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQ--FLRAFGCW--------------  285 (319)
Q Consensus       228 ~-~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~--~~~~~~~~--------------  285 (319)
                      . ++.    +..+      ..+...+.+++|+|+|+++++++.++.+ +|+.. +.  ....+...              
T Consensus       235 ~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (377)
T 3dwl_C          235 SAPEQPPRALITV------KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE  307 (377)
T ss_dssp             CSTTSCEEECCCE------ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred             CCCCCcceeeEee------cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccc
Confidence            4 443    3333      4455668899999999999998766655 66633 11  01111000              


Q ss_pred             ------------------------------CCCCCCCCCcceEEEccC-Cc---EEEEeCCCCeEEeC
Q psy13998        286 ------------------------------GSGDGEFKGLEGVAVMSN-GN---ILVCDRENHRIQVF  319 (319)
Q Consensus       286 ------------------------------~~~~~~~~~~~~l~~~~~-g~---~~v~~~~~~~i~v~  319 (319)
                                                    .....|...+.++++.++ +.   .+++++.|+.|++|
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iW  375 (377)
T 3dwl_C          308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW  375 (377)
T ss_dssp             CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEe
Confidence                                          001126677888886543 33   69999999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.4e-26  Score=180.24  Aligned_cols=257  Identities=12%  Similarity=0.227  Sum_probs=201.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-   91 (319)
                      ...|.++++ |++.++++++.+..+..|+...+        |...+.+++++|+++++++++.++.|++    |++... 
T Consensus        18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~----~~~~~~~   92 (313)
T 3odt_A           18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING----VPLFATS   92 (313)
T ss_dssp             SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE----EETTCCT
T ss_pred             CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE----EEeeecC
Confidence            577888999 89999999988888877765443        4567899999999999999999999999    655332 


Q ss_pred             --eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC
Q psy13998         92 --CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN  164 (319)
Q Consensus        92 --~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~  164 (319)
                        ....    +...+.++++  +++++++++.++.|.+|| .++....+      ..+...+..+++.+ +++++++++.
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           93 GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNL------QAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEE------ECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEec------ccCCCceeEEEEccCCCCEEEEEEC
Confidence              2222    2235677887  567888899999999999 55555555      34556778899888 8899999999


Q ss_pred             CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcc
Q psy13998        165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEG  243 (319)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~  243 (319)
                      ++.|.+||..        +....+.     ..+...+.++++++++. +++++.++.|++||. +++.+..+      ..
T Consensus       164 d~~i~i~d~~--------~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~------~~  223 (313)
T 3odt_A          164 DKTIKLWQND--------KVIKTFS-----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY------EG  223 (313)
T ss_dssp             TSCEEEEETT--------EEEEEEC-----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE------EC
T ss_pred             CCCEEEEecC--------ceEEEEe-----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh------hc
Confidence            9999999954        2333331     12445678899999988 778888999999996 57777777      45


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +...+.+++++|++. +++++.++.|++|+ .+++.+..+      ..+...+.+++++|+++ +++++.|+.|++|
T Consensus       224 ~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw  292 (313)
T 3odt_A          224 HESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVI------TLPAISIWSVDCMSNGD-IIVGSSDNLVRIF  292 (313)
T ss_dssp             CSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEE------ECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred             CCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEE------eccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence            666789999999985 67788899999999 577777777      45667899999999998 5567889999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=1.6e-25  Score=185.31  Aligned_cols=291  Identities=10%  Similarity=0.034  Sum_probs=204.9

Q ss_pred             hccchhhhhhhhhhc-ccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCC
Q psy13998          7 AKNINSCFLLQTLLV-SGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNH   77 (319)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~   77 (319)
                      .++..++.....+.. ..+....++|++.+++++..+..+..|+..        .+|...+.+++|+|+++++++++.|+
T Consensus        82 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~  161 (420)
T 3vl1_A           82 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDM  161 (420)
T ss_dssp             EEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCC
Confidence            445555555544442 333444678999999998887777777644        35667899999999999999999999


Q ss_pred             eEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC-----------
Q psy13998         78 RVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA-----------  141 (319)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~-----------  141 (319)
                      .|++    |++.+......+    ..+.+++++|+++++++++.++.|++|| .+++.+..+.......           
T Consensus       162 ~i~i----wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  237 (420)
T 3vl1_A          162 QLKI----WSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG  237 (420)
T ss_dssp             EEEE----EETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEEC
T ss_pred             eEEE----EeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecC
Confidence            9999    888766554433    3678999999999999999999999999 5677776664321100           


Q ss_pred             -------CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EE
Q psy13998        142 -------GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VI  213 (319)
Q Consensus       142 -------~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~  213 (319)
                             .+...+.+++++|+++++++++.++.|.+||+...      +.+..+.     ..+...+.+++++|++. ++
T Consensus       238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-----~~~~~~v~~~~~~~~~~~~l  306 (420)
T 3vl1_A          238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------EQTIQLP-----SKFTCSCNSLTVDGNNANYI  306 (420)
T ss_dssp             CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------CEEEEEC-----CTTSSCEEEEEECSSCTTEE
T ss_pred             CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------ceeEEcc-----cccCCCceeEEEeCCCCCEE
Confidence                   01234455666889999999999999999998743      3333321     23445678999999997 99


Q ss_pred             EEeCCCCeEEEEeCC-CC-EEEEeCCCCCCcc-cccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC----ceEEeecccC
Q psy13998        214 VSDSNNHRVQIFDVN-GR-VITSFGSEGSEEG-QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG----QFLRAFGCWG  286 (319)
Q Consensus       214 v~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g----~~~~~~~~~~  286 (319)
                      ++++.++.|++||.. ++ .+..+      .. +...+..+.+ ++++++++++.|+.|++|+...    +.+.......
T Consensus       307 ~~g~~dg~i~vwd~~~~~~~~~~~------~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~  379 (420)
T 3vl1_A          307 YAGYENGMLAQWDLRSPECPVGEF------LINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT  379 (420)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEE------EESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred             EEEeCCCeEEEEEcCCCcCchhhh------hccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCcc
Confidence            999999999999964 32 23444      22 2334455544 5788999999999999999432    1111111111


Q ss_pred             CCCCCCCCcceEEEccCCc---EEEEeCCCCeEEeC
Q psy13998        287 SGDGEFKGLEGVAVMSNGN---ILVCDRENHRIQVF  319 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~---~~v~~~~~~~i~v~  319 (319)
                      ....+...+.+++|+|++.   .+++.+.++.+.+|
T Consensus       380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~  415 (420)
T 3vl1_A          380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY  415 (420)
T ss_dssp             EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred             EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence            1134667899999999998   55555667888887

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=2.2e-25  Score=184.48  Aligned_cols=260  Identities=11%  Similarity=0.153  Sum_probs=193.5

Q ss_pred             cccCCCccchhccccceeeeecccCCCCC----------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee
Q psy13998         25 GQVGTTPRSQYLQKRRLQFKIGSRGSEPG----------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF   94 (319)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (319)
                      ..++||+++ +|+.+ .+.++.+|+...|          |-..|.+|+|+|+|+++++++.|+.|++    |+..+...+
T Consensus       109 ~~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~i----Wd~~~~~~~  182 (420)
T 4gga_A          109 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL----WDVQQQKRL  182 (420)
T ss_dssp             BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEE----EETTTTEEE
T ss_pred             eeEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEE----EEcCCCcEE
Confidence            446666654 44443 4667777765544          3356899999999999999999999999    998877776


Q ss_pred             EEec----CceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEE
Q psy13998         95 LAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV  168 (319)
Q Consensus        95 ~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i  168 (319)
                      ..+.    .+.+++  .++.++++++.++.+.+|+..  ...+..+      .+|...+..+.+.++++++++++.++.+
T Consensus       183 ~~~~~h~~~v~~~s--~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~------~~h~~~~~~~~~~~~g~~l~s~~~D~~v  254 (420)
T 4gga_A          183 RNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATL------SGHSQEVCGLRWAPDGRHLASGGNDNLV  254 (420)
T ss_dssp             EEECCCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEeCCCCceEEEe--eCCCEEEEEeCCCceeEeeecccceeeEEe------cccccceeeeeecCCCCeeeeeeccccc
Confidence            6443    334444  457899999999999999933  3444444      4566778999999999999999999999


Q ss_pred             EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEE--eCCCCeEEEEeC-CCCEEEEeCCCCCCccc
Q psy13998        169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVS--DSNNHRVQIFDV-NGRVITSFGSEGSEEGQ  244 (319)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~--~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~  244 (319)
                      .+|+.......  ...+...      ..+...+.+++++|.+ .++++  ++.|+.|++||. ++.....+.       .
T Consensus       255 ~i~~~~~~~~~--~~~~~~~------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-------~  319 (420)
T 4gga_A          255 NVWPSAPGEGG--WVPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------A  319 (420)
T ss_dssp             EEEESSCCSSC--SCCSEEE------CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-------C
T ss_pred             eEEeecccccc--ceeeeee------cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-------c
Confidence            99998642110  0111111      3344567889999865 55544  457899999996 555555542       2


Q ss_pred             ccCcceEEEcCCCcEEEEe--CCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        245 LKFPRGVAVDDQGYISVGD--SGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       245 ~~~~~~i~~~~~g~~~v~~--~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...+..+.++++++.++++  ..++.|++|| .+++.+..+      .+|...+.+++|+|||+++++++.|++|++|
T Consensus       320 ~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l------~gH~~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            3357788999998766654  3689999999 578888888      6888999999999999999999999999998

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=1e-25  Score=185.66  Aligned_cols=276  Identities=14%  Similarity=0.147  Sum_probs=202.4

Q ss_pred             cccccccCCCc-cchhccccceeeeecccCCCC---------------------CcCCCCcceEEcC-CCcEEEEeCCCC
Q psy13998         21 VSGIGQVGTTP-RSQYLQKRRLQFKIGSRGSEP---------------------GCFTWPRGIAVGP-DNSIVVADSSNH   77 (319)
Q Consensus        21 ~~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~---------------------~~~~~~~~v~~~~-~g~~~~~~~~~~   77 (319)
                      ...|.+++++| ++.+++++..+..+..|+...                     +|...+.+++|+| +++++++++.++
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred             CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence            57899999999 999999988887777775543                     3667889999999 777999999999


Q ss_pred             eEEEeccccccccceeeEEec---CceeeEEcCC---CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeE
Q psy13998         78 RVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPD---NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI  150 (319)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~---g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  150 (319)
                      .|++    |+..+......+.   .+..+.+.+.   +.++++++.++.|.+|| .+++.+..+      ..+...+.++
T Consensus       123 ~i~i----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------~~~~~~v~~~  192 (408)
T 4a11_B          123 TLKV----WDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL------QGHRQEILAV  192 (408)
T ss_dssp             EEEE----EETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE------CCCCSCEEEE
T ss_pred             eEEE----eeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee------cCCCCcEEEE
Confidence            9999    8887766655443   4567788774   45889999999999999 556666666      4566778999


Q ss_pred             EEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeec---------ccCCcCCCCCCceeEEEcCCCcEEEEeCCCC
Q psy13998        151 AVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG---------SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH  220 (319)
Q Consensus       151 ~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~  220 (319)
                      +++|++. ++++++.++.|++||++...     ..+..+.         .......+...+.+++++|+++++++++.++
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  267 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRAS-----GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN  267 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSS-----CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCC-----cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence            9999887 68899999999999987421     1111110         0011134556678999999999999999999


Q ss_pred             eEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEc-CCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998        221 RVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       221 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~-~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      .|++||.. ++.........  ............. ..+..+++...++.|++|+ .+++.+..+      .+|...+.+
T Consensus       268 ~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------~~~~~~v~~  339 (408)
T 4a11_B          268 RMRLWNSSNGENTLVNYGKV--CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML------KGHYKTVDC  339 (408)
T ss_dssp             CEEEEETTTCCBCCCCCCCC--CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE------CCCSSCEEE
T ss_pred             eEEEEECCCCccceeccccc--cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee------ccCCCeEEE
Confidence            99999964 43322221110  0011111112222 2234455556789999999 578888888      678888999


Q ss_pred             EEEccCCcEEEEeCCCCeEEeC
Q psy13998        298 VAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       298 l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++|+|+++++++++.|+.|++|
T Consensus       340 ~~~s~~~~~l~s~~~dg~i~iw  361 (408)
T 4a11_B          340 CVFQSNFQELYSGSRDCNILAW  361 (408)
T ss_dssp             EEEETTTTEEEEEETTSCEEEE
T ss_pred             EEEcCCCCEEEEECCCCeEEEE
Confidence            9999999999999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.2e-25  Score=180.88  Aligned_cols=238  Identities=13%  Similarity=0.123  Sum_probs=182.6

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc--cceeeEE----ecCceeeEEcCC--CcEEEEcCCCCeEEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK--TNCVFLA----FTWPRGIAVGPD--NSIVVADSSNHRVQV  123 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~----~~~~~~l~~~~~--g~~~~~~~~~~~i~~  123 (319)
                      .+|...+.+++|+|+++++++++.++.|++    |+..  +......    ...+.+++|+++  ++++++++.++.|++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKI----FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEE----EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEE----EecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            577889999999999999999999999999    8875  3333332    336788999877  889999999999999


Q ss_pred             Ec-CCCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        124 FQ-SDGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       124 ~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      || .+++  .+..+      ..+...+.+++++|+  +.++++++.++.|.+||+.....    .....+      ..+.
T Consensus        84 wd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~------~~~~  147 (379)
T 3jrp_A           84 WKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIII------DAHA  147 (379)
T ss_dssp             EEEETTEEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEE------ECCT
T ss_pred             EEcCCCceeEeeee------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEe------cCCC
Confidence            99 4454  34444      345677899999998  89999999999999999875310    111111      2344


Q ss_pred             CCceeEEEcC-------------CCcEEEEeCCCCeEEEEeCC-CC----EEEEeCCCCCCcccccCcceEEEcCC---C
Q psy13998        199 EHPHYIAVSN-------------TNRVIVSDSNNHRVQIFDVN-GR----VITSFGSEGSEEGQLKFPRGVAVDDQ---G  257 (319)
Q Consensus       199 ~~~~~~~~~~-------------~g~~~v~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~i~~~~~---g  257 (319)
                      ..+.+++++|             ++.++++++.++.|++||.. +.    ....+      ..+...+.+++++|+   +
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL------EGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE------CCCSSCEEEEEECCCCSSS
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE------ecccCcEeEEEECCCCCCC
Confidence            5678899998             68999999999999999953 32    23344      455667899999999   8


Q ss_pred             cEEEEeCCCCEEEEEcCCC-c---eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        258 YISVGDSGNNRIQIFTPDG-Q---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++++++.++.|++|+... .   .......    ..+...+.+++|+|+|+++++++.|+.|++|
T Consensus       222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKE----EKFPDVLWRASWSLSGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSCCEEEESSS----SCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred             CeEEEEeCCCEEEEEeCCCCCccceeeeecc----ccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            9999999999999999543 2   2222211    3356678999999999999999999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=1.8e-25  Score=186.49  Aligned_cols=290  Identities=11%  Similarity=0.088  Sum_probs=197.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC-------------------CcC------------CCCcceEEcCCC--
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------------------GCF------------TWPRGIAVGPDN--   67 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------~~~------------~~~~~v~~~~~g--   67 (319)
                      .+.|.+++|+|++.+++++..+..+.+|+...                   +|.            ..+.+++|+|++  
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            57899999999999999998877777765332                   343            668999999998  


Q ss_pred             cEEEEeCCCCeEEEeccccccccceee--------------------------------------------EEecCceee
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVF--------------------------------------------LAFTWPRGI  103 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~l  103 (319)
                      .++++++.|+.|++    |+..+....                                            .+...+.++
T Consensus       108 ~~l~s~s~d~~i~i----w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          108 AQFLLSTNDKTIKL----WKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             SEEEEEECSSCEEE----EEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             ceEEEeCCCCeEEE----EecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            78999999999999    776543221                                            123356889


Q ss_pred             EEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecC-CCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceee
Q psy13998        104 AVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGS-MGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       104 ~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      +++|++++++++ .++.|++||..  ++....+.. ......+...+.+++++|++ +++++++.++.|++||++.....
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            999999999988 79999999955  333332211 11123566778999999998 99999999999999998753210


Q ss_pred             ecCceeeeecccCC------cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCc---------
Q psy13998        180 SDGTFVGKFGSMGN------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEE---------  242 (319)
Q Consensus       180 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~---------  242 (319)
                      .  .....+.....      ...+...+.+++++|+++++++++. +.|++||..  ++.+..+.......         
T Consensus       263 ~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          263 D--RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             C--TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             c--ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence            0  00222211100      0011126789999999999998888 999999964  55444442110000         


Q ss_pred             ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCC--------------------------CCCCCCCc
Q psy13998        243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGS--------------------------GDGEFKGL  295 (319)
Q Consensus       243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~--------------------------~~~~~~~~  295 (319)
                      ........++|+|++.++++++.|+.|++||. .++.+........                          .......+
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  419 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI  419 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence            00001234999999999999999999999995 4444331111000                          00123457


Q ss_pred             ceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        296 EGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       296 ~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..++|+|+++++++++.++ +.+|
T Consensus       420 ~~~~~~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          420 LHTAWHPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             CEEEECSSSSEEEEECSSC-EEEE
T ss_pred             eEEEECCCCCEEEEEecce-eeee
Confidence            8899999999999888776 5554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=187.47  Aligned_cols=273  Identities=12%  Similarity=0.153  Sum_probs=195.0

Q ss_pred             cccccccCCCccchh-ccccce---eeeecccCCCCC---------cCCCCcceEEcCC---CcEEEEeCCCCeEEEecc
Q psy13998         21 VSGIGQVGTTPRSQY-LQKRRL---QFKIGSRGSEPG---------CFTWPRGIAVGPD---NSIVVADSSNHRVQVCFP   84 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~-l~~~~~---~~~~~~~~~~~~---------~~~~~~~v~~~~~---g~~~~~~~~~~~v~~~~~   84 (319)
                      ...|.+++|+|++.. +..++.   +..+..|+...+         |...+.+++|+|+   |+++++++.++.|++   
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i---   94 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI---   94 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE---
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE---
Confidence            568999999998854 555554   667777754433         4467899999998   689999999999999   


Q ss_pred             ccccccce-eeEEe----cCceee------EEcCCCcEEEEcCCCCeEEEEcC-CCc-EEEEecCCCccCCCCCCceeEE
Q psy13998         85 HFDLKTNC-VFLAF----TWPRGI------AVGPDNSIVVADSSNHRVQVFQS-DGT-FVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        85 ~~~~~~~~-~~~~~----~~~~~l------~~~~~g~~~~~~~~~~~i~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                       |+..+.. ....+    ..+.++      +++++++++++++.++.|++||. .++ ....+....  ......+.+++
T Consensus        95 -wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~v~~~~  171 (357)
T 3i2n_A           95 -WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ--GENKRDCWTVA  171 (357)
T ss_dssp             -ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT--TSCCCCEEEEE
T ss_pred             -EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC--CCCCCceEEEE
Confidence             8887655 33322    345666      45688999999999999999994 443 444443211  11123566777


Q ss_pred             ----EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC---CCcEEEEeCCCCeEEE
Q psy13998        152 ----VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQI  224 (319)
Q Consensus       152 ----~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~i~~  224 (319)
                          ++++++++++++.++.|.+||++...      ....       ..+...+.+++++|   ++.++++++.++.|++
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMA------LRWE-------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTE------EEEE-------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCc------eeee-------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence                67899999999999999999998642      2211       12335678899999   8899999999999999


Q ss_pred             EeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC-C-------------------ceEEee
Q psy13998        225 FDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD-G-------------------QFLRAF  282 (319)
Q Consensus       225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~-g-------------------~~~~~~  282 (319)
                      ||... +....+... ....+...+.+++++|++. ++++++.++.|++|+.. +                   +.+..+
T Consensus       239 ~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          239 FDMRTQHPTKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEEEEETTTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             EeCcCCCcccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            99542 111111000 0024556789999999987 89999999999999943 2                   233444


Q ss_pred             cccCCCCCCCCCcceEEEccCCcEEE-EeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSNGNILV-CDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~g~~~v-~~~~~~~i~v~  319 (319)
                            ..+...+.+++|+|+|++++ +++.|+.|++|
T Consensus       318 ------~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          318 ------TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             ------ECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             ------ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence                  45777899999999999666 89999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=4.3e-25  Score=175.88  Aligned_cols=264  Identities=11%  Similarity=0.122  Sum_probs=192.7

Q ss_pred             ccccCCCccchhccccceeeeecccCCCCC----------cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         24 IGQVGTTPRSQYLQKRRLQFKIGSRGSEPG----------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        24 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      +..++||+++ +|+.+ .+.++.+|+...+          |-..+.+|+++|+|+++++++.|+.|++    |+..+.+.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~i----w~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL----WDVQQQKR  101 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEE----EETTTTEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEE----eecCCcee
Confidence            4567899876 55554 5677777865544          3356889999999999999999999999    99888777


Q ss_pred             eEEec--CceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998         94 FLAFT--WPRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  169 (319)
Q Consensus        94 ~~~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~  169 (319)
                      +..+.  .....++++++.++++++.++.+..|+..  ...+..+      .++...+..+++.++++++++++.++.|+
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  175 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------SGHSQEVCGLRWAPDGRHLASGGNDNLVN  175 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEE------cCccCceEEEEEcCCCCEEEEEecCccee
Confidence            66443  22334455567889999999999999833  2344444      45667778899999999999999999999


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEE--EEeCCCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVI--VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~--v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  246 (319)
                      +||+.......  ......      ..+...+..+++.+.+ .++  .++..++.|++|+.........      ..+..
T Consensus       176 iwd~~~~~~~~--~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~------~~~~~  241 (318)
T 4ggc_A          176 VWPSAPGEGGW--VPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------VDAHS  241 (318)
T ss_dssp             EEESSCBTTBS--CCSEEE------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE------EECSS
T ss_pred             EEECCCCcccc--cceeee------cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc------cccee
Confidence            99987421100  011111      2233456678888765 443  3556788999999654333332      22334


Q ss_pred             CcceEEEcCCCcEEEE--eCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        247 FPRGVAVDDQGYISVG--DSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~--~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+..+++.+++..+++  +..++.|++|| .+++.+..+      .+|...+++++|+|||+++++++.|+.|++|
T Consensus       242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            5678889998875554  34789999999 578888888      6788999999999999999999999999998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.6e-26  Score=189.81  Aligned_cols=266  Identities=12%  Similarity=0.093  Sum_probs=191.3

Q ss_pred             cccccccCCCccchhccccceeeeec---ccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee--E
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIG---SRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF--L   95 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~--~   95 (319)
                      ...+..++|||+|+++++++.+.++.   ......+|...+..|+|+|+|       .++.+.+    |+.+.....  .
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~----~~~~~~~~~~~~   83 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-------FENKLDF----ELAQQNGLLNSQ   83 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-------CCCTTTT----SCCCSSCSSTTS
T ss_pred             hccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-------CcceEEE----EeCCCceEeecC
Confidence            57899999999999999999888874   112235788899999999999       3444444    443221111  1


Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      +-..+.+++|+|+|+.+++++.++.|++|+..+ .+..+. .. ..-....+.+++|+|+|+++++++.|++|++|++.+
T Consensus        84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~-~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SK-GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CS-SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CC-CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            234679999999999999999999999999555 444442 11 000123578999999999999999999999999986


Q ss_pred             ceeeecCc--eeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEE----EEeCCCCCCcccccCcc
Q psy13998        176 RVFQSDGT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI----TSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       176 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~  249 (319)
                      ..... .+  .+..+...  ..+|...+.+++++|+|  +++++.++.|++|+.++...    ..+.     ..+...+.
T Consensus       161 ~~l~~-~~~i~l~ti~~~--~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-----~~h~~~V~  230 (588)
T 2j04_A          161 NSENT-PEFYFESSIRLS--DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-----NASRRKIT  230 (588)
T ss_dssp             CTTTC-CCCEEEEEEECS--CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-----CCCSSCCC
T ss_pred             Ccccc-ccceeeeeeecc--cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-----ccccCcEE
Confidence            41100 00  12222111  13355788999999999  66777799999999765442    2331     13445689


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEE--ccCCcEEEEeCCCCeEEeC
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV--MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++|+  |+.+++++ ++.|++|+..+.....+.     .+|...+.++++  +||+..++++..+|. ++|
T Consensus       231 svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          231 DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence            99998  57777776 599999997766664442     368888999999  999999999999999 776

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2e-26  Score=188.15  Aligned_cols=232  Identities=9%  Similarity=0.043  Sum_probs=174.2

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DG  128 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~  128 (319)
                      ..+.+++|+|+|+++++++.++.|++    |+..+.  ....    +...+.+++++|+++++++++.++.|++||. ++
T Consensus        12 ~~v~~~~~s~~g~~l~~~~~d~~i~i----w~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTTATNQVEL----YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             SCCSCCEECSSSSEEECCCSSSCBCE----EEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             CcEEEEEECCCCCEEEEecCCCEEEE----EEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            57899999999999999999999999    888765  3332    2346789999999999999999999999994 33


Q ss_pred             c---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        129 T---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       129 ~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      +   ....+      ..+...+.+++++|+++++++++.++.|++|+++....   ......+.     ..+...+.+++
T Consensus        88 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~-----~~h~~~v~~~~  153 (377)
T 3dwl_C           88 GTWKQTLVL------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND---WWVSKHLK-----RPLRSTILSLD  153 (377)
T ss_dssp             -CCCCEEEC------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEEC-----SSCCSCEEEEE
T ss_pred             CceeeeeEe------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc---ceeeeEee-----cccCCCeEEEE
Confidence            3   23333      44667889999999999999999999999999875310   00122221     11556788999


Q ss_pred             EcCCCcEEEEeCCCCeEEEEeCC-------------------CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998        206 VSNTNRVIVSDSNNHRVQIFDVN-------------------GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       206 ~~~~g~~~v~~~~~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~  266 (319)
                      ++|+++++++++.++.|++||..                   ++.+..+       .+...+.+++++|+|+++++++.+
T Consensus       154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTTSSCEEEEETT
T ss_pred             EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCCCCEEEEEeCC
Confidence            99999999999999999999963                   1112111       345568899999999999999999


Q ss_pred             CEEEEEcC-CCce----EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        267 NRIQIFTP-DGQF----LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       267 ~~i~~~~~-~g~~----~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      +.|++|+. +++.    +..+      ..+...+.+++|+|+|+++++++.++.+..
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  277 (377)
T 3dwl_C          227 SSVTIAYPSAPEQPPRALITV------KLSQLPLRSLLWANESAIVAAGYNYSPILL  277 (377)
T ss_dssp             TEEC-CEECSTTSCEEECCCE------ECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred             CcEEEEECCCCCCcceeeEee------cCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence            99999994 4544    4444      467778999999999999999988877644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=2.5e-25  Score=195.45  Aligned_cols=237  Identities=17%  Similarity=0.299  Sum_probs=187.2

Q ss_pred             CCCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccce-----eeE----EecCceeeEEcCCCcEEEEcCCCC
Q psy13998         50 SEPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNC-----VFL----AFTWPRGIAVGPDNSIVVADSSNH  119 (319)
Q Consensus        50 ~~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~----~~~~~~~l~~~~~g~~~~~~~~~~  119 (319)
                      ...+|...|.+|++++++ +++++++.|++|++    |++.+..     ...    |...+.+++++++++++++++.++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~----W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIIL----WKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEE----EECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEE----EEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            346888999999999864 79999999999999    7765321     111    334678999999999999999999


Q ss_pred             eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        120 RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       120 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      .|++|| .+++....+      .+|...+.+++++|+++++++++.|+.|++||..+..       ......  ....|.
T Consensus       453 ~v~vwd~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-------~~~~~~--~~~~h~  517 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRF------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-------KYTISE--GGEGHR  517 (694)
T ss_dssp             EEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-------EEEECS--STTSCS
T ss_pred             cEEEEECCCCcceeEE------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-------ceeecc--CCCCCC
Confidence            999999 566666666      5677789999999999999999999999999986531       111111  113455


Q ss_pred             CCceeEEEcCCC--cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-
Q psy13998        199 EHPHYIAVSNTN--RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-  274 (319)
Q Consensus       199 ~~~~~~~~~~~g--~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-  274 (319)
                      ..+.+++++|++  .++++++.++.|++||. +++....+      .+|...+.+++++|+|+++++++.|+.|++||. 
T Consensus       518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            668899999976  57899999999999996 45666666      566778899999999999999999999999994 


Q ss_pred             CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        275 DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       275 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++.+..+       .+...+.+++|+|++.+++++. ++.|++|
T Consensus       592 ~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~-~~~i~iw  628 (694)
T 3dm0_A          592 EGKKLYSL-------EANSVIHALCFSPNRYWLCAAT-EHGIKIW  628 (694)
T ss_dssp             TTEEEECC-------BCSSCEEEEEECSSSSEEEEEE-TTEEEEE
T ss_pred             CCceEEEe-------cCCCcEEEEEEcCCCcEEEEEc-CCCEEEE
Confidence            67666655       2335689999999988777765 4568887

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=2.5e-25  Score=199.02  Aligned_cols=264  Identities=14%  Similarity=0.220  Sum_probs=208.9

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.+++|+|++.+++.+..+..+.+|+...+        |-..+.+++|+|+|+++++++.++.|++    |+..+..
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v----w~~~~~~   88 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV----FNYNTGE   88 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE----EETTTCC
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE----EECCCCc
Confidence            567999999999999999888877777765443        5577899999999999999999999999    8887776


Q ss_pred             eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC-CC-cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC
Q psy13998         93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS-DG-TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN  165 (319)
Q Consensus        93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~  165 (319)
                      ....+    ..+.+++|+|++..+++++.++.|.+|+. .+ .....+      .++...+.+++++| +++.+++++.+
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE------ECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE------cCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            65533    36789999999999999999999999994 34 444444      34556789999999 88999999999


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC--CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE  242 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~  242 (319)
                      +.|.+|++.+.      .....+.     ..+...+..++++|  ++.++++++.++.|++||. ++..+..+      .
T Consensus       163 g~v~vwd~~~~------~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~  225 (814)
T 3mkq_A          163 RTVKVWSLGQS------TPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL------E  225 (814)
T ss_dssp             SEEEEEETTCS------SCSEEEE-----CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE------E
T ss_pred             CeEEEEECCCC------cceeEEe-----cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE------c
Confidence            99999998642      2222221     12224567889998  8899999999999999995 55666666      4


Q ss_pred             ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEe
Q psy13998        243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQV  318 (319)
Q Consensus       243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v  318 (319)
                      .+...+.+++++|++.++++++.++.|++|+. +++.+..+      ..+...+.+++++|+|.  +++++.. +.+.+
T Consensus       226 ~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~  297 (814)
T 3mkq_A          226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL------NVGLERSWCIATHPTGRKNYIASGFD-NGFTV  297 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE------CCSSSSEEEEEECTTCGGGEEEEEET-TEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe------ecCCCcEEEEEEccCCCceEEEEEeC-CCEEE
Confidence            55667889999999999999999999999995 57777777      55667899999999987  4555554 44444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=4e-25  Score=206.06  Aligned_cols=271  Identities=11%  Similarity=0.136  Sum_probs=216.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.+++|+|++.++++++.+..+..|+...        +|...+.+++|+|+|+++++++.|+.|++    |+..+..
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v----wd~~~~~  690 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI----WDSATGK  690 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCC
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE----EECCCCc
Confidence            46788999999999999998888888776543        45678999999999999999999999999    9888776


Q ss_pred             eeEEe----cCceeeEEcCC--CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998         93 VFLAF----TWPRGIAVGPD--NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus        93 ~~~~~----~~~~~l~~~~~--g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      ....+    ..+.+++|+++  +.++++++.++.|.+|| .+++....+      .+|...+.+++++|+++++++++.+
T Consensus       691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~------~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM------FGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE------CCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee------cCCCCCEEEEEEecCCCEEEEEECC
Confidence            66544    35688999984  45888999999999999 667777766      4566788999999999999999999


Q ss_pred             CEEEEEecCCceeeecCceeeeeccc-------CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCC
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSM-------GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGS  237 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~  237 (319)
                      +.|++||+....      ....+...       .........+.+++++|+|..++++. ++.+.+|+. .+.....+. 
T Consensus       765 g~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~-  836 (1249)
T 3sfz_A          765 GTLRLWDVRSAN------ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH-  836 (1249)
T ss_dssp             SEEEEEEGGGTE------EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE-
T ss_pred             CeEEEEeCCCCc------ccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc-
Confidence            999999987432      22211110       00111223567789999998887776 689999995 455555542 


Q ss_pred             CCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        238 EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       238 ~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                          .++...+..++++|++.++++++.++.|.+|+. +++.+..+      .+|...+.+++|+|+|+++++++.|+.|
T Consensus       837 ----~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~------~~h~~~v~~v~~spdg~~l~s~s~dg~v  906 (1249)
T 3sfz_A          837 ----TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC------RGHLSWVHGVMFSPDGSSFLTASDDQTI  906 (1249)
T ss_dssp             ----CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ----CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec------CCCccceEEEEECCCCCEEEEEeCCCeE
Confidence                245567889999999999999999999999994 56667777      5788899999999999999999999999


Q ss_pred             EeC
Q psy13998        317 QVF  319 (319)
Q Consensus       317 ~v~  319 (319)
                      ++|
T Consensus       907 ~vw  909 (1249)
T 3sfz_A          907 RVW  909 (1249)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=9e-25  Score=195.46  Aligned_cols=236  Identities=16%  Similarity=0.226  Sum_probs=192.3

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .+|-..+.+++|+|+|+++++++.++.|++    |+..+......+    ..+.+++|+|+++++++++.++.|.+|+ .
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~i----wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEI----WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEE----EETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEE----EECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            466788999999999999999999999999    888776665543    3568999999999999999999999999 6


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +++.+..+      ..|...+.+++|+|++.++++++.++.|.+|++++.     ......+      ..+...+.++++
T Consensus        86 ~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~------~~~~~~v~~~~~  148 (814)
T 3mkq_A           86 TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----WALEQTF------EGHEHFVMCVAF  148 (814)
T ss_dssp             TCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-----SEEEEEE------ECCSSCEEEEEE
T ss_pred             CCcEEEEE------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-----ceEEEEE------cCCCCcEEEEEE
Confidence            77777776      456677899999999999999999999999998742     1222222      234456788999


Q ss_pred             cC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcC--CCcEEEEeCCCCEEEEEc-CCCceEEe
Q psy13998        207 SN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDD--QGYISVGDSGNNRIQIFT-PDGQFLRA  281 (319)
Q Consensus       207 ~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~--~g~~~v~~~~~~~i~~~~-~~g~~~~~  281 (319)
                      +| ++.++++++.++.|++||.. +.....+.     ..+...+..++++|  ++.++++++.++.|.+|+ .+++.+..
T Consensus       149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  223 (814)
T 3mkq_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT  223 (814)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-----CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-----cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            99 78899999999999999964 44333331     12224678899998  889999999999999999 46777777


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +      ..+...+.+++++|+|.++++++.|+.|++|
T Consensus       224 ~------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw  255 (814)
T 3mkq_A          224 L------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW  255 (814)
T ss_dssp             E------ECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             E------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            7      5677789999999999999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=6.2e-25  Score=179.66  Aligned_cols=239  Identities=10%  Similarity=0.088  Sum_probs=179.1

Q ss_pred             CCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccceeeEE------ecCceeeEEcC-CCcEEEEcCCCCeEEE
Q psy13998         52 PGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCVFLA------FTWPRGIAVGP-DNSIVVADSSNHRVQV  123 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~l~~~~-~g~~~~~~~~~~~i~~  123 (319)
                      .+|...+.+++|+|++ +++++++.|+.|++    |+..+......      ...+.+++|+| +++++++++.++.|++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~i----wd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIIL----WDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEE----EETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEE----EeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            4677889999999999 89999999999999    88875544432      23568999999 6789999999999999


Q ss_pred             EcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        124 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      ||..+.....+...   ..+...+.+++++|+++++++++.++.|.+||+++.       .+..+      ..+...+.+
T Consensus       146 wd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~------~~h~~~v~~  209 (383)
T 3ei3_B          146 RDFSGSVIQVFAKT---DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-------EIFKE------KLHKAKVTH  209 (383)
T ss_dssp             EETTSCEEEEEECC---CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-------EEEEE------ECSSSCEEE
T ss_pred             EECCCCceEEEecc---CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-------EEEEe------ccCCCcEEE
Confidence            99777766665332   233466899999999999999999999999998653       33333      335567889


Q ss_pred             EEEcCCCc-EEEEeCCCCeEEEEeCC-----CCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEEcC-C
Q psy13998        204 IAVSNTNR-VIVSDSNNHRVQIFDVN-----GRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIFTP-D  275 (319)
Q Consensus       204 ~~~~~~g~-~~v~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~~-~  275 (319)
                      ++++|++. ++++++.++.|++||..     +..+..+       .+...+.+++++| ++.++++++.++.|++||. +
T Consensus       210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            99999998 89999999999999964     4455444       2445789999999 9999999999999999994 4


Q ss_pred             CceEEeecccC-CCCCCCC----------CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWG-SGDGEFK----------GLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~-~~~~~~~----------~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++.+..+.... ....+..          ....++++|+|++  +++.|+.|++|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iw  335 (383)
T 3ei3_B          283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIY  335 (383)
T ss_dssp             TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEE
T ss_pred             CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEE
Confidence            44433332110 0011111          2233566666666  77789999988

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6e-24  Score=172.67  Aligned_cols=235  Identities=11%  Similarity=0.106  Sum_probs=183.7

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .+|...+.+++|+|+|+++++++.++.|++    |+..+......+    ..+.+++++|+++++++++.++.|++|| .
T Consensus        29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~v----wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEGDLLFSCSKDSSASV----WYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEESSSCEEE----EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             EEeeceEEEEEEcCCCCEEEEEeCCCEEEE----EeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            467788999999999999999999999999    888776666544    3678999999999999999999999999 6


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCcee-----eecCceeeeecccCCcCC
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVF-----QSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  196 (319)
                      +++.+..+.       +...+.+++++|++++++++..+     +.|.+|++.....     .........+..    ..
T Consensus       105 ~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~  173 (369)
T 3zwl_B          105 NGQCVATWK-------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT----HE  173 (369)
T ss_dssp             TCCEEEEEE-------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC----CT
T ss_pred             CCcEEEEee-------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC----Cc
Confidence            677776663       33567999999999999988888     9999999864210     000001111100    11


Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-  273 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-  273 (319)
                      ....+.+++++|++++++++..++.|++||..  +..+..+      ..+...+.+++++|++.++++++.++.|++|| 
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI------DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE------ecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence            12267889999999999999999999999975  4555665      44556789999999999999999999999999 


Q ss_pred             CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      .+++.+..+.       +...+..++++|+++++++++.++
T Consensus       248 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          248 STLQVLKKYE-------TDCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             TTCCEEEEEE-------CSSCEEEEEECSSSSEEEEEECCC
T ss_pred             CCCceeeeec-------CCCCceeEEecCCCceEEEeecCC
Confidence            4677777762       455789999999999888887777

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.94  E-value=1.2e-24  Score=178.80  Aligned_cols=250  Identities=12%  Similarity=0.071  Sum_probs=183.3

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce------eeE----EecCceeeEEcCC----C---cEEE
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC------VFL----AFTWPRGIAVGPD----N---SIVV  113 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~------~~~----~~~~~~~l~~~~~----g---~~~~  113 (319)
                      ..+|...+.+++|+|  +++++++.|+.|++    |+..+..      ...    +...+.+++++++    +   ++++
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKV----WDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEE----EESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEE----EECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            457888999999998  78999999999999    8876654      233    2236689999999    8   8999


Q ss_pred             EcCCCCeEEEEc-CCCcE-----EEEecCCCccCCC-----CCCceeEEEe----CCCeE-EEEeCCCCEEEEEecCCce
Q psy13998        114 ADSSNHRVQVFQ-SDGTF-----VGKFGSMGNKAGQ-----LEHPHYIAVS----NTNRV-IVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus       114 ~~~~~~~i~~~~-~~~~~-----~~~~~~~~~~~~~-----~~~~~~l~~~----~~g~~-~~~~~~~~~i~~~~~~~~~  177 (319)
                      +++.++.|++|+ ..++.     ...+      ..+     ...+.+++++    +++++ +++++.++.|.+||+....
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  159 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKL------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA  159 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEE------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred             EEcCCCCEEEEEccCCcccccccceee------cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence            999999999999 44443     4555      233     3678999999    99998 9999999999999987400


Q ss_pred             eeecCceee-----eecc-cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcc---c---
Q psy13998        178 FQSDGTFVG-----KFGS-MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEG---Q---  244 (319)
Q Consensus       178 ~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~---~---  244 (319)
                      ....++.+.     .+.. ......+...+.+++++|++ ++++++.++.|++||.. ++.+..+      ..   +   
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~h~~~  232 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF------ESQHSMINN  232 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE------ECCC---CC
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE------ecccccccc
Confidence            000011111     1100 00002244567899999999 99999999999999964 6666666      33   4   


Q ss_pred             ccCcceEEEcCCCcEEEEeCCC---CEEEEEc-CCCceEEeecccCC-------CCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        245 LKFPRGVAVDDQGYISVGDSGN---NRIQIFT-PDGQFLRAFGCWGS-------GDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       245 ~~~~~~i~~~~~g~~~v~~~~~---~~i~~~~-~~g~~~~~~~~~~~-------~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ...+.+++++|+++++++++.+   +.|++|| .+++.+..+.....       ...+...+.+++|+|+++++++++.|
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            5678999999999999999999   9999999 46777777721000       00067789999999999999999999


Q ss_pred             CeEEeC
Q psy13998        314 HRIQVF  319 (319)
Q Consensus       314 ~~i~v~  319 (319)
                      +.|++|
T Consensus       313 g~i~iw  318 (397)
T 1sq9_A          313 GKLRFW  318 (397)
T ss_dssp             SEEEEE
T ss_pred             CeEEEE
Confidence            999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-24  Score=180.54  Aligned_cols=248  Identities=19%  Similarity=0.215  Sum_probs=181.3

Q ss_pred             CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc---ce------eeEEecCceeeEEcCCCcEEEEcCCCCeE
Q psy13998         52 PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT---NC------VFLAFTWPRGIAVGPDNSIVVADSSNHRV  121 (319)
Q Consensus        52 ~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~---~~------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i  121 (319)
                      .+|...+.+++|+| +++++++++.|+.|++    |+..+   ..      ...+-..+.+++++++++++++++.++.|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~v----wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  135 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKI----WNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI  135 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEE----EEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEE----eECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            56778999999999 9999999999999999    77654   21      11234578999999999999999999999


Q ss_pred             EEEcC----CCcEEEEecCCC------ccCCCCCCceeEE--EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998        122 QVFQS----DGTFVGKFGSMG------NKAGQLEHPHYIA--VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG  189 (319)
Q Consensus       122 ~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~l~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  189 (319)
                      ++|+.    .++.........      ...++...+.++.  +++++.++++++.++.|++||++..      +.+..+.
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~  209 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------ERLQIIE  209 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC------CEEEEEE
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eeeEEEc
Confidence            99985    444433221000      0000234455565  5578999999999999999999753      4444442


Q ss_pred             ccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEc----CCCcEEEEeC
Q psy13998        190 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD----DQGYISVGDS  264 (319)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~~~v~~~  264 (319)
                      .    ..+...+.+++++|+++++++++.++.|++||. .++.+..+.     ..+...+.+++++    +++.++++++
T Consensus       210 ~----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~~~~~l~s~~  280 (437)
T 3gre_A          210 N----SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-----FGDHAPITHVEVCQFYGKNSVIVVGGS  280 (437)
T ss_dssp             C----CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-----CTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred             c----CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-----cCCCCceEEEEeccccCCCccEEEEEc
Confidence            1    114467889999999999999999999999996 455556552     1333457788655    4678999999


Q ss_pred             CCCEEEEEcC-CCceEEeecccCC------------------CC--CCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        265 GNNRIQIFTP-DGQFLRAFGCWGS------------------GD--GEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       265 ~~~~i~~~~~-~g~~~~~~~~~~~------------------~~--~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++.|++||. +++.+..+.....                  ..  .+...+++++++ +++++++++.|+.|++|
T Consensus       281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w  355 (437)
T 3gre_A          281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF  355 (437)
T ss_dssp             TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred             CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence            9999999995 5766665532110                  01  155668999999 77999999999999998

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-25  Score=189.19  Aligned_cols=272  Identities=9%  Similarity=-0.039  Sum_probs=187.6

Q ss_pred             cccccccCCCccc---------hhccc-------------------cceeeeecccCCCC------------CcCCCCcc
Q psy13998         21 VSGIGQVGTTPRS---------QYLQK-------------------RRLQFKIGSRGSEP------------GCFTWPRG   60 (319)
Q Consensus        21 ~~~i~~~~~~~~~---------~~l~~-------------------~~~~~~~~~~~~~~------------~~~~~~~~   60 (319)
                      ...|.+++|+|++         ++++.                   ++.+.++.+|+...            ++...+.+
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~  212 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD  212 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence            4567888888876         55554                   33445566664322            23466889


Q ss_pred             eEEcCC------CcEEEEeCCCCeEEEeccccccccceee-----------EEe----cCceeeEEcCCCcEEEEcCCCC
Q psy13998         61 IAVGPD------NSIVVADSSNHRVQVCFPHFDLKTNCVF-----------LAF----TWPRGIAVGPDNSIVVADSSNH  119 (319)
Q Consensus        61 v~~~~~------g~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~----~~~~~l~~~~~g~~~~~~~~~~  119 (319)
                      |+|+|+      +.++++++.|++|++    |++.+....           ..+    ..+.+++|++++ .+++++.|+
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~Dgtvrl----Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQEGTINF----LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEETTSCEEE----EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             EEECCCCCCCCCCceEEEEecCCeEEE----EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence            999986      579999999999999    777543211           112    356889998764 788899999


Q ss_pred             eEEEEcCC-Cc-EEEEecCCCccCCCCCCceeE--EEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc
Q psy13998        120 RVQVFQSD-GT-FVGKFGSMGNKAGQLEHPHYI--AVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK  194 (319)
Q Consensus       120 ~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l--~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (319)
                      +|++||.. +. ....+      .+|...+.++  ++.+++ .++++++.|++|++||++..      +....+...   
T Consensus       288 tV~lWD~~~~~~~~~~~------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~------~~~~~~~~~---  352 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYD------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI------ATTKTTVSR---  352 (524)
T ss_dssp             EEEEEETTBCSSCSEEE------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH------HHHCEEEEE---
T ss_pred             EEEEEECCCCCCceEEe------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC------Ccccccccc---
Confidence            99999954 42 22223      4566778888  456777 89999999999999998742      222111100   


Q ss_pred             CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                       .....+.+++++|++..+++++.++.|++||. .+..+..+      .+|...+.+++|+|+|.++++++.|++|++|+
T Consensus       353 -~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          353 -FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL------VSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             -CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE------EECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             -cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence             00113567999999999999999999999995 45554555      45677899999999999999999999999998


Q ss_pred             CCCce---------------EEeeccc------------------------CCCCCCCCCcceEEEccCCc---EEEEeC
Q psy13998        274 PDGQF---------------LRAFGCW------------------------GSGDGEFKGLEGVAVMSNGN---ILVCDR  311 (319)
Q Consensus       274 ~~g~~---------------~~~~~~~------------------------~~~~~~~~~~~~l~~~~~g~---~~v~~~  311 (319)
                      ...+.               +..+...                        ....++...+++++|+|++.   ++++++
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~  505 (524)
T 2j04_B          426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN  505 (524)
T ss_dssp             SCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred             chHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence            43211               1111000                        01123556789999999964   999999


Q ss_pred             CCCeEEeC
Q psy13998        312 ENHRIQVF  319 (319)
Q Consensus       312 ~~~~i~v~  319 (319)
                      .++.|+||
T Consensus       506 ~~g~vrlw  513 (524)
T 2j04_B          506 SAGLLTLE  513 (524)
T ss_dssp             TTSEEEEE
T ss_pred             cCceEEEE
Confidence            99999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=1.1e-24  Score=181.04  Aligned_cols=235  Identities=14%  Similarity=0.106  Sum_probs=165.4

Q ss_pred             CcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcC-CCcEEEEcCCCCeEEEE
Q psy13998         53 GCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGP-DNSIVVADSSNHRVQVF  124 (319)
Q Consensus        53 ~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~  124 (319)
                      ++-..|.+|+|+| +++++++++.||.|++    |+..+.....      |-..+.+|+|+| +++++++++.|+.|++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~l----Wd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIML----WNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEE----ECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEE----EECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            3446789999999 5679999999999999    8876543322      334678999997 57899999999999999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      |..+.....+...   ......+.+++++++++++++++.++.|.+||++++       .+..+      ..+...+.++
T Consensus       193 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-------~~~~~------~~h~~~v~~v  256 (435)
T 4e54_B          193 DFKGNILRVFASS---DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-------ELWNL------RMHKKKVTHV  256 (435)
T ss_dssp             ETTSCEEEEEECC---SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-------BCCCS------BCCSSCEEEE
T ss_pred             eccCCceeEEecc---CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-------eeEEE------ecccceEEee
Confidence            9777665554322   222345678999999999999999999999998763       22222      3455678899


Q ss_pred             EEcCCC-cEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEe
Q psy13998        205 AVSNTN-RVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRA  281 (319)
Q Consensus       205 ~~~~~g-~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~  281 (319)
                      +++|++ .++++++.++.|++||... .....+.   ...+|...+.+++|+|+|.++++++.|+.|++|+. +++....
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL---YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS---BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccceEE---EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            999987 4788888999999999642 2211111   11345567889999999999999999999999994 5555544


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      +............+....+++++.+++++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVG  362 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEE
Confidence            42111111111223445566666544443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.94  E-value=1.2e-23  Score=165.01  Aligned_cols=204  Identities=41%  Similarity=0.739  Sum_probs=165.4

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEE-eCCCeEEEEeCC-CCEEEEEec
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSN-NHRVQIFDV  173 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~~~~-~~~i~~~~~  173 (319)
                      ++..|.++++++++++|+++..++.|.+|+.+++.+..+...+....+...|.++++ ++++++|+++.. ++.|.+|+.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~  107 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  107 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence            456899999999999999988899999999888888777554433455678999999 478999999864 789999997


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                      ++.       .+..+.     ......|.+++++++|++|+++..++.|++|+.+++.+..+...    .....|.+|++
T Consensus       108 ~g~-------~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~----~~~~~p~~i~~  171 (286)
T 1q7f_A          108 YGQ-------FVRKFG-----ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS----KHLEFPNGVVV  171 (286)
T ss_dssp             TSC-------EEEEEC-----TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT----TTCSSEEEEEE
T ss_pred             CCc-------EEEEec-----CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC----CccCCcEEEEE
Confidence            653       333332     12345789999999999999999899999999988877776321    34557899999


Q ss_pred             cCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC-eEEeC
Q psy13998        254 DDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH-RIQVF  319 (319)
Q Consensus       254 ~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~-~i~v~  319 (319)
                      +++|++|+++..++.|++|+.+++.+..+..    .++...|.+|+++++|++|+++..++ .|++|
T Consensus       172 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~----~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          172 NDKQEIFISDNRAHCVKVFNYEGQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNLTIF  234 (286)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCCEEEEEcc----CCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence            9999999999999999999999988877743    23356899999999999999998886 88876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=4.1e-24  Score=177.37  Aligned_cols=239  Identities=13%  Similarity=0.175  Sum_probs=181.8

Q ss_pred             CcCCCCcceEEcCC-CcEEEEeCCCCeEEEecccccccc----------ceeeE----EecCceeeEEcCCCc-EEEEcC
Q psy13998         53 GCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKT----------NCVFL----AFTWPRGIAVGPDNS-IVVADS  116 (319)
Q Consensus        53 ~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~----------~~~~~----~~~~~~~l~~~~~g~-~~~~~~  116 (319)
                      +|...|.+++++|+ ++++++++.++.|++    |+..+          .....    +-..+.++++++++. ++++++
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~v----wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLV----FDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEE----EEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEE----EECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            34578999999997 679999999999999    77754          22222    233678999999987 999999


Q ss_pred             CCCeEEEEcCCC-----cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998        117 SNHRVQVFQSDG-----TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS  190 (319)
Q Consensus       117 ~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  190 (319)
                      .++.|.+|+...     ..+...   .....|...+.+++++| ++.++++++.++.|++||++...   ..+.+..+  
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~---~~~~~~~~--  273 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAK---NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN---TSKPSHTV--  273 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECS---EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC---SSSCSEEE--
T ss_pred             CCCeEEEEeCCCCCCCCceeccc---eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC---CCcceeEe--
Confidence            999999999543     111100   01135667789999999 67899999999999999997421   00122222  


Q ss_pred             cCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCC
Q psy13998        191 MGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGN  266 (319)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~  266 (319)
                          ..+...+.+++++|++. ++++++.++.|++||..  +..+..+      ..+...+.+++++|++ .++++++.+
T Consensus       274 ----~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~------~~h~~~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          274 ----DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------ESHKDEIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             ----ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE------ECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             ----ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe------ecCCCCEEEEEECCCCCCEEEEEeCC
Confidence                23456688999999885 78899999999999964  3445555      4456678999999998 589999999


Q ss_pred             CEEEEEcCCC---------------ceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        267 NRIQIFTPDG---------------QFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       267 ~~i~~~~~~g---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +.|.+|+...               +.+..+      .+|...+.+++|+|++. ++++++.|+.|++|
T Consensus       344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH------GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             SCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC------CCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             CcEEEEeCCCCccccCccccccCCcceEEEc------CCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence            9999999532               455555      56777899999999999 99999999999998

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=5.8e-24  Score=170.97  Aligned_cols=236  Identities=17%  Similarity=0.294  Sum_probs=178.3

Q ss_pred             CCCCCcCCCCcceEEcCC-CcEEEEeCCCCeEEEecccccccccee-----eE----EecCceeeEEcCCCcEEEEcCCC
Q psy13998         49 GSEPGCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCV-----FL----AFTWPRGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~----~~~~~~~l~~~~~g~~~~~~~~~  118 (319)
                      +...||...|.+|+|+|+ ++++++++.|++|++    |++.+...     ..    +...+.+++|+|+++++++++.+
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~v----Wd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM----WKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEE----EEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEE----EECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            345689999999999997 689999999999999    77654321     11    23467899999999999999999


Q ss_pred             CeEEEEcCCC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        119 HRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       119 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +.|++|+... ......      ..+...+....+.+++.++++++.++.+.+|+..+...     .....      ..+
T Consensus       108 ~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-----~~~~~------~~~  170 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRF------VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-----YTVQD------ESH  170 (340)
T ss_dssp             SEEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----EEECS------SSC
T ss_pred             ccceEEeecccceeeee------cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-----EEEEe------ccc
Confidence            9999999544 333333      22334567778888999999999999999999875311     11111      334


Q ss_pred             CCCceeEEEcCCC--cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        198 LEHPHYIAVSNTN--RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       198 ~~~~~~~~~~~~g--~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ...+..+++++++  .++++++.++.|++||. +++.+..+      .++...+.+++++|+++++++++.|+.|++||.
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~  244 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL  244 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence            4556778887654  67788888999999996 45566666      556667899999999999999999999999995


Q ss_pred             -CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        275 -DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       275 -~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       .++.+..+       .+...+..++++|++.+++ ++.|+.|++|
T Consensus       245 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~-~~~d~~i~iw  282 (340)
T 4aow_A          245 NEGKHLYTL-------DGGDIINALCFSPNRYWLC-AATGPSIKIW  282 (340)
T ss_dssp             TTTEEEEEE-------ECSSCEEEEEECSSSSEEE-EEETTEEEEE
T ss_pred             ccCceeeee-------cCCceEEeeecCCCCceee-ccCCCEEEEE
Confidence             55666665       2335789999999877555 4568899987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=6.2e-24  Score=177.23  Aligned_cols=249  Identities=8%  Similarity=0.084  Sum_probs=175.8

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce-----------eeE----Ee------------cCceeeEEc
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC-----------VFL----AF------------TWPRGIAVG  106 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~----~~------------~~~~~l~~~  106 (319)
                      +.+.+.+++|+|+|+++++++.|+.|++    |+..+..           ...    +.            ..+.+++|+
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~i----w~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVI----FQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEE----EEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEE----EEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            4578999999999999999999999999    8776544           122    22            447889999


Q ss_pred             CCC--cEEEEcCCCCeEEEEcCCC-cEEEE-ecCC---------------------------------CccCCCCCCcee
Q psy13998        107 PDN--SIVVADSSNHRVQVFQSDG-TFVGK-FGSM---------------------------------GNKAGQLEHPHY  149 (319)
Q Consensus       107 ~~g--~~~~~~~~~~~i~~~~~~~-~~~~~-~~~~---------------------------------~~~~~~~~~~~~  149 (319)
                      |++  ..+++++.++.|++|+... ..... +...                                 ....+|...+.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  7888889999999999432 22110 0000                                 001356678899


Q ss_pred             EEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc-cCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeC
Q psy13998        150 IAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS-MGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       150 l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~  227 (319)
                      ++++|++++++++ .++.|++||++...     +....+.. ......+...+.+++++|++ +++++++.++.|++||.
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            9999999999998 79999999997311     11111100 01123455678999999998 89999999999999996


Q ss_pred             C-CCE----EEEeCCCCCC------cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--CceEEeecccCCCCCCCC-
Q psy13998        228 N-GRV----ITSFGSEGSE------EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQFLRAFGCWGSGDGEFK-  293 (319)
Q Consensus       228 ~-~~~----~~~~~~~~~~------~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~-  293 (319)
                      . +..    ...+......      ..+...+.+++++|+|+++++++. +.|++||..  ++.+..+.      .+.. 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~------~~~~~  329 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ------VHEYL  329 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE------SCGGG
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee------ccccc
Confidence            4 443    3455211000      001126889999999999999888 999999953  66666552      2221 


Q ss_pred             --------------CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        294 --------------GLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       294 --------------~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                                    .+..++|+|+|+++++++.|+.|++|
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw  369 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF  369 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence                          12349999999999999999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=2.6e-24  Score=200.64  Aligned_cols=293  Identities=12%  Similarity=0.169  Sum_probs=220.7

Q ss_pred             hhhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcC--CCcEEEE
Q psy13998          5 SEAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGP--DNSIVVA   72 (319)
Q Consensus         5 ~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~--~g~~~~~   72 (319)
                      .+.++..++.++..+.  ...|.+++|+|++.++++++.+..+..|+...        +|...+.+++|++  ++.++++
T Consensus       639 i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  718 (1249)
T 3sfz_A          639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT  718 (1249)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             EEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence            3466777777666665  67899999999999999998888888887654        4557789999999  4558899


Q ss_pred             eCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCC---------
Q psy13998         73 DSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMG---------  138 (319)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~---------  138 (319)
                      ++.|+.|++    |+..+......+    ..+.+++++|+++++++++.++.|++|| .+++....+....         
T Consensus       719 g~~d~~v~v----wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  794 (1249)
T 3sfz_A          719 GSNDFFLKL----WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP  794 (1249)
T ss_dssp             EETTSCEEE----EETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred             EeCCCeEEE----EECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence            999999999    888777655533    4678999999999999999999999999 4554443332110         


Q ss_pred             ----------------------------------------ccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998        139 ----------------------------------------NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus       139 ----------------------------------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                                                              ...++...+.+++++|+++++++++.++.|.+|+....  
T Consensus       795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~--  872 (1249)
T 3sfz_A          795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--  872 (1249)
T ss_dssp             -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT--
T ss_pred             ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--
Confidence                                                    00134456678888888888888888888888888743  


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC-------E--------------EEE---
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-------V--------------ITS---  234 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~-------~--------------~~~---  234 (319)
                          ..+..+      ..+...+.+++++|++..+++++.++.|++|+....       .              ...   
T Consensus       873 ----~~~~~~------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (1249)
T 3sfz_A          873 ----LKVADC------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN  942 (1249)
T ss_dssp             ----EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred             ----ceeeec------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence                333333      345667899999999999999999999999984310       0              000   


Q ss_pred             ------e-CCCCC-CcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        235 ------F-GSEGS-EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       235 ------~-~~~~~-~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                            . ..... .......+.+++++|+++++++++.++.|.+|+ .+++.+..+      .+|...+.+++|+|+|+
T Consensus       943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~------~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A          943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG------VGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp             SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC------CCCSSCCCCEEECSSSS
T ss_pred             CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec------ccCCCceEEEEECCCCC
Confidence                  0 00000 001123467899999999999999999999999 467777666      57788899999999999


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      ++++++.|+.|++|
T Consensus      1017 ~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A         1017 TLISSSEDSVIQVW 1030 (1249)
T ss_dssp             CEEEECSSSBEEEE
T ss_pred             EEEEEcCCCEEEEE
Confidence            99999999999998

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.1e-25  Score=186.89  Aligned_cols=227  Identities=9%  Similarity=-0.004  Sum_probs=156.3

Q ss_pred             CCCcEEEEeCCCCeEEEecccccccccee-------eE-EecCceeeEEcCC------CcEEEEcCCCCeEEEEcCC-Cc
Q psy13998         65 PDNSIVVADSSNHRVQVCFPHFDLKTNCV-------FL-AFTWPRGIAVGPD------NSIVVADSSNHRVQVFQSD-GT  129 (319)
Q Consensus        65 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~-~~~~~~~l~~~~~------g~~~~~~~~~~~i~~~~~~-~~  129 (319)
                      |+++++++++.|++|++    |+..+...       +. +...+.+++|+|+      +.++++++.|+.|++|+.. ++
T Consensus       171 ~~~~~laS~s~D~tI~i----Wd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~  246 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQI----FKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA  246 (524)
T ss_dssp             -----------CEEEEE----EEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred             hhhhhhccCCCCceEEE----EEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence            44455666778999999    77765432       11 2346789999986      5689999999999999943 32


Q ss_pred             EE----EEecCC-CccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        130 FV----GKFGSM-GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       130 ~~----~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      ..    .....+ ....++...+.+++|++++ .+++++.|+.|++||++...     .....+      ..|...+.++
T Consensus       247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----~~~~~~------~~H~~~V~sv  314 (524)
T 2j04_B          247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----VPSFYD------QVHDSYILSV  314 (524)
T ss_dssp             SSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----SCSEEE------ECSSSCEEEE
T ss_pred             cccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----CceEEe------ecccccEEEE
Confidence            11    000000 0113455678999999865 68899999999999997320     111112      3455667788


Q ss_pred             --EEcCCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccc--cCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCc
Q psy13998        205 --AVSNTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQL--KFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQ  277 (319)
Q Consensus       205 --~~~~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~  277 (319)
                        ++++++ +++++++.|+.|++||.. ++....+      .++.  ..+.+++|+|++..+++++.++.|++|+ ..+.
T Consensus       315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~  388 (524)
T 2j04_B          315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF  388 (524)
T ss_dssp             EEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred             EEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence              467777 899999999999999964 3332222      1222  1367899999999999999999999999 4566


Q ss_pred             eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+..+      .+|...+++++|+|+|+++++++.|+.|++|
T Consensus       389 ~~~~l------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          389 AVHPL------VSRETTITAIGVSRLHPMVLAGSADGSLIIT  424 (524)
T ss_dssp             CCEEE------EECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred             cceee------ecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence            65666      4678899999999999999999999999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.9e-24  Score=189.95  Aligned_cols=243  Identities=12%  Similarity=0.092  Sum_probs=182.0

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc--ceeeE----EecCceeeEEcCC--CcEEEEcCCCCeEE
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT--NCVFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQ  122 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~  122 (319)
                      ..+|...+.+++|+|+|+++++++.|+.|++    |+..+  .....    +...+.+++++++  ++++++++.++.|+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~v----wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKI----FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEE----EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEE----EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            3578889999999999999999999999999    87752  23333    2336789999987  88999999999999


Q ss_pred             EEcC-CCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        123 VFQS-DGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       123 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +||. +++  ....+      ..+...+.+++++|+  ++++++++.++.|++||+.....    ......      ..+
T Consensus        81 vwd~~~~~~~~~~~~------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~------~~~  144 (753)
T 3jro_A           81 IWKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIII------DAH  144 (753)
T ss_dssp             EEEEETTEEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEE------ECC
T ss_pred             EEECCCCcccccccc------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEe------ecC
Confidence            9994 444  33444      456678899999998  99999999999999999875310    111111      234


Q ss_pred             CCCceeEEEcC-------------CCcEEEEeCCCCeEEEEeCC-C----CEEEEeCCCCCCcccccCcceEEEcCC---
Q psy13998        198 LEHPHYIAVSN-------------TNRVIVSDSNNHRVQIFDVN-G----RVITSFGSEGSEEGQLKFPRGVAVDDQ---  256 (319)
Q Consensus       198 ~~~~~~~~~~~-------------~g~~~v~~~~~~~i~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~i~~~~~---  256 (319)
                      ...+.+++++|             ++.++++++.++.|++||.. +    .....+      .++...+.+++++|+   
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~  218 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL------EGHSDWVRDVAWSPTVLL  218 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE------CCCSSCEEEEEECCCCSS
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee------cCCCCcEEEEEeccCCCC
Confidence            55678899998             47889999999999999953 3    233444      455667899999999   


Q ss_pred             CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        257 GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.++++++.++.|++|+.................+...+++++|+|+|+++++++.|+.|++|
T Consensus       219 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (753)
T ss_dssp             SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred             CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            899999999999999995432100000001113466778999999999999999999999998

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.93  E-value=4.4e-23  Score=169.11  Aligned_cols=251  Identities=18%  Similarity=0.243  Sum_probs=176.2

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE---ecCceeeEEcCCCc-EEEEcCCCC-eEEEEcCCC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA---FTWPRGIAVGPDNS-IVVADSSNH-RVQVFQSDG  128 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~g~-~~~~~~~~~-~i~~~~~~~  128 (319)
                      .+..|.+|+++++|++|+++..++.|++    |+..+......   ...+. ++++++++ +|+++...+ .|++++..+
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~----id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRL----ISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEE----EETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEE----EECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            5789999999999999999999999999    88765443321   23456 99999987 555555343 899999543


Q ss_pred             c-EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce-eEE
Q psy13998        129 T-FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH-YIA  205 (319)
Q Consensus       129 ~-~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  205 (319)
                      . ....+....  ......|.+++++| ++.+|++. .++.|.+|+.++...    .........+   .....|. +++
T Consensus       204 ~~~~~~~g~~~--~~~~~~p~~iav~p~~g~lyv~d-~~~~I~~~d~~~~~~----~~~~~~~~~g---~~~~~P~~~ia  273 (409)
T 3hrp_A          204 GWAPTRIGQLG--STFSGKIGAVALDETEEWLYFVD-SNKNFGRFNVKTQEV----TLIKQLELSG---SLGTNPGPYLI  273 (409)
T ss_dssp             TTCEEEEEECC--TTSCSCCCBCEECTTSSEEEEEC-TTCEEEEEETTTCCE----EEEEECCCCS---CCCCSSCCEEE
T ss_pred             CceeEEeeecc--chhcCCcEEEEEeCCCCeEEEEE-CCCcEEEEECCCCCE----EEEecccccC---CCCCCccccEE
Confidence            2 222221100  11346789999999 78888855 478999999875421    1111111111   1112355 999


Q ss_pred             EcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCC---CCC-----cccccCcceEEEcCCCcEEEEeC-CCCEEEEEc-C
Q psy13998        206 VSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSE---GSE-----EGQLKFPRGVAVDDQGYISVGDS-GNNRIQIFT-P  274 (319)
Q Consensus       206 ~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~i~~~~~g~~~v~~~-~~~~i~~~~-~  274 (319)
                      ++| ++++|+++..+++|++|+.++......+..   +..     ...+..|.+|+++++|++|+++. .+++|++|+ .
T Consensus       274 ~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          274 YYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred             EeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence            999 589999999999999999988755444322   110     12367799999999999999999 999999999 7


Q ss_pred             CCceEEeecccC--------CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        275 DGQFLRAFGCWG--------SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       275 ~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|+.....+...        .....+..|.+|+++++|.+|+++..+++|+.+
T Consensus       354 ~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          354 DGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            776544443211        011236789999999999999999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=174.60  Aligned_cols=243  Identities=12%  Similarity=0.123  Sum_probs=175.0

Q ss_pred             CcCCCCcceEEcCCCc-EEEEeCC---CCeEEEeccccccccceeeE-----EecCceeeEEcCC---CcEEEEcCCCCe
Q psy13998         53 GCFTWPRGIAVGPDNS-IVVADSS---NHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPD---NSIVVADSSNHR  120 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~-~~~~~~~---~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~---g~~~~~~~~~~~  120 (319)
                      +|...+.+++|+|+++ ++++++.   ++.|++    |+..+.....     +...+.+++|+|+   ++++++++.++.
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~i----w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQL----YEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEE----EEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEE----EeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            5678899999999986 5556665   899999    8887654432     3346789999998   688899999999


Q ss_pred             EEEEc-CCCc-EEEEecCCCccCCCCCCceeEE------EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC
Q psy13998        121 VQVFQ-SDGT-FVGKFGSMGNKAGQLEHPHYIA------VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG  192 (319)
Q Consensus       121 i~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~------~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  192 (319)
                      |++|+ ..++ .+..+      .+|...+.++.      ++++++++++++.++.|++||+....     ..+..+....
T Consensus        92 i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~  160 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSV------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-----DPVANMEPVQ  160 (357)
T ss_dssp             EEEECTTSCSSCSEEE------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-----SCSEEECCCT
T ss_pred             EEEEeCCCCCccEEEE------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-----CcceeccccC
Confidence            99999 4444 45555      45666778885      46789999999999999999987531     1223221110


Q ss_pred             CcCCCCCCceeEE----EcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC---CCcEEEEeCC
Q psy13998        193 NKAGQLEHPHYIA----VSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD---QGYISVGDSG  265 (319)
Q Consensus       193 ~~~~~~~~~~~~~----~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~g~~~v~~~~  265 (319)
                        ........+++    ++++++++++++.++.|++||.........      ..+...+.+++++|   ++.++++++.
T Consensus       161 --~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          161 --GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE------TNIKNGVCSLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             --TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred             --CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee------cCCCCceEEEEcCCCCCCCCEEEEECC
Confidence              01122455666    678999999999999999999765444333      23445688999999   8899999999


Q ss_pred             CCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ++.|++|+.. ++.+..+... ....+...+.+++++|++. ++++++.|+.|++|
T Consensus       233 dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          233 EGKFHVFDMRTQHPTKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             TTEEEEEEEEEEETTTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCeEEEEeCcCCCcccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            9999999943 3222222000 0025677899999999998 89999999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=1.2e-23  Score=182.44  Aligned_cols=269  Identities=8%  Similarity=0.053  Sum_probs=203.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC------------CcCCC-CcceEEcC--CCcEEEEeCCCCeEEEeccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTW-PRGIAVGP--DNSIVVADSSNHRVQVCFPH   85 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~-~~~v~~~~--~g~~~~~~~~~~~v~~~~~~   85 (319)
                      ...+..++++|++.+++.+. ...+..|....            +|... +.+++|+|  +++++++++.++.|++    
T Consensus        18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v----   92 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV----   92 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE----
T ss_pred             cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE----
Confidence            56789999999999888765 33444444332            35567 89999999  9999999999999999    


Q ss_pred             cccccc--------eeeEE----ecCceeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEEEecCCCccCCCCCCcee
Q psy13998         86 FDLKTN--------CVFLA----FTWPRGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY  149 (319)
Q Consensus        86 ~~~~~~--------~~~~~----~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (319)
                      |+..+.        .....    ...+.+++++|+++.+++++.+    +.|.+|+ .++.+..+      .++...+.+
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~------~~~~~~v~~  165 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEV------SGHSQRINA  165 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEEC------CSCSSCEEE
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceee------ecCCccEEE
Confidence            887533        22222    2367899999999988887766    6899999 55666666      456678899


Q ss_pred             EEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC---CceeEEEcCC-CcEEEEeCCCCeEEE
Q psy13998        150 IAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE---HPHYIAVSNT-NRVIVSDSNNHRVQI  224 (319)
Q Consensus       150 l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-g~~~v~~~~~~~i~~  224 (319)
                      ++++|++. ++++++.++.|++||....      +.+..+      ..+..   .+.+++++|+ ++++++++.++.|++
T Consensus       166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~------~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          166 CHLKQSRPMRSMTVGDDGSVVFYQGPPF------KFSASD------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  233 (615)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTTB------EEEEEE------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             EEECCCCCcEEEEEeCCCcEEEEeCCCc------ceeeee------cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            99999987 8899999999999998743      344444      23344   6789999999 999999999999999


Q ss_pred             EeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        225 FDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       225 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      ||. +++.+..+....  ..+...+.+++++ ++.++++++.++.|++|+. +++.+..+....  ......+.++.+. 
T Consensus       234 wd~~~~~~~~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~-  307 (615)
T 1pgu_A          234 FDGKSGEFLKYIEDDQ--EPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK--QQLGNQQVGVVAT-  307 (615)
T ss_dssp             EETTTCCEEEECCBTT--BCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCGGGCEEEEEEE-
T ss_pred             EECCCCCEeEEecccc--cccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcccCceeEEEeC-
Confidence            995 566666652100  0455578899999 9999999999999999995 577777663211  1123456677775 


Q ss_pred             CCcEEEEeCCCCeEEeC
Q psy13998        303 NGNILVCDRENHRIQVF  319 (319)
Q Consensus       303 ~g~~~v~~~~~~~i~v~  319 (319)
                      ++.++++++.++.|++|
T Consensus       308 ~~~~l~~~~~~g~i~~~  324 (615)
T 1pgu_A          308 GNGRIISLSLDGTLNFY  324 (615)
T ss_dssp             ETTEEEEEETTSCEEEE
T ss_pred             CCCeEEEEECCCCEEEE
Confidence            77889999999999887

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=2e-23  Score=173.48  Aligned_cols=260  Identities=16%  Similarity=0.239  Sum_probs=188.9

Q ss_pred             ccccccCCCccchhccccceeeeecccCCCC-------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccc
Q psy13998         22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ..+..++++|++.++..+..+..+..|+...             +|...+.+++++++++++++++.++.|++    |+.
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~----~d~  198 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV----FDL  198 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE----EET
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE----EEC
Confidence            3456788899777777766555555554432             34457788999999999999999999999    888


Q ss_pred             ccceeeEEe----cCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEe
Q psy13998         89 KTNCVFLAF----TWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  162 (319)
Q Consensus        89 ~~~~~~~~~----~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~  162 (319)
                      .+......+    ..+.+++++|+++ +++++..++.|.+|| .+++.+..+..       ...+.+++++|+++.++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-------IGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-------CSEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-------CCCceEEEEcCCCCEEEEE
Confidence            766555533    3678999999987 456777889999999 56666655532       2347899999999766665


Q ss_pred             C--------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC-CCEE
Q psy13998        163 S--------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN-GRVI  232 (319)
Q Consensus       163 ~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~-~~~~  232 (319)
                      .        .++.|++||+.+.      +.+....       +...+.+++++|+++ +++++..++.|++||.+ ++..
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~------~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKE------KLIDTIG-------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTT------EEEEEEE-------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ECCCCccccCCCeEEEEECCCC------cEEeecc-------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence            5        4789999998753      3322221       123567899999984 77888899999999975 4455


Q ss_pred             EEeCCCCCCcccccCcceEEEcCCCcE-EEEeCC--------------CCEEEEEcC-CCceEEeecccCCCCCCCCCcc
Q psy13998        233 TSFGSEGSEEGQLKFPRGVAVDDQGYI-SVGDSG--------------NNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLE  296 (319)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~~~~g~~-~v~~~~--------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~  296 (319)
                      ..+       .....+.+++++|+|++ ++++..              ++.|++||. +++.+..+.      . ...+.
T Consensus       339 ~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~------~-~~~~~  404 (433)
T 3bws_A          339 KSI-------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE------A-GNQPT  404 (433)
T ss_dssp             EEE-------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE------C-SSSEE
T ss_pred             EEe-------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec------C-CCCCc
Confidence            444       13345789999999974 444443              469999995 677777662      2 34689


Q ss_pred             eEEEccCCcEEE-EeCCCCeEEeC
Q psy13998        297 GVAVMSNGNILV-CDRENHRIQVF  319 (319)
Q Consensus       297 ~l~~~~~g~~~v-~~~~~~~i~v~  319 (319)
                      +++++|+|++++ ++..++.|++|
T Consensus       405 ~~~~s~dg~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          405 GLDVSPDNRYLVISDFLDHQIRVY  428 (433)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEECCCCeEEEE
Confidence            999999998655 45569999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=6.4e-23  Score=168.18  Aligned_cols=226  Identities=20%  Similarity=0.331  Sum_probs=170.0

Q ss_pred             CCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCc
Q psy13998         56 TWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGT  129 (319)
Q Consensus        56 ~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~  129 (319)
                      ..|.+++++|+|+. +++++.++.|++    |+..+.+....+.   .+.+++++|+++ +++++..++.|++|| .+++
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v----~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~  107 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSI----IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEE----EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEE----EECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence            45889999999985 578888999999    8887776655433   678999999987 557777789999999 4556


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      .+..+.       ....+.+++++++++ +++++..++.|.+||+.+.      +.+..+..       ...+.+++++|
T Consensus       108 ~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~~-------~~~~~~~~~~~  167 (391)
T 1l0q_A          108 VAGTVK-------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK------AVINTVSV-------GRSPKGIAVTP  167 (391)
T ss_dssp             EEEEEE-------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEEC-------CSSEEEEEECT
T ss_pred             EEEEEe-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------cEEEEEec-------CCCcceEEECC
Confidence            655553       124678999999987 4588888999999998743      33333311       23468899999


Q ss_pred             CCcE-EEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC---CCCEEEEEcC-CCceEEee
Q psy13998        209 TNRV-IVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS---GNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       209 ~g~~-~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~---~~~~i~~~~~-~g~~~~~~  282 (319)
                      +++. ++++..++.|++||... +....+       .+...+.+++++|+|+.+++++   .++.|++||. +++.+..+
T Consensus       168 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          168 DGTKVYVANFDSMSISVIDTVTNSVIDTV-------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEE-------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEE-------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            9864 57888899999999754 444444       1233578899999997655554   6899999995 56666666


Q ss_pred             cccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        283 GCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      .      . ...+.+++++|+|+ ++++++.++.|++|
T Consensus       241 ~------~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          241 P------V-GPDPAGIAVTPDGKKVYVALSFXNTVSVI  271 (391)
T ss_dssp             E------C-CSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             e------c-CCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence            2      2 23588999999997 56888999999987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.7e-24  Score=190.77  Aligned_cols=123  Identities=11%  Similarity=0.078  Sum_probs=96.6

Q ss_pred             hhhccchhhhhhhhhh-cccccccCCCccchhccccceeeeecccCCC-------------------CCcCCCCcceEEc
Q psy13998          5 SEAKNINSCFLLQTLL-VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------------------PGCFTWPRGIAVG   64 (319)
Q Consensus         5 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------------~~~~~~~~~v~~~   64 (319)
                      .+.+++.++.++..+. ...|.+++|+|++.+++.+..+..+..|+..                   .+|...+.+|+|+
T Consensus        81 v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           81 VYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             EEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence            4567777776666554 4578999999999999998877776666432                   3456789999999


Q ss_pred             CC-CcEEEEeCCCCeEEEeccccccccceeeEEe----------------------cCceeeEEcCCCcEEEEcCCCCeE
Q psy13998         65 PD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----------------------TWPRGIAVGPDNSIVVADSSNHRV  121 (319)
Q Consensus        65 ~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~g~~~~~~~~~~~i  121 (319)
                      |+ +.++++++.++.| +    |+..+......+                      ..+.+++|+|+|+++++++.|+.|
T Consensus       161 p~~~~~l~~g~~dg~v-l----Wd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i  235 (902)
T 2oaj_A          161 PRDIGTVLISYEYVTL-T----YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL  235 (902)
T ss_dssp             TTEEEEEEEECSSCEE-E----EETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred             cCCCCEEEEEeCCCcE-E----EECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence            96 4688899999999 9    888776655433                      347899999999999999999999


Q ss_pred             EEEc-CCCcEEE
Q psy13998        122 QVFQ-SDGTFVG  132 (319)
Q Consensus       122 ~~~~-~~~~~~~  132 (319)
                      ++|| .+++.+.
T Consensus       236 ~lWd~~~g~~~~  247 (902)
T 2oaj_A          236 VFWDANSGHMIM  247 (902)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEECCCCcEEE
Confidence            9999 4666554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=2.6e-24  Score=173.22  Aligned_cols=242  Identities=10%  Similarity=0.039  Sum_probs=179.5

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce----eeE---EecCceeeEEcCCCc-EEEEcCCCCeEEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC----VFL---AFTWPRGIAVGPDNS-IVVADSSNHRVQV  123 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~----~~~---~~~~~~~l~~~~~g~-~~~~~~~~~~i~~  123 (319)
                      .+|...+.+++|+|+++++++++.++.|++    |+..+..    ...   +...+.+++++++++ ++++++.++.|++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~i----w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTV----YKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEE----EEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEE----EEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            467788999999999999999999999999    8776554    211   234678999999999 8999999999999


Q ss_pred             EcC-CCcEEEEecCCCccCC--CCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce---eeecCceeeeecccCCcCCC
Q psy13998        124 FQS-DGTFVGKFGSMGNKAG--QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV---FQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       124 ~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  197 (319)
                      |+. .......+      ..  +...+.++++++ ++++++++.++.|++||++...   ....++.+..       ..+
T Consensus        84 wd~~~~~~~~~~------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~  149 (342)
T 1yfq_A           84 VDLIGSPSFQAL------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-------TKV  149 (342)
T ss_dssp             ECSSSSSSEEEC------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-------SSS
T ss_pred             EEeccCCceEec------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-------Eee
Confidence            997 76655555      34  667889999999 9999999999999999976300   0000122211       124


Q ss_pred             CCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC--C--EEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEE
Q psy13998        198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG--R--VITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIF  272 (319)
Q Consensus       198 ~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~  272 (319)
                      ...+.++++++++  +++++.++.|++||...  .  .....      ..+...+.+++++| +++++++++.++.|.+|
T Consensus       150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  221 (342)
T 1yfq_A          150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             CCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee------cCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence            4567889999876  77777899999999754  2  12222      23344678999999 99999999999999999


Q ss_pred             cCCC-------ceEEeecccCC---CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        273 TPDG-------QFLRAFGCWGS---GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       273 ~~~g-------~~~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+.       +....+.....   ...+...+.+++|+|+++++++++.|+.|++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            8432       44444421100   01223489999999999999999999999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.93  E-value=8e-24  Score=169.27  Aligned_cols=207  Identities=24%  Similarity=0.431  Sum_probs=159.3

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce-eeE-------------EecCceeeEEcC-CCcEEEEcC-
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC-VFL-------------AFTWPRGIAVGP-DNSIVVADS-  116 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-~~~-------------~~~~~~~l~~~~-~g~~~~~~~-  116 (319)
                      +++..|.+|+++++|++|+++..++.|++    |+..... .+.             ++..|.++++++ ++++|++++ 
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~----~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~  163 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFK----LDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY  163 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEE----ECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEE----EeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence            45678999999999999999999999999    7664321 222             234799999999 899999997 


Q ss_pred             CCCeEEEEcCCCcEEEEecCCCcc----CCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998        117 SNHRVQVFQSDGTFVGKFGSMGNK----AGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       117 ~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                      .+++|.+|+.+|+.+..+...+..    ..++..|.+++++++ +++|+++..+++|.+|+.++      |+++..+...
T Consensus       164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~------G~~~~~~~~~  237 (329)
T 3fvz_A          164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT------KEFVREIKHA  237 (329)
T ss_dssp             SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT------CCEEEEECCT
T ss_pred             CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC------CcEEEEEecc
Confidence            789999999999988877544322    245567999999998 89999999999999999871      2444444221


Q ss_pred             CCcCCCCCCceeEEEcC------CCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998        192 GNKAGQLEHPHYIAVSN------TNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS  264 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~  264 (319)
                          .....+.+++++|      +|++++++..+..|++|+ .+++.+..+...   ..++..|.+|+++++|++|+++.
T Consensus       238 ----~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~---~~~~~~p~~ia~~~dG~lyvad~  310 (329)
T 3fvz_A          238 ----SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV---RKHFDMPHDIVASEDGTVYIGDA  310 (329)
T ss_dssp             ----TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS---SSCCSSEEEEEECTTSEEEEEES
T ss_pred             ----ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC---CCccCCeeEEEECCCCCEEEEEC
Confidence                1223456667766      555555556667999999 577877776421   34677899999999999999999


Q ss_pred             CCCEEEEEcCCC
Q psy13998        265 GNNRIQIFTPDG  276 (319)
Q Consensus       265 ~~~~i~~~~~~g  276 (319)
                      .+++|++|+.++
T Consensus       311 ~~~~I~~~~~~~  322 (329)
T 3fvz_A          311 HTNTVWKFTLTE  322 (329)
T ss_dssp             SSCCEEEEEEEE
T ss_pred             CCCEEEEEeCCc
Confidence            999999999765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=7.2e-24  Score=172.15  Aligned_cols=250  Identities=12%  Similarity=0.081  Sum_probs=174.0

Q ss_pred             CCCCcCCCCcceEEcCC---CcEEEEeCCCCeEEEecccccccc-ceee-E----EecCceeeEEcCCCcEEEEcCCCCe
Q psy13998         50 SEPGCFTWPRGIAVGPD---NSIVVADSSNHRVQVCFPHFDLKT-NCVF-L----AFTWPRGIAVGPDNSIVVADSSNHR  120 (319)
Q Consensus        50 ~~~~~~~~~~~v~~~~~---g~~~~~~~~~~~v~~~~~~~~~~~-~~~~-~----~~~~~~~l~~~~~g~~~~~~~~~~~  120 (319)
                      ...+|...+.+++|+|+   |+++++++.|+.|++    |+..+ .... .    +...+.+++++|+++++++++.++.
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRC----WEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEE----EEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEE----EEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            44678889999999998   699999999999999    88875 3332 2    2346789999999999999999999


Q ss_pred             EEEEcC-CCcEEEEecCCCccCCCCCCceeEEE--eCCCeEEEEeCCCCEEEEEecCCcee----eecCce---------
Q psy13998        121 VQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAV--SNTNRVIVSDSNNHRVQIFDVNGRVF----QSDGTF---------  184 (319)
Q Consensus       121 i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~g~~~~~~~~~~~i~~~~~~~~~~----~~~~~~---------  184 (319)
                      |++||. +++... .      ..+...+.++++  +++++++++++.++.|++||+.....    ......         
T Consensus       110 v~iwd~~~~~~~~-~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  182 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-I------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM  182 (368)
T ss_dssp             EEEEETTTTEEEE-E------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred             EEEEEcCCCCcee-e------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence            999995 444443 3      235577899999  88999999999999999999864311    000000         


Q ss_pred             ---------eeeecccC-------CcCCCCCCceeEEEcCCCc----EEEEeCCCCeEEEEeCCCC----EEEEeCCCC-
Q psy13998        185 ---------VGKFGSMG-------NKAGQLEHPHYIAVSNTNR----VIVSDSNNHRVQIFDVNGR----VITSFGSEG-  239 (319)
Q Consensus       185 ---------~~~~~~~~-------~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~i~~~~~~~~----~~~~~~~~~-  239 (319)
                               +..+....       ...........+++.++..    .+++++.++.|++|+.+..    ....+.... 
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  262 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS  262 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence                     00000000       0001112233444443332    3788888999999996542    223331100 


Q ss_pred             -----CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        240 -----SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       240 -----~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                           ....+...+.+++++|+++++++++.++.|++||. +++.+..+      ..+...+.+++|+|+|+++++++.|
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS------EQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC------CCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe------cCCCCCceEEEECCCCCeEEEEecc
Confidence                 00112225889999999999999999999999994 57777777      5677889999999999988888877


Q ss_pred             CeE
Q psy13998        314 HRI  316 (319)
Q Consensus       314 ~~i  316 (319)
                      +..
T Consensus       337 ~~~  339 (368)
T 3mmy_A          337 DWS  339 (368)
T ss_dssp             CST
T ss_pred             ccc
Confidence            643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=8.2e-23  Score=168.09  Aligned_cols=224  Identities=14%  Similarity=0.148  Sum_probs=174.3

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFV  131 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~  131 (319)
                      ...+++++  ..+++++.++.|++    |+..++.....+     ..+.+++++|+++++++++.++.|.+|+ .+++.+
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~l----w~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  169 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYV----WNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL  169 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEE----EETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEE----eeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE
Confidence            34456654  44667778999999    888766654432     3578999999999999999999999999 567777


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      ..+      ..+...+.+++++  ++++++++.++.|.+||++..     +..+..+      ..+...+.+++++|++.
T Consensus       170 ~~~------~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~------~~~~~~v~~~~~~~~~~  230 (401)
T 4aez_A          170 RTM------AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA-----NHQIGTL------QGHSSEVCGLAWRSDGL  230 (401)
T ss_dssp             EEE------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS-----SCEEEEE------ECCSSCEEEEEECTTSS
T ss_pred             EEe------cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC-----cceeeEE------cCCCCCeeEEEEcCCCC
Confidence            777      4566778888884  578999999999999998731     1223333      34556788999999999


Q ss_pred             EEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeC--CCCEEEEEc-CCCceEEeecccC
Q psy13998        212 VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDS--GNNRIQIFT-PDGQFLRAFGCWG  286 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~--~~~~i~~~~-~~g~~~~~~~~~~  286 (319)
                      ++++++.++.|++||. .+.....+      ..+...+.+++++|++ .++++++  .++.|++|| .+++.+..+.   
T Consensus       231 ~l~s~~~d~~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---  301 (401)
T 4aez_A          231 QLASGGNDNVVQIWDARSSIPKFTK------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---  301 (401)
T ss_dssp             EEEEEETTSCEEEEETTCSSEEEEE------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---
T ss_pred             EEEEEeCCCeEEEccCCCCCccEEe------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---
Confidence            9999999999999996 45666666      4556678999999976 5777765  799999999 4677777762   


Q ss_pred             CCCCCCCCcceEEEccCCcEEEE--eCCCCeEEeC
Q psy13998        287 SGDGEFKGLEGVAVMSNGNILVC--DRENHRIQVF  319 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~~~v~--~~~~~~i~v~  319 (319)
                          +...+.+++|+|+++++++  +..++.|++|
T Consensus       302 ----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~  332 (401)
T 4aez_A          302 ----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW  332 (401)
T ss_dssp             ----CSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred             ----CCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence                3457999999999998877  5689999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.7e-23  Score=165.08  Aligned_cols=227  Identities=15%  Similarity=0.238  Sum_probs=177.2

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      .+|...+.++++ ++++++++++.|+.|++    |+..+......    ...+.+++++|+++++++++.++.|.+|+..
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~v----w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~   89 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRL----WSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF   89 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEE----EEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEE----EECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence            477889999999 89999999999999999    88866554442    3467899999999999999999999999832


Q ss_pred             -C---cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        128 -G---TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       128 -~---~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                       .   +....+      ..+...+.++++  +++++++++.++.|.+||..        +....+      ..+...+.+
T Consensus        90 ~~~~~~~~~~~------~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~--------~~~~~~------~~~~~~v~~  147 (313)
T 3odt_A           90 ATSGEDPLYTL------IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG--------SLVYNL------QAHNASVWD  147 (313)
T ss_dssp             CCTTSCC-CEE------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT--------EEEEEE------ECCSSCEEE
T ss_pred             ecCCCCcccch------hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC--------cEEEec------ccCCCceeE
Confidence             2   333344      445567788888  46788999999999999932        333333      234456677


Q ss_pred             EEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEe
Q psy13998        204 IAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRA  281 (319)
Q Consensus       204 ~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~  281 (319)
                      +++.+ ++.++++++.++.|++|| .+.....+.     ..+...+..++++|++. +++++.++.|++||. +++.+..
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~  220 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFS-----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT  220 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEE-TTEEEEEEC-----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEccCCCCEEEEEECCCCEEEEe-cCceEEEEe-----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence            88877 888999999999999999 444445552     12455688999999988 788889999999994 5788887


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +      ..+...+.+++++|++. +++++.|+.|++|
T Consensus       221 ~------~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iw  251 (313)
T 3odt_A          221 Y------EGHESFVYCIKLLPNGD-IVSCGEDRTVRIW  251 (313)
T ss_dssp             E------ECCSSCEEEEEECTTSC-EEEEETTSEEEEE
T ss_pred             h------hcCCceEEEEEEecCCC-EEEEecCCEEEEE
Confidence            7      56778899999999994 7788899999998

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=5.7e-24  Score=172.66  Aligned_cols=241  Identities=14%  Similarity=0.193  Sum_probs=180.4

Q ss_pred             CCcCCCCcceEEcCC----CcEEEEeCCCCeEEEeccccccccceeeEEe---------cCceeeEEcCC----CcEEEE
Q psy13998         52 PGCFTWPRGIAVGPD----NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---------TWPRGIAVGPD----NSIVVA  114 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~----g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~----g~~~~~  114 (319)
                      .+|...+.+++|+|+    ...+++++.++.|++    |+..+.+....+         ..+.+++|+++    ++++++
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~v----w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTL----YECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEE----EEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEE----EEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence            367789999999984    345666666779999    888765544322         24688999988    678999


Q ss_pred             cCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC
Q psy13998        115 DSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG  192 (319)
Q Consensus       115 ~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  192 (319)
                      ++.++.|++|| .+++.+..+      .++...+.+++++| +++++++++.++.|++||++..      +.+..+..  
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~--  156 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHY------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------TLVAIFGG--  156 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEE------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT------EEEEEECS--
T ss_pred             ecCCCEEEEEEchhceEeeee------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC------eEEEEecc--
Confidence            99999999999 567777776      45667889999999 8999999999999999999743      33333311  


Q ss_pred             CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCC----------------------CCCCcccccCcc
Q psy13998        193 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGS----------------------EGSEEGQLKFPR  249 (319)
Q Consensus       193 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~----------------------~~~~~~~~~~~~  249 (319)
                       ...+...+.+++++|+++++++++.++.|++||... +....+..                      ......+...+.
T Consensus       157 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          157 -VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             -TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             -cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence             123556788999999999999999999999999753 21111100                      000012555678


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEcC-CCc--------------eEEeecccCCCCCCCCCcceEEEccC--CcEEEEeCC
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFTP-DGQ--------------FLRAFGCWGSGDGEFKGLEGVAVMSN--GNILVCDRE  312 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~~-~g~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~v~~~~  312 (319)
                      +++++  ++++++++.++.|++|+. .++              .+..+      ..+...+.+++++|+  ++++++++.
T Consensus       236 ~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          236 CVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF------DYSQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             EEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE------ECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred             EEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc------cccCCcEEEEEEcCCCCCcEEEEEec
Confidence            89998  679999999999999994 332              24444      456667899999999  999999999


Q ss_pred             CCeEEeC
Q psy13998        313 NHRIQVF  319 (319)
Q Consensus       313 ~~~i~v~  319 (319)
                      |+.|++|
T Consensus       308 dg~i~vw  314 (366)
T 3k26_A          308 VGKLYVW  314 (366)
T ss_dssp             TSCEEEE
T ss_pred             CCcEEEE
Confidence            9999998

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.93  E-value=1.8e-21  Score=153.66  Aligned_cols=235  Identities=12%  Similarity=0.151  Sum_probs=180.2

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-E----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-A----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      .....|.+|+++++|++|++...++.|.+    ++.. ..... .    ...|.+++++++|++|++...++.|.+|+.+
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~----~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISS----LDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEE----ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEE----ECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            34678999999999999999988899999    7665 22211 1    2468899999999999998888899999977


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      ++.. .+...    .....|.+++++++|++|++...++.|..++.++..       .. +..    ......|.+++++
T Consensus        92 g~~~-~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-------~~-~~~----~~~~~~~~~i~~d  154 (300)
T 2qc5_A           92 GGFT-EYPLP----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTI-------YE-YDL----PNKGSYPAFITLG  154 (300)
T ss_dssp             SCEE-EEECS----STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-------EE-EEC----SSTTCCEEEEEEC
T ss_pred             CCeE-EecCC----CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCE-------EE-ccC----CCCCCCceeEEEC
Confidence            7653 33221    123578999999999999999888899999887532       11 100    1234578999999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCC
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS  287 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~  287 (319)
                      ++|++|++...++.|++++.+++..... .    ......|.+++++++|++|++....+.|.+|+.+++......    
T Consensus       155 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~-~----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~----  225 (300)
T 2qc5_A          155 SDNALWFTENQNNSIGRITNTGKLEEYP-L----PTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDI----  225 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECTTCCEEEEE-C----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEEC----
T ss_pred             CCCCEEEEecCCCeEEEECCCCcEEEee-C----CCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEEC----
Confidence            9999999998889999999977655422 1    233457899999999999999998899999999777654321    


Q ss_pred             CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ......|.+|+++++|++|+++..++.|.+|
T Consensus       226 -~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  256 (300)
T 2qc5_A          226 -PTPNARPHAITAGKNSEIWFTEWGANQIGRI  256 (300)
T ss_dssp             -SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             -CCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence             2345679999999999999999887777654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=1.6e-23  Score=175.58  Aligned_cols=276  Identities=13%  Similarity=0.151  Sum_probs=205.2

Q ss_pred             hhhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEc--CCCcEEEE
Q psy13998          5 SEAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVG--PDNSIVVA   72 (319)
Q Consensus         5 ~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~--~~g~~~~~   72 (319)
                      .+.+++.++.++..+.  ...|..+.++|++ ++.+++.+..+..|+...+        |...+.++++.  ++++++++
T Consensus       144 i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s  222 (464)
T 3v7d_B          144 IRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT  222 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence            4466777777666665  6788999999887 7888888888888865543        56788889988  57889999


Q ss_pred             eCCCCeEEEeccccccccceeeE-----------------------Eec--CceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         73 DSSNHRVQVCFPHFDLKTNCVFL-----------------------AFT--WPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      ++.|+.|++    |+..+.....                       .+.  ...-.+++++++++++++.++.|++|| .
T Consensus       223 ~s~d~~i~v----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~  298 (464)
T 3v7d_B          223 GSRDNTLHV----WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA  298 (464)
T ss_dssp             EETTSCEEE----EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             EcCCCcEEE----eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            999999999    8776543221                       111  111223456788999999999999999 5


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +++.+..+      .++...+.+++++++++.+++++.++.|++||+..      ++.+..+      ..+...+.++++
T Consensus       299 ~~~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~------~~~~~~~------~~h~~~v~~~~~  360 (464)
T 3v7d_B          299 QMKCLYIL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN------GELMYTL------QGHTALVGLLRL  360 (464)
T ss_dssp             TTEEEEEE------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT------TEEEEEE------CCCSSCEEEEEE
T ss_pred             CCcEEEEe------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEE------eCCCCcEEEEEE
Confidence            67777776      45667889999999999999999999999999874      2445444      345556777888


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      +  +.++++++.++.|++||.. +......       .+......++++++++++++++ ++.|++|+ .+|+.+.... 
T Consensus       361 ~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~-  429 (464)
T 3v7d_B          361 S--DKFLVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI-  429 (464)
T ss_dssp             C--SSEEEEEETTSEEEEEETTTCCEEEEE-------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT-
T ss_pred             c--CCEEEEEeCCCcEEEEECCCCceeeee-------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh-
Confidence            6  5788999999999999965 4444333       1223456788999999988887 89999999 5778776532 


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                          ..+...+.+++++ +..++++++.++.+.+|
T Consensus       430 ----~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          430 ----LKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             ----TTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             ----ccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence                3456779999997 44677777777776553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.92  E-value=2.6e-21  Score=152.61  Aligned_cols=235  Identities=11%  Similarity=0.160  Sum_probs=177.9

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-E----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-A----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      .+...|.+|+++++|++|++...++.|.+    |+.. ..... .    ...|.+++++++|++|++...++.|.+|+.+
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~----~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISC----INLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEE----ECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEE----EcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            34578999999999999999888889999    7665 22211 1    2368899999999999998888899999977


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      ++.. .+..    ......|.+++++++|++|++...++.|.+|+..+..       .... .    ......|.+++++
T Consensus        87 g~~~-~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~-------~~~~-~----~~~~~~~~~i~~~  149 (299)
T 2z2n_A           87 GIIK-EYTL----PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI-------REYE-L----PNKGSYPSFITLG  149 (299)
T ss_dssp             SCEE-EEEC----SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------EEEE-C----SSTTCCEEEEEEC
T ss_pred             CcEE-EEeC----CCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE-------EEec-C----CCCCCCCceEEEc
Confidence            6643 2321    1234578999999999999999888999999885432       1111 0    1234568999999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCC
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS  287 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~  287 (319)
                      ++|++|+++..++.|.+|+.+++......     ......|.+++++++|++|++...++.|.+|+.+++... +..   
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~---  220 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITESGDITEFKI-----PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITE-FKI---  220 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCCEEEEEC-----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EEC---
T ss_pred             CCCCEEEEeCCCCEEEEEcCCCcEEEeeC-----CCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEE-EEC---
Confidence            99999999988889999999766544311     223456889999999999999988899999999776543 311   


Q ss_pred             CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ......|.+++++++|++|+++..++.|.+|
T Consensus       221 -~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          221 -PTPNARPHAITAGAGIDLWFTEWGANKIGRL  251 (299)
T ss_dssp             -SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             -CCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence             2345679999999999999998777777654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.92  E-value=3e-24  Score=172.81  Aligned_cols=263  Identities=10%  Similarity=0.001  Sum_probs=195.4

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC-----------CcCCCCcceEEcCCCc-EEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-----------GCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ...|.+++|+|++.+++++..+..+..|....           +|...+.+++|+|+++ ++++++.++.|++    |+.
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~----wd~   86 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK----VDL   86 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE----ECS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE----EEe
Confidence            56799999999999999887777766664332           3446789999999999 9999999999999    887


Q ss_pred             -ccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-C---------CcEEEEecCCCccCCCCCCceeEEE
Q psy13998         89 -KTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-D---------GTFVGKFGSMGNKAGQLEHPHYIAV  152 (319)
Q Consensus        89 -~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~l~~  152 (319)
                       .+.....     +-..+.++++++ ++++++++.++.|++||. .         ++.+..+       .+...+.++++
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~  158 (342)
T 1yfq_A           87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-------KVKNKIFTMDT  158 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-------SSCCCEEEEEE
T ss_pred             ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-------eeCCceEEEEe
Confidence             6544322     223568899999 889999999999999993 2         2222222       24467889999


Q ss_pred             eCCCeEEEEeCCCCEEEEEecCC-ceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCCC-
Q psy13998        153 SNTNRVIVSDSNNHRVQIFDVNG-RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNG-  229 (319)
Q Consensus       153 ~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~~-  229 (319)
                      ++++  +++++.++.|.+|+++. ...    ......      ..+...+.+++++| +++++++++.++.|++|+.+. 
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEE------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSCCTTC----CCEEEE------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             cCCc--EEEEeCCCeEEEEECCccccc----cceeee------cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            9877  77778899999999875 210    011111      22345678899999 999999999999999998532 


Q ss_pred             ------CEEEEeCCCCC---CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCC-CCCcceE
Q psy13998        230 ------RVITSFGSEGS---EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGE-FKGLEGV  298 (319)
Q Consensus       230 ------~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~l  298 (319)
                            .....+.....   ...+...+.+++++|+++++++++.++.|++||. +++.+..+      ..+ ...+.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~~h~~~v~~~  300 (342)
T 1yfq_A          227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF------AKFNEDSVVKI  300 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC------CCCSSSEEEEE
T ss_pred             CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh------hcccCCCceEe
Confidence                  34444421110   0112337889999999999999999999999995 57777777      555 7788888


Q ss_pred             EEccCCcEEEEeCCCCe
Q psy13998        299 AVMSNGNILVCDRENHR  315 (319)
Q Consensus       299 ~~~~~g~~~v~~~~~~~  315 (319)
                      +  ++++++++++.|+.
T Consensus       301 ~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          301 A--CSDNILCLATSDDT  315 (342)
T ss_dssp             E--ECSSEEEEEEECTH
T ss_pred             c--CCCCeEEEEecCCc
Confidence            8  99999999998886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.6e-23  Score=172.73  Aligned_cols=240  Identities=11%  Similarity=0.140  Sum_probs=171.4

Q ss_pred             cCCCCcceEEcCCCcEE-EEeCCCCeEEEeccccccc--cceeeEEe------cCceeeEEcCCCcEEEEcCCCCeEEEE
Q psy13998         54 CFTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLK--TNCVFLAF------TWPRGIAVGPDNSIVVADSSNHRVQVF  124 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~-~~~~~~~~v~~~~~~~~~~--~~~~~~~~------~~~~~l~~~~~g~~~~~~~~~~~i~~~  124 (319)
                      +...+.+++|+|+|+++ ++++.++.|++    |+..  +......+      ..+.+++|+|+++++++++.++.|++|
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~i----wd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLV----FDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEE----EEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEE----EECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            34478999999999985 88889999999    8876  44444432      356899999999999998889999999


Q ss_pred             c-CCCcEEE-EecCCCccCCCCCCceeEEEeCC---CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        125 Q-SDGTFVG-KFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       125 ~-~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~---g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      + .+++... ...   ...+|...+.+++++|+   ++++++++.++.|++||+...      +.+..+.     ..+..
T Consensus       177 ~~~~~~~~~~~~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~-----~~h~~  242 (450)
T 2vdu_B          177 DINSIPEEKFTQE---PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC------FIVDKWL-----FGHKH  242 (450)
T ss_dssp             ETTSCCCSSCCCC---CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT------TCEEEEC-----CCCSS
T ss_pred             ecCCcccccccce---eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC------ceeeeee-----cCCCC
Confidence            9 3443221 000   11345677899999999   999999999999999998742      3333321     34556


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC-------------------CcccccCcceEEEcCCCcE
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS-------------------EEGQLKFPRGVAVDDQGYI  259 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~~~~i~~~~~g~~  259 (319)
                      .+.+++++ +++++++++.++.|++||. +++.+..+.....                   .......+.+++++|++++
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            78899999 9999999999999999995 5666666531100                   0011234678999999987


Q ss_pred             EEEeC-CCCEEEEEcC---CC---ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC------CCeEEeC
Q psy13998        260 SVGDS-GNNRIQIFTP---DG---QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE------NHRIQVF  319 (319)
Q Consensus       260 ~v~~~-~~~~i~~~~~---~g---~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~------~~~i~v~  319 (319)
                      +++++ .++.|++|+.   .+   +.+..+      ..+ ..+.+++|+|++.+++++..      ++.|++|
T Consensus       322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~------~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          322 VAFFVEATKCIIILEMSEKQKGDLALKQII------TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EEEEETTCSEEEEEEECSSSTTCEEEEEEE------ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEECCCCeEEEEEeccCCCCceeeccEe------ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence            77766 8999999997   33   344444      334 67999999996444444443      3446654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=8.4e-23  Score=171.25  Aligned_cols=256  Identities=17%  Similarity=0.243  Sum_probs=190.6

Q ss_pred             CCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---
Q psy13998         29 TTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---   97 (319)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---   97 (319)
                      +++++.++.+++.+..+..|+..        .+|...+.++++++++ ++++++.|++|++    |+..+......+   
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v----wd~~~~~~~~~~~~h  202 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV----WDIKKGCCTHVFEGH  202 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE----EETTTTEEEEEECCC
T ss_pred             EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE----EECCCCcEEEEECCC
Confidence            34466788888888888888654        3567889999999887 8899999999999    998877666544   


Q ss_pred             -cCceeeEEc--CCCcEEEEcCCCCeEEEEcC-CCcEEEEecCC-----------------CccCCCCCCceeEEEeCCC
Q psy13998         98 -TWPRGIAVG--PDNSIVVADSSNHRVQVFQS-DGTFVGKFGSM-----------------GNKAGQLEHPHYIAVSNTN  156 (319)
Q Consensus        98 -~~~~~l~~~--~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~g  156 (319)
                       ..+.++++.  ++++++++++.++.|++|+. .+.........                 ....++...+.+  +++++
T Consensus       203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~  280 (464)
T 3v7d_B          203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHG  280 (464)
T ss_dssp             SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEET
T ss_pred             CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCC
Confidence             356778887  57789999999999999994 33321110000                 001233333444  46678


Q ss_pred             eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEe
Q psy13998        157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSF  235 (319)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~  235 (319)
                      +++++++.++.|++||+...      +.+..+      ..+...+.+++++++++++++++.++.|++||. +++.+..+
T Consensus       281 ~~l~~~~~d~~i~vwd~~~~------~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          281 NIVVSGSYDNTLIVWDVAQM------KCLYIL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTT------EEEEEE------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCC------cEEEEe------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            89999999999999998743      444444      345567889999999999999999999999996 67777777


Q ss_pred             CCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                            .++...+..++++  +.++++++.|+.|++||. +++.....       .+...+..++++++++++++++ ++
T Consensus       349 ------~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          349 ------QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             ------CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-------ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             ------eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-------cCCCCccEEEEEeCCCEEEEec-CC
Confidence                  5566678888887  578999999999999995 44444443       2344567789999999998887 88


Q ss_pred             eEEeC
Q psy13998        315 RIQVF  319 (319)
Q Consensus       315 ~i~v~  319 (319)
                      .|++|
T Consensus       413 ~i~iw  417 (464)
T 3v7d_B          413 QFNIY  417 (464)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7.3e-23  Score=170.89  Aligned_cols=241  Identities=12%  Similarity=0.177  Sum_probs=175.7

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce---eeEEec----------------------------------
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC---VFLAFT----------------------------------   98 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~----------------------------------   98 (319)
                      ..+.+++++++|++++++ .++.|++    |+..+++   .+..+.                                  
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v----~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILS----FKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEE----EEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEE----EECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            345789999999966665 4678999    8776655   222111                                  


Q ss_pred             ------------------------CceeeEEcCCCcEE-EEcCCCCeEEEEc-C--CCcEEEEecCCCccCCCCCCceeE
Q psy13998         99 ------------------------WPRGIAVGPDNSIV-VADSSNHRVQVFQ-S--DGTFVGKFGSMGNKAGQLEHPHYI  150 (319)
Q Consensus        99 ------------------------~~~~l~~~~~g~~~-~~~~~~~~i~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l  150 (319)
                                              .+.+++|+|+++.+ ++++.++.|++|+ .  .++.+..+..    ..+...+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~v~~~  155 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR----FCFSKRPNAI  155 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----EECSSCEEEE
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec----ccCCCCceEE
Confidence                                    46889999999874 8888899999999 4  5666665521    1233567899


Q ss_pred             EEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---CcEEEEeCCCCeEEEEeC
Q psy13998        151 AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       151 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~i~~~~~  227 (319)
                      +|+|+++++++++.++.+.+|++.......  .....+      ..+...+.+++++|+   ++++++++.++.|++||.
T Consensus       156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~--~~~~~~------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          156 SIAEDDTTVIIADKFGDVYSIDINSIPEEK--FTQEPI------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCCCSS--CCCCCS------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCccccc--ccceee------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence            999999999999999999999986421100  000011      335567889999999   889999999999999995


Q ss_pred             -CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccC-------------------
Q psy13998        228 -NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWG-------------------  286 (319)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~-------------------  286 (319)
                       .+..+..+.     .++...+.+++|+ +++++++++.++.|++|| .+++.+..+....                   
T Consensus       228 ~~~~~~~~~~-----~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          228 PQCFIVDKWL-----FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             SCTTCEEEEC-----CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred             CCCceeeeee-----cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence             566565531     3566678999999 999999999999999999 5677766653110                   


Q ss_pred             CCCCCCCCcceEEEccCCcEEEEeC-CCCeEEeC
Q psy13998        287 SGDGEFKGLEGVAVMSNGNILVCDR-ENHRIQVF  319 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~~~v~~~-~~~~i~v~  319 (319)
                      ........+.+++++|+++++++++ .++.|++|
T Consensus       302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw  335 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL  335 (450)
T ss_dssp             ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred             ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            0002234578999999999776666 89999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=1.1e-22  Score=176.46  Aligned_cols=234  Identities=12%  Similarity=0.141  Sum_probs=184.3

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc----eeeEEe----cC-ceeeEEcC--CCcEEEEcCCCCe
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN----CVFLAF----TW-PRGIAVGP--DNSIVVADSSNHR  120 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~----~~-~~~l~~~~--~g~~~~~~~~~~~  120 (319)
                      ..+...+.+++|+|+|+++++++ ++.|++    |+..+.    .....+    .. +.+++++|  +++++++++.++.
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v----~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~   89 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFV----RCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK   89 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEE----EECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEE----EECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCE
Confidence            35567899999999999888877 789999    888765    444433    35 78999999  9999999999999


Q ss_pred             EEEEcC-CC--------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----CEEEEEecCCceeeecCceeee
Q psy13998        121 VQVFQS-DG--------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----HRVQIFDVNGRVFQSDGTFVGK  187 (319)
Q Consensus       121 i~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~  187 (319)
                      |++|+. ++        +....+      ..+...+.+++++|+++++++++.+    +.|.+|+..        +.+..
T Consensus        90 v~vw~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--------~~~~~  155 (615)
T 1pgu_A           90 VIVWGWTFDKESNSVEVNVKSEF------QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--------NSLGE  155 (615)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEE------ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--------CEEEE
T ss_pred             EEEEeCCCCcccccccccccchh------hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--------Cccee
Confidence            999995 33        444444      3455678999999999988888766    688888843        33333


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc---CcceEEEcCC-CcEEE
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK---FPRGVAVDDQ-GYISV  261 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~-g~~~v  261 (319)
                      +      ..+...+.+++++|++. ++++++.++.|++||. .++.+..+      ..+..   .+.+++++|+ +++++
T Consensus       156 ~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~  223 (615)
T 1pgu_A          156 V------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD------RTHHKQGSFVRDVEFSPDSGEFVI  223 (615)
T ss_dssp             C------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE------CSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             e------ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee------cccCCCCceEEEEEECCCCCCEEE
Confidence            3      34556788999999986 8899999999999996 45566666      44555   6889999999 99999


Q ss_pred             EeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        262 GDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       262 ~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++.++.|++|+ .+++.+..+...  ...+...+.+++++ +++++++++.|+.|++|
T Consensus       224 ~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w  279 (615)
T 1pgu_A          224 TVGSDRKISCFDGKSGEFLKYIEDD--QEPVQGGIFALSWL-DSQKFATVGADATIRVW  279 (615)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBT--TBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred             EEeCCCeEEEEECCCCCEeEEeccc--ccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence            999999999999 567777766210  01566789999999 99999999999999998

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.92  E-value=4.2e-21  Score=151.45  Aligned_cols=264  Identities=13%  Similarity=0.162  Sum_probs=185.2

Q ss_pred             ccccccCCCccchhccccc---eeeeecccCCC-----CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         22 SGIGQVGTTPRSQYLQKRR---LQFKIGSRGSE-----PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~---~~~~~~~~~~~-----~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ..+..+++++++.+.....   ....+...+..     +.....|.+|+++++|++|++...++.|.+    |+......
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~----~~~~g~~~   90 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR----ITKKGIIK   90 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE----ECTTSCEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE----ECCCCcEE
Confidence            3456666677766544322   12222211111     112357899999999999999888889999    66542211


Q ss_pred             eEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998         94 FLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  169 (319)
Q Consensus        94 ~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~  169 (319)
                      ...    ...|.+++++++|++|++...++.|.+|+.+++......     ......|.+++++++|++|++...++.|.
T Consensus        91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYEL-----PNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEC-----SSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecC-----CCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            111    236889999999999999888889999998766543321     12345789999999999999998889999


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +|+..+..       .. +..    ......|.+++++++|++|++....+.|.+|++++.... +..    ......|.
T Consensus       166 ~~~~~g~~-------~~-~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~----~~~~~~~~  228 (299)
T 2z2n_A          166 RITESGDI-------TE-FKI----PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITE-FKI----PTPNARPH  228 (299)
T ss_dssp             EECTTCCE-------EE-EEC----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EEC----SSTTCCEE
T ss_pred             EEcCCCcE-------EE-eeC----CCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEE-EEC----CCCCCCce
Confidence            99985422       11 100    123456889999999999999988899999999666443 311    22345789


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      +++++++|++|++...++.|.+|+++++.. .+..    ......|.++++ ++|++|+++..++.++
T Consensus       229 ~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~-~~~~----~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          229 AITAGAGIDLWFTEWGANKIGRLTSNNIIE-EYPI----QIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEEETTTEEE-EEEC----SSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             eEEECCCCCEEEeccCCceEEEECCCCceE-EEeC----CCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            999999999999998889999999877543 3321    233457999999 9999999987554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.92  E-value=5.3e-21  Score=150.95  Aligned_cols=230  Identities=14%  Similarity=0.162  Sum_probs=175.1

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee-EE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF-LA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT  129 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  129 (319)
                      ...|.+|+++++|++|++...++.|.+    ++.. +... ..    ...|.+++++++|++|+++..++.|.+++.+++
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~----~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~  135 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGK----LSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGT  135 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEE----ECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSC
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEE----ECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCC
Confidence            467899999999999999988899999    7665 2221 11    246889999999999999888889999997776


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      ..... .    ......|.+++++++|++|++...++.|.+++..+..       .. +..    ......|.+++++++
T Consensus       136 ~~~~~-~----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-------~~-~~~----~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          136 IYEYD-L----PNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKL-------EE-YPL----PTNAAAPVGITSGND  198 (300)
T ss_dssp             EEEEE-C----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE-------EE-EEC----SSTTCCEEEEEECTT
T ss_pred             EEEcc-C----CCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcE-------EE-eeC----CCCCCCcceEEECCC
Confidence            65332 1    1234578999999999999999888999999886532       11 111    223457899999999


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCC
Q psy13998        210 NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGD  289 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~  289 (319)
                      |++|++....+.|.+|+.++.......     ......|.+++++++|++|++...++.|.+|+++++..... .    .
T Consensus       199 g~l~v~~~~~~~i~~~~~~g~~~~~~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~-~----~  268 (300)
T 2qc5_A          199 GALWFVEIMGNKIGRITTTGEISEYDI-----PTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQ-L----Q  268 (300)
T ss_dssp             SSEEEEETTTTEEEEECTTCCEEEEEC-----SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE-C----C
T ss_pred             CCEEEEccCCCEEEEEcCCCcEEEEEC-----CCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEE-C----C
Confidence            999999988889999999776554321     22355789999999999999998889999999877654321 1    2


Q ss_pred             CCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        290 GEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       290 ~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      .....|.+++++++|++|+++. + .|..
T Consensus       269 ~~~~~~~~i~~~~~g~l~v~~~-~-~i~~  295 (300)
T 2qc5_A          269 TENAEPHGITFGKDGSVWFALK-C-KIGK  295 (300)
T ss_dssp             STTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred             ccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence            2345699999999999999887 4 5543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.6e-21  Score=156.34  Aligned_cols=257  Identities=11%  Similarity=0.155  Sum_probs=182.5

Q ss_pred             cccccCCCccchhccccce-------eeeecccCCCCCc-------CCCCcceEEcCCCc-EEEEeCCCCeEEEeccccc
Q psy13998         23 GIGQVGTTPRSQYLQKRRL-------QFKIGSRGSEPGC-------FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~-------~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~   87 (319)
                      .+..++++|++.++.....       ...+..++...++       -..|.+++++++|+ +|+++..++.|.+    |+
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~----~d  117 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTA----ID  117 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEE----EE
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEE----Ee
Confidence            4556778888776554331       3345555444332       24689999999998 7888888899999    88


Q ss_pred             cccceeeEEecC-------------ceeeEEcCCCc-EEEEc-CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEE
Q psy13998         88 LKTNCVFLAFTW-------------PRGIAVGPDNS-IVVAD-SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        88 ~~~~~~~~~~~~-------------~~~l~~~~~g~-~~~~~-~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                      ..+.+....+..             |.+++++|+|+ +|+++ ..++.|.+|| .+++....+.      .....+.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~------~~~~~~~~~~  191 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ------NTGKMSTGLA  191 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC------CCCTTCCCCE
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec------CCCCccceEE
Confidence            877666554332             68899999987 56665 3578899999 5566666663      1224578899


Q ss_pred             EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC-CC
Q psy13998        152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV-NG  229 (319)
Q Consensus       152 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~-~~  229 (319)
                      ++|+|+.+++...++.+.+||..+.      +....+....  ......+.+++++|+++ +|+++..++.|++||. ++
T Consensus       192 ~s~dg~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          192 LDSEGKRLYTTNADGELITIDTADN------KILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             EETTTTEEEEECTTSEEEEEETTTT------EEEEEEECCC--SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC------eEEEEEEcCC--CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            9999987777777899999998753      3333332111  12334577899999986 6777777799999996 56


Q ss_pred             CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc-E
Q psy13998        230 RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-I  306 (319)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~  306 (319)
                      +.+..+..        ..+.+++++|+|+ +|+++..++.|.+||. +++.+..+.       ....|.+++++|||+ +
T Consensus       264 ~~~~~~~~--------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          264 NILAKVAA--------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-------TPTHPNSLALSADGKTL  328 (353)
T ss_dssp             CEEEEEEC--------SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-------CCSEEEEEEECTTSCEE
T ss_pred             cEEEEEEc--------CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-------cCCCCCeEEEcCCCCEE
Confidence            66666521        2357899999987 7888888999999995 577776662       223689999999998 6


Q ss_pred             EEEeCC
Q psy13998        307 LVCDRE  312 (319)
Q Consensus       307 ~v~~~~  312 (319)
                      |++...
T Consensus       329 ~v~~~~  334 (353)
T 3vgz_A          329 YVSVKQ  334 (353)
T ss_dssp             EEEEEC
T ss_pred             EEEEcc
Confidence            666654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.91  E-value=1.2e-22  Score=164.69  Aligned_cols=198  Identities=9%  Similarity=0.086  Sum_probs=148.3

Q ss_pred             CCCcceEEcCCCcEEEE--eCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         56 TWPRGIAVGPDNSIVVA--DSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      ..+..++|+|||+++++  ++.|+.|++    |+..+......+   ..+.+++|+|+|+++++++.++.+..|..+++.
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~i----wd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~  209 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRI----IDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC  209 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEE----EETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEE----eECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence            45678999999997654  456899999    888877665543   357899999999999988866555545577766


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC----EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH----RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      ......    ..+...+.+++|+|+++.+++++.++    .+..|+........  .....+      ..+...+.++++
T Consensus       210 ~~~~~~----~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~--~~~~~~------~~~~~~V~~~~~  277 (365)
T 4h5i_A          210 IARKTD----FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV--LRSKQV------TNRFKGITSMDV  277 (365)
T ss_dssp             EEEECC----CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE--EEEEEE------ESSCSCEEEEEE
T ss_pred             eeeeec----CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc--eeeeee------cCCCCCeEeEEE
Confidence            544322    23445678999999999998877655    57778765321110  001111      344566789999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      +|+|+++++++.|+.|++||. +++.+..+.     .+|...+.+++|+|||+++++++.|++|++|+.
T Consensus       278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-----~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          278 DMKGELAVLASNDNSIALVKLKDLSMSKIFK-----QAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             CTTSCEEEEEETTSCEEEEETTTTEEEEEET-----TSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CCCCCceEEEcCCCEEEEEECCCCcEEEEec-----CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            999999999999999999996 566666652     467778999999999999999999999999994

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=1.7e-22  Score=166.34  Aligned_cols=238  Identities=13%  Similarity=0.166  Sum_probs=174.9

Q ss_pred             CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccce-------eeE----EecCceeeEEcCCC-cEEEEcCCC
Q psy13998         52 PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNC-------VFL----AFTWPRGIAVGPDN-SIVVADSSN  118 (319)
Q Consensus        52 ~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~~~g-~~~~~~~~~  118 (319)
                      .+|...+.+++|+| +++++++++.|+.|++    |+..+.+       ...    +...+.+++++|++ +++++++.+
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v----w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMV----WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEE----EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE----EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            46778899999999 8999999999999999    8876542       222    33467899999998 699999999


Q ss_pred             CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      +.|++|| .+++.+..+..    ..+...+.+++++|+++++++++.++.|++||++..      +.+..+.     ..+
T Consensus       154 g~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~-----~~~  218 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG------TVVAEKD-----RPH  218 (402)
T ss_dssp             SCEEEEETTTTEEEEEECT----TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT------EEEEEEE-----CSS
T ss_pred             CEEEEEECCCCCccEEEec----CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC------ceeeeec-----cCC
Confidence            9999999 56666666521    134567899999999999999999999999998743      3333331     111


Q ss_pred             C-CCceeEEEcCCCcEEEEe---CCCCeEEEEeCCC-CE-EEEeCCCCCCcccccCcceEEEcCCCcEE-EEeCCCCEEE
Q psy13998        198 L-EHPHYIAVSNTNRVIVSD---SNNHRVQIFDVNG-RV-ITSFGSEGSEEGQLKFPRGVAVDDQGYIS-VGDSGNNRIQ  270 (319)
Q Consensus       198 ~-~~~~~~~~~~~g~~~v~~---~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~-v~~~~~~~i~  270 (319)
                      . ..+..+++++++++++++   ..++.|++||... .. .....     ..+...+..++++|+++++ ++++.++.|+
T Consensus       219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~  293 (402)
T 2aq5_A          219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-----LDTSSGVLLPFFDPDTNIVYLCGKGDSSIR  293 (402)
T ss_dssp             CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-----CCCCSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred             CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-----ccCCCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence            1 236789999999999988   7899999999643 22 22221     1233457889999998766 5677899999


Q ss_pred             EEcC-CCce-EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        271 IFTP-DGQF-LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       271 ~~~~-~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|+. +++. +..+..    ..+...+.+++|+|++.+++++  ++.+++|
T Consensus       294 i~d~~~~~~~~~~l~~----~~~~~~v~~~~~sp~~~~~~s~--~~~~~~~  338 (402)
T 2aq5_A          294 YFEITSEAPFLHYLSM----FSSKESQRGMGYMPKRGLEVNK--CEIARFY  338 (402)
T ss_dssp             EEEECSSTTCEEEEEE----ECCSSCCSEEEECCGGGSCGGG--TEEEEEE
T ss_pred             EEEecCCCcceEeecc----cccCCcccceEEecccccceec--ceeEEEE
Confidence            9994 4442 333321    1245679999999999877654  4577776

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=2.6e-22  Score=165.19  Aligned_cols=232  Identities=17%  Similarity=0.208  Sum_probs=171.8

Q ss_pred             CcceEEcCCCcEEE-EeCCCCeEEEeccccccccceeeE--------EecCceeeEEcC-CCcEEEEcCCCCeEEEEc-C
Q psy13998         58 PRGIAVGPDNSIVV-ADSSNHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        58 ~~~v~~~~~g~~~~-~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~-~  126 (319)
                      ...++++++...++ +++.++.|++    |+..+.+...        +...+.+++|+| +++++++++.++.|++|+ .
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v----~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLV----LPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEE----EETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEE----EECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            45688888776444 4688999999    8775443221        344678999999 889999999999999999 4


Q ss_pred             CC-------cEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        127 DG-------TFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       127 ~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      ++       +.+..+      .+|...+.+++++|++ +++++++.++.|++||+...      +.+..+..    ..+.
T Consensus       113 ~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~----~~~~  176 (402)
T 2aq5_A          113 DGGLVLPLREPVITL------EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG------AAVLTLGP----DVHP  176 (402)
T ss_dssp             TTCCSSCBCSCSEEE------ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT------EEEEEECT----TTCC
T ss_pred             CCCCccccCCceEEe------cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC------CccEEEec----CCCC
Confidence            44       233344      4566788999999997 79999999999999998753      33333310    2344


Q ss_pred             CCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc-CcceEEEcCCCcEEEEe---CCCCEEEEEc
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK-FPRGVAVDDQGYISVGD---SGNNRIQIFT  273 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~~~v~~---~~~~~i~~~~  273 (319)
                      ..+.+++++|++.++++++.++.|++||. +++.+..+.     ..+.. .+..++++|++++++++   +.++.|++||
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-----RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec-----cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence            56789999999999999999999999996 455555541     11222 36889999999999998   7899999999


Q ss_pred             CC-Cce-EEeecccCCCCCCCCCcceEEEccCCcEE-EEeCCCCeEEeC
Q psy13998        274 PD-GQF-LRAFGCWGSGDGEFKGLEGVAVMSNGNIL-VCDRENHRIQVF  319 (319)
Q Consensus       274 ~~-g~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-v~~~~~~~i~v~  319 (319)
                      .. ++. +....     ..+...+..++++|+++++ ++++.|+.|++|
T Consensus       252 ~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          252 TKHLEEPLSLQE-----LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             TTBCSSCSEEEE-----CCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred             CccccCCceEEe-----ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence            53 332 22221     2345578999999999855 577789999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.5e-23  Score=165.14  Aligned_cols=224  Identities=9%  Similarity=0.105  Sum_probs=161.6

Q ss_pred             EcCCCcEEEEeCCCCeEEEeccccccccceeeEEe--cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE----------
Q psy13998         63 VGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF--TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF----------  130 (319)
Q Consensus        63 ~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~----------  130 (319)
                      +.++++++++++.|+.|++    |+..+......+  ..+..+.++|+   +++++.|+.|++|+.++..          
T Consensus        44 ~~~d~~~l~sg~~Dg~v~i----wd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHF----TQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEE----EEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hcCCCCEEEEECCCCcEEE----EECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            3457889999999999999    988776655543  45667777776   8888899999999855432          


Q ss_pred             EEEecCCCccCCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      +..+.     ..+...+.+++++|  +++++++++.++.|++||++..      +......     ..+...+.+++++|
T Consensus       117 ~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~-----~~~~~~i~~~~~~p  180 (343)
T 3lrv_A          117 LREIE-----VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD------SQYIVHS-----AKSDVEYSSGVLHK  180 (343)
T ss_dssp             EEEEE-----CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS------CEEEEEC-----CCSSCCCCEEEECT
T ss_pred             eEEee-----cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC------cEEEEEe-----cCCCCceEEEEECC
Confidence            22221     23345689999999  9999999999999999998743      3322221     11223478899999


Q ss_pred             CCcEEEEeCCCCeEEEEeC-CCCEE-EEeCCCCCCcc-cccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecc
Q psy13998        209 TNRVIVSDSNNHRVQIFDV-NGRVI-TSFGSEGSEEG-QLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGC  284 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~-~~~~~-~~~~~~~~~~~-~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~  284 (319)
                      ++.++++++.++.|++||. +++.. ..+      .. |...+.+++|+|+|.++++++ ++.|++||. .++.+..+..
T Consensus       181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~------~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~  253 (343)
T 3lrv_A          181 DSLLLALYSPDGILDVYNLSSPDQASSRF------PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT  253 (343)
T ss_dssp             TSCEEEEECTTSCEEEEESSCTTSCCEEC------CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCCCCccEE------eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence            9999999999999999996 45444 455      33 567889999999999999888 459999994 4444333311


Q ss_pred             cCCCCCCCCCc--ceEEEccCCcEEEEeCC-CCeEEeC
Q psy13998        285 WGSGDGEFKGL--EGVAVMSNGNILVCDRE-NHRIQVF  319 (319)
Q Consensus       285 ~~~~~~~~~~~--~~l~~~~~g~~~v~~~~-~~~i~v~  319 (319)
                      .   ..+...+  .+++|+|+|+++++++. ++.|++|
T Consensus       254 ~---~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~  288 (343)
T 3lrv_A          254 Y---TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY  288 (343)
T ss_dssp             C---BC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             c---ccccccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence            0   1111222  35999999998888777 8999987

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.91  E-value=1.4e-23  Score=165.57  Aligned_cols=233  Identities=12%  Similarity=0.077  Sum_probs=173.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ...|..++|+|++.++++++.+..+.+|+..          .+|...+.+++|+++  |+++++++.|++|++    |+.
T Consensus         9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i----Wd~   84 (297)
T 2pm7_B            9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI----WKE   84 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE----EEB
T ss_pred             cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE----EEc
Confidence            5678899999999999999888877777532          356678899999863  889999999999999    887


Q ss_pred             ccce--eeE----EecCceeeEEcCC--CcEEEEcCCCCeEEEEcCC-CcE--EEEecCCCccCCCCCCceeEEEeCC--
Q psy13998         89 KTNC--VFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSD-GTF--VGKFGSMGNKAGQLEHPHYIAVSNT--  155 (319)
Q Consensus        89 ~~~~--~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~~--  155 (319)
                      .+..  ...    +...+.+++|+|+  +.++++++.++.|++|+.. +..  ...+      .+|...+.+++++|+  
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII------DAHAIGVNSASWAPATI  158 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE------ECCSSCEEEEEECCCC-
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee------ecccCccceEeecCCcc
Confidence            6542  222    2346789999997  7899999999999999943 321  1222      345567889999986  


Q ss_pred             -----------CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC---cEEEEeCCCCe
Q psy13998        156 -----------NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN---RVIVSDSNNHR  221 (319)
Q Consensus       156 -----------g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~  221 (319)
                                 ++++++++.|+.|++||++.....  ......+      ..|...+.+++++|++   .++++++.|+.
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~--~~~~~~l------~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTL------EGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             -----------CCEEEEEETTSCEEEEEEETTTTE--EEEEEEE------CCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--EEEEEEe------cCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence                       468999999999999998642100  0122222      4566778999999984   78999999999


Q ss_pred             EEEEeCCCC---EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        222 VQIFDVNGR---VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       222 i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      |++|+.+..   ........   ..+...+.+++|+|+|+++++++.|+.|++|+.
T Consensus       231 v~iWd~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          231 CIIWTQDNEQGPWKKTLLKE---EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EEEEEESSTTSCCEEEESSS---SCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCCCccceeeeec---ccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            999996431   12222110   223456789999999999999999999999984

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.4e-21  Score=157.67  Aligned_cols=247  Identities=13%  Similarity=0.228  Sum_probs=164.3

Q ss_pred             CCCCcceEEcCCCcEEEEeC--CCCeEEEeccccccccce--eeE----EecCceeeEEcCCCc-EEEEcCCCCeEEEEc
Q psy13998         55 FTWPRGIAVGPDNSIVVADS--SNHRVQVCFPHFDLKTNC--VFL----AFTWPRGIAVGPDNS-IVVADSSNHRVQVFQ  125 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~--~~~~v~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~  125 (319)
                      ...|.+++++|+|++|+++.  .++.|.+    |++.++.  .+.    ....|.+++++|+|+ +|++...++.|.+|+
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~----~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAA----WQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEE----EEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEE----EEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            47899999999999776664  3689999    8875443  222    234788999999997 566666788999999


Q ss_pred             C--CCcE--EEEecCCCccC---CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        126 S--DGTF--VGKFGSMGNKA---GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       126 ~--~~~~--~~~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      .  ++..  +..+...+...   .....+.+++++|+|++|+++..++.|.+|++..     .+++.......   ....
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~-----~g~~~~~~~~~---~~~g  186 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD-----AGQLSEQSVLT---MEAG  186 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT-----TSCEEEEEEEE---CCTT
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC-----CCcEEEeeeEE---cCCC
Confidence            4  3332  22222211110   1224578899999999889988899999999872     11221110000   1112


Q ss_pred             CCceeEEEcCCCc-EEEEeCCCCeEEEEeCC---CCE--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEE
Q psy13998        199 EHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN---GRV--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQI  271 (319)
Q Consensus       199 ~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~  271 (319)
                      ..|..++++|+|+ +|+++..++.|.+|+.+   ++.  +..+............+.+++++|+|+ +|+++..++.|.+
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence            3578899999997 77778888999999854   332  122211111111124578899999997 6688888899999


Q ss_pred             EcCC--Cc--eEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        272 FTPD--GQ--FLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       272 ~~~~--g~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      |+.+  |.  .+..+      ..+...|.+++|+|||+ +++++..++.|.+|
T Consensus       267 ~~~~~~g~~~~~~~~------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          267 FAVTADGHLTLIQQI------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEECGGGCEEEEEEE------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEECCCCcEEEeEEE------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            9953  32  23333      23345689999999998 66777777888886

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.3e-23  Score=171.44  Aligned_cols=258  Identities=15%  Similarity=0.157  Sum_probs=176.6

Q ss_pred             hcccccccCCCccchhccccceeeeecccCCC-----C-CcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         20 LVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----P-GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        20 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ....|..++|+|++       .+.++..|...     . .+-..|.+++|+|+|+++++++.++.|++    |+.++  .
T Consensus        51 h~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~i----wd~~~--~  117 (588)
T 2j04_A           51 NSKNLFHVKEFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSV----FKDNK--M  117 (588)
T ss_dssp             BGGGTEEEEEECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEE----EETTE--E
T ss_pred             CCccEEEEEECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEE----EeCCc--e
Confidence            35678889999988       23333333211     1 33567999999999999999999999999    87532  3


Q ss_pred             eEEec--------CceeeEEcCCCcEEEEcCCCCeEEEEcCCCc--------EEEEecCCCccCCCCCCceeEEEeCCCe
Q psy13998         94 FLAFT--------WPRGIAVGPDNSIVVADSSNHRVQVFQSDGT--------FVGKFGSMGNKAGQLEHPHYIAVSNTNR  157 (319)
Q Consensus        94 ~~~~~--------~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~g~  157 (319)
                      +..+.        .+.+++|+|+|+++++++.+++|++|+..+.        .+..+....  .+|...+.+++|+|+| 
T Consensus       118 l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--~gh~~~V~sVawSPdg-  194 (588)
T 2j04_A          118 LTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--AGSKDWVTHIVWYEDV-  194 (588)
T ss_dssp             EEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--TTCCCCEEEEEEETTE-
T ss_pred             eeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc--ccccccEEEEEEcCCc-
Confidence            22221        3678999999999999999999999995443        234432111  3466789999999998 


Q ss_pred             EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCC
Q psy13998        158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGS  237 (319)
Q Consensus       158 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~  237 (319)
                       +++++.|+.+++|++.+....   +....+.     ..+...+.+++|+  |..+++++ ++.|++|+..+.....+. 
T Consensus       195 -Laass~D~tVrlWd~~~~~~~---~~~~tL~-----~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-  261 (588)
T 2j04_A          195 -LVAALSNNSVFSMTVSASSHQ---PVSRMIQ-----NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-  261 (588)
T ss_dssp             -EEEEETTCCEEEECCCSSSSC---CCEEEEE-----CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-
T ss_pred             -EEEEeCCCeEEEEECCCCccc---cceeeec-----ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-
Confidence             677788999999999864210   0111110     1233567889998  56777766 589999998776664441 


Q ss_pred             CCCCcccccCcceEEE--cCCCcEEEEeCCCCEEEEEcCC-------CceEEe----ecccCC------CCCCCCCcceE
Q psy13998        238 EGSEEGQLKFPRGVAV--DDQGYISVGDSGNNRIQIFTPD-------GQFLRA----FGCWGS------GDGEFKGLEGV  298 (319)
Q Consensus       238 ~~~~~~~~~~~~~i~~--~~~g~~~v~~~~~~~i~~~~~~-------g~~~~~----~~~~~~------~~~~~~~~~~l  298 (319)
                          .++...+.++++  +|++..++++..+|. ++|..+       +..+..    +..+..      .......+.++
T Consensus       262 ----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~v  336 (588)
T 2j04_A          262 ----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGI  336 (588)
T ss_dssp             ----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEE
T ss_pred             ----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEE
Confidence                356677899999  999999999998998 777643       221110    000100      00112347899


Q ss_pred             EEccCCcEEEEeC
Q psy13998        299 AVMSNGNILVCDR  311 (319)
Q Consensus       299 ~~~~~g~~~v~~~  311 (319)
                      +++|||+++++++
T Consensus       337 a~SPdG~~lA~~~  349 (588)
T 2j04_A          337 SLSPDGYSIAIVY  349 (588)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EECCCCCEEEEEE
Confidence            9999999888764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=9.9e-22  Score=163.28  Aligned_cols=227  Identities=13%  Similarity=0.220  Sum_probs=169.8

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---------cCceeeEEcCCCcEEEEcCCCCeEEEEc-
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---------TWPRGIAVGPDNSIVVADSSNHRVQVFQ-  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~g~~~~~~~~~~~i~~~~-  125 (319)
                      ..|.+++++|+++++++++.++.|++    |+..+.+.....         ..+.+++++++++++++++.++.|++|| 
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~----~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDV----LDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEE----EETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEE----EECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            45779999998889999999999999    888766655421         2457799999999999999999999999 


Q ss_pred             CCCcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      .+++.+..+.      .+...+.+++++++++. |+++..++.|.+||++..      +.+..+.       ....+.++
T Consensus       199 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~------~~~~~~~-------~~~~~~~~  259 (433)
T 3bws_A          199 KTLAYKATVD------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK------LEIRKTD-------KIGLPRGL  259 (433)
T ss_dssp             TTCCEEEEEE------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT------EEEEECC-------CCSEEEEE
T ss_pred             CCceEEEEEc------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC------cEEEEec-------CCCCceEE
Confidence            5567766662      34567899999998865 567778999999998743      3333332       12347889


Q ss_pred             EEcCCCcEEEEeC--------CCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC
Q psy13998        205 AVSNTNRVIVSDS--------NNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP  274 (319)
Q Consensus       205 ~~~~~g~~~v~~~--------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~  274 (319)
                      +++|+++.++++.        .++.|++||.. ++....+       .+...+.+++++|+++ +|+++..++.|.+|+.
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-------EEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-------cCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            9999997666554        47899999975 4444433       2334678999999985 7888899999999996


Q ss_pred             -CCceEEeecccCCCCCCCCCcceEEEccCCcE-EEEeCC--------------CCeEEeC
Q psy13998        275 -DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNI-LVCDRE--------------NHRIQVF  319 (319)
Q Consensus       275 -~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~v~~~~--------------~~~i~v~  319 (319)
                       +++.+..+       .+...+.+++++|+|++ ++++..              |+.|++|
T Consensus       333 ~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          333 KEKKVQKSI-------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             TTTEEEEEE-------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             CCCcEEEEe-------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence             46666665       23456899999999984 444443              4588876

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=1e-21  Score=158.78  Aligned_cols=227  Identities=12%  Similarity=0.144  Sum_probs=163.3

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEE-EEcCCCCeEEEEc-CC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIV-VADSSNHRVQVFQ-SD  127 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~-~~~~~~~~i~~~~-~~  127 (319)
                      .+|-..+.+++|+|+|+++++++.+ .+++    |+..+.....  +......+++.++++.+ ++++.++.|++|| .+
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~-~~~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLK-SFEI----YNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSS-EEEE----EEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCC-EEEE----EecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4567889999999999999988766 5789    8876555443  23356667888777654 6677788999999 67


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      ++.+..+.       +...+.+++++++.. +++  .++.|++||+....     +.+..+.      .   ....++++
T Consensus        91 ~~~~~~~~-------~~~~v~~v~~~~~~~-~~~--~~~~i~i~d~~~~~-----~~~~~~~------~---~~~~~~~s  146 (355)
T 3vu4_A           91 KQDVSRIK-------VDAPVKDLFLSREFI-VVS--YGDVISVFKFGNPW-----KRITDDI------R---FGGVCEFS  146 (355)
T ss_dssp             TEEEEEEE-------CSSCEEEEEECSSEE-EEE--ETTEEEEEESSTTC-----CBSSCCE------E---EEEEEEEE
T ss_pred             CcEEEEEE-------CCCceEEEEEcCCEE-EEE--EcCEEEEEECCCCc-----eeeEEec------c---CCceEEEE
Confidence            77777663       224678888887643 332  36889999987420     1111111      0   11224555


Q ss_pred             CCCcEEEE-eCCCCeEEEEeCCCCE-----------------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCE-
Q psy13998        208 NTNRVIVS-DSNNHRVQIFDVNGRV-----------------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNR-  268 (319)
Q Consensus       208 ~~g~~~v~-~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~-  268 (319)
                      + ..+.++ +..++.|++||.....                 +..+      .+|...+.+++|+|+|+++++++.|++ 
T Consensus       147 ~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~------~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          147 N-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI------KAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             T-TEEEEEESSCTTCEEEEECCC------------------CCEEE------CCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             c-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE------EccCCceEEEEECCCCCEEEEEeCCCCE
Confidence            5 444444 6789999999975422                 3444      567778899999999999999999998 


Q ss_pred             EEEEc-CCCceEEeecccCCCCC-CCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        269 IQIFT-PDGQFLRAFGCWGSGDG-EFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       269 i~~~~-~~g~~~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |++|| .+++.+..+.     .+ |...+.+++|+|+|+++++++.|+.|++|
T Consensus       220 v~iwd~~~~~~~~~~~-----~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFR-----RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             EEEEETTTCCEEEEEE-----CTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred             EEEEECCCCcEEEEEE-----cCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence            99999 4688888772     13 67789999999999999999999999998

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=2.1e-22  Score=167.43  Aligned_cols=244  Identities=16%  Similarity=0.256  Sum_probs=185.6

Q ss_pred             CccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---
Q psy13998         30 TPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---   98 (319)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---   98 (319)
                      ++++.+++++..+..+..|+...        +|...+.++++  +++++++++.|+.|++    |+..+......+.   
T Consensus       140 ~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v----wd~~~~~~~~~~~~h~  213 (435)
T 1p22_A          140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV----WDVNTGEMLNTLIHHC  213 (435)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE----EESSSCCEEEEECCCC
T ss_pred             EECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE----EECCCCcEEEEEcCCC
Confidence            34678888888888877776543        45567777777  7889999999999999    9988776665443   


Q ss_pred             -CceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEE---EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEec
Q psy13998         99 -WPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFV---GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV  173 (319)
Q Consensus        99 -~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  173 (319)
                       .+.+++++  ++.+++++.++.|.+||. ++...   ..+      .++...+.++++  +++++++++.++.|.+||+
T Consensus       214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~  283 (435)
T 1p22_A          214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVL------VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT  283 (435)
T ss_dssp             SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEE------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEe------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence             45677775  458888899999999994 44332   223      445567778887  6788999999999999998


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEE
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVA  252 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~  252 (319)
                      ...      +.+..+      ..+...+.++++  ++.++++++.++.|++||. +++.+..+      .++...+.+++
T Consensus       284 ~~~------~~~~~~------~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~------~~h~~~v~~~~  343 (435)
T 1p22_A          284 STC------EFVRTL------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL------EGHEELVRCIR  343 (435)
T ss_dssp             TTC------CEEEEE------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEE
T ss_pred             CcC------cEEEEE------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE------eCCcCcEEEEE
Confidence            743      444444      234455667777  4678999999999999996 57777777      55666678888


Q ss_pred             EcCCCcEEEEeCCCCEEEEEcC-CCc---------eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        253 VDDQGYISVGDSGNNRIQIFTP-DGQ---------FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       253 ~~~~g~~~v~~~~~~~i~~~~~-~g~---------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +  ++.++++++.++.|++||. .++         .+..+      ..|...+.++++  ++.++++++.|+.|++|
T Consensus       344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iw  410 (435)
T 1p22_A          344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL------VEHSGRVFRLQF--DEFQIVSSSHDDTILIW  410 (435)
T ss_dssp             C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE------CCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred             e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec------cCCCCCeEEEEe--CCCEEEEEeCCCEEEEE
Confidence            7  6788999999999999994 232         55666      567788999999  67889999999999998

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.91  E-value=2e-21  Score=155.87  Aligned_cols=269  Identities=12%  Similarity=0.130  Sum_probs=179.1

Q ss_pred             cccccCCCccchhccccceeeeeccc-----CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE-
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQFKIGSR-----GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-   96 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-   96 (319)
                      .+..+.+++....+........+..|     ....++...|.+++++++|++|+++..++.|.+    |+..+...... 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~----~d~~~~~~~~~~   82 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFK----INPETKEIKRPF   82 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEE
T ss_pred             ccceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEE----EeCCCCcEEEEe
Confidence            45566677766554443222222221     112334567899999999999999998999999    87765443322 


Q ss_pred             ---ecCceeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEE-EecCCCccCCCCCCceeEEEeCCCeEEEEeCC----
Q psy13998         97 ---FTWPRGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVG-KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN----  164 (319)
Q Consensus        97 ---~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~----  164 (319)
                         ...|.+++++++|++|++...+    +.|.+|+.++.... .+...    .....+.+++++++|++|++...    
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~~  158 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL----STAYCIDDMVFDSKGGFYFTDFRGYST  158 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----SSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----ccCCcccceEECCCCCEEEEecccccc
Confidence               2468899999999999988766    68999996654433 22211    12356899999999999998764    


Q ss_pred             --CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC--CCCEEEEeCCCC
Q psy13998        165 --NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV--NGRVITSFGSEG  239 (319)
Q Consensus       165 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~--~~~~~~~~~~~~  239 (319)
                        .+.|..++.++..      +.. +      ......+.+++++++|+ +|+++..++.|++|+.  ++.....+....
T Consensus       159 ~~~~~l~~~~~~~~~------~~~-~------~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          159 NPLGGVYYVSPDFRT------VTP-I------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             BCCEEEEEECTTSCC------EEE-E------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             CCCceEEEEeCCCCE------EEE-e------ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence              3567777766421      111 1      01123578899999986 7788877889999997  444332211000


Q ss_pred             C-CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCC
Q psy13998        240 S-EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRE  312 (319)
Q Consensus       240 ~-~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~  312 (319)
                      . .......|.+++++++|++|++...++.|.+|+++++.+..+.......++...|.++++++|++ +|+++..
T Consensus       226 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          226 PYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            0 00011357899999999999999888999999998888777743211112334789999999974 7776654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.91  E-value=6.7e-21  Score=150.18  Aligned_cols=226  Identities=16%  Similarity=0.258  Sum_probs=165.2

Q ss_pred             cCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC-C
Q psy13998         54 CFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS-D  127 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~  127 (319)
                      ++..+.+++|+++|+ +|+++..++.|.+    |+..+.  ...+    ..|.+++++++|++|++...++.|.+|+. +
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~----~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWA----WSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEE----EETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEE----EECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            356789999999998 8889988999999    877654  3322    36789999999999999888889999996 7


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----------------CCCEEEEEecCCceeeecCceeeeecc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVNGRVFQSDGTFVGKFGS  190 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~  190 (319)
                      ++.........  ......|.+++++++|++|+++.                 ..+.|..++.++.       +.. .  
T Consensus       100 g~~~~~~~~~~--~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-------~~~-~--  167 (296)
T 3e5z_A          100 GEWESIADSFE--GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-------LSA-P--  167 (296)
T ss_dssp             CCEEEEECEET--TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-------EEE-E--
T ss_pred             CcEEEEeeccC--CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-------EEE-e--
Confidence            76544332111  11234678999999999999853                 1357777776532       111 1  


Q ss_pred             cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC--CCCE---EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        191 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV--NGRV---ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                          ......|.+++++|++++++++..++.|++|+.  ++..   ...+ .     .....|.+++++++|++|++.  
T Consensus       168 ----~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-----~~~~~p~~i~~d~~G~l~v~~--  235 (296)
T 3e5z_A          168 ----IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-----VEPGKTDGLRVDAGGLIWASA--  235 (296)
T ss_dssp             ----ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-----CSSSCCCSEEEBTTSCEEEEE--
T ss_pred             ----ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-----CCCCCCCeEEECCCCCEEEEc--
Confidence                123456899999999988888888999999996  4554   2233 1     123468899999999999998  


Q ss_pred             CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEE-ccCCc-EEEEeCCCCeEE
Q psy13998        266 NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV-MSNGN-ILVCDRENHRIQ  317 (319)
Q Consensus       266 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~-~~v~~~~~~~i~  317 (319)
                      ++.|.+|+++|+.+..+.      .+.. |.+++| .++++ +|++. .++..+
T Consensus       236 ~~~v~~~~~~g~~~~~~~------~~~~-~~~~~f~~~d~~~L~v~t-~~~l~~  281 (296)
T 3e5z_A          236 GDGVHVLTPDGDELGRVL------TPQT-TSNLCFGGPEGRTLYMTV-STEFWS  281 (296)
T ss_dssp             TTEEEEECTTSCEEEEEE------CSSC-CCEEEEESTTSCEEEEEE-TTEEEE
T ss_pred             CCeEEEECCCCCEEEEEE------CCCC-ceeEEEECCCCCEEEEEc-CCeEEE
Confidence            789999999999888773      3344 899999 57877 66655 444443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.91  E-value=4.8e-22  Score=165.78  Aligned_cols=276  Identities=14%  Similarity=0.235  Sum_probs=199.5

Q ss_pred             hhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCC
Q psy13998          6 EAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSS   75 (319)
Q Consensus         6 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~   75 (319)
                      +.++..++.++..+.  ...|.++.++  +.++.+++.+..+..|+...        +|...+.+++++  ++.+++++.
T Consensus       142 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~  217 (445)
T 2ovr_B          142 KVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR  217 (445)
T ss_dssp             EEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC
Confidence            456666666665554  4566677765  56777777777777776543        355677788885  567889999


Q ss_pred             CCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeE
Q psy13998         76 NHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI  150 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  150 (319)
                      |+.|++    |+..+......+    ..+.++++  +++.+++++.++.|++|| .+++.+..+      .++...+.++
T Consensus       218 dg~i~~----wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~  285 (445)
T 2ovr_B          218 DATLRV----WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL------QGHTNRVYSL  285 (445)
T ss_dssp             TSEEEE----EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE------CCCSSCEEEE
T ss_pred             CCEEEE----EECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe------cCCCCceEEE
Confidence            999999    888766655533    34567777  677888888899999999 566777666      3455667788


Q ss_pred             EEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CC
Q psy13998        151 AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NG  229 (319)
Q Consensus       151 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~  229 (319)
                      ++  ++..+++++.++.|++||+...      +.+..+      ..+...+.++.+  +++++++++.++.|++||. ++
T Consensus       286 ~~--~~~~l~~~~~d~~i~i~d~~~~------~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          286 QF--DGIHVVSGSLDTSIRVWDVETG------NCIHTL------TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             EE--CSSEEEEEETTSCEEEEETTTC------CEEEEE------CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             EE--CCCEEEEEeCCCeEEEEECCCC------CEEEEE------cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC
Confidence            77  6788999999999999998743      444444      233344555555  4678899999999999996 67


Q ss_pred             CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998        230 RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v  308 (319)
                      +.+..+...   ..+...+.+++++  ++++++++.++.|++|+ .+++.+..+.... ...+...+++++++|++.+++
T Consensus       350 ~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~la  423 (445)
T 2ovr_B          350 QCLQTLQGP---NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-SGGSGGVVWRIRASNTKLVCA  423 (445)
T ss_dssp             CEEEEECST---TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT-TGGGTCEEEEEEECSSEEEEE
T ss_pred             cEEEEEccC---CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc-cCCCCceEEEEEecCCEEEEE
Confidence            777776321   1244567788885  57899999999999999 5677777662111 023556799999999999999


Q ss_pred             EeCCCCe----EEeC
Q psy13998        309 CDRENHR----IQVF  319 (319)
Q Consensus       309 ~~~~~~~----i~v~  319 (319)
                      +++.|+.    |.+|
T Consensus       424 ~~~~dg~~~~~l~v~  438 (445)
T 2ovr_B          424 VGSRNGTEETKLLVL  438 (445)
T ss_dssp             EECSSSSSCCEEEEE
T ss_pred             EcccCCCCccEEEEE
Confidence            9999997    7765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=1.7e-21  Score=157.50  Aligned_cols=270  Identities=12%  Similarity=0.075  Sum_probs=181.1

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCc------CCCCcceEEcCCCcEE-EEeCCCCeEEEecccccccccee
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC------FTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~g~~~-~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ...|.+++|+|++.+++.+..+. +.+|...++.      ...+..+++.++++.+ ++++.++.|++    ||..++..
T Consensus        19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i----Wd~~~~~~   93 (355)
T 3vu4_A           19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHI----WDDVKKQD   93 (355)
T ss_dssp             CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEE----EETTTTEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEE----EECCCCcE
Confidence            67899999999999998876553 3455443332      2356778888887765 66778899999    99887766


Q ss_pred             eEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcC-CC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEE-eCCCCE
Q psy13998         94 FLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQS-DG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS-DSNNHR  167 (319)
Q Consensus        94 ~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~  167 (319)
                      ...+.   .+.+++++++. ++++  .++.|++|+. ++ +.+..+..         ....+++++ ..+.++ +..++.
T Consensus        94 ~~~~~~~~~v~~v~~~~~~-~~~~--~~~~i~i~d~~~~~~~~~~~~~---------~~~~~~~s~-~~la~~sg~~~g~  160 (355)
T 3vu4_A           94 VSRIKVDAPVKDLFLSREF-IVVS--YGDVISVFKFGNPWKRITDDIR---------FGGVCEFSN-GLLVYSNEFNLGQ  160 (355)
T ss_dssp             EEEEECSSCEEEEEECSSE-EEEE--ETTEEEEEESSTTCCBSSCCEE---------EEEEEEEET-TEEEEEESSCTTC
T ss_pred             EEEEECCCceEEEEEcCCE-EEEE--EcCEEEEEECCCCceeeEEecc---------CCceEEEEc-cEEEEeCCCcCcE
Confidence            65443   55778887754 3333  2678999994 33 33322210         112345555 444444 688999


Q ss_pred             EEEEecCCceeee--cCc-------e-eeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCe-EEEEeC-CCCEEEEe
Q psy13998        168 VQIFDVNGRVFQS--DGT-------F-VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR-VQIFDV-NGRVITSF  235 (319)
Q Consensus       168 i~~~~~~~~~~~~--~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-i~~~~~-~~~~~~~~  235 (319)
                      |++||+.......  ...       . +..+      ..|...+.+++++|+|+++++++.++. |++||. +++.+..+
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~------~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLI------KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             EEEEECCC------------------CCEEE------CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCccccccccccccccCcccEEE------EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            9999987531000  000       0 2222      456677899999999999999999998 999996 57777777


Q ss_pred             CCCCCCcc-cccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-Cce--EEeecc---c------------CCCCCCCCCcc
Q psy13998        236 GSEGSEEG-QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQF--LRAFGC---W------------GSGDGEFKGLE  296 (319)
Q Consensus       236 ~~~~~~~~-~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~--~~~~~~---~------------~~~~~~~~~~~  296 (319)
                      .     .+ +...+.+++|+|+|+++++++.|+.|++|+.. +..  ...+..   .            ...........
T Consensus       235 ~-----~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (355)
T 3vu4_A          235 R-----RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC  309 (355)
T ss_dssp             E-----CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred             E-----cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence            2     13 55678999999999999999999999999953 211  111100   0            00001111236


Q ss_pred             eEEEccCCcEEEEeCCCCeEEeC
Q psy13998        297 GVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       297 ~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++|++||++++++..|+.+++|
T Consensus       310 ~~a~~~d~~~l~~~~~dg~~~~~  332 (355)
T 3vu4_A          310 KIAWISESSLVVVWPHTRMIETF  332 (355)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEE
Confidence            68999999999999999999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.90  E-value=2.8e-23  Score=165.22  Aligned_cols=232  Identities=11%  Similarity=0.022  Sum_probs=171.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcC--CCcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      .+.|..++|+|++.++++++.+..+.+|+..          .+|...+.+++|++  +++++++++.|++|++    |+.
T Consensus        13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i----Wd~   88 (316)
T 3bg1_A           13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII----WRE   88 (316)
T ss_dssp             -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE----ECC
T ss_pred             cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE----EEC
Confidence            6789999999999999999988877777532          35667899999986  4889999999999999    887


Q ss_pred             ccce--eeE----EecCceeeEEcCC--CcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCC----
Q psy13998         89 KTNC--VFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNT----  155 (319)
Q Consensus        89 ~~~~--~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----  155 (319)
                      .+..  ...    +-..+.+++|+|+  +.++++++.++.|++|+.... ........   .+|...+.+++++|+    
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN---NAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT---TSSSSCBCCCEECCCCCC-
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee---ccccCCcceEEEccccCCc
Confidence            6542  222    2336789999997  778999999999999994332 21111111   345566778888886    


Q ss_pred             -------------CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC----cEEEEeCC
Q psy13998        156 -------------NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN----RVIVSDSN  218 (319)
Q Consensus       156 -------------g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~v~~~~  218 (319)
                                   ++++++++.|+.|++||.+....   .+.+..+      ..|...+.+++++|++    .++++++.
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l------~~h~~~V~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKL------EAHSDWVRDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECC------BCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCc---cceeeec------ccCCCceEEEEecCCCCCCCceEEEEcC
Confidence                         46889999999999999863200   0122222      4456678899999986    78999999


Q ss_pred             CCeEEEEeCCC----C-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        219 NHRVQIFDVNG----R-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       219 ~~~i~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      |+.|++|+.+.    . ....+      ..+...+.+++|+|+|+++++++.|+.|++|+.
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLL------HKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEE------EECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCeEEEEEccCccccchhhhhh------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            99999999643    1 11112      223456789999999999999999999999994

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.9e-22  Score=159.13  Aligned_cols=225  Identities=11%  Similarity=0.055  Sum_probs=160.3

Q ss_pred             cCCCccchhccccceeeeecccCCCCCcC------CCCcceEEcCCCcEEEEeCCCCeEEEeccc-----cccccceeeE
Q psy13998         27 VGTTPRSQYLQKRRLQFKIGSRGSEPGCF------TWPRGIAVGPDNSIVVADSSNHRVQVCFPH-----FDLKTNCVFL   95 (319)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~   95 (319)
                      ..+.+++.++++++.+..+..|+...+..      ..+..+.++|+   +++++.|++|++|+.+     |+..+...+.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            34556788899999999988887766543      56788888887   8899999999994322     2333343233


Q ss_pred             Ee-----cCceeeEEcC--CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         96 AF-----TWPRGIAVGP--DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        96 ~~-----~~~~~l~~~~--~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      .+     ..+.+++++|  +++++++++.++.|++|| .+++......     ..+...+.+++++|++.++++++.++.
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-----AKSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-----CCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----cCCCCceEEEEECCCCCEEEEEcCCCE
Confidence            22     3578899999  999999999999999999 5566644442     122345789999999999999999999


Q ss_pred             EEEEecCCceeeecCcee-eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccc
Q psy13998        168 VQIFDVNGRVFQSDGTFV-GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQL  245 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~  245 (319)
                      |++||++..      +.+ ..+.     ..|...+.+++++|++.++++++ ++.|++||.. ++....+...   ..+.
T Consensus       194 i~iwd~~~~------~~~~~~~~-----~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~---~~~~  258 (343)
T 3lrv_A          194 LDVYNLSSP------DQASSRFP-----VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY---TIPE  258 (343)
T ss_dssp             EEEEESSCT------TSCCEECC-----CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC---BC--
T ss_pred             EEEEECCCC------CCCccEEe-----ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc---cccc
Confidence            999999743      332 2331     12556789999999999988888 5599999964 3332222110   0011


Q ss_pred             cCc--ceEEEcCCCcEEEEeCC-CCEEEEEcC
Q psy13998        246 KFP--RGVAVDDQGYISVGDSG-NNRIQIFTP  274 (319)
Q Consensus       246 ~~~--~~i~~~~~g~~~v~~~~-~~~i~~~~~  274 (319)
                      ...  .+++|+|+|+++++++. ++.|++|+.
T Consensus       259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             ---CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            112  35999999999888777 999999985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=2.8e-21  Score=154.79  Aligned_cols=237  Identities=16%  Similarity=0.248  Sum_probs=162.2

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEecccccccccee-eE---EecCcee-eEEcCCCcEEEEcCCC-C--eEEEEc-
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCV-FL---AFTWPRG-IAVGPDNSIVVADSSN-H--RVQVFQ-  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~-~~---~~~~~~~-l~~~~~g~~~~~~~~~-~--~i~~~~-  125 (319)
                      ..+ +++++|+|+ +++++..++.|.+    |+..+... ..   ....|.. ++++|+|+.+++...+ +  .|.+|| 
T Consensus        41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~----~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           41 DFV-DTAITSDCSNVVVTSDFCQTLVQ----IETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             CEE-EEEECSSSCEEEEEESTTCEEEE----EECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             Ccc-eEEEcCCCCEEEEEeCCCCeEEE----EECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            456 999999998 6777777899999    88876554 33   3346677 9999999866665555 3  899999 


Q ss_pred             CCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCE-EEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHR-VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      .+++.+..+..       ...+.+++++|+|+ +|+++..++. +.+|+++..     +........   .......|.+
T Consensus       116 ~~~~~~~~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~-----g~~~~~~~~---~~~~~~~~~~  180 (331)
T 3u4y_A          116 LKNKFISTIPI-------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD-----GVLFDTGQE---FISGGTRPFN  180 (331)
T ss_dssp             TTTEEEEEEEC-------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT-----CCEEEEEEE---EECSSSSEEE
T ss_pred             CCCCeEEEEEC-------CCCccceEECCCCCEEEEEecCCCceEEEEEECCC-----CcEeecCCc---cccCCCCccc
Confidence            45666655532       24578999999996 7777777677 999988642     111111000   0112345789


Q ss_pred             EEEcCCCc-EEEEeCCCCeEEEEeC-CCCE---EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC-C
Q psy13998        204 IAVSNTNR-VIVSDSNNHRVQIFDV-NGRV---ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD-G  276 (319)
Q Consensus       204 ~~~~~~g~-~~v~~~~~~~i~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~-g  276 (319)
                      ++++|+|+ +|+++..++.|.+||. +++.   +..+.       ....|.+++++|+|+ +|++...++.|.+|+.. +
T Consensus       181 ~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          181 ITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            99999996 7788888999999996 4555   55542       124678999999998 66777778899999965 5


Q ss_pred             ce--EEeecccC-CCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        277 QF--LRAFGCWG-SGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~--~~~~~~~~-~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +.  +..+...- ..........+++|+|||+ +|+++..++.|++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  300 (331)
T 3u4y_A          254 TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF  300 (331)
T ss_dssp             EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence            44  22221100 0011112235689999998 66788888899887

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=2.8e-20  Score=150.20  Aligned_cols=238  Identities=14%  Similarity=0.178  Sum_probs=170.1

Q ss_pred             CCCcceEEcCCCc-EEEEeCC------CCeEEEeccccccccceeeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEE
Q psy13998         56 TWPRGIAVGPDNS-IVVADSS------NHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVF  124 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~  124 (319)
                      ..|.+++++|+|+ +|++...      ++.|.+    |+..+.+....+   ..|.+++++++|+ +|+++..++.|.+|
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYR----LDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEE----ECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEE----EcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            4678999999987 5555544      678999    888776655543   3688999999987 78888888999999


Q ss_pred             c-CCCcEEEEecCCCccC---CCCCCceeEEEeCCCe-EEEEe-CCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        125 Q-SDGTFVGKFGSMGNKA---GQLEHPHYIAVSNTNR-VIVSD-SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~g~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      | .+++.+..+.......   .....|.+++++|+|+ +|+++ ..++.|.+||..+.      +.+..+.      ...
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~------~~~~~~~------~~~  184 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI------KLKTAIQ------NTG  184 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT------EEEEEEC------CCC
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC------ceEEEec------CCC
Confidence            9 5677766664321100   0112378899999886 55665 45788999998743      3444332      122


Q ss_pred             CCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-C
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-D  275 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~  275 (319)
                      ..|.+++++|+|+.+++...++.|.+||. +++....+....  .++...+.+++++|+|+ +|+++..++.|.+||. +
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC--SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC--CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            34788999999987766677899999996 455555543211  12334577899999986 7778777899999995 6


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ++.+..+..        ..+.+++++|+|+ +|+++..++.|.+|
T Consensus       263 ~~~~~~~~~--------~~~~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          263 GNILAKVAA--------PESLAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             CCEEEEEEC--------SSCCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEc--------CCCceEEECCCCCEEEEEECCCCeEEEE
Confidence            777776631        2357799999998 88888889999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=4.1e-22  Score=160.46  Aligned_cols=242  Identities=8%  Similarity=0.079  Sum_probs=179.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC------------CcCCCCcceEEcC--CCcEEEEeCCCCeEEEecccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHF   86 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~   86 (319)
                      ...|.+++|+|++.+++++..+..+..|+...            +|...+.+++|+|  +++++++++.|+.|++    |
T Consensus        11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v----w   86 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL----W   86 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE----E
T ss_pred             ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE----E
Confidence            57799999999999999998887777775432            4567889999999  5899999999999999    8


Q ss_pred             ccccc---------eeeEE----ecCceeeEEcCC--CcEEEEcCCCCeEEEEc-CCCcEEEEec-------CCCccCCC
Q psy13998         87 DLKTN---------CVFLA----FTWPRGIAVGPD--NSIVVADSSNHRVQVFQ-SDGTFVGKFG-------SMGNKAGQ  143 (319)
Q Consensus        87 ~~~~~---------~~~~~----~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~-~~~~~~~~~~-------~~~~~~~~  143 (319)
                      +..+.         .....    ...+.+++++|+  ++++++++.++.|++|| .+++.+..+.       .......+
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence            87654         22222    236789999999  89999999999999999 4443221111       11111245


Q ss_pred             CCCceeEEEeCC---CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC----cEEEEe
Q psy13998        144 LEHPHYIAVSNT---NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN----RVIVSD  216 (319)
Q Consensus       144 ~~~~~~l~~~~~---g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~v~~  216 (319)
                      ...+.+++++|+   +.++++++.++.+..|+......    ..+..+      ..+...+.+++++|++    ++++++
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~------~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----HVAAKL------PGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE----EEEEEC------CCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce----eeeeec------CCCCcceeEEEECCCCCCcceEEEEE
Confidence            567899999997   88899998898887776653211    112222      3455678899999998    899999


Q ss_pred             CCCCeEEEEeCCC-----------------------------------------------CEEEEeCCCCCCcccccCcc
Q psy13998        217 SNNHRVQIFDVNG-----------------------------------------------RVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       217 ~~~~~i~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +.++.|++||...                                               ..+..+      .++...+.
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~  310 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH------DDHNGEVW  310 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE------CTTSSCEE
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE------ecccccEE
Confidence            9999999999643                                               222223      34556789


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~  282 (319)
                      +++++|+++++++++.|+.|++|+. .++.+..+
T Consensus       311 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          311 SVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            9999999999999999999999994 45444443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.6e-21  Score=173.64  Aligned_cols=246  Identities=10%  Similarity=0.064  Sum_probs=174.8

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDG  128 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~  128 (319)
                      ||...|.+++|+|+|+++++++.|+.|++    |+..+......+   ..+.+++|+| |+++++++.++.|++|| .++
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~l----w~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHI----YGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEE----ECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEE----EeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            55678999999999999999999999999    887655544333   3578999999 88888999999999999 567


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc-CCcCCCCCCceeEEEc
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVS  207 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  207 (319)
                      +.+..+.       +...+.+++++|+++++++++.++.|++||+++.....  ..+...... .....+...+.+++++
T Consensus        90 ~~~~~~~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~--~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           90 KVLTTVF-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS--FKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             SEEEEEE-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE--EEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             cEEEEEc-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc--ceeccccccccccccCCCCeEEEEEc
Confidence            7776663       22567999999999999999999999999998643210  000000000 1113456678899999


Q ss_pred             CCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCC------------CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        208 NTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEG------------SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       208 ~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      |++ .++++++.++.| +||.. ++.+..+....            ....+...+.+++|+|+|.++++++.|+.|++||
T Consensus       161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            964 788889999999 99964 45555553210            0011235688999999999999999999999999


Q ss_pred             C-CCceEEe--ecccCCC-------C---CCCCCcceEEEc----cCC-cEEEEeCCC
Q psy13998        274 P-DGQFLRA--FGCWGSG-------D---GEFKGLEGVAVM----SNG-NILVCDREN  313 (319)
Q Consensus       274 ~-~g~~~~~--~~~~~~~-------~---~~~~~~~~l~~~----~~g-~~~v~~~~~  313 (319)
                      . +|+.+..  +......       .   .+...+.+++|+    |++ .++++++.+
T Consensus       240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            5 6776543  2100000       0   123468899994    554 577777554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.90  E-value=1.8e-20  Score=145.46  Aligned_cols=222  Identities=11%  Similarity=0.124  Sum_probs=172.1

Q ss_pred             CCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCc
Q psy13998         65 PDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGN  139 (319)
Q Consensus        65 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  139 (319)
                      ..++++++++.++.|.+    |+.++++.+..+.     .+++++++|+|+++++  .++.|+.||++|+.+..+...  
T Consensus         3 ~~~~~lv~~~~~~~v~~----~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~~G~~~W~~~~~--   74 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAI----INKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITRDGRELWNIAAP--   74 (276)
T ss_dssp             CCCEEEEECTTCSEEEE----EETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECTTSCEEEEEECC--
T ss_pred             CCCcEEEeeCCCCEEEE----EECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECCCCCEEEEEcCC--
Confidence            34689999999999999    9987777766554     4788999999999884  467899999999999888532  


Q ss_pred             cCCCCCCceeEEEeCCCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC
Q psy13998        140 KAGQLEHPHYIAVSNTNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN  218 (319)
Q Consensus       140 ~~~~~~~~~~l~~~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  218 (319)
                         ....+.++.+.++|+++++.+. ++++..++.+|       +.+..+............+..+++.++|+++++...
T Consensus        75 ---~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           75 ---AGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-------EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             ---TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-------CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred             ---CCccccccEECCCCCEEEEecCCCCEEEEEeCCC-------CEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence               1134577888999999999877 78888888766       444444322211222345667888999999999999


Q ss_pred             CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcce
Q psy13998        219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      ++.|+.||++|+.+.++...       ..|.++...++|++++++..+++|..+|++ |+.+..+.........+..|.+
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~-------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~  217 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLS-------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ  217 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECS-------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred             CCEEEEECCCCCEEEEEECC-------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence            99999999999998887421       357788889999999999988999999987 9999888643222224566899


Q ss_pred             EEEccCCcEEEEeC
Q psy13998        298 VAVMSNGNILVCDR  311 (319)
Q Consensus       298 l~~~~~g~~~v~~~  311 (319)
                      ++..++|++|+++.
T Consensus       218 ~~~~~~G~i~v~~~  231 (276)
T 3no2_A          218 LFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             ceEcCCCCEEEEec
Confidence            99999999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.90  E-value=4.8e-21  Score=159.74  Aligned_cols=249  Identities=14%  Similarity=0.250  Sum_probs=189.2

Q ss_pred             CCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-
Q psy13998         28 GTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-   98 (319)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-   98 (319)
                      ++++++.++++++.+..+..|+..        .+|...+.+++++  ++++++++.|+.|++    |+..+......+. 
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v----wd~~~~~~~~~~~~  197 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV----WNAETGECIHTLYG  197 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE----EETTTTEEEEEECC
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE----EECCcCcEEEEECC
Confidence            356678889988888888777654        3456778888887  678999999999999    9888776665443 


Q ss_pred             ---CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecC
Q psy13998         99 ---WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus        99 ---~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  174 (319)
                         .+.+++++  ++.+++++.++.|.+|| .+++.+..+      .++...+.++++  +++++++++.++.|.+||+.
T Consensus       198 h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~  267 (445)
T 2ovr_B          198 HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL------MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE  267 (445)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE------ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred             CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE------cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence               45677774  56788889999999999 567777766      345567788887  67888999999999999987


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                      ..      +.+..+      ..+...+.++++  ++..+++++.++.|++||. +++.+..+      ..+...+.++.+
T Consensus       268 ~~------~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~v~~~~~  327 (445)
T 2ovr_B          268 TE------TCLHTL------QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL------TGHQSLTSGMEL  327 (445)
T ss_dssp             GT------EEEEEE------CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE------CCCCSCEEEEEE
T ss_pred             CC------cEeEEe------cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE------cCCcccEEEEEE
Confidence            42      444444      234455677777  6788899999999999995 67777776      444445566665


Q ss_pred             cCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        254 DDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       254 ~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                        +++++++++.++.|++||. +++.+..+...   ..+...+.+++++  ++++++++.|+.|++|
T Consensus       328 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          328 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGP---NKHQSAVTCLQFN--KNFVITSSDDGTVKLW  387 (445)
T ss_dssp             --ETTEEEEEETTSCEEEEETTTCCEEEEECST---TSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             --eCCEEEEEeCCCeEEEEECCCCcEEEEEccC---CCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence              4678999999999999994 67777777321   1256678888885  5799999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.8e-22  Score=162.09  Aligned_cols=232  Identities=13%  Similarity=0.079  Sum_probs=176.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ...|.+++|+|++.+++++..+..+.+|...          .+|...+.+++|+++  ++++++++.|+.|++    |+.
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i----wd~   86 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI----WKE   86 (379)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE----EEE
T ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE----EEc
Confidence            6789999999999999998877776666532          356678899999977  899999999999999    888


Q ss_pred             ccce--eeEE----ecCceeeEEcCC--CcEEEEcCCCCeEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeC---
Q psy13998         89 KTNC--VFLA----FTWPRGIAVGPD--NSIVVADSSNHRVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSN---  154 (319)
Q Consensus        89 ~~~~--~~~~----~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~---  154 (319)
                      .+..  ....    ...+.+++++|+  ++++++++.++.|++||.. +.  ....+      ..+...+.+++++|   
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII------DAHAIGVNSASWAPATI  160 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE------ECCTTCEEEEEECCCC-
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe------cCCCCceEEEEEcCccc
Confidence            7664  3332    236789999999  8899999999999999943 32  22222      34556789999999   


Q ss_pred             ----------CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---CcEEEEeCCCCe
Q psy13998        155 ----------TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHR  221 (319)
Q Consensus       155 ----------~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~  221 (319)
                                ++.++++++.++.|++||+......  ......+      ..+...+.+++++|+   +.++++++.++.
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~------~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTL------EGHSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEE------CCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEE------ecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence                      6899999999999999998642100  0122222      345567889999999   899999999999


Q ss_pred             EEEEeCCCC----EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        222 VQIFDVNGR----VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       222 i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      |++|+....    .......    ..+...+.+++|+|+|+++++++.++.|++|+.
T Consensus       233 i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          233 CIIWTQDNEQGPWKKTLLKE----EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             EEEEEESSTTSCCEEEESSS----SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             EEEEeCCCCCccceeeeecc----ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            999996432    2222211    224456789999999999999889999999994

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.89  E-value=4.6e-21  Score=157.75  Aligned_cols=245  Identities=15%  Similarity=0.190  Sum_probs=174.1

Q ss_pred             CcCCCCcceEEcCC---CcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCC----CeEE
Q psy13998         53 GCFTWPRGIAVGPD---NSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSN----HRVQ  122 (319)
Q Consensus        53 ~~~~~~~~v~~~~~---g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~----~~i~  122 (319)
                      +.+..|.+|+++++   |++|+++.. +.|++    ++..+.....   .+..|.+++++++|++|+++..+    ..+.
T Consensus       136 ~~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~----id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~  210 (433)
T 4hw6_A          136 GAFDNIWRMMFDPNSNYDDLYWVGQR-DAFRH----VDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIY  210 (433)
T ss_dssp             CCCSCCCEEEECTTTTTCEEEEECBT-SCEEE----EETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEE
T ss_pred             cccCCCceEEEccccCCCEEEEEeCC-CCEEE----EECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEE
Confidence            36889999999985   889999877 89999    7775444333   34579999999999999998643    2355


Q ss_pred             EEcCCCcEE--EEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        123 VFQSDGTFV--GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       123 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      .++..+...  ..+       .....|.++++++ +|++|++...+++|++++.++.      .....+...    ....
T Consensus       211 ~~~~~~~~~~~~~~-------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g------~~~~~~~~~----~~~~  273 (433)
T 4hw6_A          211 LFTRASGFTERLSL-------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG------TLTEEEVMM----DTKG  273 (433)
T ss_dssp             EECGGGTTCCEEEE-------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC------CEEEEEEEC----SCCS
T ss_pred             EEECCCCeeccccc-------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC------eEEEEEecc----CCCC
Confidence            555333211  111       1346789999999 8999999999999999998732      221111111    1123


Q ss_pred             CceeEEEcCCCc-EEEEeCCCCeEEEEeCCC---CE---EEEeC---CCCC-----CcccccCcceEEE---------cC
Q psy13998        200 HPHYIAVSNTNR-VIVSDSNNHRVQIFDVNG---RV---ITSFG---SEGS-----EEGQLKFPRGVAV---------DD  255 (319)
Q Consensus       200 ~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~---~~---~~~~~---~~~~-----~~~~~~~~~~i~~---------~~  255 (319)
                      .+.+++++|+++ +|+++..+++|++++.++   ..   ....+   ..+.     ....+..|.++++         ++
T Consensus       274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~  353 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED  353 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred             CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence            456799999996 999999999999988652   11   11111   1111     1235678999999         88


Q ss_pred             CCcEEEEeCCCCEEEEEcCCCceEEeecccC-----------CCCCCCCCcceEEEc-cCCcEEEEeCCCCeEEeC
Q psy13998        256 QGYISVGDSGNNRIQIFTPDGQFLRAFGCWG-----------SGDGEFKGLEGVAVM-SNGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~-~~g~~~v~~~~~~~i~v~  319 (319)
                      +|++|+++..+++|++++++|......+...           .....+..|.+|+++ ++|.+|+++..+++|+.+
T Consensus       354 ~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          354 EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            8999999999999999999996655544311           112356789999999 789999999999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=3.1e-20  Score=152.22  Aligned_cols=215  Identities=19%  Similarity=0.334  Sum_probs=161.3

Q ss_pred             CcEEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccC
Q psy13998         67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA  141 (319)
Q Consensus        67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~  141 (319)
                      +.++++++.++.|++    |+..+......+   ..+.+++++|+++ +++++..++.|++|| .+++.+..+..     
T Consensus         2 ~~l~vs~~~d~~v~v----~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-----   72 (391)
T 1l0q_A            2 TFAYIANSESDNISV----IDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----   72 (391)
T ss_dssp             EEEEEEETTTTEEEE----EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----
T ss_pred             CEEEEEcCCCCEEEE----EECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-----
Confidence            357889999999999    888776665533   3678999999997 557777899999999 56777666632     


Q ss_pred             CCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCC
Q psy13998        142 GQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN  219 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~  219 (319)
                       + ..+.+++++|+++ +++++..++.|.+||+.+.      +.+..+.       ....+.+++++|+++ +++++..+
T Consensus        73 -~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~------~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~  137 (391)
T 1l0q_A           73 -G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN------TVAGTVK-------TGKSPLGLALSPDGKKLYVTNNGD  137 (391)
T ss_dssp             -S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-------CSSSEEEEEECTTSSEEEEEETTT
T ss_pred             -C-CCccceEECCCCCEEEEEECCCCEEEEEECCCC------eEEEEEe-------CCCCcceEEECCCCCEEEEEeCCC
Confidence             1 3789999999886 5567778899999999853      3333331       123578899999997 55888889


Q ss_pred             CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcc
Q psy13998        220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLE  296 (319)
Q Consensus       220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~  296 (319)
                      +.|++||. +++.+..+.      . ...+..++++|+|+ +|+++..++.|++||. +++.+..+       .+...+.
T Consensus       138 ~~v~~~d~~~~~~~~~~~------~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~  203 (391)
T 1l0q_A          138 KTVSVINTVTKAVINTVS------V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-------KVEAAPS  203 (391)
T ss_dssp             TEEEEEETTTTEEEEEEE------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-------ECSSEEE
T ss_pred             CEEEEEECCCCcEEEEEe------c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-------ecCCCcc
Confidence            99999996 455555542      1 23578999999986 5578889999999995 45555555       2345789


Q ss_pred             eEEEccCCcEEEEeC---CCCeEEeC
Q psy13998        297 GVAVMSNGNILVCDR---ENHRIQVF  319 (319)
Q Consensus       297 ~l~~~~~g~~~v~~~---~~~~i~v~  319 (319)
                      +++++|+|+++++++   .++.|++|
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEE
Confidence            999999998555554   68888887

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.89  E-value=2.4e-20  Score=148.26  Aligned_cols=237  Identities=19%  Similarity=0.296  Sum_probs=169.2

Q ss_pred             CcCCCCcceEEcCCCcEEEE-------eCCCCeEEEeccccccccceeeE--------EecCceeeEEcCC-CcEEEEcC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVA-------DSSNHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGPD-NSIVVADS  116 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~-g~~~~~~~  116 (319)
                      ..+..|.+++++++|++|++       +..++.|.+    |+..+.....        ....|.+++++++ |++|++..
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~----~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~   90 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILR----IDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEE----ECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEE----EeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence            34678999999999999998       667789999    7765443321        2246889999999 89999876


Q ss_pred             CCCeEEEEcCCCcEEEE-ecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---------------CEEEEEecCCceeee
Q psy13998        117 SNHRVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---------------HRVQIFDVNGRVFQS  180 (319)
Q Consensus       117 ~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---------------~~i~~~~~~~~~~~~  180 (319)
                      .+ .|.+|+.+++.... ....  .......|.+++++++|++|++...+               +.|..++.++.    
T Consensus        91 ~~-~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~----  163 (314)
T 1pjx_A           91 RL-GLLVVQTDGTFEEIAKKDS--EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ----  163 (314)
T ss_dssp             TT-EEEEEETTSCEEECCSBCT--TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC----
T ss_pred             CC-CEEEEeCCCCEEEEEeccC--CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCC----
Confidence            44 79999966665433 2111  01123468899999999999998765               57888876542    


Q ss_pred             cCceeeeecccCCcCCCCCCceeEEEc----CCC-cEEEEeCCCCeEEEEeCC--CCEEE--EeCCCCCCcccc-cCcce
Q psy13998        181 DGTFVGKFGSMGNKAGQLEHPHYIAVS----NTN-RVIVSDSNNHRVQIFDVN--GRVIT--SFGSEGSEEGQL-KFPRG  250 (319)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~i~~~~~~--~~~~~--~~~~~~~~~~~~-~~~~~  250 (319)
                         +....       .....|.+++++    +++ .+|+++..++.|++|+.+  +....  .+...   ..+. ..|.+
T Consensus       164 ---~~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~---~~~~~~~p~~  230 (314)
T 1pjx_A          164 ---MIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI---PGTHEGGADG  230 (314)
T ss_dssp             ---EEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC---CCCSSCEEEE
T ss_pred             ---EEEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC---CCCCCCCCCc
Confidence               11111       122457889999    998 578888888999999953  43211  11000   1122 45889


Q ss_pred             EEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        251 VAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       251 i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ++++++|++|++...++.|.+|+++ |+.+..+.      .+...|.+++++++|+ +|+++..++.|..|
T Consensus       231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~  295 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE------CSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe------CCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence            9999999999999888999999987 77766662      3346799999999998 89998887777654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=6.8e-21  Score=148.30  Aligned_cols=189  Identities=12%  Similarity=0.068  Sum_probs=129.2

Q ss_pred             CCCcEEEEcC--CCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeC---CCeEEEEeCCCCEEEEEecCCceee
Q psy13998        107 PDNSIVVADS--SNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       107 ~~g~~~~~~~--~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      ++++++.+..  .++.|++|+  ++|+.+...      ..+...+..++|++   ++.++++++.|++|++||+.+    
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T----  212 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT----  212 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT----
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCCceeeee------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC----
Confidence            4677776633  688999999  567776655      34445567788887   679999999999999999984    


Q ss_pred             ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE------------EeCCCCeEEEEeCC-CCEEEEeCCCCCCccccc
Q psy13998        180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV------------SDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v------------~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~  246 (319)
                        |+.+..+...   ..+.....+++|+|+|.+++            +++.++.|++||+. ++.+..+... ...++..
T Consensus       213 --Gk~l~tL~g~---~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~p~Gh~~  286 (356)
T 2w18_A          213 --GQLLKKMHID---DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-LPPGQAG  286 (356)
T ss_dssp             --CCEEEEEECC---C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-CCTTCCC
T ss_pred             --CcEEEEEcCC---CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-ccCCCcc
Confidence              3555555311   11223456678999998764            45678899999975 4444332100 0012221


Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcc-eEEEccCCcEEEEeCCCCeEEeC
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLE-GVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..  +..+.++.++++++.|++|++|| .+|+.+.++      .+|...+. .++|+|||+++++++.|++|++|
T Consensus       287 ~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          287 RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALL------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEE------CCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEe------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence            22  23333377899999999999999 578888888      56666555 58999999999999999999998

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=1.8e-21  Score=159.53  Aligned_cols=239  Identities=8%  Similarity=0.063  Sum_probs=155.2

Q ss_pred             EEcCCCcEEEEeCCCCeEEEeccccccccceeeE---------EecCceeeEEcC--------CCcEEEEcCCCCeEEEE
Q psy13998         62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---------AFTWPRGIAVGP--------DNSIVVADSSNHRVQVF  124 (319)
Q Consensus        62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~--------~g~~~~~~~~~~~i~~~  124 (319)
                      .+.++++++++++.|++|++    |+..+.....         |...+.+++|+|        +++++++++.|++|++|
T Consensus        96 ~~~~~~~~las~~~d~~v~l----w~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRL----IITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEE----EEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             ecCCCCCEEEEEeCCCcEEE----EECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            33446678999999999999    8877654432         334678999987        78899999999999999


Q ss_pred             c-CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCc--------eeeeec-----
Q psy13998        125 Q-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGT--------FVGKFG-----  189 (319)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~-----  189 (319)
                      | .++..+...      ..+...+.+++|+|++ +++++++.++.|++||+..........        ......     
T Consensus       172 d~~~~~~~~~~------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          172 RLTDEGPILAG------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             EEETTEEEEEE------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             ECCCCceeeee------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            9 455554444      3445678899999977 578899999999999987532111000        000000     


Q ss_pred             ccCCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCC------------CcccccCcceEEEcC
Q psy13998        190 SMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGS------------EEGQLKFPRGVAVDD  255 (319)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~i~~~~  255 (319)
                      .......+.....++.+. ++++.+++++.++.+++||.. +.....+.....            ............+.+
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence            000112344556677776 789999999999999999964 222222210000            000111223334444


Q ss_pred             --CCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        256 --QGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       256 --~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                        ++.++++++.++.|++||. .++.+...      ..+...+.+++|+|||+++++++.++.+
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~------~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNSIP------IQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCEEE------EECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEe------cCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence              3456777888999999994 56655554      3456689999999999999999888764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=1.8e-21  Score=160.99  Aligned_cols=240  Identities=12%  Similarity=0.135  Sum_probs=180.9

Q ss_pred             hhhhccchhhhhhhhhh----cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEE
Q psy13998          4 PSEAKNINSCFLLQTLL----VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVV   71 (319)
Q Consensus         4 ~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~   71 (319)
                      +.+++|..++.++..+.    ...|.+++|+|++.++++++.+..+.+|+...+        |...+.+++  .++++++
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s--~~~~~l~  203 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILS  203 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEe--eCCCEEE
Confidence            34678888887776654    346999999999999999999988888876544        334455554  4678999


Q ss_pred             EeCCCCeEEEeccccccccceee-E----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcE----EEEecCCCccC
Q psy13998         72 ADSSNHRVQVCFPHFDLKTNCVF-L----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTF----VGKFGSMGNKA  141 (319)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~  141 (319)
                      +++.++.+++    |+....... .    +...+..+.+.++++.+++++.++.+.+|+. .++.    +...      .
T Consensus       204 sgs~d~~i~~----~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~------~  273 (420)
T 4gga_A          204 SGSRSGHIHH----HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF------T  273 (420)
T ss_dssp             EEETTSEEEE----EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE------C
T ss_pred             EEeCCCceeE----eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee------c
Confidence            9999999999    776543322 2    3346788999999999999999999999993 3331    1222      3


Q ss_pred             CCCCCceeEEEeCCC-eEEEE--eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe--
Q psy13998        142 GQLEHPHYIAVSNTN-RVIVS--DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD--  216 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g-~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~--  216 (319)
                      .+...+.+++++|.+ .++++  ++.|+.|++||+...      +....+.       ....+..+.++++++.++++  
T Consensus       274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~-------~~~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVD-------AHSQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEE-------CSSCEEEEEEETTTTEEEEEEC
T ss_pred             ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeec-------cccceeeeeecCCCCeEEEEEe
Confidence            455678899999854 55554  457899999998753      3333332       22346778889888766654  


Q ss_pred             CCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        217 SNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       217 ~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ..++.|++||. +++.+..+      .+|...+.+++|+|+|.++++++.|++|++|+.
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l------~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             cCCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            36899999995 67888888      677788999999999999999999999999994

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.89  E-value=2e-21  Score=161.20  Aligned_cols=229  Identities=10%  Similarity=0.165  Sum_probs=173.7

Q ss_pred             cccccccCCCcc-chhccccceeeeecccCCC------------------CCcCCCCcceEEcCCCc-EEEEeCCCCeEE
Q psy13998         21 VSGIGQVGTTPR-SQYLQKRRLQFKIGSRGSE------------------PGCFTWPRGIAVGPDNS-IVVADSSNHRVQ   80 (319)
Q Consensus        21 ~~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~~~~g~-~~~~~~~~~~v~   80 (319)
                      ...|..+.++|+ +.+++++..+..+..|...                  .+|-..+.+|+|+|+++ ++++++.++.|+
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence            567899999996 6788877666555444322                  24556789999999988 999999999999


Q ss_pred             Eecccccccccee-------eE----EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC-C---cEEEEecCCCccCCCC
Q psy13998         81 VCFPHFDLKTNCV-------FL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD-G---TFVGKFGSMGNKAGQL  144 (319)
Q Consensus        81 ~~~~~~~~~~~~~-------~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~-~---~~~~~~~~~~~~~~~~  144 (319)
                      +    |++.+...       ..    +...+.+++++| ++.++++++.++.|++||.. +   +.+..+      ..+.
T Consensus       208 v----wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~------~~~~  277 (430)
T 2xyi_A          208 L----WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV------DAHT  277 (430)
T ss_dssp             E----EETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE------ECCS
T ss_pred             E----EeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe------ecCC
Confidence            9    77765211       11    233578999999 56799999999999999943 3   333333      3455


Q ss_pred             CCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeE
Q psy13998        145 EHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRV  222 (319)
Q Consensus       145 ~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i  222 (319)
                      ..+.+++++|++. ++++++.++.|.+||++..     ...+..+      ..+...+.+++++|++ .++++++.++.|
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-----~~~~~~~------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i  346 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNL-----KLKLHSF------ESHKDEIFQVQWSPHNETILASSGTDRRL  346 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-----TSCSEEE------ECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-----CCCeEEe------ecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence            6789999999875 7889999999999998742     1233333      2345678899999988 578899899999


Q ss_pred             EEEeCCC---------------CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCC
Q psy13998        223 QIFDVNG---------------RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       223 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g  276 (319)
                      ++||...               ..+...      .++...+.+++++|++. ++++++.++.|++|+...
T Consensus       347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          347 HVWDLSKIGEEQSTEDAEDGPPELLFIH------GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEEEGGGTTCCCCHHHHHHCCTTEEEEC------CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             EEEeCCCCccccCccccccCCcceEEEc------CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            9999643               455554      45666799999999998 999999999999999654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2.2e-20  Score=153.82  Aligned_cols=244  Identities=17%  Similarity=0.231  Sum_probs=175.2

Q ss_pred             CcCCCCcceEEcC--CCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCc-EEEEcCCCC----eEE
Q psy13998         53 GCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNS-IVVADSSNH----RVQ  122 (319)
Q Consensus        53 ~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~-~~~~~~~~~----~i~  122 (319)
                      +.+..|.+|+++|  ++++|+++.. +.|++    +++.+.....   ....|.+|+++++|+ +|+++..++    .+.
T Consensus       134 ~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~----id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          134 GGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRL----IDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             BCCSCCCEEEEETTEEEEEEEEEBT-EEEEE----EETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred             cCCCCCCEEEECCCCCCeEEEEeCC-CcEEE----EECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence            3578999999997  4788998876 88999    7776543322   345799999999998 899886433    455


Q ss_pred             EEcCCCcEE--EEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        123 VFQSDGTFV--GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       123 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      .++.++...  ..+.       ....|.+++++| +|.+|+++..+++|.+++.++....    .+..       .....
T Consensus       209 ~~~~~g~~~~~~~l~-------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~----~~~~-------~~~~~  270 (430)
T 3tc9_A          209 ILTRESGFKVITELT-------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT----PLFT-------IQDSG  270 (430)
T ss_dssp             EEEGGGTSCSEEEEE-------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE----EEEE-------CSSSS
T ss_pred             EEeCCCceeeeeeec-------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEEE-------cCCCC
Confidence            566555432  2221       235789999999 8999999999999999998864221    1111       11225


Q ss_pred             CceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC--E---EEEe-CC---CCCC-----cccccCcc-eEEEc--------C
Q psy13998        200 HPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--V---ITSF-GS---EGSE-----EGQLKFPR-GVAVD--------D  255 (319)
Q Consensus       200 ~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~--~---~~~~-~~---~~~~-----~~~~~~~~-~i~~~--------~  255 (319)
                      .|.+++++|+|+ +|+++..+++|++++.++.  .   ...+ +.   .+..     ...+..|. +++++        +
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            689999999997 9999999999999986542  1   1111 11   1111     23467788 78884        5


Q ss_pred             CCcEEEEeCCCCEEEEEcCCCceEEeeccc-----C------CCCCCCCCcceEEEcc-CCcEEEEeCCCCeEEeC
Q psy13998        256 QGYISVGDSGNNRIQIFTPDGQFLRAFGCW-----G------SGDGEFKGLEGVAVMS-NGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~-----~------~~~~~~~~~~~l~~~~-~g~~~v~~~~~~~i~v~  319 (319)
                      +|++|+++..+++|++++++|+.....+..     +      .....+..|.+|++++ +|.+|+++..+++|+.+
T Consensus       351 ~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          351 EYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             CEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            689999999999999999999766555431     1      1123467899999999 58899999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.89  E-value=1.8e-20  Score=155.74  Aligned_cols=221  Identities=15%  Similarity=0.273  Sum_probs=168.9

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTF  130 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~  130 (319)
                      ..+.++.  .+++++++++.++.|++    |+..+......+.    .+.++++  +++++++++.++.|++|| .+++.
T Consensus       134 ~~v~~~~--~d~~~l~~g~~dg~i~i----wd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          134 KGVYCLQ--YDDQKIVSGLRDNTIKI----WDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CCEEEEE--CCSSEEEEEESSSCEEE----EESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             CcEEEEE--ECCCEEEEEeCCCeEEE----EeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            3455554  47899999999999999    8887766655443    4566666  678999999999999999 67777


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      +..+      ..+...+.+++++  +..+++++.++.|.+||+......   ......      ..+...+.++++  ++
T Consensus       206 ~~~~------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~------~~~~~~v~~~~~--~~  266 (435)
T 1p22_A          206 LNTL------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI---TLRRVL------VGHRAAVNVVDF--DD  266 (435)
T ss_dssp             EEEE------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC---EEEEEE------CCCSSCEEEEEE--ET
T ss_pred             EEEE------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc---eeeeEe------cCCCCcEEEEEe--CC
Confidence            7777      4556677888876  458888999999999998743110   011111      334455677777  67


Q ss_pred             cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCC
Q psy13998        211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSG  288 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~  288 (319)
                      +++++++.++.|++||. +++.+..+      ..+...+.+++++  ++++++++.++.|++|| .+++.+..+      
T Consensus       267 ~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~------  332 (435)
T 1p22_A          267 KYIVSASGDRTIKVWNTSTCEFVRTL------NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL------  332 (435)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE------
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEE------cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE------
Confidence            78999999999999995 56777776      4555567777774  67899999999999999 468888888      


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++...+.++++  ++.++++++.|+.|++|
T Consensus       333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVW  361 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             eCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence            567778898888  67899999999999998

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.88  E-value=2e-20  Score=145.45  Aligned_cols=226  Identities=24%  Similarity=0.326  Sum_probs=161.7

Q ss_pred             cccccCCCccchhcc-cccee---eeecccCC-----CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998         23 GIGQVGTTPRSQYLQ-KRRLQ---FKIGSRGS-----EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV   93 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~-~~~~~---~~~~~~~~-----~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (319)
                      ....+++++++.+.. .....   ..+...+.     ....+..|.+|+++++|++|+++. ++.|.+    |+..+...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~----~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVT----LAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEE----ECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEE----EeCCCceE
Confidence            445566777776555 32221   22221111     123346899999999999999988 889999    77654332


Q ss_pred             eE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998         94 FL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  169 (319)
Q Consensus        94 ~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~  169 (319)
                      ..    .+..|.+++++++|++|+++..++.|.+|+..........     ......|.+++++++|++|++...++.|.
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-----CCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-----cccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence            21    2357899999999999999888889999984432222111     22345789999999999999998889999


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      +|+.++...      . ...     ......|.+++++++|++|+++..++.|.+|+.++.......     ...+..|.
T Consensus       175 ~~~~~~~~~------~-~~~-----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~p~  237 (270)
T 1rwi_B          175 KLEAESNNQ------V-VLP-----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-----FTGLNTPL  237 (270)
T ss_dssp             EECTTTCCE------E-ECC-----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-----CCSCSCEE
T ss_pred             EEecCCCce------E-eec-----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-----cCCCCCce
Confidence            999876321      1 110     123367899999999999999998999999998876544431     22346789


Q ss_pred             eEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998        250 GVAVDDQGYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       250 ~i~~~~~g~~~v~~~~~~~i~~~~~~  275 (319)
                      +++++++|++|+++..+++|.+|+..
T Consensus       238 ~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          238 AVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             eEEECCCCCEEEEECCCCEEEEEcCC
Confidence            99999999999999999999999965

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=6.5e-20  Score=155.70  Aligned_cols=266  Identities=12%  Similarity=0.121  Sum_probs=183.9

Q ss_pred             cCCCccchhccccceeeeecccCCCCCcC-------CCCcceEEcCCCcEEEEeCCCCeEEEecccccc--ccceeeEEe
Q psy13998         27 VGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL--KTNCVFLAF   97 (319)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~   97 (319)
                      ..++|++.++.+...+..+..|+...++.       ..|++++++|+|+++++++.++.|.+    |+.  .+......+
T Consensus       143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v----~D~~~~t~~~~~~i  218 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM----IDLWAKEPTKVAEI  218 (543)
T ss_dssp             SCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEE----EETTSSSCEEEEEE
T ss_pred             cccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEE----EECcCCCCcEEEEE
Confidence            34788888777776666666665544321       23789999999998888778899999    888  666555443


Q ss_pred             ---cCceeeEEcC----CCcEE-EEcCCCCeEEEEc-CCCcEEEEecCCCccCC-----CCCCceeEEEeCCC-eEEEEe
Q psy13998         98 ---TWPRGIAVGP----DNSIV-VADSSNHRVQVFQ-SDGTFVGKFGSMGNKAG-----QLEHPHYIAVSNTN-RVIVSD  162 (319)
Q Consensus        98 ---~~~~~l~~~~----~g~~~-~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~g-~~~~~~  162 (319)
                         ..|.+++++|    +|+.+ ++...++.|.+|| .+++.+..+...+....     ....+.++++++++ .++++.
T Consensus       219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence               3689999999    98755 4444689999999 67777777754321100     12367889999965 677788


Q ss_pred             CCCCEEEEEecCCceeeecCceee--eecccCCcCCCCCCceeEEEcCCCcE-EEEeCCCCeEEEEeC-CCCEEEEeCCC
Q psy13998        163 SNNHRVQIFDVNGRVFQSDGTFVG--KFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDV-NGRVITSFGSE  238 (319)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~i~~~~~-~~~~~~~~~~~  238 (319)
                      ..+++|.+||....      +.+.  .+       .....|.+++++|+|++ |+++..++.|.+||. +++.+..+...
T Consensus       299 ~~~g~i~vvd~~~~------~~l~~~~i-------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          299 KETGKVLLVNYKDI------DNLTVTSI-------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             TTTTEEEEEECTTS------SSCEEEEE-------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             CCCCeEEEEEecCC------CcceeEEe-------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence            88999999998742      1111  11       12345788999999975 556667889999996 56665555211


Q ss_pred             CCCcccccCcceEE-EcCC-CcEEEEeC-CCCEEEEEcCC--------CceEEeecccCCCCCCCCCcceEEEccCCcEE
Q psy13998        239 GSEEGQLKFPRGVA-VDDQ-GYISVGDS-GNNRIQIFTPD--------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL  307 (319)
Q Consensus       239 ~~~~~~~~~~~~i~-~~~~-g~~~v~~~-~~~~i~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  307 (319)
                      .  ..+..  .++. ++|+ |.+|+++. .+++|.+|+.+        ++.++++      ..+...+..++++|||+.+
T Consensus       366 ~--~ph~g--~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l------~~~g~~~~~v~~~pdg~~l  435 (543)
T 1nir_A          366 K--TPHPG--RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL------QGQGGGSLFIKTHPKSSHL  435 (543)
T ss_dssp             S--SBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE------ECSCSCCCCEECCTTCCEE
T ss_pred             C--CCCCC--CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE------EcCCCCceEEEcCCCCCcE
Confidence            0  01111  2333 4677 67888876 68999999953        6778887      4555677889999999977


Q ss_pred             EEeC-------CCCeEEeC
Q psy13998        308 VCDR-------ENHRIQVF  319 (319)
Q Consensus       308 v~~~-------~~~~i~v~  319 (319)
                      .++.       .++.|++|
T Consensus       436 ~v~~~~~~~~~~~~~v~v~  454 (543)
T 1nir_A          436 YVDTTFNPDARISQSVAVF  454 (543)
T ss_dssp             EECCTTCSSHHHHTCEEEE
T ss_pred             EEecCCCCCcccCceEEEE
Confidence            7665       25678876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=3.7e-19  Score=143.01  Aligned_cols=239  Identities=17%  Similarity=0.260  Sum_probs=156.2

Q ss_pred             CCCCcceEEcCCCcEE-EEeCCCCeEEEeccccccc--cce--eeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEEc
Q psy13998         55 FTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLK--TNC--VFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVFQ  125 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~-~~~~~~~~v~~~~~~~~~~--~~~--~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~~  125 (319)
                      ...|.+++++|+|+.+ +++..++.|.+    |++.  ++.  ....+   ..|..++++|+|+ +|+++..++.|.+|+
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLA----YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEE----EEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEE----EEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            3578999999999954 44454599999    7765  222  22222   3688999999997 566666788999999


Q ss_pred             C-CCc---EEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeee--cccCCcCCCC
Q psy13998        126 S-DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF--GSMGNKAGQL  198 (319)
Q Consensus       126 ~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  198 (319)
                      . ++.   ....+.       ....+.+++++|+++ +|+++..++.|.+|++...     ++.....  ...   ....
T Consensus       113 ~~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~---~~~~  177 (343)
T 1ri6_A          113 LEDGLPVGVVDVVE-------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD-----GHLVAQDPAEVT---TVEG  177 (343)
T ss_dssp             EETTEEEEEEEEEC-------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT-----SCEEEEEEEEEE---CSTT
T ss_pred             CCCCcccccccccc-------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC-----Cceeeecccccc---cCCC
Confidence            5 332   222221       224578899999986 5555558899999998741     1221100  000   1122


Q ss_pred             CCceeEEEcCCCc-EEEEeCCCCeEEEEeCC---CCE--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEE
Q psy13998        199 EHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN---GRV--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQI  271 (319)
Q Consensus       199 ~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~  271 (319)
                      ..|.+++++|+++ +|+++..++.|.+|+.+   +..  ...+............+.+++++|+|+ +|+++..++.|.+
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  257 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence            4678899999997 66777788999999974   222  222211111111234567899999986 6667778999999


Q ss_pred             EcCC--Cc---eEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        272 FTPD--GQ---FLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       272 ~~~~--g~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      |+.+  +.   .+..+      ... ..|.+++|+|+|+ +++++..++.|.+|
T Consensus       258 ~d~~~~~~~~~~~~~~------~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQ------PTE-TQPRGFNVDHSGKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             EEECTTSCCEEEEEEE------ECS-SSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             EEEcCCCCceEEeeee------cCC-CccceEEECCCCCEEEEecCCCCeEEEE
Confidence            9954  22   23333      122 2389999999998 56666578999887

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=4.2e-19  Score=143.92  Aligned_cols=253  Identities=15%  Similarity=0.233  Sum_probs=155.7

Q ss_pred             cCCCCcceEEcCCCcEEEEeCC----CCeEEEeccccccccc-eeeE---Ee----cCceeeEEcCCCc-EEEEcCCCCe
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSS----NHRVQVCFPHFDLKTN-CVFL---AF----TWPRGIAVGPDNS-IVVADSSNHR  120 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~----~~~v~~~~~~~~~~~~-~~~~---~~----~~~~~l~~~~~g~-~~~~~~~~~~  120 (319)
                      +...|..++++|+|+++++.+.    ++.|.+    |+.... +...   ..    ..|..+++  +++ ++++...++.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~----~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA----FAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS  121 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE----EEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEE----EEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence            4578999999999996555544    379999    766542 2221   21    35677888  554 7777777899


Q ss_pred             EEEEcCC--CcEE---EEecCCCc----cCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCc-eeeeec
Q psy13998        121 VQVFQSD--GTFV---GKFGSMGN----KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGT-FVGKFG  189 (319)
Q Consensus       121 i~~~~~~--~~~~---~~~~~~~~----~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~  189 (319)
                      |.+|+.+  +...   ......+.    .......+++++++|+|+ +|+++..++.+.+|+++...-....+ +.....
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            9999943  3211   11111110    011234568899999997 67778788999999876421000001 110000


Q ss_pred             ccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCC-C
Q psy13998        190 SMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSG-N  266 (319)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~-~  266 (319)
                      ...........|.+++++|+|+ +|+++..++.|.+|+.+...+..+........+...|.+++++|+|+ +|++... +
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence            0000012234678999999996 66777678999999964333222211111122344578999999997 5567766 7


Q ss_pred             CEEEEEcCC---Cce--EEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        267 NRIQIFTPD---GQF--LRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       267 ~~i~~~~~~---g~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      +.|.+|+.+   |+.  +..+      .. ...|.+++|+|||+ +++++..++.|.+|
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~------~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQ------LT-GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEE------EC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CEEEEEEEcCCCCcEEEeeEe------cC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            899999853   442  3333      12 34689999999998 66666678888885

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.7e-19  Score=146.95  Aligned_cols=251  Identities=18%  Similarity=0.210  Sum_probs=174.5

Q ss_pred             CcCCCCcceEEcC--CCcEEEEeCCCCeEEEeccccccccceeeEE-------ecCceeeEE-------cCCCc-EEEEc
Q psy13998         53 GCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------FTWPRGIAV-------GPDNS-IVVAD  115 (319)
Q Consensus        53 ~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~l~~-------~~~g~-~~~~~  115 (319)
                      +.+..|.+|+++|  ++++|++....+.|++    +|+++......       +..|.+|++       +++|+ +|+++
T Consensus       136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~----ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad  211 (496)
T 3kya_A          136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQL----IDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI  211 (496)
T ss_dssp             BCCCSEEEEEEETTEEEEEEEEEETEEEEEE----EETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred             cccCCCCEEEEccCCCCEEEEEECCCCeEEE----EECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence            4466899999998  3678999887788998    77765444331       235899999       99987 88887


Q ss_pred             CCCC------eEEEEcCC--CcEE-----EEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecC-------
Q psy13998        116 SSNH------RVQVFQSD--GTFV-----GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN-------  174 (319)
Q Consensus       116 ~~~~------~i~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~-------  174 (319)
                      ..++      .|.+++..  |...     ..+.       ....|.+++++| ++.+|++...++.|.+++++       
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~  284 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK  284 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeec-------cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence            7652      37777532  3321     1121       235779999999 78999999999999999986       


Q ss_pred             Ccee-ee-----cCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC--EE---EEe-C---CC
Q psy13998        175 GRVF-QS-----DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--VI---TSF-G---SE  238 (319)
Q Consensus       175 ~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~--~~---~~~-~---~~  238 (319)
                      +... .+     .+ ....+..    ......|.+|+++|+|+ +|+++..+++|++++.++.  .+   ..+ +   ..
T Consensus       285 tg~~~tp~~~~~~g-~~~~l~~----~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~  359 (496)
T 3kya_A          285 NGGSWDPIVKNNPN-TFKQLFT----IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS  359 (496)
T ss_dssp             TTCCCCCBGGGCTT-TEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred             Cceeeccccccccc-ccceeEe----cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence            3221 00     00 0111100    12234688999999997 8999999999999875542  11   111 1   11


Q ss_pred             CC-----CcccccCcc-eEEEc-------CCCcEEEEeCCCCEEEEEcCCCceEEeeccc-----------C------CC
Q psy13998        239 GS-----EEGQLKFPR-GVAVD-------DQGYISVGDSGNNRIQIFTPDGQFLRAFGCW-----------G------SG  288 (319)
Q Consensus       239 ~~-----~~~~~~~~~-~i~~~-------~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~-----------~------~~  288 (319)
                      +.     ....+..|. +++++       ++|.+|+++..+++|++++++|......+..           +      ..
T Consensus       360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~  439 (496)
T 3kya_A          360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLRE  439 (496)
T ss_dssp             CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTT
T ss_pred             cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchh
Confidence            11     124567899 77886       6789999999999999999999665444321           1      11


Q ss_pred             CCCCCCcceEEEccC-CcEEEEeCCCCeEEeC
Q psy13998        289 DGEFKGLEGVAVMSN-GNILVCDRENHRIQVF  319 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~-g~~~v~~~~~~~i~v~  319 (319)
                      ...+..|.+|+++++ |.+|+++..+++||.+
T Consensus       440 ~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          440 VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             TCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            235788999999996 9999999999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.87  E-value=1.5e-19  Score=144.06  Aligned_cols=238  Identities=14%  Similarity=0.141  Sum_probs=167.0

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-----------------------EecCceeeEEcC-C
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------------------AFTWPRGIAVGP-D  108 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~-~  108 (319)
                      +.+..|.+++++++|++++++..++.|..    |+..+.....                       ....|.++++++ +
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIK----YEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEE----ECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEE----ECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            45788999999999996666778899999    7665432211                       023688999997 7


Q ss_pred             CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-----------------CCEEEE
Q psy13998        109 NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-----------------NHRVQI  170 (319)
Q Consensus       109 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-----------------~~~i~~  170 (319)
                      |++|+++... .|.+++.++..+..+..... ......|.++++++ +|++|+++..                 .+.|.+
T Consensus        92 g~l~v~d~~~-~i~~~d~~~g~~~~~~~~~~-~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQLYIVDCYY-HLSVVGSEGGHATQLATSVD-GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TEEEEEETTT-EEEEECTTCEECEEEESEET-TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CcEEEEECCC-CEEEEeCCCCEEEEecccCC-CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            8999997654 58899976544333321110 12235689999999 9999999754                 367888


Q ss_pred             EecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC---EEEEeCCCCCCccccc
Q psy13998        171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR---VITSFGSEGSEEGQLK  246 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~  246 (319)
                      ++..+....       .+      ......|.+++++++|+ +|+++..+++|++|+.++.   ....+.     . ...
T Consensus       170 ~d~~~~~~~-------~~------~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-----~-~~g  230 (322)
T 2fp8_A          170 YDPSTKETT-------LL------LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-----K-IPN  230 (322)
T ss_dssp             EETTTTEEE-------EE------EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-----E-CSS
T ss_pred             EeCCCCEEE-------Ee------ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-----e-CCC
Confidence            887643211       11      11235688999999986 8899888899999997642   122221     0 112


Q ss_pred             CcceEEEcCCCcEEEEeCC----------CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        247 FPRGVAVDDQGYISVGDSG----------NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~----------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                       |.+|+++++|++|++...          .+.|.+++++|+.+..+.....  .....+.++++ .+|++|+++..++.|
T Consensus       231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g--~~~~~~~~~~~-~~g~L~v~~~~~~~i  306 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPP--FAGEHFEQIQE-HDGLLYIGTLFHGSV  306 (322)
T ss_dssp             -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTT--TTTSCCCEEEE-ETTEEEEECSSCSEE
T ss_pred             -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCC--CccccceEEEE-eCCEEEEeecCCCce
Confidence             899999999999999865          5789999999998887753211  11456788877 478999999888888


Q ss_pred             EeC
Q psy13998        317 QVF  319 (319)
Q Consensus       317 ~v~  319 (319)
                      .+|
T Consensus       307 ~~~  309 (322)
T 2fp8_A          307 GIL  309 (322)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.9e-21  Score=169.98  Aligned_cols=237  Identities=13%  Similarity=0.061  Sum_probs=177.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ...|.+++|+|++.+++++..+..+..|+..          .+|...+.+++|+++  ++++++++.|+.|++    |+.
T Consensus         9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v----wd~   84 (753)
T 3jro_A            9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI----WKE   84 (753)
T ss_dssp             CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE----EEE
T ss_pred             cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE----EEC
Confidence            6789999999999999999877777666532          356678999999987  899999999999999    888


Q ss_pred             ccce--eeE----EecCceeeEEcCC--CcEEEEcCCCCeEEEEcCCCc---EEEEecCCCccCCCCCCceeEEEeC---
Q psy13998         89 KTNC--VFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSDGT---FVGKFGSMGNKAGQLEHPHYIAVSN---  154 (319)
Q Consensus        89 ~~~~--~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~---  154 (319)
                      .+..  ...    +...+.+++++|+  ++++++++.++.|++||....   ....+      ..+...+.+++++|   
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~------~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII------DAHAIGVNSASWAPATI  158 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE------ECCSSCEEEEEECCCC-
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe------ecCCCceEEEEecCccc
Confidence            7654  222    2346789999999  899999999999999994322   12222      34556789999999   


Q ss_pred             ----------CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---CcEEEEeCCCCe
Q psy13998        155 ----------TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHR  221 (319)
Q Consensus       155 ----------~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~  221 (319)
                                ++.++++++.++.|++||++....  .......+      ..+...+.+++++|+   +.++++++.++.
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~------~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTL------EGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             --------CGGGCCEEEEETTSCEEEEEEETTTT--EEEEEEEE------CCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             ccccccccCCCCCEEEEEECCCeEEEEeccCCcc--cceeeeee------cCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence                      588999999999999999864210  00122222      345567899999999   899999999999


Q ss_pred             EEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998        222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~  275 (319)
                      |++||.................+...+.+++++|+|.++++++.++.|++|+.+
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            999996432100000001112345568899999999999999999999999954

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.86  E-value=3.6e-19  Score=140.16  Aligned_cols=229  Identities=15%  Similarity=0.103  Sum_probs=160.5

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      ...+.+..|++ ++.+|+++..++.|..    |+..+.....  ....+.+++++++|++|++.  +..|.+||.++...
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~----~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCR----WDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA   85 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEE----EETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEE----EECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence            45678999998 5679999999999999    7776543321  22467899999999988876  56899999654333


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      ..+..... ......+++++++++|++|++..           ..+.|..++.++..       ...       ......
T Consensus        86 ~~~~~~~~-~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-------~~~-------~~~~~~  150 (297)
T 3g4e_A           86 VVLATVDN-DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-------KKY-------FDQVDI  150 (297)
T ss_dssp             EEEEECCT-TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-------EEE-------EEEESB
T ss_pred             EEEEecCC-CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-------EEE-------eecccc
Confidence            33321110 11234678999999999999763           23456666655421       111       112356


Q ss_pred             ceeEEEcCCCc-EEEEeCCCCeEEEEeC---CCCEE--EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        201 PHYIAVSNTNR-VIVSDSNNHRVQIFDV---NGRVI--TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       201 ~~~~~~~~~g~-~~v~~~~~~~i~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      |++++++|+++ +|+++..++.|++|+.   +|...  +.+...   ......|.+++++++|++|++....++|.+|++
T Consensus       151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~---~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL---EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC---CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC---CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            88999999985 7888888899999984   34331  111100   122346899999999999999988899999998


Q ss_pred             C-CceEEeecccCCCCCCCCCcceEEEc-cCCc-EEEEeCCC
Q psy13998        275 D-GQFLRAFGCWGSGDGEFKGLEGVAVM-SNGN-ILVCDREN  313 (319)
Q Consensus       275 ~-g~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~-~~v~~~~~  313 (319)
                      + |+.+..+      ......|++++|. ||++ +|++....
T Consensus       228 ~tG~~~~~i------~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          228 VTGKRLQTV------KLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             TTCCEEEEE------ECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             CCceEEEEE------ECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            6 9988887      3444679999998 7765 88887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=2.9e-20  Score=144.75  Aligned_cols=214  Identities=11%  Similarity=0.042  Sum_probs=138.3

Q ss_pred             cccccCCCcc----chhccccceeeeecccCCCCCcCCCCcceEEcCCCcEEEEeC--CCCeEEEeccccccccceee-E
Q psy13998         23 GIGQVGTTPR----SQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADS--SNHRVQVCFPHFDLKTNCVF-L   95 (319)
Q Consensus        23 ~i~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~   95 (319)
                      .|..++++|+    ++++..+....             .++++   ++|+++.+..  .++.|++    |+....+.. .
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~-------------~v~~l---~~g~lv~ss~~g~d~~V~~----~~~s~dG~~~~  172 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIK-------------AVLGL---TKRRLVSSSGTLSDQQVEV----MTFAEDGGGKE  172 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEE-------------EEEEE---TTTEEEEEESSSTTCEEEE----EEECTTSCEEE
T ss_pred             ceEEEEECCCccccccEEEeCCCeE-------------EEEec---CCCcEEEecccCCCCcEEE----EEECCCCceee
Confidence            4556666666    55555544332             22333   5677777744  6899999    887543332 2


Q ss_pred             ----EecCceeeEEcC---CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-------
Q psy13998         96 ----AFTWPRGIAVGP---DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-------  160 (319)
Q Consensus        96 ----~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-------  160 (319)
                          +-.....++|++   ++.++++++.|++|++|| .+|+.+..+...   ..+...+..++|+|+|++++       
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~---~~~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID---DSYQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC---C---CCCEEEEEEETTEEEEEEC----
T ss_pred             eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC---CcceeeeEEEEECCCCCEEEEeccCCC
Confidence                223556778887   678999999999999999 678888887421   11234567789999998774       


Q ss_pred             -----EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEE
Q psy13998        161 -----SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITS  234 (319)
Q Consensus       161 -----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~  234 (319)
                           +++.++++++||..+.      +.+..+.... ..++....  +..+.++.++++++.|+.|++||. +++.+.+
T Consensus       250 ~w~laSGs~D~tIklWd~~tg------k~l~v~~~~~-p~Gh~~~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t  320 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTT------LSVGVMLYCL-PPGQAGRF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL  320 (356)
T ss_dssp             --------CCEEEEEEETTTT------EEEEEEEECC-CTTCCCCE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             cceeeccCCCcEEEEEECCCC------EEEEEEEeec-cCCCccee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence                 4567889999998754      3222211000 01111111  223334678899999999999995 6788888


Q ss_pred             eCCCCCCcccccCcc-eEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        235 FGSEGSEEGQLKFPR-GVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       235 ~~~~~~~~~~~~~~~-~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      +      .++...+. .++|+|+|+++++++.|++|++|+.
T Consensus       321 L------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          321 L------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             E------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             e------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            7      45555555 5899999999999999999999984

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.86  E-value=1.2e-19  Score=145.72  Aligned_cols=250  Identities=15%  Similarity=0.166  Sum_probs=162.8

Q ss_pred             CCCcceEEcCCCcEEEEeCC--CC--eEEEeccccccccceee----------EEecCceeeEEcCCCcEEEEcCC----
Q psy13998         56 TWPRGIAVGPDNSIVVADSS--NH--RVQVCFPHFDLKTNCVF----------LAFTWPRGIAVGPDNSIVVADSS----  117 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~--~~--~v~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~g~~~~~~~~----  117 (319)
                      ..|.+|+++++|++|++...  ++  +|..    ++  +....          .++..|.+++++++|++|+++..    
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~----~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAE----LT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEE----EE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEE----EC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence            57999999999999999642  23  4444    33  12211          13568899999999999999876    


Q ss_pred             -CCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeC---CCCEEEEEecCCcee-e-ecC--cee--
Q psy13998        118 -NHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDS---NNHRVQIFDVNGRVF-Q-SDG--TFV--  185 (319)
Q Consensus       118 -~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~---~~~~i~~~~~~~~~~-~-~~~--~~~--  185 (319)
                       ..+|.+||. +++.+..+........+...+.++++++ ++.+|+++.   .++.|.+||+.+... . ..+  ...  
T Consensus        91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence             579999995 5776766654322122335679999997 578999988   788999999864221 1 000  000  


Q ss_pred             -eeecccCCc------CC----CCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC----CCEE-EEeCCCCCCcccccCc
Q psy13998        186 -GKFGSMGNK------AG----QLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN----GRVI-TSFGSEGSEEGQLKFP  248 (319)
Q Consensus       186 -~~~~~~~~~------~~----~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~----~~~~-~~~~~~~~~~~~~~~~  248 (319)
                       ..+...+..      ..    ....+.+|+++|+|+ +|++......++.++..    +... ..+...-...+....|
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p  250 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC  250 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC
Confidence             000000000      00    113578999999984 77777777788888732    1100 0000000001122368


Q ss_pred             ceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        249 RGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      .+++++++|++|++...+++|.+|++ +|+......     ......|.+++++++|++|+++...+++
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-----~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-----DEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-----CGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-----CCceecCCeeEECCCCcEEEEeCccccc
Confidence            89999999999999999999999998 887544332     1235679999999999999998866544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.86  E-value=1.1e-19  Score=149.64  Aligned_cols=204  Identities=13%  Similarity=0.194  Sum_probs=152.2

Q ss_pred             CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-----------------EecCceeeEEcC-CCcEE
Q psy13998         52 PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------------AFTWPRGIAVGP-DNSIV  112 (319)
Q Consensus        52 ~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~-~g~~~  112 (319)
                      .+|-..+.+++|+| +++++++++.++.|++    |+..+.....                 +...+.+++++| +++++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVL----YDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEE----EECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEE----EECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            45778999999999 9999999999999999    7776543221                 334678999999 66788


Q ss_pred             EEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC---CCeEEEEeCCCCEEEEEecCCceeeecCceeeee
Q psy13998        113 VADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF  188 (319)
Q Consensus       113 ~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  188 (319)
                      ++++.++.|++|+ ..++....+.       +...+..+.+.+   ++.++++++.++.|.+||+...      +.+..+
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~~~~~~  182 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVFN-------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG------SCSHIL  182 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS------CCCEEE
T ss_pred             EEEeCCCeEEEeeCCCCccceecc-------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc------ceeeee
Confidence            9999999999999 4555555553       224567888887   4458999999999999998742      333333


Q ss_pred             cccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCC-C-EEEEeCCC---------CCCcccccCcceEEEcCC
Q psy13998        189 GSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNG-R-VITSFGSE---------GSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~-~-~~~~~~~~---------~~~~~~~~~~~~i~~~~~  256 (319)
                            ..+...+.+++++|++. ++++++.++.|++||... . ....+...         .....+...+.+++++|+
T Consensus       183 ------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          183 ------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             ------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             ------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence                  33556678999999986 688999999999999642 2 22332110         001234556889999999


Q ss_pred             CcEEEEeCCCCEEEEEcC-CCce
Q psy13998        257 GYISVGDSGNNRIQIFTP-DGQF  278 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~~-~g~~  278 (319)
                      ++++++++.++.|++|+. +++.
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCB
T ss_pred             CCEEEEecCCCeEEEEECCCCcc
Confidence            999999999999999995 4444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.86  E-value=1.8e-18  Score=134.10  Aligned_cols=217  Identities=18%  Similarity=0.166  Sum_probs=162.7

Q ss_pred             CCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCc
Q psy13998         56 TWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGT  129 (319)
Q Consensus        56 ~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~  129 (319)
                      ..|.++++++ ++++|+++..++.|.+    ++........    .+..|.+++++++ +.+|+++...++|.+++.+++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~----~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGR----ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEE----EESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEE----EecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            4678999998 5679999999999999    7765433222    2358999999985 679999998999999998775


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC--CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN--NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      ....+.     ......|.++++++ .+.+|+++..  .+.|.++++++..       ...+.     ......|.++++
T Consensus       112 ~~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-------~~~~~-----~~~~~~P~gia~  174 (267)
T 1npe_A          112 QRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-------RRILA-----QDNLGLPNGLTF  174 (267)
T ss_dssp             SCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-------CEEEE-----CTTCSCEEEEEE
T ss_pred             CEEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-------cEEEE-----ECCCCCCcEEEE
Confidence            443332     12236789999999 6789999876  5789988887632       11111     123457999999


Q ss_pred             cCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecc
Q psy13998        207 SNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGC  284 (319)
Q Consensus       207 ~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~  284 (319)
                      +++ +++|+++...+.|.+++.++.....+.      .....|.+++++ .+.+|+++..+++|.+++. +|+.+..+. 
T Consensus       175 d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~-  246 (267)
T 1npe_A          175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------EGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH-  246 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEEEEEEEE------ECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred             cCCCCEEEEEECCCCEEEEEecCCCceEEEe------cCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc-
Confidence            986 589999999999999999876554441      234568899987 5789999999999999997 478887773 


Q ss_pred             cCCCCCCCCCcceEEEccCCc
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~  305 (319)
                          .+....|.+|++.|++.
T Consensus       247 ----~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 ----PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ----CSSCCCCCCEEEECSCC
T ss_pred             ----cccccccceeeecCccC
Confidence                12233699999999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.86  E-value=4e-20  Score=156.99  Aligned_cols=286  Identities=10%  Similarity=0.078  Sum_probs=190.5

Q ss_pred             hccchhhhhhhhhh-cccccccCCCccchhccccceeeeecccCC--CCCc-------CCCCcceEEcC----CCcEEEE
Q psy13998          7 AKNINSCFLLQTLL-VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS--EPGC-------FTWPRGIAVGP----DNSIVVA   72 (319)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~-------~~~~~~v~~~~----~g~~~~~   72 (319)
                      ..|..+++++..+. ...+..++++|+++++...+.+..+..|+.  ..+.       -..|.+++|+|    +|+++++
T Consensus       163 v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v  242 (543)
T 1nir_A          163 LVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA  242 (543)
T ss_dssp             EEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             EEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEE
Confidence            45566666666655 223678889999999887766666665555  3332       24689999999    9986555


Q ss_pred             eC-CCCeEEEeccccccccceeeEEec---------------CceeeEEcCCC-cEEEEcCCCCeEEEEcC-CCcEEE--
Q psy13998         73 DS-SNHRVQVCFPHFDLKTNCVFLAFT---------------WPRGIAVGPDN-SIVVADSSNHRVQVFQS-DGTFVG--  132 (319)
Q Consensus        73 ~~-~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~g-~~~~~~~~~~~i~~~~~-~~~~~~--  132 (319)
                      ++ .+++|.+    ||..+.+.+..+.               .+.++.+++++ .++++...+++|.+||. +.+.+.  
T Consensus       243 ~~~~~~~v~v----~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~  318 (543)
T 1nir_A          243 GAYWPPQFAI----MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT  318 (543)
T ss_dssp             EEEESSEEEE----EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred             EEccCCeEEE----EeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence            54 6899999    8877766555332               35688999976 46777888899999994 333222  


Q ss_pred             EecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE-EcCC-
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNT-  209 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  209 (319)
                      .+.       ....|.+++|+|+|++ |+++..+++|.+||..+.      +++..+... . ..+..  .+.. ++|+ 
T Consensus       319 ~i~-------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg------~l~~~i~~g-~-~ph~g--~g~~~~~p~~  381 (543)
T 1nir_A          319 SIG-------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVDVG-K-TPHPG--RGANFVHPKY  381 (543)
T ss_dssp             EEE-------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEECS-S-SBCCT--TCEEEEETTT
T ss_pred             Eec-------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC------eEEEeeccC-C-CCCCC--CCcccCCCCC
Confidence            331       2246789999999985 556667899999999853      444443211 0 11111  1233 3676 


Q ss_pred             CcEEEEeC-CCCeEEEEeCC--------CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-------CCCEEEEEc
Q psy13998        210 NRVIVSDS-NNHRVQIFDVN--------GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-------GNNRIQIFT  273 (319)
Q Consensus       210 g~~~v~~~-~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-------~~~~i~~~~  273 (319)
                      +.+|++.. .++.|.+|+.+        .+.+.++      ..+...+..++++|+|+.++++.       .+++|.+||
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l------~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL------QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE------ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE------EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence            67888875 67999999964        5677777      44445678899999998777765       257999999


Q ss_pred             C-CCceE-Eee--cccCCCCCCCCCcceEEEccCCc-EEEEe----CCCCeEEeC
Q psy13998        274 P-DGQFL-RAF--GCWGSGDGEFKGLEGVAVMSNGN-ILVCD----RENHRIQVF  319 (319)
Q Consensus       274 ~-~g~~~-~~~--~~~~~~~~~~~~~~~l~~~~~g~-~~v~~----~~~~~i~v~  319 (319)
                      . +++.. ..+  +.+.....+...+..++|+|+|+ ++++.    +.++.|.||
T Consensus       456 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~  510 (543)
T 1nir_A          456 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV  510 (543)
T ss_dssp             TTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred             CCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence            4 45444 332  11101123356799999999998 55553    247888886

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.85  E-value=2e-20  Score=148.84  Aligned_cols=245  Identities=12%  Similarity=0.083  Sum_probs=177.3

Q ss_pred             hhhccchhhhhhhhhh----cccccccCCCccchhccccceeeeecccCCCCCcC------CCCcceEEcCCCcEEEEeC
Q psy13998          5 SEAKNINSCFLLQTLL----VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF------TWPRGIAVGPDNSIVVADS   74 (319)
Q Consensus         5 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~g~~~~~~~   74 (319)
                      .+.+|..+++++..+.    ...|.+++++|++.++++++.+..+..|....++.      ......+++++++++++++
T Consensus        47 V~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~  126 (318)
T 4ggc_A           47 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGS  126 (318)
T ss_dssp             EEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEe
Confidence            4678888888777664    45689999999999999999999988887765532      2233445666788999999


Q ss_pred             CCCeEEEeccccccccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCce
Q psy13998         75 SNHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~  148 (319)
                      .++.+++    |+..+.....     +......+++.++++++++++.++.|++||. +++......  .....+...+.
T Consensus       127 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~v~  200 (318)
T 4ggc_A          127 RSGHIHH----HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL--QTFTQHQGAVK  200 (318)
T ss_dssp             TTSEEEE----EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS--EEECCCCSCEE
T ss_pred             cCCceEe----eecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce--eeecccCCceE
Confidence            9999999    6665433222     3346678899999999999999999999993 333211100  00123345667


Q ss_pred             eEEEeCCC-eEE--EEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEE--eCCCCeEE
Q psy13998        149 YIAVSNTN-RVI--VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS--DSNNHRVQ  223 (319)
Q Consensus       149 ~l~~~~~g-~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~i~  223 (319)
                      .+++.+++ .++  .+++.++.|++|+....      ......       .+...+..+.+.+++..+++  +..++.|+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~------~~~~~~-------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAV-------DAHSQVCSILWSPHYKELISGHGFAQNQLV  267 (318)
T ss_dssp             EEEECTTSTTEEEEEECTTTCEEEEEETTTC------CEEEEE-------ECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             EEEecCCCCcEEEEEecCCCCEEEEEecccc------cccccc-------cceeeeeeeeecccccceEEEEEcCCCEEE
Confidence            88888854 333  35667899999998753      222111       12344567888888765554  34789999


Q ss_pred             EEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        224 IFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       224 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      +||. +++.+..+      .+|...+.+++|+|+|+++++++.|++|++|+.
T Consensus       268 iwd~~~~~~~~~l------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          268 IWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             EEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             EEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            9995 67888888      677788999999999999999999999999994

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=4.8e-19  Score=141.75  Aligned_cols=223  Identities=16%  Similarity=0.178  Sum_probs=154.8

Q ss_pred             EEcCC-CcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCc-EEEEcCCCCeEEEEcC-CCcE-EEE
Q psy13998         62 AVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNS-IVVADSSNHRVQVFQS-DGTF-VGK  133 (319)
Q Consensus        62 ~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~~~~-~~~  133 (319)
                      .|.++ +.+|++++.++.|.+    |+..+.+....+    ..+ +++++|+|+ +|++...++.|.+||. +++. ...
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISF----FSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEE----EETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEE----EeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            34444 457999999999999    888776655432    245 999999997 7777777889999994 5554 444


Q ss_pred             ecCCCccCCCCCCcee-EEEeCCCeEEEEeCCC-C--EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        134 FGSMGNKAGQLEHPHY-IAVSNTNRVIVSDSNN-H--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~~-l~~~~~g~~~~~~~~~-~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      +..       ...+.. ++++|+|+++++...+ +  .|.+||+.+.      +.+..+.       ....|.+++++|+
T Consensus        79 ~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~------~~~~~~~-------~~~~~~~~~~spd  138 (331)
T 3u4y_A           79 IQE-------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN------KFISTIP-------IPYDAVGIAISPN  138 (331)
T ss_dssp             EEE-------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT------EEEEEEE-------CCTTEEEEEECTT
T ss_pred             ccc-------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC------CeEEEEE-------CCCCccceEECCC
Confidence            421       134566 9999999877765554 3  8999998753      3333331       1245789999999


Q ss_pred             Cc-EEEEeCCCCe-EEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCce---EE
Q psy13998        210 NR-VIVSDSNNHR-VQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQF---LR  280 (319)
Q Consensus       210 g~-~~v~~~~~~~-i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~---~~  280 (319)
                      |+ +|+++..++. |.+|+.+  +.........   ......|.+++++|+|+ +|+++..++.|.+|+. +++.   +.
T Consensus       139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~  215 (331)
T 3u4y_A          139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEF---ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN  215 (331)
T ss_dssp             SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE---ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             CCEEEEEecCCCceEEEEEECCCCcEeecCCcc---ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence            95 7777777677 9999854  3332110000   11223578999999997 7888888999999995 5666   55


Q ss_pred             eecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      .+.       ....|.+++++|||+ +|++...++.|.+|
T Consensus       216 ~~~-------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~  248 (331)
T 3u4y_A          216 AVG-------TNNLPGTIVVSRDGSTVYVLTESTVDVFNF  248 (331)
T ss_dssp             EEE-------CSSCCCCEEECTTSSEEEEECSSEEEEEEE
T ss_pred             ecc-------CCCCCceEEECCCCCEEEEEEcCCCEEEEE
Confidence            552       235689999999999 67777777778765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.85  E-value=4.8e-19  Score=145.22  Aligned_cols=245  Identities=15%  Similarity=0.137  Sum_probs=156.1

Q ss_pred             ccccCCCccchhccccceeeeecccCCCCC-------cCCCCcceEEcCCCcEE-EEeCCCC-eEEEeccccccccceee
Q psy13998         24 IGQVGTTPRSQYLQKRRLQFKIGSRGSEPG-------CFTWPRGIAVGPDNSIV-VADSSNH-RVQVCFPHFDLKTNCVF   94 (319)
Q Consensus        24 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~g~~~-~~~~~~~-~v~~~~~~~~~~~~~~~   94 (319)
                      ...+++++++.++........+..++...+       ....+. ++++++++.+ +++...+ .|.+    ++.......
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~----~d~~~~~~~  207 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYV----YMKASGWAP  207 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEE----EEGGGTTCE
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEE----EEcCCCcee
Confidence            345666777776554433222222222211       134566 9999999854 4444333 8888    665433321


Q ss_pred             E--------EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCce-eEEEeC-CCeEEEEeC
Q psy13998         95 L--------AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH-YIAVSN-TNRVIVSDS  163 (319)
Q Consensus        95 ~--------~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~g~~~~~~~  163 (319)
                      .        ....|.+++++| ++.+|++. .+++|++|+.++.....+............|. +++++| ++.+|+++.
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d-~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVD-SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEEC-TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEE-CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            1        335789999999 67888865 47899999965543333311100011112345 999999 689999999


Q ss_pred             CCCEEEEEecCCceeeecCce-eeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CCCeEEEEe-CCCCEEEEeCCCC-
Q psy13998        164 NNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHRVQIFD-VNGRVITSFGSEG-  239 (319)
Q Consensus       164 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~i~~~~-~~~~~~~~~~~~~-  239 (319)
                      .+++|++|+.++......+.. ...+.........+..|.+++++++|++|+++. .+++|++|+ .+|......+... 
T Consensus       287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~  366 (409)
T 3hrp_A          287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV  366 (409)
T ss_dssp             TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence            999999999887532211110 000000001123367899999999999999999 999999999 6665544333211 


Q ss_pred             --C-----CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        240 --S-----EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       240 --~-----~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                        .     ....+..|.+|+++++|++|+++..+++|+.++.
T Consensus       367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence              0     1124678999999999999999999999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.85  E-value=1.3e-18  Score=138.92  Aligned_cols=232  Identities=14%  Similarity=0.112  Sum_probs=166.6

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE---ecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA---FTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFV  131 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~  131 (319)
                      ..|.+++++ ++++|++...++.|.+    +|..+.+....   ...|.++++++++++|++...++.|.+||. +++..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~v----iD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFA----IDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEE----EETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEE----EECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            457888885 5789999988899999    88887766554   358899999888999999877899999994 55666


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      ..+.... ..+....|.++++ .++++|++.. .++.|.++|+.+.      +++..+..       ...|.+++++++|
T Consensus       119 ~~i~~g~-~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~------~~~~~i~~-------g~~p~~i~~~~dG  183 (328)
T 3dsm_A          119 GYIECPD-MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD------KVVDELTI-------GIQPTSLVMDKYN  183 (328)
T ss_dssp             EEEECTT-CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT------EEEEEEEC-------SSCBCCCEECTTS
T ss_pred             EEEEcCC-ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC------eEEEEEEc-------CCCccceEEcCCC
Confidence            5554321 1223347788998 5789999987 4889999998753      33333321       2357889999999


Q ss_pred             cEEEEeCCC----------CeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC-Cc
Q psy13998        211 RVIVSDSNN----------HRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD-GQ  277 (319)
Q Consensus       211 ~~~v~~~~~----------~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~-g~  277 (319)
                      ++|++...+          +.|+++|+. ++....+...     ....|.+++++|+++ +|++..   .|.+||.. ++
T Consensus       184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-----~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~  255 (328)
T 3dsm_A          184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-----LGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADR  255 (328)
T ss_dssp             EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-----TTCCCEEEEECTTSCEEEEESS---SEEEEETTCSS
T ss_pred             CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-----CCCCceeEEEecCCCEEEEEcc---EEEEEECCCCc
Confidence            999998765          789999975 5554454211     123689999999875 566554   89999964 44


Q ss_pred             eEEeecccCCCCCCCCCcceEEEcc-CCcEEEEe----CCCCeEEeC
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMS-NGNILVCD----RENHRIQVF  319 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~v~~----~~~~~i~v~  319 (319)
                      ..... ..   ......|.+++++| ++++|+++    ..++.|.+|
T Consensus       256 ~~~~~-~~---~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~  298 (328)
T 3dsm_A          256 VPVRP-FL---EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY  298 (328)
T ss_dssp             CCSSC-SB---CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred             eeeee-ee---cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence            32111 00   11246799999998 67799999    778888875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=1.8e-18  Score=139.34  Aligned_cols=241  Identities=14%  Similarity=0.208  Sum_probs=154.3

Q ss_pred             ccccccCCCccchhccccce--eeeecccCCC----------CCcCCCCcceEEcCCCc-EEEEeCCCCeEEEecccccc
Q psy13998         22 SGIGQVGTTPRSQYLQKRRL--QFKIGSRGSE----------PGCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~--~~~~~~~~~~----------~~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~   88 (319)
                      .....++++|+++++.....  ...+..|...          ..+...|.+++++|+|+ +++++..++.|.+    |++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v----~~~  115 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV----MKI  115 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE----EEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE----EEe
Confidence            45667889999984433321  2333333221          12346899999999998 5555557899999    777


Q ss_pred             ccceee---EEec-------------CceeeEEcCCCcEEEEcCCCCeEEEEcC--CCcEEEEecCCCccCCCCCCceeE
Q psy13998         89 KTNCVF---LAFT-------------WPRGIAVGPDNSIVVADSSNHRVQVFQS--DGTFVGKFGSMGNKAGQLEHPHYI  150 (319)
Q Consensus        89 ~~~~~~---~~~~-------------~~~~l~~~~~g~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  150 (319)
                      ...+..   ..+.             .+.+++++|+|++|+++..++.|.+|+.  +++........   ......|..+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~g~~p~~~  192 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT---MEAGFGPRHL  192 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE---CCTTCCEEEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE---cCCCCCCceE
Confidence            532222   2221             3667999999998888888899999994  45433221100   1112467889


Q ss_pred             EEeCCCe-EEEEeCCCCEEEEEecCCceeeecCce--eeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEe
Q psy13998        151 AVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTF--VGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFD  226 (319)
Q Consensus       151 ~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~  226 (319)
                      +++|+|+ +|+++..++.+.+|+++..    .+++  +...............+.+++++|+|+ +|++...++.|.+|+
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~  268 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQ----TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA  268 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETT----TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCC----CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence            9999997 6777888899999987631    1111  111111111011124578899999997 567777789999999


Q ss_pred             CC--CC--EEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEE--cC-CCceE
Q psy13998        227 VN--GR--VITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIF--TP-DGQFL  279 (319)
Q Consensus       227 ~~--~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~--~~-~g~~~  279 (319)
                      .+  +.  .+..+      ..+...|.+++|+|+|+ +|+++..++.|.+|  +. +|++.
T Consensus       269 ~~~~g~~~~~~~~------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          269 VTADGHLTLIQQI------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             ECGGGCEEEEEEE------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ECCCCcEEEeEEE------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            64  32  22233      22234688999999997 66777777999999  54 35543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.85  E-value=2e-18  Score=133.93  Aligned_cols=219  Identities=11%  Similarity=0.107  Sum_probs=164.7

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCC-CCeEEEEcCCCc
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSS-NHRVQVFQSDGT  129 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~-~~~i~~~~~~~~  129 (319)
                      ..+++++++|+|+++++  .++.|..    ++. +++.+..+.     .+.++.+.++|+++++... ++++..++++|+
T Consensus        37 ~~~~~~~~~pdG~ilvs--~~~~V~~----~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk  109 (276)
T 3no2_A           37 WECNSVAATKAGEILFS--YSKGAKM----ITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGE  109 (276)
T ss_dssp             CCCCEEEECTTSCEEEE--CBSEEEE----ECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSC
T ss_pred             CCCcCeEECCCCCEEEe--CCCCEEE----ECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCC
Confidence            35889999999999884  4678999    777 455555443     3456788899999999877 789999999999


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      .+..+........+...+..+++.++|+++++...++.|..||.+|       +.+..+...       ..|.++...++
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G-------~~~w~~~~~-------~~~~~~~~~~~  175 (276)
T 3no2_A          110 VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG-------QLLNSVKLS-------GTPFSSAFLDN  175 (276)
T ss_dssp             EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS-------CEEEEEECS-------SCCCEEEECTT
T ss_pred             EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC-------CEEEEEECC-------CCccceeEcCC
Confidence            9888754322122334566788899999999999999999999876       444444321       34667888899


Q ss_pred             CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC----------CCCEEEEEcCCCce
Q psy13998        210 NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS----------GNNRIQIFTPDGQF  278 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~----------~~~~i~~~~~~g~~  278 (319)
                      |++++++..+++|+.+|++ |+.+.++.........+..|.+++..++|++|++++          .+.++..++++|+.
T Consensus       176 g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~  255 (276)
T 3no2_A          176 GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV  255 (276)
T ss_dssp             SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE
T ss_pred             CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE
Confidence            9999999888899999987 999988853322122455688999999999999984          24568888999999


Q ss_pred             EEeecccCCCCCCCCCcceEE
Q psy13998        279 LRAFGCWGSGDGEFKGLEGVA  299 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~  299 (319)
                      +.++..    ...+..+++++
T Consensus       256 ~W~~~~----~~~~~~~~~~~  272 (276)
T 3no2_A          256 VWQLND----KVKFGMISTIC  272 (276)
T ss_dssp             EEEECC----TTTSCCCCEEE
T ss_pred             EEEecC----cccccceeeee
Confidence            988854    34455666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=6.2e-19  Score=142.08  Aligned_cols=235  Identities=13%  Similarity=0.119  Sum_probs=156.6

Q ss_pred             cceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCc-EEEEcCCCCeEEEEcC-CCcEE
Q psy13998         59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNS-IVVADSSNHRVQVFQS-DGTFV  131 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~~~~~  131 (319)
                      .++++++++++|++++.++.|.+    |+..+......+.     .+..++++|+|+ +|++...++.|.+||. +++..
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHV----VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEE----EETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccccCCCEEEEEeCCCCeEEE----EECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence            46788889999999999999999    8887766554332     478999999986 6778778899999994 56666


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------------CCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE  199 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (319)
                      ..+............+.+++++|+|+.+++...            ++.|.+||+.+...   .+.+..+       ....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~-------~~~~  148 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTF-------PMPR  148 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEE-------ECCS
T ss_pred             EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeec-------cCCC
Confidence            555322100000134788999999976665553            38999999874210   0111111       1122


Q ss_pred             CceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc------------------c-----------------
Q psy13998        200 HPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE------------------G-----------------  243 (319)
Q Consensus       200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~------------------~-----------------  243 (319)
                      .+.+++++|+|++|+++   +.|++||. +++....+.......                  .                 
T Consensus       149 ~~~~~~~s~dg~l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  225 (349)
T 1jmx_B          149 QVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  225 (349)
T ss_dssp             SCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             cccceeECCCCcEEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence            46788999999966642   34999996 566655553221000                  0                 


Q ss_pred             ---------------------------cccCcceEEEcC-CCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCC
Q psy13998        244 ---------------------------QLKFPRGVAVDD-QGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKG  294 (319)
Q Consensus       244 ---------------------------~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~  294 (319)
                                                 ....+.+++++| +|+++++.  ++.|.+||. +++.+..+.       ....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------~~~~  296 (349)
T 1jmx_B          226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-------LDHT  296 (349)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-------CSSC
T ss_pred             ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-------CCCC
Confidence                                       001345677889 98766666  789999995 566666652       2235


Q ss_pred             cceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        295 LEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       295 ~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+++++|||+.+++++.++.|++|
T Consensus       297 ~~~~~~s~dg~~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          297 YYCVAFDKKGDKLYLGGTFNDLAVF  321 (349)
T ss_dssp             CCEEEECSSSSCEEEESBSSEEEEE
T ss_pred             ccceEECCCCCEEEEecCCCeEEEE
Confidence            7899999999855556778899887

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.84  E-value=5.3e-20  Score=149.29  Aligned_cols=250  Identities=13%  Similarity=0.066  Sum_probs=170.3

Q ss_pred             hhhhhhhhhh--cccccccCCCcc---chhccccceeeeecccCCCC----------CcCCCCcceEEcCCCcEEEEeCC
Q psy13998         11 NSCFLLQTLL--VSGIGQVGTTPR---SQYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGPDNSIVVADSS   75 (319)
Q Consensus        11 ~~~~~~~~~~--~~~i~~~~~~~~---~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~g~~~~~~~~   75 (319)
                      .+...+..+.  ...|.+++|+|+   +.+++++..+..+..|+...          +|...+.+++|+|+++++++++.
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            3334444443  678999999999   58999988777777665432          34577899999999999999999


Q ss_pred             CCeEEEeccccccccceeeE---EecCceeeEE--cCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCc----------
Q psy13998         76 NHRVQVCFPHFDLKTNCVFL---AFTWPRGIAV--GPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGN----------  139 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~--~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~----------  139 (319)
                      ++.|++    |+..+.....   +...+.++++  +++++++++++.++.|++|| .+++.+..+.....          
T Consensus       107 dg~v~i----wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  182 (368)
T 3mmy_A          107 DKTAKM----WDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM  182 (368)
T ss_dssp             TSEEEE----EETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred             CCcEEE----EEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence            999999    8887666554   2336788999  88999999999999999999 55554443321110          


Q ss_pred             -------------------------cCCCCCCceeEEEeCCC----eEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998        140 -------------------------KAGQLEHPHYIAVSNTN----RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS  190 (319)
Q Consensus       140 -------------------------~~~~~~~~~~l~~~~~g----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  190 (319)
                                               ..........+++.++.    ..+++++.++.|.+|+++.....   .....+..
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~---~~~~~~~~  259 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA---KDNFTFKC  259 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH---HHSEEEEC
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc---ccceeeee
Confidence                                     00011122333443322    23777888888999988753100   11111110


Q ss_pred             cC------CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEe
Q psy13998        191 MG------NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGD  263 (319)
Q Consensus       191 ~~------~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~  263 (319)
                      ..      ....+...+.+++++|+++++++++.++.|++||.. ++.+..+      ..+...+.+++|+|+|.+++++
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS------EQLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC------CCCSSCEEEEEECTTSSCEEEE
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe------cCCCCCceEEEECCCCCeEEEE
Confidence            00      001122257889999999999999999999999964 5666666      4556678999999999999998


Q ss_pred             CCCCEEEEEc
Q psy13998        264 SGNNRIQIFT  273 (319)
Q Consensus       264 ~~~~~i~~~~  273 (319)
                      +.++....|+
T Consensus       334 s~d~~~~~~~  343 (368)
T 3mmy_A          334 SSYDWSKGHE  343 (368)
T ss_dssp             ECCCSTTCGG
T ss_pred             eccccccccc
Confidence            8776444444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.84  E-value=9.1e-18  Score=134.69  Aligned_cols=226  Identities=17%  Similarity=0.214  Sum_probs=165.3

Q ss_pred             cceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEe
Q psy13998         59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKF  134 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~  134 (319)
                      .+.+..+++.++++.  ...|+.    +++.......   .+..|.++++++ ++.+|+++...++|..++.++.....+
T Consensus        37 ~C~~~~~~~~ll~~~--~~~I~~----i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           37 SCKALGPEPVLLFAN--RIDIRQ----VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             CEEESSSCCEEEEEC--BSCEEE----ECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cccccccCceeEeec--ccceEE----EeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            344445544455553  345777    5554332222   345789999996 567999999999999999777544333


Q ss_pred             cCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcE
Q psy13998        135 GSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRV  212 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~  212 (319)
                      .     ......|.++++++ .+++|+++...+.|.+++++|..       ...+.     ......|.+++++| ++.+
T Consensus       111 ~-----~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-------~~~l~-----~~~l~~P~~iavdp~~g~l  173 (349)
T 3v64_C          111 V-----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLL-----WQSLEKPRAIALHPMEGTI  173 (349)
T ss_dssp             E-----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEE-----CTTCSCEEEEEEETTTTEE
T ss_pred             E-----eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-------eEEEE-----eCCCCCcceEEEecCcCeE
Confidence            2     22345789999997 78999999999999999988742       11111     23456799999997 6789


Q ss_pred             EEEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCC
Q psy13998        213 IVSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDG  290 (319)
Q Consensus       213 ~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~  290 (319)
                      |+++... +.|++++++|.....+.     ...+..|.+|++++ ++++|+++...++|..++.+|...+.+.     ..
T Consensus       174 y~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~-----~~  243 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQ  243 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEESC-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CS
T ss_pred             EEeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE-----eC
Confidence            9999887 99999999987665552     23456799999997 4689999999999999998886554442     23


Q ss_pred             CCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        291 EFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       291 ~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ....|.+|+++ ++.+|+++..+++|..
T Consensus       244 ~~~~P~giav~-~~~ly~td~~~~~V~~  270 (349)
T 3v64_C          244 GLPHPFAITVF-EDSLYWTDWHTKSINS  270 (349)
T ss_dssp             SCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CCCCceEEEEE-CCEEEEecCCCCeEEE
Confidence            35689999994 6789999999888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=7.4e-18  Score=135.40  Aligned_cols=262  Identities=17%  Similarity=0.234  Sum_probs=161.6

Q ss_pred             cccccccCCCccchhcccccee-eeecccCCC--CCc---------CCCCcceEEcCCCc-EEEEeCCCCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQ-FKIGSRGSE--PGC---------FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~~--~~~---------~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~   87 (319)
                      ...+..++++|++.++...... ..+..|...  .+.         ...|.+++++|+|+ +++++..++.|.+    |+
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~----~d  112 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV----TR  112 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEE----EE
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEE----EE
Confidence            3467788899999876654432 333332211  111         13789999999998 5566667899999    77


Q ss_pred             cc---cceeeEE---ecCceeeEEcCCCc-EEEEcCCCCeEEEEcC-C-CcEEEEe--cCCCccCCCCCCceeEEEeCCC
Q psy13998         88 LK---TNCVFLA---FTWPRGIAVGPDNS-IVVADSSNHRVQVFQS-D-GTFVGKF--GSMGNKAGQLEHPHYIAVSNTN  156 (319)
Q Consensus        88 ~~---~~~~~~~---~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~-~~~~~~~--~~~~~~~~~~~~~~~l~~~~~g  156 (319)
                      ..   +......   ...+.+++++|+++ +|+++..++.|.+|+. . ++.....  ...   ......|.+++++|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pdg  189 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVFHPNE  189 (343)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEECTTS
T ss_pred             CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cCCCCCcceEEECCCC
Confidence            73   2222222   23678999999997 5555557889999994 3 5443211  000   1122467889999999


Q ss_pred             e-EEEEeCCCCEEEEEecCCceeeecCce--eeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC--CC
Q psy13998        157 R-VIVSDSNNHRVQIFDVNGRVFQSDGTF--VGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN--GR  230 (319)
Q Consensus       157 ~-~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~--~~  230 (319)
                      + +|+++..++.+.+|+++..    .+++  ................+.+++++|+|+ +|++...++.|.+|+.+  +.
T Consensus       190 ~~l~~~~~~~~~i~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~  265 (343)
T 1ri6_A          190 QYAYCVNELNSSVDVWELKDP----HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  265 (343)
T ss_dssp             SEEEEEETTTTEEEEEESSCT----TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             CEEEEEeCCCCEEEEEEecCC----CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence            7 5677778899999998531    1111  111111111112234567899999985 55677788999999965  22


Q ss_pred             ---EEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEc--CCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        231 ---VITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       231 ---~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                         .+..+      ... ..|.+++++|+|+ +|+++..++.|.+|+  .....+..+...   . ....|.+++|.++.
T Consensus       266 ~~~~~~~~------~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~---~-~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          266 VLSKEGFQ------PTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY---A-VGQGPMWVVVNAHE  334 (343)
T ss_dssp             CEEEEEEE------ECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE---E-CSSSCCEEEEEEEC
T ss_pred             ceEEeeee------cCC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc---c-cCCCCeeEEEEccc
Confidence               22222      112 2388999999997 555555789999995  333222222111   1 12468899998764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.83  E-value=1.4e-17  Score=129.11  Aligned_cols=194  Identities=16%  Similarity=0.182  Sum_probs=145.9

Q ss_pred             ecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecC
Q psy13998         97 FTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus        97 ~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~  174 (319)
                      ...|.+++++++ +.+|+++..++.|.+++.++.....+.     ......|.++++++ .+++|+++...++|.+++++
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~  109 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-----RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-----ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence            346789999985 679999999999999997776433332     12346789999998 57999999999999999987


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV  251 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (319)
                      +..       ...+.     ......|.++++++ .+++|+++..  .+.|++++.++.....+.     ......|.++
T Consensus       110 g~~-------~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-----~~~~~~P~gi  172 (267)
T 1npe_A          110 GTQ-------RRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGL  172 (267)
T ss_dssp             SCS-------CEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-----CTTCSCEEEE
T ss_pred             CCC-------EEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE-----ECCCCCCcEE
Confidence            632       11111     11245789999999 5789999876  579999998876544442     1234579999


Q ss_pred             EEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        252 AVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       252 ~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++++ +++|+++...++|.+++.++.....+.      .....|.+|+++ ++.+|+++..+++|.++
T Consensus       173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------~~~~~P~gi~~d-~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------EGLQYPFAVTSY-GKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEE------ECCCSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEecCCCceEEEe------cCCCCceEEEEe-CCEEEEEECCCCeEEEE
Confidence            99997 579999999999999998876554442      234568899987 57899999988888653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.83  E-value=1.4e-18  Score=139.17  Aligned_cols=234  Identities=14%  Similarity=0.128  Sum_probs=159.3

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK  133 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~  133 (319)
                      +.++++++++..++....++.++.    |..   ..+.    ....+.+++++++|++|+++..++.|.+|+.++.....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~   80 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQT----ITA---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR   80 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCE----EEC---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             cceeeecCCccceeEEeecccCcc----ccc---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence            466777777665555456667777    522   2222    23467899999999999998888999999965433333


Q ss_pred             ecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      +.     ......|.+++++++|++|++...+    +.|.+|+.++...      ......    ......+.+++++++
T Consensus        81 ~~-----~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------~~~~~~----~~~~~~~~~i~~d~~  145 (333)
T 2dg1_A           81 PF-----VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL------QDIIED----LSTAYCIDDMVFDSK  145 (333)
T ss_dssp             EE-----ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC------EEEECS----SSSCCCEEEEEECTT
T ss_pred             Ee-----eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE------EEEEcc----CccCCcccceEECCC
Confidence            21     1123568999999999999998766    6899999876421      111110    112346889999999


Q ss_pred             CcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC--CCceEE
Q psy13998        210 NRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP--DGQFLR  280 (319)
Q Consensus       210 g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~--~g~~~~  280 (319)
                      |++|++...      .+.|++++.++.....+      ......+.+++++|+|+ +|+++..++.|.+|+.  +|+.+.
T Consensus       146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~  219 (333)
T 2dg1_A          146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ  219 (333)
T ss_dssp             SCEEEEECCCBTTBCCEEEEEECTTSCCEEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred             CCEEEEeccccccCCCceEEEEeCCCCEEEEe------ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence            999998864      46899999765433333      22344688999999986 8888888899999996  454433


Q ss_pred             eecccC-CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        281 AFGCWG-SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       281 ~~~~~~-~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .+.... ........|.+++++++|++|++...++.|.+|
T Consensus       220 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          220 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF  259 (333)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             cccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            221000 000112468999999999999998877888765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.83  E-value=1.5e-17  Score=135.36  Aligned_cols=225  Identities=17%  Similarity=0.206  Sum_probs=164.3

Q ss_pred             ceEEcCCCcEEEEeCCCCeEEEeccccccccceee---EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEec
Q psy13998         60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFG  135 (319)
Q Consensus        60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~  135 (319)
                      +.+..+.+.++++.  ...|+.    +++......   ..+..|.++++++ ++.+|+++...++|.+++.++.....+.
T Consensus        81 C~~~~~~~~l~~~~--~~~I~~----i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           81 CKALGPEPVLLFAN--RIDIRQ----VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             EEECSSCCEEEEEC--BSCEEE----ECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             ECCccccceeEeec--Ccccee----eccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            44444444444443  356777    666433322   2456789999996 5679999999999999998776544442


Q ss_pred             CCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEE
Q psy13998        136 SMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVI  213 (319)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  213 (319)
                           ......|.++++++ .+++|+++...+.|.++++++..       ...+.     ...+..|.+++++| .+.+|
T Consensus       155 -----~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-------~~~l~-----~~~l~~P~giavdp~~g~ly  217 (386)
T 3v65_B          155 -----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLL-----WQSLEKPRAIALHPMEGTIY  217 (386)
T ss_dssp             -----CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-------CEEEE-----CSSCSCEEEEEEETTTTEEE
T ss_pred             -----eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-------eEEee-----cCCCCCCcEEEEEcCCCeEE
Confidence                 22345789999997 78999999999999999887642       11111     23456799999997 56899


Q ss_pred             EEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCC
Q psy13998        214 VSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE  291 (319)
Q Consensus       214 v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~  291 (319)
                      +++... +.|++++++|.....+.     ...+..|.+|+++++ +++|+++...++|..++.+|...+.+.     ...
T Consensus       218 ~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~  287 (386)
T 3v65_B          218 WTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQG  287 (386)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE-----CSS
T ss_pred             EeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-----ECC
Confidence            999887 89999999886655542     234567999999964 689999999999999998876554442     233


Q ss_pred             CCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        292 FKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       292 ~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ...|.+|+++ ++.+|+++..+++|..
T Consensus       288 ~~~P~giav~-~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          288 LPHPFAITVF-EDSLYWTDWHTKSINS  313 (386)
T ss_dssp             CSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence            5689999994 5689999999888864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.83  E-value=8.7e-18  Score=134.80  Aligned_cols=214  Identities=16%  Similarity=0.174  Sum_probs=161.4

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCC
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      +..|.+|++++ ++.+|+++...+.|..    +++.......    .+..|.++++++ .+++|+++...+.|.+++.+|
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r----~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILR----ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEE----EETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEE----EecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence            46789999996 6779999999999999    7765433222    345789999997 568999999999999999888


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .....+.     ......|.+++++| ++.+|+++... ++|.+++++|..       ...+.     ......|.+|++
T Consensus       148 ~~~~~l~-----~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-------~~~~~-----~~~~~~PnGla~  210 (349)
T 3v64_C          148 AHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-------RRIIA-----DTHLFWPNGLTI  210 (349)
T ss_dssp             CSCEEEE-----CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEESC-----CSSCSCEEEEEE
T ss_pred             CceEEEE-----eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-------cEEEE-----ECCCCCcceEEE
Confidence            7544442     23456789999998 67999999887 999999988632       11111     123567999999


Q ss_pred             cC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        207 SN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       207 ~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      ++ ++++|+++...++|.+++.+|...+.+.     ......|.+|+++ ++.+|+++...++|..++ .+|+.+..+. 
T Consensus       211 d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~-----~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~-  283 (349)
T 3v64_C          211 DYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR-  283 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE-
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCceEEEE-----eCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec-
Confidence            96 6689999999999999999876544442     2235679999995 579999999999999999 6787766662 


Q ss_pred             cCCCCCCCCCcceEEEc
Q psy13998        285 WGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~  301 (319)
                           .....|.+|++.
T Consensus       284 -----~~~~~p~gi~v~  295 (349)
T 3v64_C          284 -----NKLHFPMDIHTL  295 (349)
T ss_dssp             -----CSCSCCCCEEEE
T ss_pred             -----cCCCCCceEEEE
Confidence                 334456666653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.8e-17  Score=130.98  Aligned_cols=227  Identities=19%  Similarity=0.273  Sum_probs=156.5

Q ss_pred             cCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         54 CFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      .+..+.+.+++++|+ +++++..++.|..    |+........  ....+.+++++++|++|++...++.|.+|+.+++.
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~----~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~  118 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLG----WREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA  118 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEE----EETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEE----EeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCE
Confidence            356788999999998 8888988999999    7663221111  22367899999999999998877899999987775


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----------------CCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      ........  ......|.+++++++|++|+++.                 ..+.|..++..+.      ++.. .     
T Consensus       119 ~~~~~~~~--~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g------~~~~-~-----  184 (305)
T 3dr2_A          119 HLLVGRYA--GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS------PLQR-M-----  184 (305)
T ss_dssp             EEEECEET--TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC------CCEE-E-----
T ss_pred             EEEEeccC--CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC------cEEE-E-----
Confidence            43322111  11235678999999999999842                 1356777877432      2111 1     


Q ss_pred             cCCCCCCceeEEEcCCCc-EEEEeCC-----CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC
Q psy13998        194 KAGQLEHPHYIAVSNTNR-VIVSDSN-----NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN  267 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~-~~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~  267 (319)
                       . ....|.+++++|+++ +|+++..     .+.|++|+.++..+.......  ......|.+++++++|++|++.  .+
T Consensus       185 -~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~--~~~~~~pdgi~~d~~G~lwv~~--~~  258 (305)
T 3dr2_A          185 -A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA--SVPDGLPDGFCVDRGGWLWSSS--GT  258 (305)
T ss_dssp             -E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE--CCSSSCCCSEEECTTSCEEECC--SS
T ss_pred             -e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE--ECCCCCCCeEEECCCCCEEEec--CC
Confidence             1 234688999999996 7787775     378999996543221110000  1122457899999999999887  34


Q ss_pred             EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeC
Q psy13998        268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDR  311 (319)
Q Consensus       268 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~  311 (319)
                      .|.+|+++|+.+..+.      ... .+.+++|+++++ +|++..
T Consensus       259 gv~~~~~~g~~~~~~~------~~~-~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          259 GVCVFDSDGQLLGHIP------TPG-TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEEECTTSCEEEEEE------CSS-CCCEEEECTTSCEEEEEET
T ss_pred             cEEEECCCCCEEEEEE------CCC-ceeEEEEeCCCCEEEEEcC
Confidence            6999999999888873      222 589999998886 666664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.82  E-value=1e-17  Score=136.33  Aligned_cols=214  Identities=16%  Similarity=0.175  Sum_probs=162.4

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCC
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      +..|.+|++++ ++.+|+++...+.|..    +++.......    .+..|.++++++ .+++|+++...++|.+++.+|
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r----~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILR----ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEE----EETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEE----EecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence            56789999996 6779999999999999    7765443222    345789999997 568999999999999999887


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .....+.     ......|.+++++| .+.+|+++... +.|.+++++|..       ...+.     ......|.+|++
T Consensus       191 ~~~~~l~-----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-------~~~~~-----~~~~~~PnGlav  253 (386)
T 3v65_B          191 AHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-------RRIIA-----DTHLFWPNGLTI  253 (386)
T ss_dssp             CSCEEEE-----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEEE-----CSSCSCEEEEEE
T ss_pred             CceEEee-----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-------cEEEE-----ECCCCCeeeEEE
Confidence            6544432     23456899999997 67899999887 899999988642       11111     123567999999


Q ss_pred             cC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        207 SN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       207 ~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      ++ ++++|+++...+.|.+++.+|...+.+.     ......|.+|+++ .+.+|+++...++|..++ .+|+.+..+  
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i--  325 (386)
T 3v65_B          254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII--  325 (386)
T ss_dssp             EGGGTEEEEEETTTTEEEEECTTSCSCEEEE-----CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE--
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-----ECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE--
Confidence            96 5689999999999999998876544442     2235679999994 568999999999999999 688777766  


Q ss_pred             cCCCCCCCCCcceEEEc
Q psy13998        285 WGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~  301 (319)
                          ......|.+|++.
T Consensus       326 ----~~~~~~p~gi~v~  338 (386)
T 3v65_B          326 ----RNKLHFPMDIHTL  338 (386)
T ss_dssp             ----ECSCSCCCCEEEE
T ss_pred             ----ccCCCCCceEEEE
Confidence                2344567777664

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.82  E-value=6.3e-19  Score=144.38  Aligned_cols=238  Identities=6%  Similarity=-0.010  Sum_probs=150.3

Q ss_pred             cccCCCccchhccccceeeeecccC-------------CCCCcCCCCcceEEcC--------CCcEEEEeCCCCeEEEec
Q psy13998         25 GQVGTTPRSQYLQKRRLQFKIGSRG-------------SEPGCFTWPRGIAVGP--------DNSIVVADSSNHRVQVCF   83 (319)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~--------~g~~~~~~~~~~~v~~~~   83 (319)
                      ....+++++.++++++.+.++.+|+             ...||...|.+|+|+|        +|+++++++.|++|++  
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~--  170 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII--  170 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE--
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE--
Confidence            3344667777888887777666663             3467889999999987        7899999999999999  


Q ss_pred             cccccccceeeE----EecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCC-------------------C
Q psy13998         84 PHFDLKTNCVFL----AFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSM-------------------G  138 (319)
Q Consensus        84 ~~~~~~~~~~~~----~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-------------------~  138 (319)
                        ||+.+.+...    +...+.+++|+|++ +++++++.++.|++|| ..++........                   .
T Consensus       171 --Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          171 --WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             --EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             --EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence              9887665443    23467899999987 5888999999999999 444332221100                   0


Q ss_pred             ccCCCCCCceeEEEe-CCCeEEEEeCCCCEEEEEecCCceeeec-----Ccee-eeecccCCcCCCCCCceeEEEcC--C
Q psy13998        139 NKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSD-----GTFV-GKFGSMGNKAGQLEHPHYIAVSN--T  209 (319)
Q Consensus       139 ~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~  209 (319)
                      ...++...+..+.+. ++++.+++++.++.+++||+........     +... ..+..............+..+.+  +
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM  328 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence            112344566788887 6899999999999999999864321000     0000 00000000001111222334443  3


Q ss_pred             CcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        210 NRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      +.++++++.++.|++||. .++.....      ..+...+.+++|+|+|+++++++.+ .+.+|.
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~------~~~~~~V~svafspdG~~LA~as~~-Gv~lvr  386 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSIP------IQLGMPIVDFCWHQDGSHLAIATEG-SVLLTR  386 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEEE------EECSSCEEEEEECTTSSEEEEEESS-EEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEe------cCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEE
Confidence            456677888999999996 45554444      3344568999999999999998765 465555

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=3.4e-17  Score=131.20  Aligned_cols=223  Identities=13%  Similarity=0.146  Sum_probs=150.8

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeEEec------CceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCc
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAFT------WPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGN  139 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~  139 (319)
                      +++++++.++.|.+    |+..+.+....+.      .|.+++++|+|+ +|++...++.|.+|| .+++.+..+.....
T Consensus         2 ~~~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVV----IDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEE----EETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcCCCCeEEE----EECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            47888889999999    8887766655332      488999999985 678888889999999 56777666542210


Q ss_pred             cCCCCCCceeEEEeCCCeEEEEeC------------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        140 KAGQLEHPHYIAVSNTNRVIVSDS------------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       140 ~~~~~~~~~~l~~~~~g~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                       ..+...+.+++++|+|+.+++..            .++.|.+||+.+.      +.+..+..       ...+.+++++
T Consensus        78 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-------~~~~~~~~~s  143 (337)
T 1pby_B           78 -EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL------SRRKAFEA-------PRQITMLAWA  143 (337)
T ss_dssp             -TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT------EEEEEEEC-------CSSCCCEEEC
T ss_pred             -ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC------cEEEEEeC-------CCCcceeEEC
Confidence             00112578899999996555443            4689999998753      33333321       1346789999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC--CC-----c-------------------------------------
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEG--SE-----E-------------------------------------  242 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~--~~-----~-------------------------------------  242 (319)
                      |+|+.+++.  ++.|++||.. ++....+....  ..     .                                     
T Consensus       144 ~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          144 RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence            999744444  5789999964 44444432211  00     0                                     


Q ss_pred             ----------------ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        243 ----------------GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       243 ----------------~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                                      .+...+.+++++|+|+++++.  ++.|.+||. +++.+..+.       ....+.+++++|||+
T Consensus       222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~  292 (337)
T 1pby_B          222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-------LPHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-------CSSCCCEEEECTTSC
T ss_pred             EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-------CCCceeeEEECCCCC
Confidence                            000134568999999766665  689999995 466666652       224689999999999


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      ++++++.++.|++|
T Consensus       293 ~l~~~~~~~~i~v~  306 (337)
T 1pby_B          293 TVWLGGALGDLAAY  306 (337)
T ss_dssp             EEEEESBSSEEEEE
T ss_pred             EEEEEcCCCcEEEE
Confidence            66666778999886

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.82  E-value=4e-17  Score=128.98  Aligned_cols=230  Identities=16%  Similarity=0.129  Sum_probs=159.2

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee--EEecCceeeEEcCCCcEEEEcCCC--CeEEEEc-CCCcE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF--LAFTWPRGIAVGPDNSIVVADSSN--HRVQVFQ-SDGTF  130 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~~~~~--~~i~~~~-~~~~~  130 (319)
                      ..|.+++++++|++|+++..+++|..    ++.......  .....|.+++++++|++|+++...  ..|..++ .+++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~----~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVS----ITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEE----ECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEE----ECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            57899999999999999988999999    766432211  112368999999999999988543  3588887 56665


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc---eeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR---VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      .......     ....+.+++..+++.+|+++...+.|+++|..+.   .....+..     ...........|+++  +
T Consensus       108 ~~~~~~~-----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~-----~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A          108 ETLLTLP-----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-----ARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEEEECT-----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG-----SCSSTTCCSCSEEEE--E
T ss_pred             EEEEeCC-----CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcc-----ccccccCCCCcCCCc--C
Confidence            4333221     1244577777777888999888899999998642   11001100     000112334578888  6


Q ss_pred             CCC-cEEEEeCCCCeEEEEeCCC--CE--EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEee
Q psy13998        208 NTN-RVIVSDSNNHRVQIFDVNG--RV--ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF  282 (319)
Q Consensus       208 ~~g-~~~v~~~~~~~i~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~  282 (319)
                      +++ .+|+++...++|++|+.++  ..  ...+       .....|.+|+++++|++|++....++|.+|+++|+.....
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-------~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~  248 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-------VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIA  248 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-------EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEE
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-------eccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEe
Confidence            665 6999999999999999753  21  1111       1224689999999999999999999999999988774321


Q ss_pred             cccCCCCCCCCCcceEEEc---cCC-cEEEEeCC
Q psy13998        283 GCWGSGDGEFKGLEGVAVM---SNG-NILVCDRE  312 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~---~~g-~~~v~~~~  312 (319)
                      ..    ......|++++|.   +|+ .+|++...
T Consensus       249 ~~----~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          249 QA----EQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CG----GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ec----ccccCCceEEEEecccCCCCEEEEECCC
Confidence            11    2234679999998   785 48888765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.82  E-value=2.6e-17  Score=130.35  Aligned_cols=203  Identities=20%  Similarity=0.176  Sum_probs=151.8

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc----ce--eeE--EecCceeeEEcC-CCcEEEEcCCCCeEEEE
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT----NC--VFL--AFTWPRGIAVGP-DNSIVVADSSNHRVQVF  124 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~----~~--~~~--~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~  124 (319)
                      +..|.++++++ ++++|+++..++.|..    ++...    ..  .+.  .+..|.++++++ .+++|+++...++|.++
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~----~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEE----EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEE----EECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence            57899999997 5679999999999999    76653    11  111  245789999996 56899999999999999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      +.+|+....+.     ......|.+++++| .+.+|+++... +.|.+++++|..       ...+.     ......|.
T Consensus       105 ~~~g~~~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-------~~~~~-----~~~~~~P~  167 (316)
T 1ijq_A          105 DTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLV-----TENIQWPN  167 (316)
T ss_dssp             ETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEE-----CSSCSCEE
T ss_pred             eCCCCceEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-------eEEEE-----ECCCCCce
Confidence            98887555442     12346889999998 67899998765 789999887642       22111     12356799


Q ss_pred             eEEEcCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEE
Q psy13998        203 YIAVSNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLR  280 (319)
Q Consensus       203 ~~~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~  280 (319)
                      +|+++++ +++|+++...++|.+++.+|...+.+...   ...+..|.+|+++. +++|+++...++|..+++ +|+.+.
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~---~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec---CCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceE
Confidence            9999974 68999999999999999987655444211   12356799999974 799999999999999995 677655


Q ss_pred             ee
Q psy13998        281 AF  282 (319)
Q Consensus       281 ~~  282 (319)
                      .+
T Consensus       244 ~i  245 (316)
T 1ijq_A          244 LL  245 (316)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.82  E-value=1.2e-17  Score=133.23  Aligned_cols=211  Identities=14%  Similarity=0.101  Sum_probs=153.0

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---------CceeeEEcCCCcEEEEcC-CCCeEEEE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------WPRGIAVGPDNSIVVADS-SNHRVQVF  124 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~g~~~~~~~-~~~~i~~~  124 (319)
                      ...|.+|+++++|++|++...++.|.+    +|..+......+.         .|.++++ .++++|+++. .++.|.++
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~----iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~vi  157 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFI----INPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKI  157 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEE----EETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEE
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEE----EECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEE
Confidence            467999999889999999877899999    8887766554332         6788998 5678999986 48899999


Q ss_pred             c-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----------CEEEEEecCCceeeecCceeeeecccCC
Q psy13998        125 Q-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----------HRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      | .+++.+..+..       ...|.+++++++|++|++...+          +.|.++|..+.      ++...+..   
T Consensus       158 D~~t~~~~~~i~~-------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~------~v~~~~~~---  221 (328)
T 3dsm_A          158 DTETDKVVDELTI-------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF------TVEKQFKF---  221 (328)
T ss_dssp             ETTTTEEEEEEEC-------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT------EEEEEEEC---
T ss_pred             ECCCCeEEEEEEc-------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC------eEEEEEec---
Confidence            9 55676666632       1357889999999999998765          78999998743      33333321   


Q ss_pred             cCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEe----CCCC
Q psy13998        194 KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGD----SGNN  267 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~----~~~~  267 (319)
                        .....|.+++++|+++ +|++..   .|++||.....+....   ........|.+++++| ++++|+++    ..++
T Consensus       222 --~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~---~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~  293 (328)
T 3dsm_A          222 --KLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRP---FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG  293 (328)
T ss_dssp             --CTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSC---SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred             --CCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeee---eecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence              1113689999999775 555543   8999997543221110   0011145799999998 67899999    7889


Q ss_pred             EEEEEcCCCceEEeecccCCCCCCCCCcceEEEc
Q psy13998        268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       268 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  301 (319)
                      +|.+|+.+|+.+..+.       ....|.++++-
T Consensus       294 ~V~v~d~~g~~~~~i~-------~G~~P~~~~~~  320 (328)
T 3dsm_A          294 IVYRYSPQGKLIDEFY-------VGIIPGAFCWK  320 (328)
T ss_dssp             EEEEECTTCCEEEEEE-------EEESEEEEEEE
T ss_pred             EEEEECCCCCEEEEEE-------eccCcceEEEe
Confidence            9999998899988873       23457777663

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.82  E-value=1.2e-17  Score=131.49  Aligned_cols=193  Identities=19%  Similarity=0.285  Sum_probs=141.9

Q ss_pred             ecCceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998         97 FTWPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus        97 ~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      +..+.+++++++|+ +|+++..++.|.+|+.++. ...+.      .....|.+++++++|++|++...++.|.+|+...
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            45678999999997 8888888899999997766 55553      2335689999999999999998889999999843


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------------CCCeEEEEeCCCCEEEEeCCC
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVNGRVITSFGSE  238 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~  238 (319)
                      .      ++.......  .......|.+++++++|++|+++.                 ..+.|+.++.+++....    
T Consensus       100 g------~~~~~~~~~--~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~----  167 (296)
T 3e5z_A          100 G------EWESIADSF--EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP----  167 (296)
T ss_dssp             C------CEEEEECEE--TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE----
T ss_pred             C------cEEEEeecc--CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe----
Confidence            2      221111100  011234578899999999999853                 24589999987654433    


Q ss_pred             CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC--CCce---EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP--DGQF---LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       239 ~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~g~~---~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                         ......|.+++++|+|++++++..++.|++|+.  +|+.   ...+ .     .....|.+|+++++|++|++.  +
T Consensus       168 ---~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-----~~~~~p~~i~~d~~G~l~v~~--~  236 (296)
T 3e5z_A          168 ---IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-----VEPGKTDGLRVDAGGLIWASA--G  236 (296)
T ss_dssp             ---ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-----CSSSCCCSEEEBTTSCEEEEE--T
T ss_pred             ---ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-----CCCCCCCeEEECCCCCEEEEc--C
Confidence               234557899999999987799999999999995  4554   2333 1     234568999999999999988  6


Q ss_pred             CeEEeC
Q psy13998        314 HRIQVF  319 (319)
Q Consensus       314 ~~i~v~  319 (319)
                      +.|.+|
T Consensus       237 ~~v~~~  242 (296)
T 3e5z_A          237 DGVHVL  242 (296)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            667665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.81  E-value=1.2e-17  Score=137.58  Aligned_cols=215  Identities=13%  Similarity=0.078  Sum_probs=148.6

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCC---eEEEeccccccccceeeEEe---cCceeeEEcCCCcEEE-EcCCC--CeEEEE
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNH---RVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVV-ADSSN--HRVQVF  124 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~-~~~~~--~~i~~~  124 (319)
                      |...+.+++|+|+|+.++..+.++   .|++    |++.+.....-.   ..+.+++|+|+|+.++ +...+  ..|++|
T Consensus       177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~----~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~  252 (415)
T 2hqs_A          177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVI----QTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  252 (415)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEE----EETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCCcceeeEEcCCCCEEEEEEecCCCcEEEE----EECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence            346788999999999888776654   9999    888765543321   2467899999998544 65544  459999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-CC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      |..+.....+      ..+...+..++|+|+|+.++..+. ++  .|.+|++.+.      +. ..+      ..+....
T Consensus       253 d~~~~~~~~l------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~------~~-~~l------~~~~~~~  313 (415)
T 2hqs_A          253 DLASGQIRQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------AP-QRI------TWEGSQN  313 (415)
T ss_dssp             ETTTCCEEEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------CC-EEC------CCSSSEE
T ss_pred             ECCCCCEEeC------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC------CE-EEE------ecCCCcc
Confidence            9544333444      223356788999999986665443 34  7888888753      21 111      1122345


Q ss_pred             eeEEEcCCCcEEEEeCC---CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC---EEEEEcCC
Q psy13998        202 HYIAVSNTNRVIVSDSN---NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN---RIQIFTPD  275 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~---~i~~~~~~  275 (319)
                      ..++++|+|++++....   ...|++||.++.....+      ..+. .+.+++|+|+|++++.++.++   .|++|+.+
T Consensus       314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l------~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC------CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe------cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            67899999987665543   35899999765444444      2222 678899999998776666555   89999988


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                      |+..+.+      ..+...+.+++|+|.-
T Consensus       387 g~~~~~l------~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          387 GRFKARL------PATDGQVKFPAWSPYL  409 (415)
T ss_dssp             SCCEEEC------CCSSSEEEEEEECCCC
T ss_pred             CCcEEEe------eCCCCCCcCCcccccc
Confidence            8888877      5677789999999864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=3.6e-17  Score=132.67  Aligned_cols=247  Identities=12%  Similarity=0.120  Sum_probs=152.0

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc-cceeeE--Ee---cCceeeEEcCCCcE-E-EEcC----------
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK-TNCVFL--AF---TWPRGIAVGPDNSI-V-VADS----------  116 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~-~~~~~~--~~---~~~~~l~~~~~g~~-~-~~~~----------  116 (319)
                      ...|..++++|+|+++++.+.+ .|.+    |+.. ++....  ..   ..|..++++|+|+. + ++..          
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~----~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSS----FAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEE----EEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEE----EEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            3578999999999966665555 8999    7775 443322  11   24677999999983 3 3432          


Q ss_pred             ---CCCeEEEEcC--CCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecC-CceeeecCceeeeec
Q psy13998        117 ---SNHRVQVFQS--DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN-GRVFQSDGTFVGKFG  189 (319)
Q Consensus       117 ---~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~  189 (319)
                         .++.+.+|+.  +|+....+....  ..+...+.+++++|+|+ +|+++..++.|.+|+++ +..+.    .+....
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~----~~~~~~  187 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYE--YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE----LVGSVD  187 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE----EEEEEE
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEE--eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE----EeeeEe
Confidence               5788999984  566544332110  01235689999999996 55566667899999986 22111    111111


Q ss_pred             ccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC---CCCEEE---EeCCCCCC-ccccc------CcceEE-Ec
Q psy13998        190 SMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV---NGRVIT---SFGSEGSE-EGQLK------FPRGVA-VD  254 (319)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~---~~~~~~---~~~~~~~~-~~~~~------~~~~i~-~~  254 (319)
                      .    ..+...|.+++++|+|+ +|++...++.|.+|+.   +|+...   .+...... .++..      .+.+++ ++
T Consensus       188 ~----~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s  263 (365)
T 1jof_A          188 A----PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT  263 (365)
T ss_dssp             C----SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred             c----CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC
Confidence            0    11235689999999996 4566666789999864   355432   22111100 11111      478899 99


Q ss_pred             CCCc-EEEEeCCCC-----EEEEEcC--CCceEEeecccCCCCCCCCCcceEEEcc---CCcEEEEe-CCCCeEEeC
Q psy13998        255 DQGY-ISVGDSGNN-----RIQIFTP--DGQFLRAFGCWGSGDGEFKGLEGVAVMS---NGNILVCD-RENHRIQVF  319 (319)
Q Consensus       255 ~~g~-~~v~~~~~~-----~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~---~g~~~v~~-~~~~~i~v~  319 (319)
                      |||+ +|+++...+     .|.+|+.  +|+........   ..+...+.+++++|   ||++++++ ..++.|++|
T Consensus       264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~---~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS---PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE---ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee---ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            9997 455554444     8999984  46644321000   12334688899999   78855544 456889886

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.81  E-value=1.1e-16  Score=126.72  Aligned_cols=212  Identities=18%  Similarity=0.138  Sum_probs=155.0

Q ss_pred             CeEEEeccccccccceee---EEecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCC----cEEEEecCCCccCCCCCCce
Q psy13998         77 HRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDG----TFVGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~  148 (319)
                      ..|+.    +++.+....   ..+..|.++++++. +.+|+++..+++|..++.++    .....+.     ......|.
T Consensus        10 ~~I~~----i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-----~~~~~~p~   80 (316)
T 1ijq_A           10 HEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDIQAPD   80 (316)
T ss_dssp             SSEEE----EETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSSCSCCC
T ss_pred             CeEEE----EECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-----eCCCCCcC
Confidence            46777    666544322   24567899999975 57999999999999999766    2222221     22346789


Q ss_pred             eEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCC-CeEEEE
Q psy13998        149 YIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIF  225 (319)
Q Consensus       149 ~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~-~~i~~~  225 (319)
                      ++++++ ++++|+++...+.|.++++++..       ...+.     ......|.+++++| .+.+|+++... +.|+++
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~  148 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSS-------EEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCc-------eEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence            999996 77999999999999999988642       11111     12346799999997 67899998765 899999


Q ss_pred             eCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        226 DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                      +++|.....+.     ...+..|.+|+++++ +++|+++...++|..++.+|...+.+...   ......|.+|+++ ++
T Consensus       149 ~~dG~~~~~~~-----~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~---~~~~~~P~giav~-~~  219 (316)
T 1ijq_A          149 GLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVF-ED  219 (316)
T ss_dssp             ETTSCCEEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEE-TT
T ss_pred             cCCCCCeEEEE-----ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec---CCccCCcEEEEEE-CC
Confidence            99987766552     234568999999976 68999999999999999888655554321   1345679999997 47


Q ss_pred             cEEEEeCCCCeEEe
Q psy13998        305 NILVCDRENHRIQV  318 (319)
Q Consensus       305 ~~~v~~~~~~~i~v  318 (319)
                      .+|+++..+++|..
T Consensus       220 ~ly~~d~~~~~V~~  233 (316)
T 1ijq_A          220 KVFWTDIINEAIFS  233 (316)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCeEEE
Confidence            89999998888865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.80  E-value=3.7e-17  Score=129.11  Aligned_cols=201  Identities=14%  Similarity=0.173  Sum_probs=153.2

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccce---ee--EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNC---VF--LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~  127 (319)
                      +..+.+|++++ ++++|+++...+.|..    ++.....   .+  ..+..|.++++++ .+++|+++...++|.+++.+
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r----~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d  109 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKR----TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  109 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEE----EETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEE----EEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence            35678899987 5789999999999999    6664332   11  1346899999996 57899999999999999988


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      |.....+.     ......|.+++++| .|.+|+++.. .+.|.+++++|..       ...+.     ......|++|+
T Consensus       110 G~~~~~l~-----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-------~~~~~-----~~~l~~Pngla  172 (318)
T 3sov_A          110 GSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-------RFIII-----NSEIYWPNGLT  172 (318)
T ss_dssp             SCSCEEEE-----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-------CEEEE-----CSSCSCEEEEE
T ss_pred             CCcEEEEE-----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-------eEEEE-----ECCCCCccEEE
Confidence            86544442     23457899999998 6899999864 6899999988632       11111     12356799999


Q ss_pred             EcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998        206 VSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       206 ~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~  282 (319)
                      +++ ++++|+++...+.|.+++.+|...+.+.     ......|.+++++. +.+|+++...++|..+++ +|+....+
T Consensus       173 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          173 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EeccCCEEEEEECCCCEEEEEcCCCCceEEEe-----cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            997 5689999999999999999876555542     23456799999974 589999999999999996 67765555

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.80  E-value=1e-16  Score=131.97  Aligned_cols=218  Identities=17%  Similarity=0.222  Sum_probs=149.7

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCC----CeEEEeccccccccceeeEEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC-
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSN----HRVQVCFPHFDLKTNCVFLAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD-  127 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~-  127 (319)
                      .+..|.+|+++++|++|+++..+    ..+....+.-..........+..|.++++++ +|.+|+++..+++|++++.+ 
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~  259 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT  259 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence            45789999999999999998643    1233311110010012333567899999999 78999999999999999975 


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCc--eeeecCceeeeecccC-----CcCCCCC
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--VFQSDGTFVGKFGSMG-----NKAGQLE  199 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~  199 (319)
                      +.....+...    +....+..++++++|+ +|+++...+.|.+++.++.  .+.....+.......+     .....+.
T Consensus       260 g~~~~~~~~~----~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~  335 (433)
T 4hw6_A          260 GTLTEEEVMM----DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW  335 (433)
T ss_dssp             CCEEEEEEEC----SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred             CeEEEEEecc----CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence            6653333211    1123346799999986 9999999999999887631  1100000111111111     1123567


Q ss_pred             CceeEEE---------cCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCC-----C------CcccccCcceEEEc-CCCc
Q psy13998        200 HPHYIAV---------SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG-----S------EEGQLKFPRGVAVD-DQGY  258 (319)
Q Consensus       200 ~~~~~~~---------~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~i~~~-~~g~  258 (319)
                      .|.++++         +++|++|+++..+++|++++++|......+...     .      ....+..|.+|+++ ++|+
T Consensus       336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  415 (433)
T 4hw6_A          336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC  415 (433)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence            8999999         888999999999999999999886655554311     1      12357789999999 7899


Q ss_pred             EEEEeCCCCEEEEEcCC
Q psy13998        259 ISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~~~  275 (319)
                      +||++..+++|+.++++
T Consensus       416 lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          416 FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEecC
Confidence            99999999999999854

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.79  E-value=1.3e-17  Score=147.69  Aligned_cols=273  Identities=10%  Similarity=0.021  Sum_probs=168.7

Q ss_pred             cccccccCCCccchhccccce-ee-----eecccCCCCCcC--------------------------------CCCcceE
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRL-QF-----KIGSRGSEPGCF--------------------------------TWPRGIA   62 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~~~~~--------------------------------~~~~~v~   62 (319)
                      ...+..++|||++++++..+. +.     .+..|+...+..                                ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            345788999999998887655 43     455554433321                                1268999


Q ss_pred             EcCCCcEEEEeCCCCeEEEeccccccccc---eeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecC
Q psy13998         63 VGPDNSIVVADSSNHRVQVCFPHFDLKTN---CVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGS  136 (319)
Q Consensus        63 ~~~~g~~~~~~~~~~~v~~~~~~~~~~~~---~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  136 (319)
                      |+|||+.++..+. +.|++    |+..+.   ....   +...+..++|+|||+.++..+ ++.|++|+..+.....+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~----~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYL----YDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEE----EESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred             ECCCCCEEEEEeC-CcEEE----EECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence            9999998777665 89999    887655   2221   123568899999998666654 4589999965544443322


Q ss_pred             CCccC---C--------CCCCceeEEEeCCCeEEEEeCCCC---------------------------------EEEEEe
Q psy13998        137 MGNKA---G--------QLEHPHYIAVSNTNRVIVSDSNNH---------------------------------RVQIFD  172 (319)
Q Consensus       137 ~~~~~---~--------~~~~~~~l~~~~~g~~~~~~~~~~---------------------------------~i~~~~  172 (319)
                      .+...   +        ....+.+++|+|||+.++..+.++                                 .|.+||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            11000   0        011257899999998666554332                                 677777


Q ss_pred             cCC-ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----CCCeEEEEeCC-CCEEEEeCCCCCCcccc
Q psy13998        173 VNG-RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----NNHRVQIFDVN-GRVITSFGSEGSEEGQL  245 (319)
Q Consensus       173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----~~~~i~~~~~~-~~~~~~~~~~~~~~~~~  245 (319)
                      +.+ .      +.......    ..+...+..+++ |+|+.++...     .+..|++||.. ++....+....  ....
T Consensus       270 ~~~~~------~~~~~~~~----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~  336 (741)
T 2ecf_A          270 PAEQA------QTQWIDLG----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWV  336 (741)
T ss_dssp             SSTTC------CCEEECCC----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCC
T ss_pred             CCCCC------ceEEecCC----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcC
Confidence            664 3      21111100    123345678999 9998666432     25679999964 44443331110  0111


Q ss_pred             cCcceEEEcCCCcEEEEeCCCC--EEEEEcCCCceEEeecccCCCCCCCCCcceE-EEccCCc-EEEEeCCCC--eEEeC
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNN--RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGV-AVMSNGN-ILVCDRENH--RIQVF  319 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~-~~v~~~~~~--~i~v~  319 (319)
                      .....++|+|||++++++..++  .|+.++.+++ ...+      ..+...+..+ +|+|||+ +++++..++  .+++|
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l------~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~  409 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL------THGNWSVDELLAVDEKAGLAYFRAGIESARESQIY  409 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES------CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee------eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence            1345789999999888888777  4555566676 6655      3444556676 5999997 556666655  67665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.79  E-value=5.5e-17  Score=133.68  Aligned_cols=206  Identities=13%  Similarity=0.075  Sum_probs=134.3

Q ss_pred             CeEEEeccccccccceee--E-EecCceeeEEcCCCcEEEEcCCC---CeEEEEcC-CCcEEEEecCCCccCCCCCCcee
Q psy13998         77 HRVQVCFPHFDLKTNCVF--L-AFTWPRGIAVGPDNSIVVADSSN---HRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHY  149 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~g~~~~~~~~~---~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  149 (319)
                      +.|++    |+.......  . +...+.+++|+|+|+.++..+.+   ..|++||. +++.. .+.      .+...+.+
T Consensus       159 ~~i~i----~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~------~~~~~~~~  227 (415)
T 2hqs_A          159 YELRV----SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA------SFPRHNGA  227 (415)
T ss_dssp             EEEEE----EETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE------CCSSCEEE
T ss_pred             ceEEE----EcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee------cCCCcccC
Confidence            69999    777533221  1 33467889999999877666555   49999994 55554 331      22346789


Q ss_pred             EEEeCCCeEEE-EeCCC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-CC--eEE
Q psy13998        150 IAVSNTNRVIV-SDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NH--RVQ  223 (319)
Q Consensus       150 l~~~~~g~~~~-~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~--~i~  223 (319)
                      ++|+|+|+.++ +.+.+  ..|++||+.+.      +. ..+      ..+......++++|+|+.++..+. ++  .|+
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~------~~-~~l------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLASG------QI-RQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTC------CE-EEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECCCC------CE-EeC------cCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence            99999997555 66544  45999998753      22 122      223345678999999986554443 33  788


Q ss_pred             EEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC---CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEE
Q psy13998        224 IFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG---NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV  300 (319)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  300 (319)
                      +||.++.....+      ..+...+..++|+|+|++++..+.   +..|++|+.++.....+      ..+. .+.+++|
T Consensus       295 ~~d~~~~~~~~l------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l------~~~~-~~~~~~~  361 (415)
T 2hqs_A          295 KVNINGGAPQRI------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------SSTF-LDETPSL  361 (415)
T ss_dssp             EEETTSSCCEEC------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC------CCSS-SCEEEEE
T ss_pred             EEECCCCCEEEE------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe------cCCC-CcCCeEE
Confidence            889765444444      222234678999999986665553   35899999655444444      2232 7889999


Q ss_pred             ccCCcEEEEeCCCC---eEEeC
Q psy13998        301 MSNGNILVCDRENH---RIQVF  319 (319)
Q Consensus       301 ~~~g~~~v~~~~~~---~i~v~  319 (319)
                      +|||++++.++.++   .|.+|
T Consensus       362 spdg~~l~~~s~~~~~~~l~~~  383 (415)
T 2hqs_A          362 APNGTMVIYSSSQGMGSVLNLV  383 (415)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEE
T ss_pred             cCCCCEEEEEEcCCCccEEEEE
Confidence            99999666655544   55554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=3.6e-16  Score=126.64  Aligned_cols=230  Identities=13%  Similarity=0.286  Sum_probs=137.7

Q ss_pred             CCCeEEEecccccc--ccceeeE----EecCceeeEEcCCCcEEEEcCC----CCeEEEEc--CC-CcEEEEecCCCccC
Q psy13998         75 SNHRVQVCFPHFDL--KTNCVFL----AFTWPRGIAVGPDNSIVVADSS----NHRVQVFQ--SD-GTFVGKFGSMGNKA  141 (319)
Q Consensus        75 ~~~~v~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~----~~~i~~~~--~~-~~~~~~~~~~~~~~  141 (319)
                      .++.|.+    |..  .++....    +...|..++++|+|+.+++...    ++.|.+|+  .+ |+. ..+...   .
T Consensus        25 ~~~~i~~----~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~~~~---~   96 (361)
T 3scy_A           25 NSKGIYT----FRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLLNTQ---K   96 (361)
T ss_dssp             SCCEEEE----EEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEEEEE---E
T ss_pred             CCCCEEE----EEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEeeEe---c
Confidence            4567888    544  2222111    4557889999999985444443    37898887  33 433 222111   1


Q ss_pred             CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce-eeecCceeeeecccC--CcCCCCCCceeEEEcCCCc-EEEEeC
Q psy13998        142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV-FQSDGTFVGKFGSMG--NKAGQLEHPHYIAVSNTNR-VIVSDS  217 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~-~~v~~~  217 (319)
                      .+...|..+++ ....+|++...++.+.+|++.... +....... .....+  .......++.+++++|+|+ +|+++.
T Consensus        97 ~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  174 (361)
T 3scy_A           97 TMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVI-EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL  174 (361)
T ss_dssp             CSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE-ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE-EccCCCCCccccCCCcceEEEECCCCCEEEEEeC
Confidence            12346788888 333567777788999999986321 10000000 010000  0112234578899999997 778888


Q ss_pred             CCCeEEEEeCC--C-----C-EE-----EEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCceEEeec
Q psy13998        218 NNHRVQIFDVN--G-----R-VI-----TSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQFLRAFG  283 (319)
Q Consensus       218 ~~~~i~~~~~~--~-----~-~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~~~~~~~  283 (319)
                      .++.|.+|+.+  +     + ..     ....     ......|.+++|+|+|+ +|+++..++.|.+|+.+...+..+.
T Consensus       175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~  249 (361)
T 3scy_A          175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFK-----VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ  249 (361)
T ss_dssp             TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-----CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEEEcCCCCcccccceeeccccccee-----cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence            88999999753  2     1 21     1111     12234578999999997 6777778999999995433222221


Q ss_pred             ccCCCCCCCCCcceEEEccCCc-EEEEeCC-CCeEEeC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSNGN-ILVCDRE-NHRIQVF  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~-~~~i~v~  319 (319)
                      .......+...+.+++|+|||+ +|+++.. ++.|++|
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~  287 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF  287 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence            1111133445678999999998 5677776 7888886

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.79  E-value=1e-16  Score=130.84  Aligned_cols=204  Identities=20%  Similarity=0.163  Sum_probs=153.7

Q ss_pred             cCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccc------eeeE--EecCceeeEEcC-CCcEEEEcCCCCeEEE
Q psy13998         54 CFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTN------CVFL--AFTWPRGIAVGP-DNSIVVADSSNHRVQV  123 (319)
Q Consensus        54 ~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~------~~~~--~~~~~~~l~~~~-~g~~~~~~~~~~~i~~  123 (319)
                      .+..|.+|++++ ++.+|+++...+.|+.    +++...      ..+.  .+..|.++++++ .+++|+++...++|.+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~----~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~  185 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  185 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEE----EEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEE----EEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence            357899999997 6779999999999999    666431      1111  345789999997 6789999999999999


Q ss_pred             EcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        124 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      ++.+|.....+.     ......|.+|+++| .|.+|+++.. .+.|.+++++|..       ...+.     ...+..|
T Consensus       186 ~~~~g~~~~~l~-----~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-------~~~~~-----~~~l~~P  248 (400)
T 3p5b_L          186 ADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLV-----TENIQWP  248 (400)
T ss_dssp             ECTTTCSEEEEE-----ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-------CEEEE-----CSSCSCE
T ss_pred             EeCCCCceEEEE-----eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-------cEEEE-----ECCCCce
Confidence            998887655443     22456799999998 6799999865 4789999888632       11111     2245689


Q ss_pred             eeEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceE
Q psy13998        202 HYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFL  279 (319)
Q Consensus       202 ~~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~  279 (319)
                      .+|++++ .+++|+++...+.|.+++.+|...+.+...   ...+..|.+|+++ .+.+|+++...++|..++ .+|+.+
T Consensus       249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC---SSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC---CCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence            9999996 568999999999999999988665554211   2345678999995 458999999999999999 677766


Q ss_pred             Eee
Q psy13998        280 RAF  282 (319)
Q Consensus       280 ~~~  282 (319)
                      ..+
T Consensus       325 ~~i  327 (400)
T 3p5b_L          325 NLL  327 (400)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.79  E-value=1.5e-16  Score=125.66  Aligned_cols=215  Identities=15%  Similarity=0.178  Sum_probs=158.2

Q ss_pred             EEEEeCCCCeEEEeccccccccce-----eeEEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEE--EEecCCCcc
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNC-----VFLAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFV--GKFGSMGNK  140 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~  140 (319)
                      ++++.  ...|+.    +++....     .+..+..+.++++++ ++.+|+++...++|..++.++...  ..+      
T Consensus         7 ll~~~--~~~I~~----i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~------   74 (318)
T 3sov_A            7 LLYAN--RRDLRL----VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------   74 (318)
T ss_dssp             EEEEC--EEEEEE----EETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE------
T ss_pred             EEEEc--cCeEEE----EECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE------
Confidence            44443  467888    6654431     222456788999987 468999999999999999766521  111      


Q ss_pred             CCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC
Q psy13998        141 AGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN  218 (319)
Q Consensus       141 ~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~  218 (319)
                      ......|.++++++ .+++|+++...+.|.+++++|..       ...+.     ......|.+++++| .|.+|+++..
T Consensus        75 ~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-------~~~l~-----~~~~~~P~giavdp~~g~ly~td~~  142 (318)
T 3sov_A           75 VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-------RKVLF-----WQELDQPRAIALDPSSGFMYWTDWG  142 (318)
T ss_dssp             EECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEE-----CSSCSSEEEEEEEGGGTEEEEEECS
T ss_pred             cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-------EEEEE-----eCCCCCccEEEEeCCCCEEEEEecC
Confidence            12345789999997 78999999999999999988742       11111     23456799999997 5789999864


Q ss_pred             -CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcc
Q psy13998        219 -NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE  296 (319)
Q Consensus       219 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~  296 (319)
                       .+.|++++++|.....+.     ...+..|.+|+++++ +++|+++...++|..++.+|...+.+.     ......|.
T Consensus       143 ~~~~I~r~~~dG~~~~~~~-----~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~~P~  212 (318)
T 3sov_A          143 EVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPF  212 (318)
T ss_dssp             SSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSCCSCEE
T ss_pred             CCCEEEEEEcCCCCeEEEE-----ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-----cCCCCCce
Confidence             689999999886555442     234668999999984 689999999999999999886655553     23467899


Q ss_pred             eEEEccCCcEEEEeCCCCeEEe
Q psy13998        297 GVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       297 ~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      +++++. +.+|+++..+++|..
T Consensus       213 glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          213 ALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             EEEEET-TEEEEEETTTTEEEE
T ss_pred             EEEEeC-CEEEEEecCCCeEEE
Confidence            999974 578999998888864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=8.1e-17  Score=132.65  Aligned_cols=218  Identities=16%  Similarity=0.212  Sum_probs=150.1

Q ss_pred             cCCCCcceEEcCCCc-EEEEeCCCC----eEEEeccccccccceeeEEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC
Q psy13998         54 CFTWPRGIAVGPDNS-IVVADSSNH----RVQVCFPHFDLKTNCVFLAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~-~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~  127 (319)
                      ....|.+|+++++|+ +|+++..++    .+.+..++-.......+..+..|.+++++| +|.+|+++..+++|.+++.+
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            356799999999998 888887433    344422111111112333567899999999 78999999999999999987


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCc--eeeecCceeeeecccC-----CcCCCCC
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--VFQSDGTFVGKFGSMG-----NKAGQLE  199 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~  199 (319)
                      +.....+..    ......|.+++++++|+ +|+++...+.|.+++.++.  .+.....+....+..+     .....+.
T Consensus       257 ~~~~~~~~~----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~  332 (430)
T 3tc9_A          257 TQETTPLFT----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH  332 (430)
T ss_dssp             TTEEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred             CCcEEEEEE----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence            665432211    11225689999999997 8999999999999887642  1100000111111111     1123467


Q ss_pred             Cce-eEEEc--------CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC-----C------CCcccccCcceEEEcC-CCc
Q psy13998        200 HPH-YIAVS--------NTNRVIVSDSNNHRVQIFDVNGRVITSFGSE-----G------SEEGQLKFPRGVAVDD-QGY  258 (319)
Q Consensus       200 ~~~-~~~~~--------~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~i~~~~-~g~  258 (319)
                      .|. +++++        ++|.+|+++..+++|++++++|......+..     +      .....+..|.+|++++ +|.
T Consensus       333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  412 (430)
T 3tc9_A          333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC  412 (430)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             CCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence            788 78884        5689999999999999999988665555431     1      1123467899999999 589


Q ss_pred             EEEEeCCCCEEEEEcCC
Q psy13998        259 ISVGDSGNNRIQIFTPD  275 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~~~  275 (319)
                      +||++..+++|+.++++
T Consensus       413 lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          413 FFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCCCeEEEEccC
Confidence            99999999999999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.79  E-value=2.1e-16  Score=129.07  Aligned_cols=218  Identities=17%  Similarity=0.149  Sum_probs=158.6

Q ss_pred             cEEEEeCCCCeEEEeccccccccceee---EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCc-----EEEEecCCC
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGT-----FVGKFGSMG  138 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~  138 (319)
                      -++++.  ...|+.    .++......   ..+..|.+|++++ ++.+|+++...++|+.++.++.     ....+    
T Consensus        85 ~ll~~~--~~~I~~----i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~----  154 (400)
T 3p5b_L           85 YLFFTN--RHEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----  154 (400)
T ss_dssp             EEEEEE--TTEEEE----ECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE----
T ss_pred             eeEEec--cceeEE----EccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE----
Confidence            344443  368888    666543322   2456889999997 4679999999999999997662     22222    


Q ss_pred             ccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEe
Q psy13998        139 NKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSD  216 (319)
Q Consensus       139 ~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~  216 (319)
                        ......|.++++++ .+++|+++...+.|.+++++|...       ..+.     ...+..|.+|+++| .|.+|+++
T Consensus       155 --~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-------~~l~-----~~~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          155 --SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-------KTLF-----RENGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-------EEEE-----ECSSCCEEEEEEETTTTEEEEEE
T ss_pred             --eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-------EEEE-----eCCCCCcceEEEecccCeEEEEe
Confidence              22446789999998 789999999999999999887421       1111     12356799999998 57899998


Q ss_pred             CC-CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCC
Q psy13998        217 SN-NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKG  294 (319)
Q Consensus       217 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~  294 (319)
                      .. .+.|++++++|.....+.     ...+..|.+|+++++ +++|+++...++|..++.+|...+.+...   ......
T Consensus       221 ~~~~~~I~~~~~dG~~~~~~~-----~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~l~~  292 (400)
T 3p5b_L          221 WGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAH  292 (400)
T ss_dssp             CSSSCCEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC---SSTTSS
T ss_pred             CCCCCEEEEEeCCCCccEEEE-----ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC---CCCCCC
Confidence            65 478999999987655542     234568999999975 68999999999999999988765555321   234567


Q ss_pred             cceEEEccCCcEEEEeCCCCeEEe
Q psy13998        295 LEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       295 ~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      |.+|++. ++.+|+++...++|..
T Consensus       293 P~gl~v~-~~~lywtd~~~~~V~~  315 (400)
T 3p5b_L          293 PFSLAVF-EDKVFWTDIINEAIFS  315 (400)
T ss_dssp             EEEEEEE-TTEEEEEESSSCSEEE
T ss_pred             CEEEEEe-CCEEEEecCCCCeEEE
Confidence            9999995 4589999988888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.78  E-value=7e-17  Score=128.21  Aligned_cols=193  Identities=18%  Similarity=0.290  Sum_probs=139.6

Q ss_pred             CCCcceEEcCC-CcEEEEeCCCCeEEEeccccccccceeeEEe----------cCceeeEEcCCCcEEEEcCCC------
Q psy13998         56 TWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----------TWPRGIAVGPDNSIVVADSSN------  118 (319)
Q Consensus        56 ~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~g~~~~~~~~~------  118 (319)
                      ..|.+++++++ |++|++...+ .|.+    |+.. +. ...+          ..|.+++++++|++|+++..+      
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~-~l~~----~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRL-GLLV----VQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD  143 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTT-EEEE----EETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred             CCCceEEEecCCCcEEEEECCC-CEEE----EeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccc
Confidence            56899999999 9999988754 7888    6664 22 2222          357899999999999998755      


Q ss_pred             ---------CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEe----CCC-eEEEEeCCCCEEEEEecCC-ceeeecCc
Q psy13998        119 ---------HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS----NTN-RVIVSDSNNHRVQIFDVNG-RVFQSDGT  183 (319)
Q Consensus       119 ---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~g-~~~~~~~~~~~i~~~~~~~-~~~~~~~~  183 (319)
                               +.|..++.+++.....       .....+.+++++    +++ .+|+++..++.|.+|+.+. ..... ..
T Consensus       144 ~~~~~~~~~~~l~~~~~~g~~~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~-~~  215 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTDGQMIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KK  215 (314)
T ss_dssp             CCBTTSSSCEEEEEECTTSCEEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EE
T ss_pred             ccccccCCCCeEEEECCCCCEEEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc-ce
Confidence                     6799999766654332       122457899999    988 5788888889999998641 11100 01


Q ss_pred             eeeeecccCCcCCCC-CCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EE
Q psy13998        184 FVGKFGSMGNKAGQL-EHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-IS  260 (319)
Q Consensus       184 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~  260 (319)
                      ....+      .... ..|.+++++++|++|++...++.|.+|+++ ++....+      ......|.+++++++|+ +|
T Consensus       216 ~~~~~------~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~------~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          216 VWGHI------PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI------RCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEEEC------CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE------ECSSSCEEEEEECTTSSEEE
T ss_pred             EEEEC------CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE------eCCCCCceeEEECCCCCEEE
Confidence            11111      1122 468899999999999998888899999987 6655555      22235689999999998 89


Q ss_pred             EEeCCCCEEEEEcCC
Q psy13998        261 VGDSGNNRIQIFTPD  275 (319)
Q Consensus       261 v~~~~~~~i~~~~~~  275 (319)
                      +++..++.|.+|+.+
T Consensus       284 v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          284 VTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEETTTTEEEEEECS
T ss_pred             EEeCCCCeEEEEeCC
Confidence            998888999999964

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.78  E-value=4.5e-16  Score=124.08  Aligned_cols=226  Identities=12%  Similarity=0.127  Sum_probs=153.9

Q ss_pred             CCCcceEEcCC-CcEEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEE
Q psy13998         56 TWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFV  131 (319)
Q Consensus        56 ~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~  131 (319)
                      ..+.+.+++++ +.+|+++..++.|.+    |+..+.....  .-..+.+++++++|++|++.  ...|.+||. +++..
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~----~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHE----LHLASGRKTVHALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLT  122 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEE----EETTTTEEEEEECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEE----EECCCCcEEEEECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEE
Confidence            45678899996 668888888899999    7776543221  12367889999999988876  346999995 45543


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA  205 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (319)
                      .......  ......+.+++++++|++|++...      .+.|..++ ++.       +....       .....+.+++
T Consensus       123 ~~~~~~~--~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~-------~~~~~-------~~~~~~~~i~  185 (326)
T 2ghs_A          123 LHAELES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGK-------VTKLF-------ADISIPNSIC  185 (326)
T ss_dssp             EEECSST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTE-------EEEEE-------EEESSEEEEE
T ss_pred             EEeeCCC--CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCc-------EEEee-------CCCcccCCeE
Confidence            3222110  111245789999999999987642      35677776 432       11111       1123578899


Q ss_pred             EcCCCc-EEEEeCCCCeEEEEeCC---C-CE--EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce
Q psy13998        206 VSNTNR-VIVSDSNNHRVQIFDVN---G-RV--ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF  278 (319)
Q Consensus       206 ~~~~g~-~~v~~~~~~~i~~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~  278 (319)
                      ++++++ +|+++..++.|++|+.+   | ..  ...+...   ......|.+++++++|++|++...++.|.+|+++|+.
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~---~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~  262 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNH  262 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCE
T ss_pred             EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC---CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCE
Confidence            999985 77888888999999963   4 21  0111000   1122357899999999999998878899999998888


Q ss_pred             EEeecccCCCCCCCCCcceEEEc-cCCc-EEEEeCCC
Q psy13998        279 LRAFGCWGSGDGEFKGLEGVAVM-SNGN-ILVCDREN  313 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~-~~g~-~~v~~~~~  313 (319)
                      +..+.      .....|.+++|+ ++++ +|++...+
T Consensus       263 ~~~i~------~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          263 IARYE------VPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEEEE------CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEEEE------CCCCCcEEEEEecCCCCEEEEEecCC
Confidence            77773      334569999998 7865 77776654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.77  E-value=3.2e-17  Score=145.23  Aligned_cols=240  Identities=8%  Similarity=-0.027  Sum_probs=153.1

Q ss_pred             CCCcceEEcCCCcEEEEeCC-CC-----eEEEeccccccccceeeEEec----------------------------Cce
Q psy13998         56 TWPRGIAVGPDNSIVVADSS-NH-----RVQVCFPHFDLKTNCVFLAFT----------------------------WPR  101 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~-~~-----~v~~~~~~~~~~~~~~~~~~~----------------------------~~~  101 (319)
                      ..+.+++|+|||+.+++.+. ++     .|++    |+..++.....+.                            .+.
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~----~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWS----YDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEE----EETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEE----EECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            56889999999998887776 77     8999    8887665443221                            257


Q ss_pred             eeEEcCCCcEEEEcCCCCeEEEEcCCCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998        102 GIAVGPDNSIVVADSSNHRVQVFQSDGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus       102 ~l~~~~~g~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      +++|+|||+.++.... +.|++|+..+.   ....+      ..+...+..++|+|||+.++..+ ++.|.+|++.+...
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence            8999999987666554 89999995543   33333      22335678999999998777665 46899999876322


Q ss_pred             eecCceeeeecccCC-c---------CCCCCCceeEEEcCCCcEEEEeCCCC----------------------------
Q psy13998        179 QSDGTFVGKFGSMGN-K---------AGQLEHPHYIAVSNTNRVIVSDSNNH----------------------------  220 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~g~~~v~~~~~~----------------------------  220 (319)
                            ......... .         ......+.+++++|+|+.++....++                            
T Consensus       185 ------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  258 (741)
T 2ecf_A          185 ------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD  258 (741)
T ss_dssp             ------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred             ------EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence                  111100000 0         00012246799999997655543322                            


Q ss_pred             -----eEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-----CCCEEEEEcC-CCceEEeecccCCC
Q psy13998        221 -----RVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-----GNNRIQIFTP-DGQFLRAFGCWGSG  288 (319)
Q Consensus       221 -----~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-----~~~~i~~~~~-~g~~~~~~~~~~~~  288 (319)
                           .|++||.++ .....+...   ..+...+..++| |||+.++...     .+..|++||. +++....+....  
T Consensus       259 ~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--  332 (741)
T 2ecf_A          259 ANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--  332 (741)
T ss_dssp             CCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--
T ss_pred             CCCeeEEEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--
Confidence                 788888655 433333211   123445788999 9998666443     3568999995 455544442110  


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ......+.+++|+|||++++++..++.+++|
T Consensus       333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~  363 (741)
T 2ecf_A          333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLY  363 (741)
T ss_dssp             SSCCCCCSCCEECTTSCEEEEECTTSSCEEE
T ss_pred             CCcCCcCCceEECCCCeEEEEecCCCccEEE
Confidence            0111135688999999988888888877765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.77  E-value=2.6e-16  Score=137.80  Aligned_cols=216  Identities=19%  Similarity=0.165  Sum_probs=160.4

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccc------eeeE--EecCceeeEEcCCC-cEEEEcCCCCeEEEE
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTN------CVFL--AFTWPRGIAVGPDN-SIVVADSSNHRVQVF  124 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~------~~~~--~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~  124 (319)
                      +..|.+|++++ ++++|+++...+.|+.    +++...      ..+.  .+..|.+|++++.+ ++|+++...++|.++
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~----~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  498 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEE----EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEE----EeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence            57789999998 6779999999999998    666431      1111  34579999999765 799999999999999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      +.+|+....+.     ...+..|.+|++++ .|.+|+++... .+|.+.+++|..       ...+.     ...+..|.
T Consensus       499 ~ldG~~~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-------~~~lv-----~~~l~~P~  561 (791)
T 3m0c_C          499 DTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLV-----TENIQWPN  561 (791)
T ss_dssp             ETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEE-----CSSCSCEE
T ss_pred             eCCCCeEEEEE-----eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-------eEEEE-----eCCCCCce
Confidence            98887665553     23456799999998 58999999765 889999988742       22221     23456899


Q ss_pred             eEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEE
Q psy13998        203 YIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLR  280 (319)
Q Consensus       203 ~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~  280 (319)
                      +|++++ .+++|+++...+.|.+++.+|.....+...   ...+..|.+|++.. +++|+++...++|..++ .+|+.+.
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~---~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC---CCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceE
Confidence            999995 679999999999999999988765555211   23456788999865 48999999999999998 5776655


Q ss_pred             eecccCCCCCCCCCcceEEEc
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~  301 (319)
                      .+      ......|.+|++.
T Consensus       638 ~l------~~~l~~P~~i~v~  652 (791)
T 3m0c_C          638 LL------AENLLSPEDMVLF  652 (791)
T ss_dssp             EE------ECSCSCCCCEEEE
T ss_pred             Ee------ecCCCCceeEeee
Confidence            55      2334456666553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=2.2e-16  Score=129.87  Aligned_cols=216  Identities=18%  Similarity=0.212  Sum_probs=151.0

Q ss_pred             cCCCCcceEE-------cCCCc-EEEEeCCCC------eEEEecccccccc----c-----eeeEEecCceeeEEcC-CC
Q psy13998         54 CFTWPRGIAV-------GPDNS-IVVADSSNH------RVQVCFPHFDLKT----N-----CVFLAFTWPRGIAVGP-DN  109 (319)
Q Consensus        54 ~~~~~~~v~~-------~~~g~-~~~~~~~~~------~v~~~~~~~~~~~----~-----~~~~~~~~~~~l~~~~-~g  109 (319)
                      .+..|.+|++       +++|+ +|++...++      .|.+    ++...    .     ..+..+..|.+++++| ++
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~----i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g  259 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI----IKRNADGTFDDRSDIQLIAAYKQCNGATIHPING  259 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEE----EECCTTSCCSTTSCEEEEEEESCCCCEEECTTTC
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEE----EecCCCCceeecccceeeccCCCceEEEEcCCCC
Confidence            4667999999       99998 888887652      3666    42222    0     2334667899999999 57


Q ss_pred             cEEEEcCCCCeEEEEcCC--------CcE-----------EEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEE
Q psy13998        110 SIVVADSSNHRVQVFQSD--------GTF-----------VGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQ  169 (319)
Q Consensus       110 ~~~~~~~~~~~i~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~  169 (319)
                      .+|++...++.|++++.+        +..           ...+..    ......|.+|+++|+|+ +|+++...++|+
T Consensus       260 ~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~----~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~  335 (496)
T 3kya_A          260 ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT----IADPSWEFQIFIHPTGKYAYFGVINNHYFM  335 (496)
T ss_dssp             CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe----cCCCCCceEEEEcCCCCEEEEEeCCCCEEE
Confidence            899999999999999954        432           112111    11234678999999997 799999999999


Q ss_pred             EEecCCce--eeecCceeeeecccC-----CcCCCCCCce-eEEEc-------CCCcEEEEeCCCCeEEEEeCCCCEEEE
Q psy13998        170 IFDVNGRV--FQSDGTFVGKFGSMG-----NKAGQLEHPH-YIAVS-------NTNRVIVSDSNNHRVQIFDVNGRVITS  234 (319)
Q Consensus       170 ~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~-------~~g~~~v~~~~~~~i~~~~~~~~~~~~  234 (319)
                      +++.++..  +.....+....+..+     .....+..|. +++++       ++|.+|+++..+++|++++++|.....
T Consensus       336 kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~Ti  415 (496)
T 3kya_A          336 RSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTY  415 (496)
T ss_dssp             EEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEE
T ss_pred             EEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEE
Confidence            98765421  100000111111111     1234677899 78886       678999999999999999999865554


Q ss_pred             eCCC-----------CC------CcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCc
Q psy13998        235 FGSE-----------GS------EEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       235 ~~~~-----------~~------~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~  277 (319)
                      .+..           +.      ....+..|.+|+++++ |.+||++..+++|+.++.++.
T Consensus       416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            4331           11      1235788999999997 999999999999999997664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.76  E-value=1.5e-16  Score=140.57  Aligned_cols=277  Identities=10%  Similarity=0.029  Sum_probs=159.7

Q ss_pred             ccccccCCCccchhccccceeeeecccCCCCCcC--------C---CCcceEEcCCCcEEEEeCCC---------CeEEE
Q psy13998         22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF--------T---WPRGIAVGPDNSIVVADSSN---------HRVQV   81 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~---~~~~v~~~~~g~~~~~~~~~---------~~v~~   81 (319)
                      .....++|+|++.++.+ +.+..+..|+...+..        .   .+.+++|+|||+.++.++.+         +.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            44678899999998766 4455666665443321        1   38899999999987776543         78889


Q ss_pred             eccccccccceeeEEec-------CceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccC------------
Q psy13998         82 CFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKA------------  141 (319)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~------------  141 (319)
                          |+..+... ..+.       .+..++|+|||+.++..+. +.|++|+.. ++............            
T Consensus        96 ----~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           96 ----SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             ----EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             ----EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence                88876554 2221       2567899999976655543 689999954 44443332110000            


Q ss_pred             CCCCCceeEEEeCCCeEEEEeCCCC----------------------------------EEEEEecCCceeeecCceeee
Q psy13998        142 GQLEHPHYIAVSNTNRVIVSDSNNH----------------------------------RVQIFDVNGRVFQSDGTFVGK  187 (319)
Q Consensus       142 ~~~~~~~~l~~~~~g~~~~~~~~~~----------------------------------~i~~~~~~~~~~~~~~~~~~~  187 (319)
                      .....+.+++|+|||+.++..+.++                                  .|.+||+.+.      +....
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~------~~~~~  243 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP------THDLE  243 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS------CCCEE
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC------ceeEE
Confidence            0012347899999998776654221                                  5677776542      11111


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCcEEEEeC----CCCeEEEEeCC-CCEEEEeCCCCCCccccc-CcceEEEcCCCc-EE
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDS----NNHRVQIFDVN-GRVITSFGSEGSEEGQLK-FPRGVAVDDQGY-IS  260 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~----~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~-~~  260 (319)
                      +........+......++++|+|+++++..    .+..|++||.. ++....+....  ..... .+..++|+|||+ ++
T Consensus       244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~  321 (723)
T 1xfd_A          244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKFF  321 (723)
T ss_dssp             CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSEE
T ss_pred             eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccCCCceEcCCCCeEE
Confidence            111000011123456789999998775542    23579999964 44443321100  00000 024789999997 44


Q ss_pred             EE-eCCCC------EEEEEc-CCCce---EEeecccCCCCCCCCCcc-eEEEccCCcEE-EEeCCC--CeEEeC
Q psy13998        261 VG-DSGNN------RIQIFT-PDGQF---LRAFGCWGSGDGEFKGLE-GVAVMSNGNIL-VCDREN--HRIQVF  319 (319)
Q Consensus       261 v~-~~~~~------~i~~~~-~~g~~---~~~~~~~~~~~~~~~~~~-~l~~~~~g~~~-v~~~~~--~~i~v~  319 (319)
                      ++ ...++      .|++|+ .++..   ...+      ......+. .++|+|||+.+ +++..+  +.+++|
T Consensus       322 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             EEEecccCCCcceeEEEEEeccCCCCccceeEe------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence            43 44555      688888 44443   3443      11122233 36899999854 455444  566665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.76  E-value=1.3e-15  Score=133.36  Aligned_cols=212  Identities=18%  Similarity=0.150  Sum_probs=155.9

Q ss_pred             CCeEEEeccccccccceee---EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCc-----EEEEecCCCccCCCCCC
Q psy13998         76 NHRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGT-----FVGKFGSMGNKAGQLEH  146 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~  146 (319)
                      ...|+.    +++......   ..+..+.+|++++ ++.+|+++...++|+.++.++.     ....+      ...+..
T Consensus       403 ~~~Ir~----i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi------~~~l~~  472 (791)
T 3m0c_C          403 RHEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------SRDIQA  472 (791)
T ss_dssp             BSSEEE----ECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE------CSSCSC
T ss_pred             ccceeE----eeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE------ecCCCC
Confidence            356776    555433222   2456789999997 5689999999999999997663     22222      224567


Q ss_pred             ceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCC-CeEE
Q psy13998        147 PHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNN-HRVQ  223 (319)
Q Consensus       147 ~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~-~~i~  223 (319)
                      |.+|++++. +++|+++...++|.+++++|..       ...+.     ...+..|.+|+++|. |.+|+++... ++|.
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-------~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~  540 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  540 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-------EEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCe-------EEEEE-----eCCCCCcceEEEecCCCCEEEecCCCCCeEE
Confidence            899999974 5999999999999999998742       21111     123467999999985 7899999765 8999


Q ss_pred             EEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998        224 IFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      +++++|.....+.     ...+..|.+|++++. +++|+++...++|.+++.+|...+.+...   ...+..|.+|++..
T Consensus       541 ~~~~dG~~~~~lv-----~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~---~~~l~~P~glav~~  612 (791)
T 3m0c_C          541 KGGLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFE  612 (791)
T ss_dssp             EEETTSCCEEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEET
T ss_pred             EEecCCCceEEEE-----eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC---CCccCCCCEEEEeC
Confidence            9999997776653     334678999999964 68999999999999999988766655321   23456788999864


Q ss_pred             CCcEEEEeCCCCeEEe
Q psy13998        303 NGNILVCDRENHRIQV  318 (319)
Q Consensus       303 ~g~~~v~~~~~~~i~v  318 (319)
                       +++|+++...++|..
T Consensus       613 -~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          613 -DKVFWTDIINEAIFS  627 (791)
T ss_dssp             -TEEEEEETTTTEEEE
T ss_pred             -CEEEEEECCCCEEEE
Confidence             489999999888864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=1.5e-16  Score=124.97  Aligned_cols=225  Identities=13%  Similarity=0.077  Sum_probs=143.9

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc-ceeeEEe-----cCceeeEEcCCCcEEEEcC--C--CCeEEEE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT-NCVFLAF-----TWPRGIAVGPDNSIVVADS--S--NHRVQVF  124 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~-----~~~~~l~~~~~g~~~~~~~--~--~~~i~~~  124 (319)
                      ...+.+++|+|+|+++++++ ++.|++    |+..+ .......     ..+.+++|+|+++.+++..  .  ...|..+
T Consensus        41 ~~~v~~~~~spdg~~l~~~~-~~~i~~----~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           41 PELFEAPNWSPDGKYLLLNS-EGLLYR----LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             SSCCEEEEECTTSSEEEEEE-TTEEEE----EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             CcceEeeEECCCCCEEEEEc-CCeEEE----EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence            45789999999999888775 789999    88876 4443322     2456799999998776655  2  3567777


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      +..+.....+..       ...+..++++|+++.++ +...++.+.+|+.+..     +.....+      ..+...+.+
T Consensus       116 ~~~~~~~~~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~------~~~~~~~~~  177 (297)
T 2ojh_A          116 PSTGGTPRLMTK-------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-----SGVETRL------THGEGRNDG  177 (297)
T ss_dssp             ETTCCCCEECCS-------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT-----TCCEEEC------CCSSSCEEE
T ss_pred             ECCCCceEEeec-------CCCccceEECCCCCEEEEEECCCCceEEEEEECC-----CCcceEc------ccCCCcccc
Confidence            754444443321       12367889999997554 6777888888874311     1111111      223345678


Q ss_pred             EEEcCCCcEEE-EeCCCCeEEEEe--CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----------CEE
Q psy13998        204 IAVSNTNRVIV-SDSNNHRVQIFD--VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----------NRI  269 (319)
Q Consensus       204 ~~~~~~g~~~v-~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----------~~i  269 (319)
                      ++++|+++.++ +...++.+.+|+  .++.....+      ..+...+..++|+|+|++++..+.+           ..|
T Consensus       178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI------TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC------CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE------ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence            99999997554 444456666665  456555555      2333456789999999866655543           579


Q ss_pred             EEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        270 QIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       270 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      ++|+.++ +.......    ..+...+..++|+|+|+.+++.+.
T Consensus       252 ~~~d~~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          252 QLMDMDGGNVETLFDL----FGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EEEETTSCSCEEEEEE----EESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             EEEecCCCCceeeecc----CCCCcccccceECCCCCEEEEEEe
Confidence            9999654 33222210    234456888999999996555443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.76  E-value=1.2e-15  Score=131.10  Aligned_cols=214  Identities=14%  Similarity=0.146  Sum_probs=160.3

Q ss_pred             EEEEeCCCCeEEEeccccccccceeeE-----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCC
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAG  142 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  142 (319)
                      ++++  ..+.|+.    .++.+.....     .+..|.+|++++. +.+|+++..+++|..++.+|.....+.     ..
T Consensus         9 Ll~s--~~~~I~~----i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-----~~   77 (628)
T 4a0p_A            9 LLFS--RRADIRR----ISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-----EF   77 (628)
T ss_dssp             EEEE--ETTEEEE----EESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CS
T ss_pred             EEEE--eCCcEEE----EECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-----eC
Confidence            4444  3467888    6665433211     3457889999975 679999999999999998775433332     22


Q ss_pred             CCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC-C
Q psy13998        143 QLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-N  219 (319)
Q Consensus       143 ~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~-~  219 (319)
                      ....|.+|++++ .+++|+++...++|.+.+++|..       ...+.     ...+..|.+|+++| .|.+|+++.. .
T Consensus        78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-------~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~  145 (628)
T 4a0p_A           78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-------RQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGK  145 (628)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-------CEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSS
T ss_pred             CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-------EEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCC
Confidence            335789999996 67999999999999999988742       11111     13456799999997 6899999965 6


Q ss_pred             CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceE
Q psy13998        220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGV  298 (319)
Q Consensus       220 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  298 (319)
                      ++|.+++++|.....+      ...+..|.+|+++++ +++|+++...+.|..++.+|...+.+      ......|.+|
T Consensus       146 ~~I~r~~~dG~~~~~l------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~------~~~l~~P~gl  213 (628)
T 4a0p_A          146 PKIDRAAMDGSERTTL------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI------ADDLPHPFGL  213 (628)
T ss_dssp             CEEEEEETTSCSCEEE------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE------EECCSCEEEE
T ss_pred             CEEEEEeCCCCceEEE------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEe------eccCCCceEE
Confidence            8999999998766655      234668999999986 68999999999999999887655444      2345679999


Q ss_pred             EEccCCcEEEEeCCCCeEEe
Q psy13998        299 AVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       299 ~~~~~g~~~v~~~~~~~i~v  318 (319)
                      +++. +.+|+++..+++|..
T Consensus       214 av~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          214 TQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             EEET-TEEEEEETTTTEEEE
T ss_pred             EEEC-CEEEEecCCCCEEEE
Confidence            9986 689999998888764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=8.2e-16  Score=123.11  Aligned_cols=205  Identities=12%  Similarity=0.049  Sum_probs=137.2

Q ss_pred             CCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEec---------CceeeEEcCCCcEEEEcC----------
Q psy13998         57 WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------WPRGIAVGPDNSIVVADS----------  116 (319)
Q Consensus        57 ~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~g~~~~~~~----------  116 (319)
                      .|.+++++|+|+ +++++..++.|.+    |+..+.+....+.         .+.+++++|+|+.+++..          
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVK----IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEE----EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEE----EECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence            489999999996 6788888899999    8887666554332         678899999996544442          


Q ss_pred             --CCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee-------------
Q psy13998        117 --SNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS-------------  180 (319)
Q Consensus       117 --~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~-------------  180 (319)
                        .++.|.+||. +++.+..+..       ...+.+++++|+|+.+++.  ++.|.+||+.+.....             
T Consensus       111 ~~~~~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  181 (337)
T 1pby_B          111 EVQPTRVALYDAETLSRRKAFEA-------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYA  181 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEEC-------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBC
T ss_pred             cccCceEEEEECCCCcEEEEEeC-------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCcee
Confidence              4689999994 5555555532       1356889999999755544  5789999987543210             


Q ss_pred             --cCcee---------------------------------eeecccCC------cCCCCCCceeEEEcCCCcEEEEeCCC
Q psy13998        181 --DGTFV---------------------------------GKFGSMGN------KAGQLEHPHYIAVSNTNRVIVSDSNN  219 (319)
Q Consensus       181 --~~~~~---------------------------------~~~~~~~~------~~~~~~~~~~~~~~~~g~~~v~~~~~  219 (319)
                        +++.+                                 ..+.....      ...+...+.+++++|+|+++++.  +
T Consensus       182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~  259 (337)
T 1pby_B          182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y  259 (337)
T ss_dssp             CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred             CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence              00000                                 00000000      00112346679999999766665  6


Q ss_pred             CeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeec
Q psy13998        220 HRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFG  283 (319)
Q Consensus       220 ~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~  283 (319)
                      +.|++||.. ++.+..+.       ....|.+++++|+|+.+++++.++.|.+|+. +++.+..+.
T Consensus       260 ~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          260 NVLESFDLEKNASIKRVP-------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEECCCCcCcceec-------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            899999975 45555542       1235789999999986666678999999995 677777763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=3.4e-16  Score=137.93  Aligned_cols=268  Identities=11%  Similarity=0.060  Sum_probs=164.1

Q ss_pred             ccccccCCCccchhccccceeeeecccCCCCCc-------CCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc----
Q psy13998         22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC-------FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT----   90 (319)
Q Consensus        22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~----   90 (319)
                      ..+..+++||++.++....  ..+..|+...+.       -..+..++|+|+|+.++.. .++.|++    |+..+    
T Consensus        82 ~~v~~~~~spd~~~~~~~~--~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v----~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFTQ--GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYI----ARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTTTEEEEEET--TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEE----EECBCTTSC
T ss_pred             cCceeEEECCCCeEEEEEC--CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEE----EecCccccc
Confidence            3588889999944444322  334344333222       2457889999999977774 5789999    88866    


Q ss_pred             -ceeeEEe--c-C---------------ceeeEEcCCCcEEEEcC---------------------------------CC
Q psy13998         91 -NCVFLAF--T-W---------------PRGIAVGPDNSIVVADS---------------------------------SN  118 (319)
Q Consensus        91 -~~~~~~~--~-~---------------~~~l~~~~~g~~~~~~~---------------------------------~~  118 (319)
                       +......  . .               +.+++|+|||+.++..+                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             4333211  1 1               47899999998666654                                 34


Q ss_pred             CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC-----EEEEEecCCceeeecCceeeeecccCC
Q psy13998        119 HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-----RVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      ..|++||..+.....+...   ..+...+..++|+|+|+.+++...+.     .|.+||..+.      +......... 
T Consensus       235 ~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g------~~~~~~~~~~-  304 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTG---EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG------RFVRTLFVET-  304 (706)
T ss_dssp             EEEEEEETTTTEEEECCCC---SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC------CEEEEEEEEE-
T ss_pred             eEEEEEECCCCceEeeccC---CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC------ceeeEEEEcc-
Confidence            6799999655443333211   12335678899999998666544333     8999998753      1111110000 


Q ss_pred             cCCCCCCceeEEEcC--CCcEEEEeCCCCeEEEE--eCCCCEEEEeCCCCCCcccccCcce-EEEcCCCc-EEEEeCCCC
Q psy13998        194 KAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIF--DVNGRVITSFGSEGSEEGQLKFPRG-VAVDDQGY-ISVGDSGNN  267 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~--~g~~~v~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~g~-~~v~~~~~~  267 (319)
                      ..........++++|  +|+++++...++.+.+|  +.++..+..+      ..+...+.. ++++|+|+ +++++..++
T Consensus       305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l------~~~~~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV------TKGEWEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC------CCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred             CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec------CCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence            011111235689999  99988887766655555  5567766666      222223444 79999986 566666655


Q ss_pred             ----EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC-C---CeEEeC
Q psy13998        268 ----RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE-N---HRIQVF  319 (319)
Q Consensus       268 ----~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~-~---~~i~v~  319 (319)
                          .|+.|+.++.....+       .+...+.+++|+|||+.++.... .   ..|.+|
T Consensus       379 ~~~~~l~~~d~~~~~~~~l-------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~  431 (706)
T 2z3z_A          379 PLERHFYCIDIKGGKTKDL-------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVT  431 (706)
T ss_dssp             TTCBEEEEEETTCCCCEES-------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEE
T ss_pred             CceEEEEEEEcCCCCceec-------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEE
Confidence                788888655444444       23445788999999986654422 2   346654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=6.8e-16  Score=124.25  Aligned_cols=228  Identities=17%  Similarity=0.139  Sum_probs=145.9

Q ss_pred             cCCCccchhccccceeeeecccCCCCCcC-------C--CCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEE
Q psy13998         27 VGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------T--WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLA   96 (319)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~--~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~   96 (319)
                      +++++++.++.+...+..+..++...+..       .  .|.+++++|+|+ +++++..++.|.+    |+..+.+....
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~----~d~~t~~~~~~   80 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG----IDLDTCKNTFH   80 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE----EETTTTEEEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEE----EeCCCCcEEEE
Confidence            45566666666655444544444333221       2  588999999997 6778888899999    88877665543


Q ss_pred             ec----------CceeeEEcCCCcEEEEcCC------------CCeEEEEcC-CCcE---EEEecCCCccCCCCCCceeE
Q psy13998         97 FT----------WPRGIAVGPDNSIVVADSS------------NHRVQVFQS-DGTF---VGKFGSMGNKAGQLEHPHYI  150 (319)
Q Consensus        97 ~~----------~~~~l~~~~~g~~~~~~~~------------~~~i~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~l  150 (319)
                      +.          .+.+++++|+|+.+++...            .+.|.+||. +++.   +....       ....+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~  153 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-------MPRQVYLM  153 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-------CCSSCCCE
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-------CCCcccce
Confidence            33          2789999999976555543            379999994 4322   12221       11356889


Q ss_pred             EEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC------------------C-------------------
Q psy13998        151 AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG------------------N-------------------  193 (319)
Q Consensus       151 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~-------------------  193 (319)
                      +++|+|++|+. +  +.|.+||..+...      +..+....                  .                   
T Consensus       154 ~~s~dg~l~~~-~--~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  224 (349)
T 1jmx_B          154 RAADDGSLYVA-G--PDIYKMDVKTGKY------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  224 (349)
T ss_dssp             EECTTSCEEEE-S--SSEEEECTTTCCE------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             eECCCCcEEEc-c--CcEEEEeCCCCce------eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence            99999996664 3  3399999864321      11111000                  0                   


Q ss_pred             -------------------------cCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCccccc
Q psy13998        194 -------------------------KAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       194 -------------------------~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~  246 (319)
                                               .......+.+++++| +++++++.  ++.|++||.. ++.+..+.       ...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------~~~  295 (349)
T 1jmx_B          225 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-------LDH  295 (349)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-------CSS
T ss_pred             CccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-------CCC
Confidence                                     000112456778889 98776666  7899999974 55555542       112


Q ss_pred             CcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeec
Q psy13998        247 FPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFG  283 (319)
Q Consensus       247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~  283 (319)
                      .+.+++++|+|+.+++++.++.|.+||. +++.+..+.
T Consensus       296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            4789999999875555677899999995 567776663

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.74  E-value=1.6e-15  Score=130.19  Aligned_cols=199  Identities=16%  Similarity=0.205  Sum_probs=151.9

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccccee--eE--EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCC
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCV--FL--AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~  128 (319)
                      +..|.+|++++ ++++|+++..++.|..    +++.....  +.  .+..|.+|++++. +++|+++...++|.+.+.+|
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r----~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG  111 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISR----AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG  111 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEE----EETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEE----EECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC
Confidence            56789999998 5779999999999999    66643222  11  2347999999965 67999999999999999888


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .....+.     ......|.+|+++| .|.+|+++.. ..+|...+++|..       ...+      ......|.+|++
T Consensus       112 ~~~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-------~~~l------~~~~~~P~Glal  173 (628)
T 4a0p_A          112 QHRQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-------RTTL------VPNVGRANGLTI  173 (628)
T ss_dssp             TTCEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEE------ECSCSSEEEEEE
T ss_pred             CcEEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-------eEEE------ECCCCCcceEEE
Confidence            6544442     23457899999998 7899999954 6889999888742       1111      113568999999


Q ss_pred             cCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998        207 SNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       207 ~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~  282 (319)
                      +++ +++|+++...+.|..++.+|.....+      ...+..|.+|+++. +++|+++...++|..+++ +|+....+
T Consensus       174 D~~~~~LY~aD~~~~~I~~~d~dG~~~~v~------~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          174 DYAKRRLYWTDLDTNLIESSNMLGLNREVI------ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEE------EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ccccCEEEEEECCCCEEEEEcCCCCceEEe------eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            985 68999999999999999887544444      33456789999986 699999999999999994 56544333

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.74  E-value=2.3e-15  Score=129.17  Aligned_cols=194  Identities=20%  Similarity=0.305  Sum_probs=150.3

Q ss_pred             EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEec
Q psy13998         96 AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDV  173 (319)
Q Consensus        96 ~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~  173 (319)
                      .+..|.+|++++ ++.+|+++...+.|+.++.+|.....+.     ......|.+++++. .+++|+++...+.|.+.++
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-----~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~  421 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-----TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL  421 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-----ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence            355788999997 5789999999999999998775433332     23346789999996 7899999999999999998


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV  251 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (319)
                      +|..       ...+.     ...+..|.+|+++|. |.+|+++... ..|...+++|.....+.     ...+.+|.+|
T Consensus       422 ~G~~-------~~~l~-----~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-----~~~l~~P~Gl  484 (619)
T 3s94_A          422 NGTM-------RKILI-----SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-----NTSLGWPNGL  484 (619)
T ss_dssp             TSCS-------CEEEE-----CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEE
T ss_pred             CCCe-------EEEEE-----ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-----eCCCCCCeee
Confidence            8742       11111     224678999999985 8999999754 78999999887554442     3356789999


Q ss_pred             EEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        252 AVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       252 ~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      +++++ +++|+++...++|..++.+|...+.+.     ......|.+|++..+ .+|+++...++|.
T Consensus       485 alD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-----~~~l~~P~glav~~~-~ly~tD~~~~~I~  545 (619)
T 3s94_A          485 ALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV-----EDKIPHIFGFTLLGD-YVYWTDWQRRSIE  545 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----ECCCCSSCCEEEETT-EEEEECTTSSCEE
T ss_pred             EEcccCCEEEEEECCCCEEEEEecCCCceEEEe-----ccCCCCcEEEEEECC-EEEEeecCCCeEE
Confidence            99974 689999999999999998887665543     234567899999865 8999999888775

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.74  E-value=1.6e-15  Score=130.21  Aligned_cols=202  Identities=14%  Similarity=0.176  Sum_probs=148.9

Q ss_pred             cCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccce---eeE--EecCceeeEEcC-CCcEEEEcCCCCeEEEEcC
Q psy13998         54 CFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNC---VFL--AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        54 ~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~~--~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~  126 (319)
                      .+..|.+|++++ ++.+|+++...++|..    +++....   .+.  .+..|.+|++++ .+++|+++...++|.+.+.
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r----~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~  113 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKR----TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL  113 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEE----EEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEE----EEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence            467899999998 6679999999999999    6664331   111  345899999998 5679999999999999998


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      +|+....+.     ......|.+|+++| .|.+|+++.. ...|...+++|..       ...+.     ......|.+|
T Consensus       114 dG~~~~~l~-----~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-------~~~l~-----~~~~~~P~Gl  176 (619)
T 3s94_A          114 DGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-------RFIII-----NSEIYWPNGL  176 (619)
T ss_dssp             TSCSCEEEE-----CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEEE-----CSSCSSEEEE
T ss_pred             CCCCEEEEE-----eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-------eEEEE-----eCCCCCCcEE
Confidence            887655443     23457799999998 5889999865 5788888887632       11111     1235689999


Q ss_pred             EEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998        205 AVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       205 ~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~  282 (319)
                      ++++ ++++|+++...+.|.+++.+|...+.+.     ......|.+|+++++ ++|+++..+++|.++++ +|+....+
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-----~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCCccEEEE-----eCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            9997 5799999999999999999987666552     224567899999877 99999999999999995 56554443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.73  E-value=4e-16  Score=124.26  Aligned_cols=197  Identities=16%  Similarity=0.196  Sum_probs=138.2

Q ss_pred             CCCcceEEcC-CCcEEEEeCCCCeEEEecccccccccee--eE------EecCceeeEEcC-CCcEEEEcCC--------
Q psy13998         56 TWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCV--FL------AFTWPRGIAVGP-DNSIVVADSS--------  117 (319)
Q Consensus        56 ~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~------~~~~~~~l~~~~-~g~~~~~~~~--------  117 (319)
                      ..|.+|++++ +|++|+++... .+.+    ++..+...  +.      .+..|.++++++ +|++|+++..        
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~-~i~~----~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYY-HLSV----VGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTT-EEEE----ECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             CCCceEEEcCCCCcEEEEECCC-CEEE----EeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence            4689999997 89999997764 4777    66543211  11      234689999999 9999998754        


Q ss_pred             ---------CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeee
Q psy13998        118 ---------NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGK  187 (319)
Q Consensus       118 ---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  187 (319)
                               .+.|.+++.++.....+.      .....|.+++++++|+ +|++....+.|.+|++++..   .+.. ..
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~---~~~~-~~  224 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLLL------KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK---KGTA-EV  224 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEEE------EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT---TTCE-EE
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEec------cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc---CCcc-ce
Confidence                     367999996544333331      1235679999999985 88998888999999987521   0111 11


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCcEEEEeCC----------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN----------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g  257 (319)
                      +..      ... |.+++++++|++|++...          .+.|.+++++|+.+..+.....  ..+..+.++++ .+|
T Consensus       225 ~~~------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g--~~~~~~~~~~~-~~g  294 (322)
T 2fp8_A          225 LVK------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPP--FAGEHFEQIQE-HDG  294 (322)
T ss_dssp             EEE------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTT--TTTSCCCEEEE-ETT
T ss_pred             EEe------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCC--CccccceEEEE-eCC
Confidence            110      112 899999999999999865          5789999999988877743211  11456777777 478


Q ss_pred             cEEEEeCCCCEEEEEcCCCc
Q psy13998        258 YISVGDSGNNRIQIFTPDGQ  277 (319)
Q Consensus       258 ~~~v~~~~~~~i~~~~~~g~  277 (319)
                      ++|+++..++.|.+++.+.+
T Consensus       295 ~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          295 LLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEECSSCSEEEEEEC---
T ss_pred             EEEEeecCCCceEEEecccc
Confidence            99999999999999997643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.73  E-value=1.4e-15  Score=134.02  Aligned_cols=235  Identities=9%  Similarity=0.041  Sum_probs=146.4

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEcCC-----
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQSD-----  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-----  127 (319)
                      ..+.+++|+|++.++++  .++.+++    |+..+.......   ..+..++|+|+|+.++.. .++.|++|+..     
T Consensus        82 ~~v~~~~~spd~~~~~~--~~~~i~~----~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF--TQGGLVG----FDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTTTEEEEE--ETTEEEE----EETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCCCeEEEE--ECCEEEE----EECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence            45889999999545554  3489999    888765543322   246789999999876664 57899999954     


Q ss_pred             -CcEEEEecCCCcc--------CCCCCCceeEEEeCCCeEEEEeC---------------------------------CC
Q psy13998        128 -GTFVGKFGSMGNK--------AGQLEHPHYIAVSNTNRVIVSDS---------------------------------NN  165 (319)
Q Consensus       128 -~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~g~~~~~~~---------------------------------~~  165 (319)
                       ++...........        ..+...+.+++|+|||+.+++.+                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             4444322111000        00112357899999998777654                                 34


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCC-EEEEeCCCC
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGR-VITSFGSEG  239 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~-~~~~~~~~~  239 (319)
                      ..|.+||+.+..      ..... .   ...+...+..++++|+|+.+++...+     ..|++||.... ....+....
T Consensus       235 ~~l~~~d~~~~~------~~~~~-~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~  304 (706)
T 2z3z_A          235 VTVGIYHLATGK------TVYLQ-T---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET  304 (706)
T ss_dssp             EEEEEEETTTTE------EEECC-C---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             eEEEEEECCCCc------eEeec-c---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence            678889887532      11111 0   01223456789999999866654433     38999997543 444331110


Q ss_pred             CCcccccCcceEEEcC--CCcEEEEeCCCCEEEEEc--CCCceEEeecccCCCCCCCCCcce-EEEccCCc-EEEEeCCC
Q psy13998        240 SEEGQLKFPRGVAVDD--QGYISVGDSGNNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEG-VAVMSNGN-ILVCDREN  313 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~--~g~~~v~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~~g~-~~v~~~~~  313 (319)
                      . ......+..++|+|  +|++++++..++.+.+|.  .+++.+..+      ..+...+.. ++|+|||+ +++++..+
T Consensus       305 ~-~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l------~~~~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          305 D-KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV------TKGEWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             C-SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC------CCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred             C-CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec------CCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence            0 11111236789999  999888887777666665  567777766      334444555 79999997 55666655


Q ss_pred             C
Q psy13998        314 H  314 (319)
Q Consensus       314 ~  314 (319)
                      +
T Consensus       378 ~  378 (706)
T 2z3z_A          378 S  378 (706)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=1.7e-16  Score=136.76  Aligned_cols=222  Identities=9%  Similarity=0.067  Sum_probs=143.9

Q ss_pred             CCcceEEcCCCcEEEEeCC-CCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCC---CC--eEEEEcC
Q psy13998         57 WPRGIAVGPDNSIVVADSS-NHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSS---NH--RVQVFQS  126 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~---~~--~i~~~~~  126 (319)
                      .+++++++|||+.++..+. ++++.+    |++.++......    ..+..++|+|+ +++++...   +.  .++.++.
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~l----w~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNA----YLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEE----EEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             chheeecCCCCCeEEEEEccCCceeE----EEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            4788999999998777665 899999    877544333211    23467888988 66554432   34  4455555


Q ss_pred             --CCcEEEEecCCCccCCCCCCceeEEEeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        127 --DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                        ++... .+..       .......+++++|  .+|++...++ +.+||+++..      ......       ...  .
T Consensus        98 ~~~g~~~-~l~~-------~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~------~~~l~~-------~~~--~  153 (582)
T 3o4h_A           98 SRPGEEQ-RLEA-------VKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGG------LRELAR-------LPG--F  153 (582)
T ss_dssp             TSTTCCE-ECTT-------SCSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTE------EEEEEE-------ESS--C
T ss_pred             cCCCccc-cccC-------CCCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCc------EEEeec-------CCC--c
Confidence              55544 2221       1123355677766  4555555544 4589886532      111110       001  6


Q ss_pred             eEEEcCCCcEEEEeCCC----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC--EEEEEcCCC
Q psy13998        203 YIAVSNTNRVIVSDSNN----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN--RIQIFTPDG  276 (319)
Q Consensus       203 ~~~~~~~g~~~v~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~--~i~~~~~~g  276 (319)
                      .++++|+|+.++..+.+    ..|++||.++...+.+      ..+......++|+|||+.+++...++  .|++||.++
T Consensus       154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF------DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE------CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe------ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence            78999999888755544    6799999754444455      23334468899999999877777777  899999655


Q ss_pred             ceEEeecccCCCCCCCCCcceEE--------EccCCcEEEEeCCCCeEEeC
Q psy13998        277 QFLRAFGCWGSGDGEFKGLEGVA--------VMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~--------~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .....+      ..+...+.+++        |+|||.++++...++.+++|
T Consensus       228 ~~~~~~------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~  272 (582)
T 3o4h_A          228 GSVEDL------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF  272 (582)
T ss_dssp             CCEEEC------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred             CcEEEc------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEE
Confidence            443344      34444566667        99999999999999999887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.72  E-value=3.7e-15  Score=117.26  Aligned_cols=194  Identities=12%  Similarity=0.072  Sum_probs=136.3

Q ss_pred             CceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998         99 WPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus        99 ~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      .+.+..|+++ +.+|+++..+++|++|+.++.....+..       ...|.+++++++|++|++.  +..|.+||.++..
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM-------DAPVSSVALRQSGGYVATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC-------CCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence            5578899985 6799999999999999966554444422       2467899999999988876  5689999987532


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------CCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------NNHRVQIFDVNGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  246 (319)
                      +.    .+...  ..  ......++.++++++|++|++..           ..+.|+.++.++......       ....
T Consensus        85 ~~----~~~~~--~~--~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~  149 (297)
T 3g4e_A           85 AV----VLATV--DN--DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-------DQVD  149 (297)
T ss_dssp             EE----EEEEC--CT--TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-------EEES
T ss_pred             EE----EEEec--CC--CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-------eccc
Confidence            21    11111  00  11234578899999999998763           345788888877654432       3455


Q ss_pred             CcceEEEcCCCc-EEEEeCCCCEEEEEcC---CCceE--EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        247 FPRGVAVDDQGY-ISVGDSGNNRIQIFTP---DGQFL--RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       247 ~~~~i~~~~~g~-~~v~~~~~~~i~~~~~---~g~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .|.+++++|+++ +|+++..+++|.+|+.   +|...  +.+...   ......|.+++++++|++|++...+++|.+|
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~---~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~  225 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL---EKEEQIPDGMCIDAEGKLWVACYNGGRVIRL  225 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC---CGGGCEEEEEEEBTTSCEEEEEETTTEEEEE
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC---CCCCCCCCeeEECCCCCEEEEEcCCCEEEEE
Confidence            689999999985 8899998999999984   45432  111110   1223468999999999999999888877764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.72  E-value=1.9e-16  Score=137.99  Aligned_cols=216  Identities=19%  Similarity=0.164  Sum_probs=157.0

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc----ceeeE----EecCceeeEEcC-CCcEEEEcCCCCeEEEE
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT----NCVFL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVF  124 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~----~~~~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~  124 (319)
                      +..|.+|++++ ++.+|+++...+.|++    +++.+    .....    .+..|.+|++++ .+++|+++...++|.++
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~----~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~  480 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  480 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEE----EESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEE
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEE----EecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEE
Confidence            56899999998 5678999888899999    66643    11111    345789999995 56899999888999999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      +.++.....+.     ......|.+|+++| .+.+|++.... ++|.+++++|.       ....+.     ...+..|+
T Consensus       481 d~dg~~~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-------~~~~l~-----~~~l~~Pn  543 (699)
T 1n7d_A          481 DTKGVKRKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------DIYSLV-----TENIQWPN  543 (699)
T ss_dssp             BSSSCCEEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-------CCCEES-----CSSCSSCC
T ss_pred             ecCCCceEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-------CeeEEE-----eCCCCCcc
Confidence            98887665553     22346789999998 57889988654 78888887753       111111     12356799


Q ss_pred             eEEEcCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEE
Q psy13998        203 YIAVSNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLR  280 (319)
Q Consensus       203 ~~~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~  280 (319)
                      +|+++++ +++|+++...++|.+++.+|...+.+...   ...+..|.+|+++.+ ++|+++...++|.++++ +|+.+.
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC---SSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec---CCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            9999975 68999999999999999988665555321   234567899999875 89999999999999995 677777


Q ss_pred             eecccCCCCCCCCCcceEEEc
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~  301 (319)
                      .+.      .....|.+|++.
T Consensus       620 ~i~------~~~~~P~~i~v~  634 (699)
T 1n7d_A          620 LLA------ENLLSPEDMVLF  634 (699)
T ss_dssp             CCC------TTCSSCCCCCBC
T ss_pred             Eee------cCCCCCcEEEEe
Confidence            662      233446666554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.71  E-value=6.6e-16  Score=136.51  Aligned_cols=238  Identities=8%  Similarity=-0.011  Sum_probs=144.2

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-------CceeeEEcCCCcEEEEcCC---------CCe
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADSS---------NHR  120 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~~---------~~~  120 (319)
                      .+.+++|+|+|+++++ +.++.|++    |+..++.....+.       .+.+++|+|||+.+++...         ++.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~----~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRL----WNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEE----BCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEE----EECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            4788999999996655 67899999    8887765544333       2678999999987666543         268


Q ss_pred             EEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC-c-----
Q psy13998        121 VQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN-K-----  194 (319)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~-----  194 (319)
                      +++||..+.....+...   ..+...+..++|+|||+.++..+. +.|++|+..+..      .......... .     
T Consensus        93 i~~~d~~~~~~~~l~~~---~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~------~~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           93 YVLSKIPHGDPQSLDPP---EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ------AIRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             EEEEESSSCCCEECCCT---TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC------CEEEECCCBTTTEEEEE
T ss_pred             EEEEECCCCceEeccCC---ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc------eEEEecCCCCCceECcc
Confidence            89999544333333221   223334678999999977776654 789999987531      1111100000 0     


Q ss_pred             ------CCCCCCceeEEEcCCCcEEEEeCCC----------------------------------CeEEEEeCCCCE-EE
Q psy13998        195 ------AGQLEHPHYIAVSNTNRVIVSDSNN----------------------------------HRVQIFDVNGRV-IT  233 (319)
Q Consensus       195 ------~~~~~~~~~~~~~~~g~~~v~~~~~----------------------------------~~i~~~~~~~~~-~~  233 (319)
                            ........+++++|+|+.++....+                                  ..|++||..+.. ..
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~  242 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL  242 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred             cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence                  0011234689999999866554322                                  278888865433 34


Q ss_pred             EeCCCCCCcccccCcceEEEcCCCcEEEEeC----CCCEEEEEcC-CCceEEeecccCCCCCCCCC----cceEEEccCC
Q psy13998        234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDS----GNNRIQIFTP-DGQFLRAFGCWGSGDGEFKG----LEGVAVMSNG  304 (319)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~----~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~----~~~l~~~~~g  304 (319)
                      .+........+...+..++|+|||+++++..    .+..|++||. +|+.......     .+...    ...++|+|||
T Consensus       243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-----ESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-----ECSSCCCCCCCCCEECTTS
T ss_pred             EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-----ccCCEEeccCCCceEcCCC
Confidence            4421110011133467899999998775543    2357999995 4554443311     11111    2478999999


Q ss_pred             c-EEEE-eCCCC
Q psy13998        305 N-ILVC-DRENH  314 (319)
Q Consensus       305 ~-~~v~-~~~~~  314 (319)
                      + +++. ...++
T Consensus       318 ~~l~~~~~~~~~  329 (723)
T 1xfd_A          318 RKFFFIRAIPQG  329 (723)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CeEEEEEecccC
Confidence            8 4443 55555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=1.7e-15  Score=122.32  Aligned_cols=275  Identities=12%  Similarity=0.128  Sum_probs=162.9

Q ss_pred             hccchhhhhhhhhhcccccccCCCccchhccccce----------eeeecccCCCCC--------------cCCCCcceE
Q psy13998          7 AKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRL----------QFKIGSRGSEPG--------------CFTWPRGIA   62 (319)
Q Consensus         7 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~--------------~~~~~~~v~   62 (319)
                      ..|..+++++..+....--.++++|+++++.....          ...+..++....              +-..|.+++
T Consensus        35 v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~  114 (361)
T 2oiz_A           35 VYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFR  114 (361)
T ss_dssp             EEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEE
T ss_pred             EEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEE
Confidence            33445555554444221127789999987665432          223333332211              124689999


Q ss_pred             EcCCCcEEE-EeCC-CCeEEEeccccccccceeeEE-ecCc--eeeEEcCCC-cEEEEcCCCCeEEEEc--CCCcEEEEe
Q psy13998         63 VGPDNSIVV-ADSS-NHRVQVCFPHFDLKTNCVFLA-FTWP--RGIAVGPDN-SIVVADSSNHRVQVFQ--SDGTFVGKF  134 (319)
Q Consensus        63 ~~~~g~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~--~~l~~~~~g-~~~~~~~~~~~i~~~~--~~~~~~~~~  134 (319)
                      ++|+|++++ +... +++|.+    ||..+.+.... +..+  .++.+.|++ ..+++.+.++++..++  .+++.....
T Consensus       115 ~spdg~~l~v~n~~~~~~v~v----~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~  190 (361)
T 2oiz_A          115 QTTDGKFIVLQNASPATSIGI----VDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS  190 (361)
T ss_dssp             ECTTSSEEEEEEESSSEEEEE----EETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred             ECCCCCEEEEECCCCCCeEEE----EECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence            999998554 4433 689999    99988877666 5433  336677776 5777777788888887  346654222


Q ss_pred             cCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC----CcCCCCCCceeEEEcCCC
Q psy13998        135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG----NKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g  210 (319)
                      ..... ......+..+...+++..++....++.+.++|..+...    .....+....    ........+..+++++++
T Consensus       191 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg  265 (361)
T 2oiz_A          191 RSKQM-FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV----KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS  265 (361)
T ss_dssp             ECCCC-SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC----EEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred             cccce-EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc----eecccccccCccccccccccCCeeEEEEecCC
Confidence            10000 00011223333345554444444678899998764211    1111111000    000001122348899985


Q ss_pred             -cEEEEeC----------CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCC-
Q psy13998        211 -RVIVSDS----------NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDG-  276 (319)
Q Consensus       211 -~~~v~~~----------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g-  276 (319)
                       ++|++..          ..+.|.+||. +++.+..+      ..+.  |.+++++|+|+++++... +.|.+|| .++ 
T Consensus       266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i------~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI------PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE------ECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE------ecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence             6666643          1358999996 56666666      3333  999999999986666665 9999999 567 


Q ss_pred             -ceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        277 -QFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       277 -~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                       +.+..+      ......|+.++++|+|+
T Consensus       337 l~~~~~i------~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          337 PKLLRTI------EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CEEEEEE------TTSCSSEEEEEECCCSC
T ss_pred             ceeeEEe------ccCCCCcEEEEecCCCC
Confidence             777776      34556799999999985

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.70  E-value=2.5e-14  Score=112.98  Aligned_cols=195  Identities=15%  Similarity=0.137  Sum_probs=136.1

Q ss_pred             cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--CEEEEEecCC
Q psy13998         98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--HRVQIFDVNG  175 (319)
Q Consensus        98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--~~i~~~~~~~  175 (319)
                      ..|.+++++++|++|+++..+++|.+|+.+++....+...       ..|.+++++++|++|+++...  ..|..++..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~-------~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE-------GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECS-------SEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCC-------CCceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence            5789999999999999998899999999888766554321       368999999999999988543  3577777543


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC--EEEEeCCC---CCCcccccCcce
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR--VITSFGSE---GSEEGQLKFPRG  250 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~  250 (319)
                            +++......     .....+.+++..+++.+|+++..++.|+++|..+.  .+......   ......+..|.+
T Consensus       105 ------g~~~~~~~~-----~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png  173 (306)
T 2p4o_A          105 ------GTVETLLTL-----PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  173 (306)
T ss_dssp             ------SCEEEEEEC-----TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             ------CeEEEEEeC-----CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence                  222211111     11244677887777788999988899999997643  12211100   011233456788


Q ss_pred             EEEcCCC-cEEEEeCCCCEEEEEcCCC--ce--EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        251 VAVDDQG-YISVGDSGNNRIQIFTPDG--QF--LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       251 i~~~~~g-~~~v~~~~~~~i~~~~~~g--~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |  ++++ .+|++....++|.+|+.++  +.  ...+       .....|.+|+++++|++|++...+++|.+|
T Consensus       174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-------~~~~~P~gi~vd~dG~l~va~~~~~~V~~~  238 (306)
T 2p4o_A          174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-------VEQTNIDDFAFDVEGNLYGATHIYNSVVRI  238 (306)
T ss_dssp             E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-------EESCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-------eccCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence            7  6776 6999999999999999653  22  1111       112469999999999999999888888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=7.3e-15  Score=115.22  Aligned_cols=205  Identities=11%  Similarity=0.069  Sum_probs=132.2

Q ss_pred             eCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCc
Q psy13998         73 DSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHP  147 (319)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~  147 (319)
                      ++.++.|++    |+..+.....   +...+.+++++|+|++++++. ++.|++|+..  ++......     ......+
T Consensus        18 ~~~~~~i~~----~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~-----~~~~~~~   87 (297)
T 2ojh_A           18 GSMRSSIEI----FNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT-----GFATICN   87 (297)
T ss_dssp             CCCCEEEEE----EETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC-----TTCCCBC
T ss_pred             CCcceeEEE----EeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc-----ccccccc
Confidence            456789999    8876655433   233678999999999777765 7799999954  44443321     1112456


Q ss_pred             eeEEEeCCCeEEEEeC--C--CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE-EeCCCCeE
Q psy13998        148 HYIAVSNTNRVIVSDS--N--NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNNHRV  222 (319)
Q Consensus       148 ~~l~~~~~g~~~~~~~--~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~i  222 (319)
                      .+++++|+++.+++..  .  ...|..++..+.      . ...+.       ....+..++++|+++.++ +...++.+
T Consensus        88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~------~-~~~~~-------~~~~~~~~~~spdg~~l~~~~~~~~~~  153 (297)
T 2ojh_A           88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGG------T-PRLMT-------KNLPSYWHGWSPDGKSFTYCGIRDQVF  153 (297)
T ss_dssp             SCCEECTTSSEEEEEECTTTSSCEEEEEETTCC------C-CEECC-------SSSSEEEEEECTTSSEEEEEEEETTEE
T ss_pred             cceEECCCCCEEEEEEeCCCCcceEEEEECCCC------c-eEEee-------cCCCccceEECCCCCEEEEEECCCCce
Confidence            7899999998877766  2  345666665532      1 11111       112367789999997554 66667777


Q ss_pred             EEEe--CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-EeCCCCEEEEEc--CCCceEEeecccCCCCCCCCCcce
Q psy13998        223 QIFD--VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GDSGNNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       223 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      .+|+  ..+.....+      ..+...+..++++|+|+.++ ++..++.+.+|+  .++..+..+      ..+...+..
T Consensus       154 ~l~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~  221 (297)
T 2ojh_A          154 DIYSMDIDSGVETRL------THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI------TDSAYGDWF  221 (297)
T ss_dssp             EEEEEETTTCCEEEC------CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC------CCCSEEEEE
T ss_pred             EEEEEECCCCcceEc------ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE------ecCCcccCC
Confidence            7766  454444444      23344578899999997544 554566666665  456566655      344556788


Q ss_pred             EEEccCCcEEEEeCCC
Q psy13998        298 VAVMSNGNILVCDREN  313 (319)
Q Consensus       298 l~~~~~g~~~v~~~~~  313 (319)
                      ++|+|+|++++..+.+
T Consensus       222 ~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          222 PHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             EEECTTSSEEEEEEEE
T ss_pred             eEECCCCCEEEEEEcC
Confidence            9999999966655543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=7.7e-15  Score=118.96  Aligned_cols=243  Identities=13%  Similarity=0.126  Sum_probs=144.6

Q ss_pred             cccccCCCccchhccccceeeeecccCCC-CCcC---------CCCcceEEcCCCcE--EEEeC-------------CCC
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQFKIGSRGSE-PGCF---------TWPRGIAVGPDNSI--VVADS-------------SNH   77 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---------~~~~~v~~~~~g~~--~~~~~-------------~~~   77 (319)
                      .+..++++|+++++...... .+..|... .+.+         ..|.+++++|+|+.  ++++.             .++
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            46678899999876554332 33222211 1111         24788999999994  33443             578


Q ss_pred             eEEEeccccccccce-ee---EE-----ecCceeeEEcCCCc-EEEEcCCCCeEEEEcC--CCcEEE--EecCCCccCCC
Q psy13998         78 RVQVCFPHFDLKTNC-VF---LA-----FTWPRGIAVGPDNS-IVVADSSNHRVQVFQS--DGTFVG--KFGSMGNKAGQ  143 (319)
Q Consensus        78 ~v~~~~~~~~~~~~~-~~---~~-----~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~--~~~~~~--~~~~~~~~~~~  143 (319)
                      .+.+    |++...+ ..   ..     ...+.+++++|+|+ +|+++..++.|.+|+.  +|+...  .+..    ..+
T Consensus       120 ~v~v----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~~  191 (365)
T 1jof_A          120 YGNV----FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA----PDP  191 (365)
T ss_dssp             EEEE----EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC----SST
T ss_pred             eEEE----EccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEec----CCC
Confidence            8999    7775322 21   11     23688999999997 5566666789999994  465432  2211    112


Q ss_pred             CCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCcee---eeecccCC-cCCCCC------CceeEE-EcCCCc
Q psy13998        144 LEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFV---GKFGSMGN-KAGQLE------HPHYIA-VSNTNR  211 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~------~~~~~~-~~~~g~  211 (319)
                      ...|.+++++|+|+. |++...++.+.+|+.+..    .+++.   ........ ...+..      .+.+++ ++|+|+
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~----~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA----THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT----TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC----CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence            356899999999964 556666789999876421    11221   11111000 001111      478899 999997


Q ss_pred             E-EEEeCCCC-----eEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcC---CCcEEEEeC-CCCEEEEEcCCCceE
Q psy13998        212 V-IVSDSNNH-----RVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDD---QGYISVGDS-GNNRIQIFTPDGQFL  279 (319)
Q Consensus       212 ~-~v~~~~~~-----~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~g~~~v~~~-~~~~i~~~~~~g~~~  279 (319)
                      + |++....+     .|.+|+.  +++........   ......|.+++++|   +|+++++.. .++.|.+|+.+++.+
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~---~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l  344 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS---PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE---ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee---ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence            5 55554444     8999985  45543311000   11223578899999   787555554 569999999765544


Q ss_pred             Ee
Q psy13998        280 RA  281 (319)
Q Consensus       280 ~~  281 (319)
                      ..
T Consensus       345 ~~  346 (365)
T 1jof_A          345 HR  346 (365)
T ss_dssp             EE
T ss_pred             ce
Confidence            43

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.69  E-value=3e-15  Score=123.78  Aligned_cols=199  Identities=9%  Similarity=-0.042  Sum_probs=134.5

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc----------eeeE---------EecCceeeEEcCCCcEEE---
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN----------CVFL---------AFTWPRGIAVGPDNSIVV---  113 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~---------~~~~~~~l~~~~~g~~~~---  113 (319)
                      .....+++++++.++++++.++ +++    |+....          ....         .-..+.+++|+++|++++   
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQI----FPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEE----EEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEE----EEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEE
Confidence            4568899999888888877776 777    432110          0000         112478999999998877   


Q ss_pred             -EcCCCCeEEEEcC-CC--------cEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecC
Q psy13998        114 -ADSSNHRVQVFQS-DG--------TFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDG  182 (319)
Q Consensus       114 -~~~~~~~i~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~  182 (319)
                       +++.++.|++||. ++        +.+..+...   .+|...+.+++|+|+ ++++++++.++.|++||++..      
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~------  182 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL---KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET------  182 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC---CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS------
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeecc---CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC------
Confidence             7888999999993 22        111111111   345678899999997 789999999999999999753      


Q ss_pred             ceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCC-cccccCcceEEEcCCCcEEE
Q psy13998        183 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSE-EGQLKFPRGVAVDDQGYISV  261 (319)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~~~v  261 (319)
                      ......      ..+...+.+++++|+|+++++++.++.|++||.+++....+...... ..+...+.++++++++.+++
T Consensus       183 ~~~~~~------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          183 VKVCAT------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             EEEEEE------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             cceeec------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence            111111      12345678999999999999999999999999887666655322110 11223578899998876654


Q ss_pred             Ee-CCC------CEEEEEcC
Q psy13998        262 GD-SGN------NRIQIFTP  274 (319)
Q Consensus       262 ~~-~~~------~~i~~~~~  274 (319)
                      +. ..+      ..+++|+.
T Consensus       257 ~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          257 VYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EEEETTCCSSSCCEEEEEEC
T ss_pred             EEccCCCccCCCCceEEEEe
Confidence            32 223      24888884

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.69  E-value=5.1e-15  Score=135.76  Aligned_cols=219  Identities=12%  Similarity=0.090  Sum_probs=150.3

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---------------CceeeEEc-CCCcEEEEcCCCCe
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------------WPRGIAVG-PDNSIVVADSSNHR  120 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~-~~g~~~~~~~~~~~  120 (319)
                      .+..++|+|+|+.++.. .++.|.+    |+..+... ..+.               .+..++|+ |+|+.++... ++.
T Consensus       246 ~~~~~~~SpDG~~la~~-~~~~i~~----~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~  318 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-KGGSIYI----FNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ  318 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEE----ECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred             CcceeeEcCCCCEEEEE-eCCEEEE----ecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence            35577999999976665 4789999    77643322 2222               46889999 9998555544 678


Q ss_pred             EEEEcCCCcEEEEecCCCccCCCCC-CceeEEEeCCCeEEEEeCCCCEEE-EEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        121 VQVFQSDGTFVGKFGSMGNKAGQLE-HPHYIAVSNTNRVIVSDSNNHRVQ-IFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      +++|+..+.....+      ..+.. .+..++|+ +|+.++..+.+..+. +|+..+..      . ..+      ..+.
T Consensus       319 i~~~~~~~~~~~~~------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~-~~l------~~~~  378 (1045)
T 1k32_A          319 AFIQDVSGTYVLKV------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------A-EKF------EENL  378 (1045)
T ss_dssp             EEEECTTSSBEEEC------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------E-EEC------CCCC
T ss_pred             EEEEcCCCCceEEc------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------c-eEe------cCCc
Confidence            99999554433333      22233 56788899 887777666677888 88887531      1 111      1223


Q ss_pred             CCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC----------C
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN----------N  267 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~----------~  267 (319)
                      ..+..++++|+|+.+++...++.|++||.. ++.....      ..+...+.+++|+|||++++..+.+          +
T Consensus       379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~  452 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  452 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec------cCCCCCccceEECCCCCeEEEEecCccccccCCCCC
Confidence            456789999999988888888999999975 4444443      2344456889999999877665543          4


Q ss_pred             EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       268 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      .|++|+..+..+..+      ..+...+..++|+|||+.++..+.++
T Consensus       453 ~i~l~d~~~g~~~~l------~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          453 AIHVYDMEGRKIFAA------TTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             EEEEEETTTTEEEEC------SCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             eEEEEECCCCcEEEe------eCCCcccCCceEcCCCCEEEEEeccc
Confidence            899999765445555      45566678899999999665555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.68  E-value=1.4e-14  Score=116.18  Aligned_cols=245  Identities=16%  Similarity=0.166  Sum_probs=145.8

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE-------ecCceeeEEcCC----CcEEEEcCCC-----
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------FTWPRGIAVGPD----NSIVVADSSN-----  118 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~----g~~~~~~~~~-----  118 (319)
                      +..|++|+++|+|++|++... ++|.+    ++-.+...+..       ...|.+|+++|+    +.+|++....     
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~-g~I~~----i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERP-GRIRL----FREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETT-TEEEE----EETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEEEeCC-CeEEE----EECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            678999999999999999875 89988    65211111111       247899999997    6788887643     


Q ss_pred             CeEEEEcCCCc-E--EEE-ecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEEEEecCCceeeec
Q psy13998        119 HRVQVFQSDGT-F--VGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVFQSD  181 (319)
Q Consensus       119 ~~i~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~~~~~~~~~~~~~  181 (319)
                      .+|..++.++. .  ... +..........+.+..++++++|.+|++.+.             .++|..++.++.....+
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            67889985432 1  111 1100000122356789999999999998642             25788887776321100


Q ss_pred             Cceeeeeccc-CCcCCCCCCceeEEEcC-CCcEEEEeCCCCe--------EEEEeCCCCEEE--EeC---CCCCC-----
Q psy13998        182 GTFVGKFGSM-GNKAGQLEHPHYIAVSN-TNRVIVSDSNNHR--------VQIFDVNGRVIT--SFG---SEGSE-----  241 (319)
Q Consensus       182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~--------i~~~~~~~~~~~--~~~---~~~~~-----  241 (319)
                       .+...-... .........|.++++++ +|++|+++...+.        |.+....+..=.  ...   .....     
T Consensus       185 -pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          185 -PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             -TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             -cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence             000000000 00011235689999999 7899999876654        444432210000  000   00000     


Q ss_pred             cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--Cce-----EEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQF-----LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~-----~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      ......|.++++ .+|.+|++....++|..++.+  +..     ...+      ......|.+++++|||.+|+++..
T Consensus       264 ~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~------~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          264 WPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA------LSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             CTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE------EESSCCEEEEEECTTSCEEEEECS
T ss_pred             cCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee------cccCCCeeEEEECCCCcEEEEEeC
Confidence            011235788999 578999999999999999854  321     1112      112457999999999999988754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.68  E-value=1.2e-14  Score=114.86  Aligned_cols=195  Identities=19%  Similarity=0.273  Sum_probs=133.5

Q ss_pred             ecCceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998         97 FTWPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus        97 ~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      +..+.+.+++++|+ +|+++..++.|.+|+.+++. ..+.      .....+.+++++++|++|++...++.|.+|+.++
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~------~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g  116 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLL------DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG  116 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEE------ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEe------CCCCccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence            34667899999987 88899889999999987764 3332      1224679999999999999988888999999875


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------------CCCeEEEEeCC-CCEEEEeCC
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVN-GRVITSFGS  237 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------------~~~~i~~~~~~-~~~~~~~~~  237 (319)
                      ....    +.....     ......|..++++++|++|+++.                 ..+.|++++++ ++.. .+  
T Consensus       117 ~~~~----~~~~~~-----~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~--  184 (305)
T 3dr2_A          117 QAHL----LVGRYA-----GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RM--  184 (305)
T ss_dssp             CEEE----EECEET-----TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EE--
T ss_pred             CEEE----EEeccC-----CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-EE--
Confidence            3211    111110     11235678899999999999852                 13679999974 4433 33  


Q ss_pred             CCCCcccccCcceEEEcCCCc-EEEEeCC-----CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        238 EGSEEGQLKFPRGVAVDDQGY-ISVGDSG-----NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       238 ~~~~~~~~~~~~~i~~~~~g~-~~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                          . ....|.+++++|+|+ +|+++..     .+.|++|+.++..+.......  ......|.+++++++|++|++. 
T Consensus       185 ----~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~--~~~~~~pdgi~~d~~G~lwv~~-  256 (305)
T 3dr2_A          185 ----A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA--SVPDGLPDGFCVDRGGWLWSSS-  256 (305)
T ss_dssp             ----E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE--CCSSSCCCSEEECTTSCEEECC-
T ss_pred             ----e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE--ECCCCCCCeEEECCCCCEEEec-
Confidence                2 345688999999996 7888776     379999995432222111000  1123468899999999988887 


Q ss_pred             CCCeEEeC
Q psy13998        312 ENHRIQVF  319 (319)
Q Consensus       312 ~~~~i~v~  319 (319)
                      .+ .|.+|
T Consensus       257 ~~-gv~~~  263 (305)
T 3dr2_A          257 GT-GVCVF  263 (305)
T ss_dssp             SS-EEEEE
T ss_pred             CC-cEEEE
Confidence            33 35553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=2.2e-15  Score=121.01  Aligned_cols=208  Identities=12%  Similarity=0.108  Sum_probs=141.3

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCC-----CCeEEEeccccccccceeeEEec----------CceeeEEcCC-CcEEEEcC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSS-----NHRVQVCFPHFDLKTNCVFLAFT----------WPRGIAVGPD-NSIVVADS  116 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~-g~~~~~~~  116 (319)
                      +++..|.+|+++++|++|+++..     .++|.+    |++.++.....+.          .+.+++++++ +.+|+++.
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~----~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~  139 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA----WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP  139 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE----EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE----EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence            56789999999999999999876     578999    8887666444332          3589999975 67899988


Q ss_pred             ---CCCeEEEEcC-CCcEEEEecCC-Cc-c-------CC--------------CCCCceeEEEeCCC-eEEEEeCCCCEE
Q psy13998        117 ---SNHRVQVFQS-DGTFVGKFGSM-GN-K-------AG--------------QLEHPHYIAVSNTN-RVIVSDSNNHRV  168 (319)
Q Consensus       117 ---~~~~i~~~~~-~~~~~~~~~~~-~~-~-------~~--------------~~~~~~~l~~~~~g-~~~~~~~~~~~i  168 (319)
                         .++.|.+||. +++....+... .. .       .+              ....+.+|+++++| .+|++......+
T Consensus       140 ~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          140 APDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             CSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred             ccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence               7889999995 56655544210 00 0       00              01346899999998 477777777788


Q ss_pred             EEEecCCcee--eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccc
Q psy13998        169 QIFDVNGRVF--QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQL  245 (319)
Q Consensus       169 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~  245 (319)
                      ..++.....-  ...++....+..    ..+...|.+++++++|++|++...++.|.+|++ +|+......     ....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-----~~~~  290 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIER----YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-----DEKL  290 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEE----EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-----CGGG
T ss_pred             EEEEHHHhcCCCCChhhhhcceEe----cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-----CCce
Confidence            7776421000  000000000000    112236889999999999999999999999998 776443331     1236


Q ss_pred             cCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      ..|.+++++++|++|+++...+++.+|.
T Consensus       291 ~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          291 SWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ecCCeeEECCCCcEEEEeCccccccccc
Confidence            6799999999999999988766555554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.68  E-value=2.9e-16  Score=135.26  Aligned_cols=252  Identities=10%  Similarity=0.017  Sum_probs=156.3

Q ss_pred             cccccccCCCccchhccccce-eeeecccCCCCC-------c-CCCCcceEEcCCCcEEEEeCC---CCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRL-QFKIGSRGSEPG-------C-FTWPRGIAVGPDNSIVVADSS---NHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-------~-~~~~~~v~~~~~g~~~~~~~~---~~~v~~~~~~~~~   88 (319)
                      ...|..++++|+++.++..+. +.++.+|....+       + ...+..++|+|+ +++++...   +....+|.  ++.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~--~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK--VNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE--EET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE--Eec
Confidence            556889999999998887654 444444432111       1 245778899998 76665443   44444511  333


Q ss_pred             --cccee-eEEecCceeeEEcCCCc--EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC
Q psy13998         89 --KTNCV-FLAFTWPRGIAVGPDNS--IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS  163 (319)
Q Consensus        89 --~~~~~-~~~~~~~~~l~~~~~g~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~  163 (319)
                        ..... +.........+++++|+  ++++... +.+.+||.++.....+..     .. .  .+++++|||+.+++.+
T Consensus        98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~-----~~-~--~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELAR-----LP-G--FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             TSTTCCEECTTSCSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEE-----ES-S--CEEEEEEETTEEEEEE
T ss_pred             cCCCccccccCCCCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeec-----CC-C--ceEEECCCCCEEEEEE
Confidence              21211 11222344567777764  4554444 455699954433333321     11 1  7889999999888655


Q ss_pred             CC----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC--eEEEEeCCCCEEEEeCC
Q psy13998        164 NN----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVITSFGS  237 (319)
Q Consensus       164 ~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~i~~~~~~~~~~~~~~~  237 (319)
                      .+    ..|++||+.+.      +.. .+      ..+......++++|||+.+++...++  .|++||.++.....+  
T Consensus       169 ~~~~~~~~i~~~d~~~g------~~~-~l------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~--  233 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSG------GLR-VF------DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDL--  233 (582)
T ss_dssp             EEETTEEEEEEEETTTC------CCE-EE------CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEEC--
T ss_pred             EcCCCCeEEEEEcCCCC------Cce-Ee------ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEc--
Confidence            44    67999998753      221 22      12233457799999998877766677  899999765444433  


Q ss_pred             CCCCcccccCcceEE--------EcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        238 EGSEEGQLKFPRGVA--------VDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       238 ~~~~~~~~~~~~~i~--------~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                          ..+...+.+++        |+|||.++++...++++.+|+. |+.+...         ...+.+++++ +|+++++
T Consensus       234 ----~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~---------~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          234 ----ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVEAP---------QGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             ----CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEECCC---------SSEEEEEEEE-TTEEEEE
T ss_pred             ----cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccC---------CCceEEEEec-CCEEEEE
Confidence                22222234445        9999999999999999999999 7655422         1357789999 8887777


Q ss_pred             eCCCC
Q psy13998        310 DRENH  314 (319)
Q Consensus       310 ~~~~~  314 (319)
                      .+.+.
T Consensus       299 ~s~~~  303 (582)
T 3o4h_A          299 HTSLS  303 (582)
T ss_dssp             EEETT
T ss_pred             EcCCC
Confidence            65543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.68  E-value=7.9e-16  Score=134.07  Aligned_cols=213  Identities=18%  Similarity=0.142  Sum_probs=151.5

Q ss_pred             CCeEEEeccccccccceeeE---EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCc----EEEEecCCCccCCCCCCc
Q psy13998         76 NHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGT----FVGKFGSMGNKAGQLEHP  147 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~  147 (319)
                      .+.|++    +++.+.....   .+..|.+|++++. +.+|+++...++|++++.++.    ....+.     ......|
T Consensus       385 ~~~I~~----id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-----~~~~~~P  455 (699)
T 1n7d_A          385 RHEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDIQAP  455 (699)
T ss_dssp             TTC-CE----ECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-----CSCC--C
T ss_pred             ccceEE----EeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-----eCCCCCc
Confidence            356777    6665433322   4557899999975 579999988899999997652    111111     1234568


Q ss_pred             eeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCC-CeEEE
Q psy13998        148 HYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQI  224 (319)
Q Consensus       148 ~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~-~~i~~  224 (319)
                      .+|++++ .+++|+++...+.|.++++++..       ...+.     ...+..|.+|+++| .+.+|+++... +.|++
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-------~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~  523 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  523 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCC-------EEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEB
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCc-------eEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEE
Confidence            8999995 67999999888999999987642       22221     12345689999998 46889988765 79999


Q ss_pred             EeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        225 FDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      ++++|.....+.     ...+..|.+|+++++ +++|++....++|.+++.+|...+.+...   ......|.+|+++.+
T Consensus       524 ~~~dG~~~~~l~-----~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~~~~P~glavd~~  595 (699)
T 1n7d_A          524 GGLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFED  595 (699)
T ss_dssp             CCSSSCCCCEES-----CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC---SSSCSSCCCCEEETT
T ss_pred             EeCCCCCeeEEE-----eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec---CCcCCCceEeEEECC
Confidence            998886554442     234668999999986 68999999999999999888665555321   234567899999865


Q ss_pred             CcEEEEeCCCCeEEe
Q psy13998        304 GNILVCDRENHRIQV  318 (319)
Q Consensus       304 g~~~v~~~~~~~i~v  318 (319)
                       .+|+++...++|..
T Consensus       596 -~lywtd~~~~~V~~  609 (699)
T 1n7d_A          596 -KVFWTDIINEAIFS  609 (699)
T ss_dssp             -EEEEECSTTTCEEE
T ss_pred             -EEEEEeCCCCeEEE
Confidence             79999988888865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=6.7e-15  Score=120.33  Aligned_cols=271  Identities=10%  Similarity=-0.007  Sum_probs=150.4

Q ss_pred             cCCCccchhccccce-ee--eecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE
Q psy13998         27 VGTTPRSQYLQKRRL-QF--KIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL   95 (319)
Q Consensus        27 ~~~~~~~~~l~~~~~-~~--~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~   95 (319)
                      .+|||++++++.... ..  .+..++...        ++...+.+++|+|+|+.++..+.++.|++    |++.+.+...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~----~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR----VDLATLEENV  116 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE----EETTTCCEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE----EECCCCccee
Confidence            789999998765543 22  122222222        22233347899999998887777889999    8887665443


Q ss_pred             EecCc------eeeEEcCCCcEEEE----------------------cCCCCeEEEEcC-CCcEEEEecCCCccCCCCCC
Q psy13998         96 AFTWP------RGIAVGPDNSIVVA----------------------DSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEH  146 (319)
Q Consensus        96 ~~~~~------~~l~~~~~g~~~~~----------------------~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~  146 (319)
                      ....+      ....+++++++++.                      ...+..|++||. +++......       +...
T Consensus       117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-------~~~~  189 (388)
T 3pe7_A          117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-------ENQW  189 (388)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-------ESSC
T ss_pred             eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-------CCcc
Confidence            22222      11234788887663                      223468999994 454433221       2234


Q ss_pred             ceeEEEeC-CCeEEEEeCC------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeC-
Q psy13998        147 PHYIAVSN-TNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDS-  217 (319)
Q Consensus       147 ~~~l~~~~-~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~-  217 (319)
                      +..++++| +|+.++....      ...|.+++.++..       ...+..    ..........+++|+|+ ++++.. 
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~l~~----~~~~~~~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------MRKVKT----HAEGESCTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------CEESCC----CCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------eEEeee----CCCCcccccceECCCCCEEEEEecC
Confidence            57899999 9876554332      3478888876531       111110    00001244578999996 433332 


Q ss_pred             CC---CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEe---------CCCCEEEEEcCCCceEEeeccc
Q psy13998        218 NN---HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGD---------SGNNRIQIFTPDGQFLRAFGCW  285 (319)
Q Consensus       218 ~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~---------~~~~~i~~~~~~g~~~~~~~~~  285 (319)
                      ..   ..|++||..+.....+............+.+++|+|+|+.++..         ..+..|++|+.++..+..+...
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (388)
T 3pe7_A          259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH  338 (388)
T ss_dssp             TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence            22   24999997543332221100000011124556899998644432         4567999999776555555221


Q ss_pred             CCC-----CCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        286 GSG-----DGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       286 ~~~-----~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ...     ......+..++|+|||+ ++++...++...+|
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            100     00011467789999998 55566566666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.67  E-value=1.3e-13  Score=110.47  Aligned_cols=238  Identities=15%  Similarity=0.174  Sum_probs=148.3

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE-------ecCceeeEEcCC----CcEEEEcCC---C--
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------FTWPRGIAVGPD----NSIVVADSS---N--  118 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~----g~~~~~~~~---~--  118 (319)
                      +..|++|+++|+|++|++... ++|++    ++......+..       ...+.+|+++|+    +.+|++...   +  
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~-g~I~~----~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERP-GRLVL----ISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETT-TEEEE----ECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeEEEEeCC-CEEEE----EeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            788999999999999999876 89998    65321112221       236899999997    778887653   3  


Q ss_pred             --CeEEEEcCCCc---E--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEEEEecCCcee
Q psy13998        119 --HRVQVFQSDGT---F--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVF  178 (319)
Q Consensus       119 --~~i~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~~~~~~~~~~  178 (319)
                        .+|..|+.++.   .  ...+.. +......+.+..|++.|+|.+|++.+.             .++|..++.++...
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~-~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLID-GIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEE-EEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEE-cCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence              67888885432   1  111100 000122345788999999999998643             25788777766321


Q ss_pred             eec---CceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCe---EEEEeCCCCEE---EE--eCCCCCCc----
Q psy13998        179 QSD---GTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHR---VQIFDVNGRVI---TS--FGSEGSEE----  242 (319)
Q Consensus       179 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~---i~~~~~~~~~~---~~--~~~~~~~~----  242 (319)
                      ..+   ...+.        ...+..|.++++++ +|++|+++...+.   |.+....+..-   ..  ....+...    
T Consensus       182 ~~npf~~~~i~--------a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  253 (354)
T 3a9g_A          182 ADNPFPNSPIW--------SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID  253 (354)
T ss_dssp             TTSSSTTCCEE--------EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             CCCCCCCCcEE--------EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence            100   00011        11246789999999 7899999886543   44443221000   00  00000000    


Q ss_pred             --ccccCcceEEE-------cCCCcEEEEeCCCCEEEEEcCC--CceE--EeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        243 --GQLKFPRGVAV-------DDQGYISVGDSGNNRIQIFTPD--GQFL--RAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       243 --~~~~~~~~i~~-------~~~g~~~v~~~~~~~i~~~~~~--g~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                        .....|.++++       ..+|.+|++....++|..++.+  |+..  ..+.     ......|.++++.|||.+|++
T Consensus       254 ~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~~~rp~~v~~~pDG~lyv~  328 (354)
T 3a9g_A          254 TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----KNVFGRLRDVVIDDDGGILIS  328 (354)
T ss_dssp             CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----TTTSCCEEEEEECTTSCEEEE
T ss_pred             cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----cCCCCCeeEEEECCCCcEEEE
Confidence              11235889999       3578999999999999999965  3332  1221     123567999999999999998


Q ss_pred             eC
Q psy13998        310 DR  311 (319)
Q Consensus       310 ~~  311 (319)
                      +.
T Consensus       329 ~~  330 (354)
T 3a9g_A          329 TS  330 (354)
T ss_dssp             EC
T ss_pred             Ee
Confidence            85

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.66  E-value=2.5e-13  Score=103.03  Aligned_cols=197  Identities=11%  Similarity=0.070  Sum_probs=137.2

Q ss_pred             CceeeEEcCCCcEEEEcC--CCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998         99 WPRGIAVGPDNSIVVADS--SNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~--~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      .++++++++++.+|++.+  .++.|.++| .+++.+..+...     ....+.+++++ .+++|++...++.+.++|..+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-----~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-----DSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----TTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----CCcceEEEEEe-CCEEEEEEecCCEEEEEECCC
Confidence            468999999888999865  367999999 678888877532     12344567776 468999999999999999875


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEE
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                      .      +.+..+...        .+.+..++++| ++|+++ .++.|.++|+.. +.+..+..... ......++.+.+
T Consensus        96 ~------~v~~~i~~g--------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~  159 (266)
T 2iwa_A           96 L------SNIKNFTHQ--------MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEY  159 (266)
T ss_dssp             T------EEEEEEECC--------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEE
T ss_pred             C------cEEEEEECC--------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEE
Confidence            3      455554221        12234455555 678777 588999999754 55555532111 112335778888


Q ss_pred             cCCCcEEEEeCCCCEEEEEcC-CCceEEeecccC-------CCCCCCCCcceEEEccCCc-EEEEeCCCCeEEe
Q psy13998        254 DDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWG-------SGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQV  318 (319)
Q Consensus       254 ~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v  318 (319)
                      . +|++|+....++.|.+.|+ +|+.+..+...+       ........+++|+++|+++ +|+++...+.+.+
T Consensus       160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            7 7899999988999999995 788888774321       0011224679999999986 9999988777653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.66  E-value=1.2e-14  Score=133.32  Aligned_cols=233  Identities=14%  Similarity=0.085  Sum_probs=154.0

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-eeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-CVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT  129 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  129 (319)
                      |...+.++.|+++ .+++++..++.+.+    |..... +...   ........+++|+|+.++.. .++.|++|+..+.
T Consensus       202 ~~~~v~~~~~s~d-~l~~~~~~dg~~~l----~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~  275 (1045)
T 1k32_A          202 MSTHVSSPVIVGH-RIYFITDIDGFGQI----YSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTE  275 (1045)
T ss_dssp             CSSCCEEEEEETT-EEEEEECTTSSCEE----EEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred             CCCcccceEEeCC-EEEEEEeccCceEE----EEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence            3456677888877 77777777888888    544321 1112   22234567899999855554 4789999996555


Q ss_pred             EEEEecCCCccC-----CCCCCceeEEEe-CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC-Cce
Q psy13998        130 FVGKFGSMGNKA-----GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE-HPH  202 (319)
Q Consensus       130 ~~~~~~~~~~~~-----~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  202 (319)
                      .+..+.......     .+...+..++|+ |+|+.++... ++.+.+|+..+.      ... .+      ..+.. .+.
T Consensus       276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~------~~~-~~------~~~~~~~~~  341 (1045)
T 1k32_A          276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT------YVL-KV------PEPLRIRYV  341 (1045)
T ss_dssp             CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS------BEE-EC------SCCSCEEEE
T ss_pred             EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC------ceE-Ec------cCCCcceEE
Confidence            444442211000     012357899999 9998666554 688999988643      211 11      11222 456


Q ss_pred             eEEEcCCCcEEEEeCCCCeEE-EEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEE
Q psy13998        203 YIAVSNTNRVIVSDSNNHRVQ-IFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLR  280 (319)
Q Consensus       203 ~~~~~~~g~~~v~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~  280 (319)
                      .++++ +|+.++..+.+..++ +|+.++.....+      ..+...+..++++|+|+.+++.+.++.|++||. +|+...
T Consensus       342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~  414 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV  414 (1045)
T ss_dssp             EECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             eeeEc-CCCeEEEEECCCceEEEEECCCCCceEe------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE
Confidence            78888 887666555577888 999876655555      223346788999999998888888999999996 455554


Q ss_pred             eecccCCCCCCCCCcceEEEccCCcEEEEeCCC----------CeEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN----------HRIQVF  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~----------~~i~v~  319 (319)
                      ..      ..+...+.+++|+|||+++++.+.+          +.|++|
T Consensus       415 ~~------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          415 IE------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             EE------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             ec------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence            44      3455667899999999977665443          377776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=9.4e-14  Score=112.18  Aligned_cols=235  Identities=12%  Similarity=0.092  Sum_probs=138.8

Q ss_pred             CCcceEEcCCCcEEEEeC----------CCCeEEEeccccccccceeeEEe----------cCceeeEEcCCCcE-EEEc
Q psy13998         57 WPRGIAVGPDNSIVVADS----------SNHRVQVCFPHFDLKTNCVFLAF----------TWPRGIAVGPDNSI-VVAD  115 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~g~~-~~~~  115 (319)
                      .| .++++|+|+++++..          .++.|.+    ||..+.+....+          ..|..++++|+|+. |++.
T Consensus        52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v----~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n  126 (361)
T 2oiz_A           52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEV----WDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN  126 (361)
T ss_dssp             EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEE----EETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred             CC-ceEECCCCCEEEEEEecccccccCCCCCEEEE----EECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence            46 899999998544432          3567999    888766655433          35889999999974 5554


Q ss_pred             CC-CCeEEEEc-CCCcEEEE-ecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998        116 SS-NHRVQVFQ-SDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       116 ~~-~~~i~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                      .. ++.|.+|| .+++.+.. +...        ....+.+.|++ ..+++.+.++++..++.+.     +++........
T Consensus       127 ~~~~~~v~v~d~~~~~~~~~~i~~~--------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~-----~g~~~~~~~~~  193 (361)
T 2oiz_A          127 ASPATSIGIVDVAKGDYVEDVTAAA--------GCWSVIPQPNRPRSFMTICGDGGLLTINLGE-----DGKVASQSRSK  193 (361)
T ss_dssp             ESSSEEEEEEETTTTEEEEEEGGGT--------TEEEEEECTTSSSEEEEEETTSSEEEEEECT-----TSSEEEEEECC
T ss_pred             CCCCCeEEEEECCCCcEEEEEecCC--------CcceeEEcCCCCeeEEEECCCCcEEEEEECC-----CCcEeeecccc
Confidence            43 67999999 56666666 5321        12335566654 5677777778887777642     12222111000


Q ss_pred             CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE---EEEeCCCCC--Cc-c-cccCcceEEEcCCC-cEEEEe
Q psy13998        192 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV---ITSFGSEGS--EE-G-QLKFPRGVAVDDQG-YISVGD  263 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~---~~~~~~~~~--~~-~-~~~~~~~i~~~~~g-~~~v~~  263 (319)
                       ........|..+...+++..++....++.++++|..+..   ...+.....  .. . ....+..++++|++ ++|++.
T Consensus       194 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~  272 (361)
T 2oiz_A          194 -QMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM  272 (361)
T ss_dssp             -CCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred             -ceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence             000011123333445555444434457789999965322   122210000  00 0 01122348999995 577765


Q ss_pred             C----------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        264 S----------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       264 ~----------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .          ..+.|.+|| .+++.+..+      ..+.  |++|+++|||+++++... +.|.+|
T Consensus       273 ~~~~~~~~~~~~~~~v~viD~~t~~~v~~i------~~~~--p~~ia~spdg~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          273 HPDGKEGTHKFPAAEIWVMDTKTKQRVARI------PGRD--ALSMTIDQQRNLMLTLDG-GNVNVY  330 (361)
T ss_dssp             ESSCCTTCTTCCCSEEEEEETTTTEEEEEE------ECTT--CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred             ccCCCcccccCCCceEEEEECCCCcEEEEE------ecCC--eeEEEECCCCCEEEEeCC-CeEEEE
Confidence            4          145899999 467788777      3333  999999999995555555 888886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.64  E-value=9e-15  Score=120.97  Aligned_cols=199  Identities=12%  Similarity=-0.001  Sum_probs=129.8

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCC-----------cEEEEecCCCccCCCCCCceeEEEeCCCeEEE----EeC
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDG-----------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV----SDS  163 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~----~~~  163 (319)
                      ..+.+++++++.++++++.++ +.+|+...           ..+...... ....+...+.+++|+++|++++    +++
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            457889999888777776665 77765211           011111000 0011224579999999998888    788


Q ss_pred             CCCEEEEEecCCceee--ecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC
Q psy13998        164 NNHRVQIFDVNGRVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVN-GRVITSFGSEG  239 (319)
Q Consensus       164 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~  239 (319)
                      .++.|++||+......  ...+.+....   ....|...+.+++++|+ +.++++++.++.|++||.. +......    
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~----  188 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHK---LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT----  188 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEE---CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE----
T ss_pred             CCceEEEEEccccccCCcCCcceeeeee---ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec----
Confidence            8999999997632000  0000111110   11335567899999997 7899999999999999964 4333333    


Q ss_pred             CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCC-CCCCCCcceEEEccCCcEEE
Q psy13998        240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG-DGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~v  308 (319)
                        ..+...+.+++|+|+|+++++++.++.|++||..++....+...... ..+...+.+++|++++.+++
T Consensus       189 --~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          189 --LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             --ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             --cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence              34556789999999999999999999999999877766655322111 11233688999999877553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=6e-15  Score=130.29  Aligned_cols=276  Identities=12%  Similarity=0.030  Sum_probs=154.6

Q ss_pred             cccCCCccchhccccceeeeecccCCCCCcC-------C----CCcceEEcCCCcEEEEeCC---------CCeEEEecc
Q psy13998         25 GQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------T----WPRGIAVGPDNSIVVADSS---------NHRVQVCFP   84 (319)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~----~~~~v~~~~~g~~~~~~~~---------~~~v~~~~~   84 (319)
                      ..+.|+|++.++.... +..+..|+...+..       .    .+.+++|+|||+.++.++.         ++.|++   
T Consensus        19 ~~~~~s~dg~~~~~~~-d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~---   94 (719)
T 1z68_A           19 FFPNWISGQEYLHQSA-DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI---   94 (719)
T ss_dssp             CCCEESSSSEEEEECT-TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE---
T ss_pred             CccEECCCCeEEEEcC-CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE---
Confidence            3677899987665542 44555554443321       1    3789999999998776654         689999   


Q ss_pred             cccccccee---eEEecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccC----CC---------CCCc
Q psy13998         85 HFDLKTNCV---FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKA----GQ---------LEHP  147 (319)
Q Consensus        85 ~~~~~~~~~---~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~---------~~~~  147 (319)
                       |+..++..   ......+..++|+|||+.++... ++.|++|+. .++.. .+...+...    ++         ....
T Consensus        95 -~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           95 -YDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             -EETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             -EECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCeEcccccceeeeecccCc
Confidence             88876654   22224567899999998665553 679999995 44443 332221100    00         0122


Q ss_pred             eeEEEeCCCeEEEEeCCCC----------------------------------EEEEEecCCceeeecCceeeeecccCC
Q psy13998        148 HYIAVSNTNRVIVSDSNNH----------------------------------RVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       148 ~~l~~~~~g~~~~~~~~~~----------------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      .+++|+|||+.++..+.+.                                  .|.+||+.+....   . ...+.....
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~---~-~~~~~~~~~  247 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV---G-PQEVPVPAM  247 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH---C-CEECCCCHH
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc---c-eeEccCCcc
Confidence            5899999998777654321                                  6777777653110   0 000100000


Q ss_pred             cCCCCCCceeEEEcCCCcEEEEeC--CC--CeEEEEe----CCCCEEEEeCCCCCCcccccCcc-----eEEEcCCCc-E
Q psy13998        194 KAGQLEHPHYIAVSNTNRVIVSDS--NN--HRVQIFD----VNGRVITSFGSEGSEEGQLKFPR-----GVAVDDQGY-I  259 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~~~v~~~--~~--~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~g~-~  259 (319)
                      ...+......++++|+++++++..  ..  ..|++||    ..+.....+.. .....+...+.     .++|+|+|+ +
T Consensus       248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l  326 (719)
T 1z68_A          248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRTGWAGGFFVSTPVFSYDAISY  326 (719)
T ss_dssp             HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred             CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-cccccCCceEccccCCccEECCCCCeE
Confidence            012334457889999998776632  22  3588888    65432222210 00001111222     678999997 3


Q ss_pred             EE-EeCCC--CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCC----CCeEEeC
Q psy13998        260 SV-GDSGN--NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRE----NHRIQVF  319 (319)
Q Consensus       260 ~v-~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~----~~~i~v~  319 (319)
                      ++ +...+  ..|++|+.++.....+      ..+...+.++.+. +++ +++++..    ++.+++|
T Consensus       327 ~~~~~~~~g~~~l~~~~~~~~~~~~l------t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~  387 (719)
T 1z68_A          327 YKIFSDKDGYKHIHYIKDTVENAIQI------TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY  387 (719)
T ss_dssp             EEEEECTTSCEEEEEESSCSTTCEEC------SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred             EEEEEccCCceEEEEEECCCCceEec------ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence            33 44443  3788888655444444      2223345566666 655 5666554    4555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.62  E-value=3.1e-12  Score=96.48  Aligned_cols=213  Identities=13%  Similarity=0.121  Sum_probs=141.1

Q ss_pred             cCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998         98 TWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus        98 ~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      ..+.+++++|++ .+|++...++.|+.+|.+++.++.+...     ....+.+|++.+++.++++...++.+.++++...
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~-----g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD-----FVKDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS-----SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC-----CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            367999999875 5777666788999999889988887532     2356799999999998898888899999887542


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCC-eEEEEe--CCCCEEEEeCCCC-CCcccccCcceE
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH-RVQIFD--VNGRVITSFGSEG-SEEGQLKFPRGV  251 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~-~i~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~i  251 (319)
                      ...   ..+............-....+|++++.+ ++|++...+. .|+.|+  ..+..+....... ........+.++
T Consensus       102 ~~i---~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          102 SEV---KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CCE---EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             Cee---eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            100   1111111100001122345899999977 6777665544 677777  2222112111000 001123457899


Q ss_pred             EEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCC---CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        252 AVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGS---GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       252 ~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++|. +++|+....+..|.++|.+|+.+..+.....   .......|.+|+++++|++|+++-.| .+.+|
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f  249 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF  249 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence            99987 6899999999999999999998877754321   11234689999999999999986554 55543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.62  E-value=6.7e-13  Score=106.90  Aligned_cols=228  Identities=12%  Similarity=0.112  Sum_probs=146.0

Q ss_pred             CCCc-EEEEeCCCCeEEEeccccccccc----eeeEEe-----------cCceeeEEcCCCcEEEEcCCC------CeEE
Q psy13998         65 PDNS-IVVADSSNHRVQVCFPHFDLKTN----CVFLAF-----------TWPRGIAVGPDNSIVVADSSN------HRVQ  122 (319)
Q Consensus        65 ~~g~-~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~-----------~~~~~l~~~~~g~~~~~~~~~------~~i~  122 (319)
                      .+++ +++.+-.+++|.+    +|..+.    .....+           ..|+.+...|+| ++++...+      +.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~v----iD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYI----IDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEE----EECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred             ccCCEEEEccCCCCeEEE----EECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence            5666 6777888999999    887544    333322           378889999999 88876554      7899


Q ss_pred             EEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-------------------CCCEEEEEecCCceeeecC
Q psy13998        123 VFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------------------NNHRVQIFDVNGRVFQSDG  182 (319)
Q Consensus       123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-------------------~~~~i~~~~~~~~~~~~~~  182 (319)
                      ++| .+++.+.++....   ........+-++|+++.+++..                   ..++|.+||..+.      
T Consensus       168 vlD~~T~~v~~~~~~~~---~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~------  238 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDR---GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR------  238 (462)
T ss_dssp             EECTTTCCEEEECCSBC---TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT------
T ss_pred             EEECCCCeEEEEEccCC---CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC------
Confidence            999 5688888885432   1223345688899998777763                   3689999999853      


Q ss_pred             ceeeeecccCCcCCCCCCceeEEE--cCCCc-EEEEeC-----CCCeEEEEeCC-CCE--EEE--eCCCCC---Cc---c
Q psy13998        183 TFVGKFGSMGNKAGQLEHPHYIAV--SNTNR-VIVSDS-----NNHRVQIFDVN-GRV--ITS--FGSEGS---EE---G  243 (319)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~v~~~-----~~~~i~~~~~~-~~~--~~~--~~~~~~---~~---~  243 (319)
                      +.+..+...    .....|..+.+  +|+++ .|++..     .++.|.+|..+ |..  ...  +.....   ..   .
T Consensus       239 k~~~tI~vg----~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~  314 (462)
T 2ece_A          239 KRIHSLTLG----EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK  314 (462)
T ss_dssp             EEEEEEESC----TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred             cEeeEEecC----CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence            344433221    01234666666  89885 456665     67788876643 321  111  111000   00   0


Q ss_pred             ----cccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC----CceEEeecccCCC--------CCCCCCcceEEEccCCc-
Q psy13998        244 ----QLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD----GQFLRAFGCWGSG--------DGEFKGLEGVAVMSNGN-  305 (319)
Q Consensus       244 ----~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~--------~~~~~~~~~l~~~~~g~-  305 (319)
                          ....|.+|.+++||+ +|+++...+.|.+|+..    .+++..+...+..        ......|..++++|||+ 
T Consensus       315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          315 PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence                024588999999985 89999999999999942    2444444321110        01112599999999998 


Q ss_pred             EEEEe
Q psy13998        306 ILVCD  310 (319)
Q Consensus       306 ~~v~~  310 (319)
                      +|++.
T Consensus       395 LyVaN  399 (462)
T 2ece_A          395 VYVTN  399 (462)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            66666

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.60  E-value=1.4e-12  Score=98.96  Aligned_cols=197  Identities=10%  Similarity=0.064  Sum_probs=138.9

Q ss_pred             CCCcceEEcCCCcEEEEeCC--CCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEc-CC
Q psy13998         56 TWPRGIAVGPDNSIVVADSS--NHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SD  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~  127 (319)
                      ..+.+++++++|.+|++.+.  ++.|.+    +|..+++....+.     .+.+++++ .+++|++...++.+.++| .+
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~----iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQ----VALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEE----EETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEE----EECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCC
Confidence            35789999998899998753  679999    9998887776543     33567776 358999999999999999 56


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .+.+..+...        .+.+..+.++| .+|++. .++.+.++|..+.      +.+..+..... ......++.+.+
T Consensus        96 ~~v~~~i~~g--------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~------~v~~~I~Vg~~-~~p~~~~nele~  159 (266)
T 2iwa_A           96 LSNIKNFTHQ--------MKDGWGLATDGKILYGSD-GTSILYEIDPHTF------KLIKKHNVKYN-GHRVIRLNELEY  159 (266)
T ss_dssp             TEEEEEEECC--------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTC------CEEEEEECEET-TEECCCEEEEEE
T ss_pred             CcEEEEEECC--------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCC------cEEEEEEECCC-CcccccceeEEE
Confidence            7777777422        12233344454 677776 5889999998864      33333321110 112235778888


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC-------CcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS-------EEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP  274 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~  274 (319)
                      . +|++|+....++.|.++|+ +++.+..+...+.       .......|.+|+++|++ ++|+++...++|++++.
T Consensus       160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            7 7899999888899999996 6777777743210       00112367899999986 69999999999999984

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=2.8e-12  Score=108.96  Aligned_cols=230  Identities=13%  Similarity=0.131  Sum_probs=149.9

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccc--cceeeEEe---cCceeeEEc----CCCc-EEEEcCCCCeEEEEc
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK--TNCVFLAF---TWPRGIAVG----PDNS-IVVADSSNHRVQVFQ  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~---~~~~~l~~~----~~g~-~~~~~~~~~~i~~~~  125 (319)
                      ..|+++.++|+|+++++++.++.|.+    ||+.  +......+   ..|.+++++    |+|+ +|++....+.|.++|
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~v----iD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNM----IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEE----EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEE----EECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence            36789999999997666677899999    8874  55554444   368899999    6886 677777789999999


Q ss_pred             -CCCcEEEEecCCCccCC----C-CCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        126 -SDGTFVGKFGSMGNKAG----Q-LEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       126 -~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                       .+.+.+..+...+....    + ...+.++..++++ .+++.....++|.++|......    ..+..+       ...
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----~~v~~i-------~~~  341 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTEI-------SAE  341 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEEE-------ECC
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc----ceeeee-------ecc
Confidence             66777777654321111    1 1245677777765 5566677789999998764210    011111       112


Q ss_pred             CCceeEEEcCCCcEE-EEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCc-ceEE-EcCC-CcEEEEeC-CCCEEEEE
Q psy13998        199 EHPHYIAVSNTNRVI-VSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFP-RGVA-VDDQ-GYISVGDS-GNNRIQIF  272 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~-v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~-g~~~v~~~-~~~~i~~~  272 (319)
                      ..+.++.++++|+++ +++..++.|.++|.. ++.+..+...+    ....| .++. ++|+ +.+|++.. .++.|.++
T Consensus       342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg----~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvi  417 (567)
T 1qks_A          342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG----QTPHPGRGANFVHPTFGPVWATSHMGDDSVALI  417 (567)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC----cCCCCccceeeECCCCCcEEEeCCCCCCeEEEe
Confidence            457789999999754 566678899999964 55554442101    11122 3444 5787 56777764 56899999


Q ss_pred             cCC--------CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEe
Q psy13998        273 TPD--------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCD  310 (319)
Q Consensus       273 ~~~--------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~  310 (319)
                      +.+        .+.++.+.      .....+..|..+|+++ +|+..
T Consensus       418 d~~~~~~~~~~~kvv~~i~------~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          418 GTDPEGHPDNAWKILDSFP------ALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             ECCTTTCTTTBTSEEEEEE------CSCSCCCCEECCTTCSEEEEEC
T ss_pred             cCCCCCCccccCEEEEEEe------cCCCCCEEEEeCCCCCeEEEec
Confidence            954        35666663      2223345678899997 56655

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.59  E-value=1.3e-12  Score=104.06  Aligned_cols=193  Identities=9%  Similarity=0.065  Sum_probs=130.6

Q ss_pred             CceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998         99 WPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus        99 ~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      .+.+.+++++ +.+|+++..++.|.+|+.++.....+..       ...+.+++++++|++|++.  ...|.+|+..+. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g-  119 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-------PFMGSALAKISDSKQLIAS--DDGLFLRDTATG-  119 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-------SSCEEEEEEEETTEEEEEE--TTEEEEEETTTC-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-------CCcceEEEEeCCCeEEEEE--CCCEEEEECCCC-
Confidence            4567889987 5788888888999999976655544422       1357899999999998876  345899998643 


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV  251 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (319)
                           ++........  ......+..++++++|++|++...      .+.|++++ +++... +      ......+.++
T Consensus       120 -----~~~~~~~~~~--~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~------~~~~~~~~~i  184 (326)
T 2ghs_A          120 -----VLTLHAELES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTK-L------FADISIPNSI  184 (326)
T ss_dssp             -----CEEEEECSST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-E------EEEESSEEEE
T ss_pred             -----cEEEEeeCCC--CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-e------eCCCcccCCe
Confidence                 2211111000  011235788999999999987642      36788888 654432 2      1233457899


Q ss_pred             EEcCCCc-EEEEeCCCCEEEEEcC---CC-ceE--EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        252 AVDDQGY-ISVGDSGNNRIQIFTP---DG-QFL--RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       252 ~~~~~g~-~~v~~~~~~~i~~~~~---~g-~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++++|+ +|+++..++.|.+|+.   +| +..  +.+...   ......|.+++++++|++|++...++.|.+|
T Consensus       185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~---~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---TGIKGGMDGSVCDAEGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---TTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC---CCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence            9999985 7888888899999995   35 311  111100   1233468899999999999988766777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.59  E-value=1.2e-12  Score=106.52  Aligned_cols=236  Identities=13%  Similarity=0.134  Sum_probs=143.0

Q ss_pred             CCCc-EEEEeCCC----CeEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcC---------CCCeEEEEc-
Q psy13998         65 PDNS-IVVADSSN----HRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADS---------SNHRVQVFQ-  125 (319)
Q Consensus        65 ~~g~-~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~---------~~~~i~~~~-  125 (319)
                      ++++ +|+++..+    +.|.+    +|..+.+.+..+.   .| +++++|+|+ +|++..         .++.|.++| 
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsV----ID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFV----IDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEE----EETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEE----EECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            3554 78888765    79999    8988877776553   67 999999986 677753         356899999 


Q ss_pred             CCCcEEEEecCCCcc-CCCCCCceeEEEeCCCe-EEEEeCC-CCEEEEEecCCceeeecCceeeeeccc-----------
Q psy13998        126 SDGTFVGKFGSMGNK-AGQLEHPHYIAVSNTNR-VIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSM-----------  191 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~-~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------  191 (319)
                      .+++.+..+...+.. ......|..++++|+|+ +|++... ++.|.++|.......      ..+...           
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv------~~I~v~g~~~~~p~g~~  230 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD------RMLDVPDCYHIFPASPT  230 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE------EEEECCSEEEEEEEETT
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE------EEEEcCCceeeccCCCc
Confidence            677777776532110 11124689999999985 5566554 688999999864321      111100           


Q ss_pred             --------CC----------c-------CCCCCCc--eeEEEcCCCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCC----
Q psy13998        192 --------GN----------K-------AGQLEHP--HYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVITSFGSEG----  239 (319)
Q Consensus       192 --------~~----------~-------~~~~~~~--~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~----  239 (319)
                              +.          .       ......|  ..+.+.+++. ++++. ..+.++++|..+..+.......    
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~  309 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTE  309 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCT
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccc
Confidence                    00          0       0000011  1123455543 34433 3567888886543332221100    


Q ss_pred             CCcccccCcc---eEEEcCCC-cEEEEeC---------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        240 SEEGQLKFPR---GVAVDDQG-YISVGDS---------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       240 ~~~~~~~~~~---~i~~~~~g-~~~v~~~---------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      ........|.   .+++++++ ++|++..         ..+.|.++| .+.+.+..+..       ...|++|+++|||+
T Consensus       310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-------g~~P~gia~spDg~  382 (426)
T 3c75_H          310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-------GHEIDSINVSQDAE  382 (426)
T ss_dssp             TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------EEEECEEEECCSSS
T ss_pred             cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-------CCCcCeEEEccCCC
Confidence            0000111233   38999996 5787753         246899999 46788887731       23699999999997


Q ss_pred             --EEEEeCCCCeEEeC
Q psy13998        306 --ILVCDRENHRIQVF  319 (319)
Q Consensus       306 --~~v~~~~~~~i~v~  319 (319)
                        +|++...++.|.++
T Consensus       383 ~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          383 PLLYALSAGTQTLHIY  398 (426)
T ss_dssp             CEEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCeEEEE
Confidence              56666578888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=1.7e-12  Score=103.77  Aligned_cols=236  Identities=14%  Similarity=0.114  Sum_probs=141.0

Q ss_pred             CCCcceEEcCCCc-EEEEeC---------CCCeEEEeccccccccceeeEEec-----------CceeeEEcCCCc-EEE
Q psy13998         56 TWPRGIAVGPDNS-IVVADS---------SNHRVQVCFPHFDLKTNCVFLAFT-----------WPRGIAVGPDNS-IVV  113 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~g~-~~~  113 (319)
                      ..|. ++++|+|+ +|+++.         .++.|.+    ||..+......+.           .|..++++|||+ +|+
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv----iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV  153 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV----FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF  153 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE----ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEE----EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE
Confidence            3465 99999998 566653         3568999    8888877666442           588999999997 566


Q ss_pred             EcCC-CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998        114 ADSS-NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       114 ~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                      +... ++.|.++| .+++.+.++...+.         ...+....+.|++.+.|+++..+++...     ++....... 
T Consensus       154 an~~~~~~VsVID~~t~~vv~tI~v~g~---------~~~~P~g~~~~~~~~~DG~~~~v~~~~~-----g~v~~~~~~-  218 (386)
T 3sjl_D          154 YQFSPAPAVGVVDLEGKAFKRMLDVPDC---------YHIFPTAPDTFFMHCRDGSLAKVAFGTE-----GTPEITHTE-  218 (386)
T ss_dssp             EECSSSCEEEEEETTTTEEEEEEECCSE---------EEEEEEETTEEEEEETTSCEEEEECCSS-----SCCEEEECC-
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEECCCc---------ceeecCCCceeEEECCCCCEEEEECCCC-----CeEEEeecc-
Confidence            6653 68999999 67777877754321         1122223344555556666666665431     111110000 


Q ss_pred             CCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCC-CCc-----c-cccCcceEEEcCCC-cEEEE
Q psy13998        192 GNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG-SEE-----G-QLKFPRGVAVDDQG-YISVG  262 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-----~-~~~~~~~i~~~~~g-~~~v~  262 (319)
                      ..............++ ++|+++++.. ++.++++|..+.......... ...     + .......+++++++ ++|++
T Consensus       219 ~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~  297 (386)
T 3sjl_D          219 VFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL  297 (386)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             eeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence            0000000000113554 6887666544 689999998654322221100 000     0 01122347888886 57777


Q ss_pred             eC---------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEeC
Q psy13998        263 DS---------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF  319 (319)
Q Consensus       263 ~~---------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v~  319 (319)
                      ..         ..++|.++| .+++.++.+..       ...+++|++++|++  +|+++..++.|.++
T Consensus       298 ~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-------g~~~~~lavs~D~~~~ly~tn~~~~~VsVi  359 (386)
T 3sjl_D          298 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-------GHEIDSINVSQDEKPLLYALSTGDKTLYIH  359 (386)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------EEEECEEEECSSSSCEEEEEETTTTEEEEE
T ss_pred             eccccccccCCCCCEEEEEECCCCeEEEEEEC-------CCCcceEEECCCCCeEEEEEcCCCCeEEEE
Confidence            53         136899999 57888888732       23689999999986  67778888888764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=3.7e-12  Score=108.19  Aligned_cols=228  Identities=12%  Similarity=0.104  Sum_probs=150.1

Q ss_pred             cCCCcEEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcC---CCcEEEEecCC
Q psy13998         64 GPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQS---DGTFVGKFGSM  137 (319)
Q Consensus        64 ~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~---~~~~~~~~~~~  137 (319)
                      ++.+.++++...+++|.+    +|..+.+.+..+.   .|++++++|+|+.+++++.++.|.+||.   +++.+..+.. 
T Consensus       164 d~~~~~~V~~~~~~~V~v----iD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-  238 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIAL----IDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-  238 (567)
T ss_dssp             CGGGEEEEEETTTTEEEE----EETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred             CCCceEEEEeCCCCeEEE----EECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence            345568999999999999    9988877666543   6789999999986665667889999996   6677766632 


Q ss_pred             CccCCCCCCceeEEEe----CCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC-C---C-CCCceeEEEc
Q psy13998        138 GNKAGQLEHPHYIAVS----NTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA-G---Q-LEHPHYIAVS  207 (319)
Q Consensus       138 ~~~~~~~~~~~~l~~~----~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~~~~~~~  207 (319)
                            -..|.+++++    |+|+ +|+++...+.+.++|..+.      +.+..+...+... .   + ...+.++..+
T Consensus       239 ------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s  306 (567)
T 1qks_A          239 ------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILAS  306 (567)
T ss_dssp             ------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             ------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC------cEEEEEeccccccccccccCCCceEEEEEc
Confidence                  1357899999    6885 5667777899999997653      3443332211000 0   1 1245667777


Q ss_pred             CCC-cEEEEeCCCCeEEEEeCCCC-E--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCceEEe
Q psy13998        208 NTN-RVIVSDSNNHRVQIFDVNGR-V--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQFLRA  281 (319)
Q Consensus       208 ~~g-~~~v~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~~~~  281 (319)
                      +++ .+++.....+.|.++|.... .  +..+       .....+.++.|+|+|+ +|+++..+++|.++|. +++++..
T Consensus       307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~  379 (567)
T 1qks_A          307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  379 (567)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEecCCCccceeeee-------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence            776 45566667899999996432 2  2222       1123567899999997 5566778899999994 5666665


Q ss_pred             ecccCCCCCCCCCc-ceEE-EccC-CcEEEEeC-CCCeEEeC
Q psy13998        282 FGCWGSGDGEFKGL-EGVA-VMSN-GNILVCDR-ENHRIQVF  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~-~~l~-~~~~-g~~~v~~~-~~~~i~v~  319 (319)
                      +...    +....| .+.. ++|+ +.+|++.. .++.|.++
T Consensus       380 i~vg----g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvi  417 (567)
T 1qks_A          380 EDTG----GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI  417 (567)
T ss_dssp             EECS----SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             Eecc----CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEe
Confidence            5210    111112 3444 4777 45777654 45777663

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.58  E-value=1.9e-13  Score=105.66  Aligned_cols=210  Identities=13%  Similarity=0.078  Sum_probs=137.6

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-Eec----------CceeeEE---cCCCcEEEEcC---
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-AFT----------WPRGIAV---GPDNSIVVADS---  116 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~----------~~~~l~~---~~~g~~~~~~~---  116 (319)
                      .-.|.++.|++ ++.+|++.-..++|..    |+...+.... .+.          .+.+|.+   ++++++|++..   
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~----~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEV----YNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEE----ECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEE----EcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            45789999987 7789999989999999    6665332211 222          3579999   68888888522   


Q ss_pred             ----------CCCeEEEEcCC----CcEEEEecCCCccCC-------CCCCceeEEEeCCCeEEEEeCCC-CEEEEEecC
Q psy13998        117 ----------SNHRVQVFQSD----GTFVGKFGSMGNKAG-------QLEHPHYIAVSNTNRVIVSDSNN-HRVQIFDVN  174 (319)
Q Consensus       117 ----------~~~~i~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~-~~i~~~~~~  174 (319)
                                .+..+..||..    ++.+..........+       ....+++++++++|+.|++++.. +.|.+++.+
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      25779999955    776655543211111       12347899999999999999988 999999988


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC--CCCcccccCcceE-
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE--GSEEGQLKFPRGV-  251 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i-  251 (319)
                      |....       .+............+++|+++|+|+++++....+++..+|........+...  +. ...+..+.+| 
T Consensus       168 G~~~~-------~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~-~~~~~~~dgil  239 (334)
T 2p9w_A          168 GKTVS-------TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGD-FGTLSGTEKIV  239 (334)
T ss_dssp             SCCEE-------EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSC-CCCCTTEEEEE
T ss_pred             CCEEe-------eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCC-cccccCccccc
Confidence            75221       1111110122235688999999997666665599999999763211012111  11 1234566775 


Q ss_pred             EEcCCCcE-EEEeCCCCEEEEEcCCC
Q psy13998        252 AVDDQGYI-SVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       252 ~~~~~g~~-~v~~~~~~~i~~~~~~g  276 (319)
                      ....+|++ +|+...++.+.+.+.++
T Consensus       240 p~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          240 TVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEEEETTEEEEEECSST
T ss_pred             ccccCCEEEEEEcCCCCEEEEECCCC
Confidence            55557776 77777778888888776

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.58  E-value=2.8e-12  Score=96.72  Aligned_cols=215  Identities=15%  Similarity=0.126  Sum_probs=138.7

Q ss_pred             CCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEE
Q psy13998         51 EPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVF  124 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~  124 (319)
                      .+|-...+.+|+++|++ .+|+....++.|..    ++.. +..+..+     ..+.+|++.+++.++++...++.+.++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~----ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVE----MTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEE----EETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEE----EeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            34555679999999865 57776667889988    7775 4444433     367899999999888888888899998


Q ss_pred             c--CCCc--EEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCC-EEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        125 Q--SDGT--FVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH-RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       125 ~--~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                      +  .++.  .+......-..........+|++++.+ ++|++...+. .|+.|+  +......-+........  .....
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~--~~~~~  172 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQ--RQFTL  172 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHH--HTCCS
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhc--ccccc
Confidence            7  3343  223332111011223456899999976 6777655444 566665  21000000111000000  01123


Q ss_pred             CCceeEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC---CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        199 EHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS---EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       199 ~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                      ..+.+++++| .+++|+....++.+.++|.+|+.+..+.....   .......|.+|+++++|++|+++ ..+.+++|.+
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n~~y~f~~  251 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRFTP  251 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTTEEEEEEC
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCceEEEEEe
Confidence            4678999997 46899999999999999999997766643321   11234678999999999999995 4568998876


Q ss_pred             C
Q psy13998        275 D  275 (319)
Q Consensus       275 ~  275 (319)
                      .
T Consensus       252 ~  252 (255)
T 3qqz_A          252 Q  252 (255)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.58  E-value=9.7e-13  Score=105.22  Aligned_cols=271  Identities=11%  Similarity=0.082  Sum_probs=159.4

Q ss_pred             cchhhhhhhhhhcccccccCCCccchhccccce----------eeeecccCCCCCc---------------CCCCcceEE
Q psy13998          9 NINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRL----------QFKIGSRGSEPGC---------------FTWPRGIAV   63 (319)
Q Consensus         9 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~---------------~~~~~~v~~   63 (319)
                      |..+++++.+.....--.+.++|++.++.....          ...+..++.....               -..|..+++
T Consensus        65 D~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~  144 (386)
T 3sjl_D           65 DGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  144 (386)
T ss_dssp             ETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             ECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence            444555555555222224889999998655431          2233333333221               136899999


Q ss_pred             cCCCc-EEEEeCC-CCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcCCCCeEEEEcC--CCcEEEEecCCC
Q psy13998         64 GPDNS-IVVADSS-NHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQS--DGTFVGKFGSMG  138 (319)
Q Consensus        64 ~~~g~-~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~  138 (319)
                      +|||+ +|+++.. ++.|.+    +|..+.+....+.-+.+..+.|.+ +.|++.+.++++.+++.  .++........ 
T Consensus       145 spDGk~lyVan~~~~~~VsV----ID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~-  219 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGV----VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-  219 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEE----EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-
T ss_pred             cCCCCEEEEEEcCCCCeEEE----EECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce-
Confidence            99998 5666653 789999    999988887777654332233433 45556666777777763  24443221100 


Q ss_pred             ccCCCCCCceeEEEe-CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC----cCCCCCCceeEEEcCCC-cE
Q psy13998        139 NKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN----KAGQLEHPHYIAVSNTN-RV  212 (319)
Q Consensus       139 ~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g-~~  212 (319)
                      ............++. ++|++++.. .+++++++|..+....    +...+.....    ..........+++++++ ++
T Consensus       220 ~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~~~----v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          220 FHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAK----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCE----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCcce----eecceeccccccccccccCCCcceeeECCCCCeE
Confidence            000000111223554 688766644 3689999998754221    1111110000    00001122347778765 67


Q ss_pred             EEEeC---------CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc-CCCceE
Q psy13998        213 IVSDS---------NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT-PDGQFL  279 (319)
Q Consensus       213 ~v~~~---------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~-~~g~~~  279 (319)
                      |++..         ..+.|.++|. +++.+.++.      . ...+.+|++++|++  +|++...++.|.++| .+++.+
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------M-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------E-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCeEEEEEE------C-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            77643         1368999996 567777662      1 23578999999985  677788899999999 578999


Q ss_pred             EeecccCCCCCCCCCcceEEEccC
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      +++.       ....|+.|.+++|
T Consensus       368 ~~i~-------~~~~p~~l~~s~d  384 (386)
T 3sjl_D          368 RSVN-------QLGHGPQVITTAD  384 (386)
T ss_dssp             EEEC-------CCCSSCCEEEECC
T ss_pred             EEec-------CCCCCceeEECCc
Confidence            8883       3456888888877

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.56  E-value=1.3e-12  Score=104.92  Aligned_cols=216  Identities=13%  Similarity=0.118  Sum_probs=128.8

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC----CeEEEEeCCC-----C
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT----NRVIVSDSNN-----H  166 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~~~~-----~  166 (319)
                      .+..|.+|+++|+|++|++... ++|.+++ +++........ ........|.+|+++|+    +.+|++....     +
T Consensus        29 ~l~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~g~~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLIAERP-GRIRLFR-EGRLSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CCSCEEEEEECTTSCEEEEETT-TEEEEEE-TTEEEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEcCCCeEEEEeCC-CeEEEEE-CCCccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            3668999999999999999865 8999998 55532221111 11223467899999997    7889887643     6


Q ss_pred             EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCEEE
Q psy13998        167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVIT  233 (319)
Q Consensus       167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~~~~~~~  233 (319)
                      .|..++.++..+.....++..+...   ......+..|+++|+|.+|++...             .+.|.+++++|....
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~---~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPAR---PHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCC---TTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCC---CCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence            7888887643221111122222110   122345678999999999998642             268889988773210


Q ss_pred             EeCC---CCCC----cccccCcceEEEcC-CCcEEEEeCCCCE--------EEEEcCCCceE---Ee-------ecccCC
Q psy13998        234 SFGS---EGSE----EGQLKFPRGVAVDD-QGYISVGDSGNNR--------IQIFTPDGQFL---RA-------FGCWGS  287 (319)
Q Consensus       234 ~~~~---~~~~----~~~~~~~~~i~~~~-~g~~~v~~~~~~~--------i~~~~~~g~~~---~~-------~~~~~~  287 (319)
                      .-.-   .+..    ...+..|.+++++| +|++|+++...+.        |.+....+..-   ..       +..+..
T Consensus       183 ~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             TCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence            0000   0000    11234689999999 7899999887665        55554322100   00       000000


Q ss_pred             CCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      .-.....|.++++ .+|.+|+++...++|..
T Consensus       263 ~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~  292 (352)
T 2ism_A          263 FWPQGFPPGNLAF-FRGDLYVAGLRGQALLR  292 (352)
T ss_dssp             ECTTCCCEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred             ecCCCCCCcceEE-ECCEEEEEECCCCEEEE
Confidence            0012346788999 57899999988887754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=2.4e-11  Score=98.25  Aligned_cols=236  Identities=12%  Similarity=0.096  Sum_probs=128.8

Q ss_pred             cCCCc-EEEEeC-CCC---eEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcC---------CCCeEEEEc
Q psy13998         64 GPDNS-IVVADS-SNH---RVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADS---------SNHRVQVFQ  125 (319)
Q Consensus        64 ~~~g~-~~~~~~-~~~---~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~---------~~~~i~~~~  125 (319)
                      .++++ +|+++. ...   .|.+    +|..+.+....+.   .| +++++|+|+ +|++..         .++.|.+||
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v----~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWV----LDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEE----EECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            35666 566654 333   7888    8887776665443   56 999999996 566653         356899999


Q ss_pred             -CCCcEEEEecCCCc-cCCCCCCceeEEEeCCCeEEE-EeCC-CCEEEEEecCCceeeecCceeee-ecccCCcCCCCCC
Q psy13998        126 -SDGTFVGKFGSMGN-KAGQLEHPHYIAVSNTNRVIV-SDSN-NHRVQIFDVNGRVFQSDGTFVGK-FGSMGNKAGQLEH  200 (319)
Q Consensus       126 -~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~-~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  200 (319)
                       .+.+.+..+...+. .......|..++++|+|+.++ +... ++.|.++| .+.      +.+.. +...+........
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~------~~~~~~i~~~~~~~~~~~~  176 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG------SSDDQLLSSPTCYHIHPGA  176 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC------CEEeEEcCCCceEEEEeCC
Confidence             46677766643311 011124678999999997555 4443 58899999 754      33333 2111000000000


Q ss_pred             -ceeEEEcCCC--------------------------------------cEEEEeCCCCeEEEEeCCCCE---EEEeCCC
Q psy13998        201 -PHYIAVSNTN--------------------------------------RVIVSDSNNHRVQIFDVNGRV---ITSFGSE  238 (319)
Q Consensus       201 -~~~~~~~~~g--------------------------------------~~~v~~~~~~~i~~~~~~~~~---~~~~~~~  238 (319)
                       -.-++..++|                                      .++++. ..+.++++|..+..   +..+...
T Consensus       177 ~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~  255 (373)
T 2mad_H          177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             CceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeec
Confidence             0001111222                                      122222 23445555543221   1111000


Q ss_pred             CC-CcccccCcce---EEEcCCC-cEEEEeC---------CCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        239 GS-EEGQLKFPRG---VAVDDQG-YISVGDS---------GNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       239 ~~-~~~~~~~~~~---i~~~~~g-~~~v~~~---------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      .. .......|.+   +++++++ ++|++..         ..+.|.++|. +++.+..+.       ....|++++++||
T Consensus       256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-------~g~~p~~i~~s~D  328 (373)
T 2mad_H          256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-------LGHDVDAISVAQD  328 (373)
T ss_pred             CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-------CCCCcCeEEECCC
Confidence            00 0001112333   7889986 5777654         2468999995 567777772       1236999999999


Q ss_pred             Cc-EEEEeC-CCCeEEeC
Q psy13998        304 GN-ILVCDR-ENHRIQVF  319 (319)
Q Consensus       304 g~-~~v~~~-~~~~i~v~  319 (319)
                      |+ ++++.. .++.|.+|
T Consensus       329 g~~~l~v~~~~~~~V~Vi  346 (373)
T 2mad_H          329 GGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             CCeEEEEEcCCCCeEEEE
Confidence            98 555544 67888764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.56  E-value=8.8e-14  Score=122.86  Aligned_cols=238  Identities=8%  Similarity=-0.005  Sum_probs=139.2

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-------CceeeEEcCCCcEEEEcCC---------CCeE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADSS---------NHRV  121 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~~---------~~~i  121 (319)
                      ..+++|+|+|+++++ +.++.|++    |+..++.....+.       .+..++++|||+.++..+.         ++.|
T Consensus        18 ~~~~~~s~dg~~~~~-~~d~~i~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i   92 (719)
T 1z68_A           18 TFFPNWISGQEYLHQ-SADNNIVL----YNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY   92 (719)
T ss_dssp             CCCCEESSSSEEEEE-CTTSCEEE----EESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             CCccEECCCCeEEEE-cCCCCEEE----EEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence            347899999975555 46899999    8887766544332       2678999999987665543         5789


Q ss_pred             EEEcCCCcEE---EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc----
Q psy13998        122 QVFQSDGTFV---GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK----  194 (319)
Q Consensus       122 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----  194 (319)
                      ++||.++...   ..+         ...+..++|+|||+.++... ++.|++|++.+..      ... +...+..    
T Consensus        93 ~~~d~~~g~~~~~~~l---------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~------~~~-l~~~~~~~~v~  155 (719)
T 1z68_A           93 YIYDLSNGEFVRGNEL---------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP------PFQ-ITFNGRENKIF  155 (719)
T ss_dssp             EEEETTTTEECCSSCC---------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC------CEE-CCCCCBTTTEE
T ss_pred             EEEECCCCccccceec---------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC------cEE-EecCCCcCCeE
Confidence            9999655433   222         13467899999998777664 6799999987532      111 1000000    


Q ss_pred             CCC---------CCCceeEEEcCCCcEEEEeCCC----------------------------------CeEEEEeCCCCE
Q psy13998        195 AGQ---------LEHPHYIAVSNTNRVIVSDSNN----------------------------------HRVQIFDVNGRV  231 (319)
Q Consensus       195 ~~~---------~~~~~~~~~~~~g~~~v~~~~~----------------------------------~~i~~~~~~~~~  231 (319)
                      .++         .....+++++|||+.++..+.+                                  ..|++||.++..
T Consensus       156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~  235 (719)
T 1z68_A          156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA  235 (719)
T ss_dssp             ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred             cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence            000         1222579999999877655422                                  167788865532


Q ss_pred             E---EEeCCCCCCcccccCcceEEEcCCCcEEEEeC--CC--CEEEEEc----CCCceEEeecccCCCCCCCCCcc----
Q psy13998        232 I---TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS--GN--NRIQIFT----PDGQFLRAFGCWGSGDGEFKGLE----  296 (319)
Q Consensus       232 ~---~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~--~~--~~i~~~~----~~g~~~~~~~~~~~~~~~~~~~~----  296 (319)
                      .   ..+........+...+..++|+||++++++..  ..  ..|.+|+    ..+.....+.. .....+...+.    
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~  314 (719)
T 1z68_A          236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRTGWAGGFFV  314 (719)
T ss_dssp             HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSSSCSSSSSC
T ss_pred             ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-cccccCCceEccccC
Confidence            2   12211000012334567899999998777632  22  3588888    54332222210 00002222333    


Q ss_pred             -eEEEccCCc-E-EEEeCCCCeEEe
Q psy13998        297 -GVAVMSNGN-I-LVCDRENHRIQV  318 (319)
Q Consensus       297 -~l~~~~~g~-~-~v~~~~~~~i~v  318 (319)
                       .++|+|||+ + +++...++..++
T Consensus       315 ~~~~~spdg~~l~~~~~~~~g~~~l  339 (719)
T 1z68_A          315 STPVFSYDAISYYKIFSDKDGYKHI  339 (719)
T ss_dssp             CCCEECTTSSCEEEEEECTTSCEEE
T ss_pred             CccEECCCCCeEEEEEEccCCceEE
Confidence             789999998 3 334555554333

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.55  E-value=1.3e-11  Score=99.73  Aligned_cols=210  Identities=12%  Similarity=0.059  Sum_probs=124.0

Q ss_pred             CCCcceEEcCCCcEEE-EeCC-CCeEEEeccccccccceeeEE-ecCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEE
Q psy13998         56 TWPRGIAVGPDNSIVV-ADSS-NHRVQVCFPHFDLKTNCVFLA-FTWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      ..|..++++|+|+.++ +... ++.|.+    +| .+.+.... +..+.++.+.+++ +.|++.+.++++..++.+++..
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~v----iD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~  199 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGL----VV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEE----EE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence            4578899999998544 4433 578999    88 87777777 7766666666665 5677777888888888755554


Q ss_pred             EEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC-cCCCCCCc---eeEEE
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN-KAGQLEHP---HYIAV  206 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~  206 (319)
                      ..........+.........+.++ +.+++.. ..+.+.++|..+...    +.+..+..... .......|   ..+++
T Consensus       200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~~~~  274 (373)
T 2mad_H          200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA----TNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             EEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc----eEeeeeeecCCcccccceecCceEeEEE
Confidence            332110000000000012334443 3444444 567888888864311    11111111000 00011123   33788


Q ss_pred             cCCC-cEEEEeC---------CCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC-CCCEEEEEc
Q psy13998        207 SNTN-RVIVSDS---------NNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS-GNNRIQIFT  273 (319)
Q Consensus       207 ~~~g-~~~v~~~---------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~-~~~~i~~~~  273 (319)
                      ++++ ++|++..         ..+.|.++|.. ++.+.++..       ...|.+++++|||+ ++++.. .++.|.++|
T Consensus       275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------GHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            9886 5666543         24689999975 555566621       12589999999997 555544 689999999


Q ss_pred             C-CCceEEee
Q psy13998        274 P-DGQFLRAF  282 (319)
Q Consensus       274 ~-~g~~~~~~  282 (319)
                      . +++.++.+
T Consensus       348 ~~t~~vv~~i  357 (373)
T 2mad_H          348 AGAGDQDQST  357 (373)
T ss_pred             CCCCCEEeee
Confidence            4 67777774

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.54  E-value=1.7e-12  Score=100.33  Aligned_cols=215  Identities=13%  Similarity=0.097  Sum_probs=133.8

Q ss_pred             CceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCcc--CCCCCCceeEEE---eCCCeEEEEeC---------
Q psy13998         99 WPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNK--AGQLEHPHYIAV---SNTNRVIVSDS---------  163 (319)
Q Consensus        99 ~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~---~~~g~~~~~~~---------  163 (319)
                      .|.++.|++ ++.+|++.-..++|..|++++.....+..++..  ......+.+|.+   +++++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            678899986 567899988999999999774332233222110  011235689999   68899988522         


Q ss_pred             ----CCCEEEEEecCCceeeecCceeeeecccCCcCC-------CCCCceeEEEcCCCcEEEEeCCC-CeEEEEeCCCCE
Q psy13998        164 ----NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG-------QLEHPHYIAVSNTNRVIVSDSNN-HRVQIFDVNGRV  231 (319)
Q Consensus       164 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~v~~~~~-~~i~~~~~~~~~  231 (319)
                          .+..+..||+.+.   ..++.+...........       ....+..++++++|+.||+++.. +.|++++++|+.
T Consensus        94 ~~~~g~~~v~~~Dl~~~---~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLS---ENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             CCSSSCCEEEEEESSCC---TTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred             cccCCCCEEEEEcCCcC---CCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence                2578999998710   00122222211100001       22357899999999999999988 999999999985


Q ss_pred             EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEE-eeccc--CCCCCCCCCcceE-EEccCCcE-
Q psy13998        232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR-AFGCW--GSGDGEFKGLEGV-AVMSNGNI-  306 (319)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~-~~~~~--~~~~~~~~~~~~l-~~~~~g~~-  306 (319)
                      +..+............+++|+++|+|+++++....++|..||... ... .+...  +.. +....+.+| ....+|++ 
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~-pv~~~v~~~~~G~~-~~~~~~dgilp~~~~G~vl  248 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK-PYAWPEPVKINGDF-GTLSGTEKIVTVPVGNESV  248 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS-SSCCCEECEESSCC-CCCTTEEEEEEEEETTEEE
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC-CcceeecccccCCc-ccccCcccccccccCCEEE
Confidence            544321111112234578999999997666655599999999652 221 12111  111 244567775 55568885 


Q ss_pred             EEEeCCCCeEEe
Q psy13998        307 LVCDRENHRIQV  318 (319)
Q Consensus       307 ~v~~~~~~~i~v  318 (319)
                      +|++..++.+.+
T Consensus       249 lV~~~~~~~~~l  260 (334)
T 2p9w_A          249 LVGARAPYAISF  260 (334)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEcCCCCEEEE
Confidence            787766665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.53  E-value=2.5e-12  Score=112.53  Aligned_cols=248  Identities=12%  Similarity=0.043  Sum_probs=143.7

Q ss_pred             cCCCCcceEEcCCCcEEEEe--CCCCeEEEeccccccccceeeEEec----Cce---------eeEEc--CCCcE--EEE
Q psy13998         54 CFTWPRGIAVGPDNSIVVAD--SSNHRVQVCFPHFDLKTNCVFLAFT----WPR---------GIAVG--PDNSI--VVA  114 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~----~~~---------~l~~~--~~g~~--~~~  114 (319)
                      |-..+..+++++++-+|+..  ..++...+    |.....+....+.    ...         ...++  |||+.  +++
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATL----VRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEE----EEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEE----EEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            34577889999876677777  55778888    5543233333221    112         34344  88864  555


Q ss_pred             cCCCCeEEEEcCC--C-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----------CEEEEEecCCceeeec
Q psy13998        115 DSSNHRVQVFQSD--G-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----------HRVQIFDVNGRVFQSD  181 (319)
Q Consensus       115 ~~~~~~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----------~~i~~~~~~~~~~~~~  181 (319)
                      ...+..|++++.+  + .....+..... ..+...+.+++|+|||+.++..+.+          ..|++|++++......
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPRPLTPVSA-VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCEECSCCCC-STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCCCEeccCCcc-CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            5556789999866  3 33333321100 0023456789999999877665544          5788999875100000


Q ss_pred             CceeeeecccCCcC-CCCCCceeEEEcCCCcEEEEeCCC--------CeEEEEeCCC-C---EEEEeCCCCCCcccccCc
Q psy13998        182 GTFVGKFGSMGNKA-GQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNG-R---VITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       182 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~v~~~~~--------~~i~~~~~~~-~---~~~~~~~~~~~~~~~~~~  248 (319)
                      ++. ..+      . ........++++|+|+.++....+        ..|++|+.++ .   ....+.     ..+...+
T Consensus       177 ~~~-~~l------~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~  244 (662)
T 3azo_A          177 SAV-REL------SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAI  244 (662)
T ss_dssp             GGS-EES------SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCE
T ss_pred             Cce-eEE------EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceE
Confidence            111 111      1 112344568899999766543322        4799999762 2   333331     1223457


Q ss_pred             ceEEEcCCCcEEEEeCCCC--EEEEEcC-CCceEEeecccCCCC-CCC-CCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        249 RGVAVDDQGYISVGDSGNN--RIQIFTP-DGQFLRAFGCWGSGD-GEF-KGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~--~i~~~~~-~g~~~~~~~~~~~~~-~~~-~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..++|+|||+++++...++  .|++|+. +++............ ... ..+..++++++++++++... +.+++|
T Consensus       245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~  319 (662)
T 3azo_A          245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG  319 (662)
T ss_dssp             EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred             cceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence            7899999999888887777  7888886 444433221100000 000 01467899999998888877 777765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.52  E-value=1.5e-11  Score=97.01  Aligned_cols=238  Identities=16%  Similarity=0.198  Sum_probs=144.4

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eEE--------ecCceeeEEcCC----CcEEEEc--CC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FLA--------FTWPRGIAVGPD----NSIVVAD--SS  117 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~--------~~~~~~l~~~~~----g~~~~~~--~~  117 (319)
                      .+..|++|++.|+|++|++....++|++    ++......  +..        ...+.+|+++|+    +.+|++-  ..
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~----v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITR----VDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEE----EECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            4789999999999999999987899999    65432221  211        235789999985    6787753  34


Q ss_pred             CCeEEEEcCCC---------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-------------CCCEEEEEecCC
Q psy13998        118 NHRVQVFQSDG---------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------------NNHRVQIFDVNG  175 (319)
Q Consensus       118 ~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-------------~~~~i~~~~~~~  175 (319)
                      .++|..|..++         +....+....  ....+....|+|.++|.+|++.+             ..++|..++.++
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p--~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIP--KGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEEC--CCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCC--CCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            56888887433         1111111000  12234567899999999999854             246777777776


Q ss_pred             ceeeecCcee--eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC---eEEEEeCCCCE--EEEeCC---CCCC----
Q psy13998        176 RVFQSDGTFV--GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH---RVQIFDVNGRV--ITSFGS---EGSE----  241 (319)
Q Consensus       176 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~i~~~~~~~~~--~~~~~~---~~~~----  241 (319)
                      ..... ..+.  ..+      ...+..|.+++++++|.+|+++....   .|.+....+..  ....+.   ....    
T Consensus       184 ~ip~~-nPf~~~~i~------a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~  256 (347)
T 3das_A          184 EPAPG-NPFPGSPVY------SYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA  256 (347)
T ss_dssp             SBCTT-CSSTTCCEE------EBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred             CccCC-CCCCCCeEE------eeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence            42110 0000  001      12346789999999999999987542   34433221110  000000   0000    


Q ss_pred             --cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce-----EEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        242 --EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF-----LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       242 --~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                        ......|.+++|. +|.+|++.....+|..+..++..     ...+      .+...+|.+|++.|||.+|++..
T Consensus       257 ~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l------~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          257 QWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL------EGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES------TTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee------cCCCCCccEEEECCCCcEEEEEc
Confidence              0011357789987 57899998888888888743321     1112      23456899999999999888754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.52  E-value=7e-12  Score=100.51  Aligned_cols=208  Identities=14%  Similarity=0.162  Sum_probs=129.7

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCC----CeEEEEeCC---C--
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNT----NRVIVSDSN---N--  165 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~~~---~--  165 (319)
                      .+..|.+|+++|+|++|++... ++|++++.+|+ .+..+.   ........+.+|+++|+    +.+|++...   +  
T Consensus        27 ~l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~G~~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGRYLVTERP-GRLVLISPSGKKLVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             SCSCEEEEEEEETTEEEEEETT-TEEEEECSSCEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCCeEEEEcCCCeEEEEeCC-CEEEEEeCCCceEeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            3568999999999999999865 89999987776 222211   11122357899999996    788888753   3  


Q ss_pred             --CEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeCC
Q psy13998        166 --HRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVN  228 (319)
Q Consensus       166 --~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~~  228 (319)
                        +.|..|+.++.  .......++..+.     ......+..|+++|+|.+|++...             .+.|.+++++
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~-----~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIP-----GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEE-----CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCC-----CCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence              67888887653  1110001111121     112235678999999999998642             3689999887


Q ss_pred             CCE--------EEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCC---EEEEEcCCCceE---Ee-------ecccC
Q psy13998        229 GRV--------ITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNN---RIQIFTPDGQFL---RA-------FGCWG  286 (319)
Q Consensus       229 ~~~--------~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~---~i~~~~~~g~~~---~~-------~~~~~  286 (319)
                      |..        ...+      ...+..|.++++++ +|++|+++...+   .|.+....+..-   ..       +..+.
T Consensus       178 G~~p~~npf~~~~i~------a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  251 (354)
T 3a9g_A          178 GRPPADNPFPNSPIW------SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPV  251 (354)
T ss_dssp             SCCCTTSSSTTCCEE------EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCCCCCCCCCCCcEE------EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCE
Confidence            751        0111      11245789999999 789999998754   355554322100   00       00000


Q ss_pred             C-CCCCCCCcceEEE-------ccCCcEEEEeCCCCeEEe
Q psy13998        287 S-GDGEFKGLEGVAV-------MSNGNILVCDRENHRIQV  318 (319)
Q Consensus       287 ~-~~~~~~~~~~l~~-------~~~g~~~v~~~~~~~i~v  318 (319)
                      . .......|.++++       ..+|++|+++...++|..
T Consensus       252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~  291 (354)
T 3a9g_A          252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAA  291 (354)
T ss_dssp             EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEE
T ss_pred             eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEE
Confidence            0 0012346889999       357899999988877754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.51  E-value=2.6e-12  Score=113.69  Aligned_cols=207  Identities=7%  Similarity=0.006  Sum_probs=120.7

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---------CceeeEEcCCCcEEEEcCCC---------C
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------WPRGIAVGPDNSIVVADSSN---------H  119 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~g~~~~~~~~~---------~  119 (319)
                      ..++.|+|+|++++++  ++.|++    |+..++.....+.         ...+++++|||+.++..+.+         +
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILV----FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEE----EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEE----EECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            4689999999988886  899999    8887766544322         11337889999876665543         5


Q ss_pred             eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee---ecCceeeeecccCC---
Q psy13998        120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ---SDGTFVGKFGSMGN---  193 (319)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~---  193 (319)
                      .+++||..+.....+      ..+.......+|+|||+.++.. .++.|++|+..+....   .++.....+.....   
T Consensus        93 ~~~~~d~~~~~~~~l------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           93 SYDIYDLNKRQLITE------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             EEEEEETTTTEECCS------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EEEEEECCCCcEEEc------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence            677999655544443      2223456889999999876665 4678999998753211   11110000000000   


Q ss_pred             cCCCCCCceeEEEcCCCcEEEEeCC------------------------------------CCeEEEEeCCC---C---E
Q psy13998        194 KAGQLEHPHYIAVSNTNRVIVSDSN------------------------------------NHRVQIFDVNG---R---V  231 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~~~v~~~~------------------------------------~~~i~~~~~~~---~---~  231 (319)
                      .+..+....+++++|||+.++....                                    ...|++||.++   .   .
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence            0000123346889999976554321                                    01577788655   3   3


Q ss_pred             EEEeCCCCCCcccccCcceEEEcCCCcEEEEeC----CCCEEEEEcC-CCc
Q psy13998        232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS----GNNRIQIFTP-DGQ  277 (319)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~----~~~~i~~~~~-~g~  277 (319)
                      ...+.......++...+..++|+|||++++...    .+..|.+||. .|+
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            333321100001334567899999998555432    2347899994 444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=1.3e-11  Score=100.47  Aligned_cols=210  Identities=14%  Similarity=0.117  Sum_probs=122.1

Q ss_pred             CCCcceEEcCCCc-EEEEeCC-CCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEE
Q psy13998         56 TWPRGIAVGPDNS-IVVADSS-NHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFV  131 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~  131 (319)
                      ..|.+++++|||+ +|++... ++.|.+    +|..+.+....+.-+.+..+.|++ ..|++.+.++++...+ .+++..
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsV----ID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~  252 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGV----VDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETK  252 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEE----EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEE----EECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence            3588999999987 4555543 678989    888887777766654433344433 4556555666666666 344433


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccC-CcCCCCCCce---eEEE
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-NKAGQLEHPH---YIAV  206 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~  206 (319)
                      .... .............+.+.+++. +|+. ...+.+.++|..+.....    +..+.... ........|.   .+++
T Consensus       253 ~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v----~~~~~~~~~~~i~~g~~p~g~~~va~  326 (426)
T 3c75_H          253 VTNT-EVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATF----RAPIEALTEAERADDWRPGGWQQTAY  326 (426)
T ss_dssp             EEEC-CCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEE----CCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred             EEee-eeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEE----eeeeeeccccccccccccCCceeeEE
Confidence            2211 000000000112345677664 4444 456789988886532211    11111000 0000001122   3789


Q ss_pred             cCCC-cEEEEeC---------CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc
Q psy13998        207 SNTN-RVIVSDS---------NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT  273 (319)
Q Consensus       207 ~~~g-~~~v~~~---------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~  273 (319)
                      ++++ ++|++..         ..+.|.++|. +.+.+.++.      . ...|.+|+++|||+  +|++...++.|.++|
T Consensus       327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~------v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE------L-GHEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------E-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE------C-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            9886 6777753         2457999996 566777662      1 12589999999987  566666799999999


Q ss_pred             -CCCceEEee
Q psy13998        274 -PDGQFLRAF  282 (319)
Q Consensus       274 -~~g~~~~~~  282 (319)
                       .+++.++.+
T Consensus       400 ~~t~kvv~tI  409 (426)
T 3c75_H          400 AATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence             578888876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.51  E-value=2e-12  Score=113.13  Aligned_cols=235  Identities=14%  Similarity=0.067  Sum_probs=134.5

Q ss_pred             ceEEc--CCCcE-EE-EeCCCCeEEEeccccccc--cceeeEEe---------cCceeeEEcCCCcEEEEcCCC------
Q psy13998         60 GIAVG--PDNSI-VV-ADSSNHRVQVCFPHFDLK--TNCVFLAF---------TWPRGIAVGPDNSIVVADSSN------  118 (319)
Q Consensus        60 ~v~~~--~~g~~-~~-~~~~~~~v~~~~~~~~~~--~~~~~~~~---------~~~~~l~~~~~g~~~~~~~~~------  118 (319)
                      ...++  |||+. ++ +...+..|.+    ++..  +.+....+         ..+.+++|+|||+.++..+.+      
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~----~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~  156 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYA----FEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGP  156 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEE----ECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSST
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEE----EcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCC
Confidence            44454  88886 44 4344667777    6654  10222222         235678999999866655443      


Q ss_pred             ----CeEEEEcCCC------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--------CEEEEEecCC-ceee
Q psy13998        119 ----HRVQVFQSDG------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNG-RVFQ  179 (319)
Q Consensus       119 ----~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--------~~i~~~~~~~-~~~~  179 (319)
                          ..|++|+.++      .....+..     .+...+..++++|||+.++..+.+        ..|.+|++++ ....
T Consensus       157 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~  231 (662)
T 3azo_A          157 SDVRRFLAAVPLDGSAAADRSAVRELSD-----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA  231 (662)
T ss_dssp             TCEEEEEEEEETTSTTTTCGGGSEESSC-----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred             CCceeEEEEEECCCCccccCCceeEEEe-----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence                5799999665      33333320     122355678999999866544322        4799999873 2000


Q ss_pred             ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC--eEEEEeCCCCEEEEeCCCCCCcccc---cCcceEEEc
Q psy13998        180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVITSFGSEGSEEGQL---KFPRGVAVD  254 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~  254 (319)
                         +. ..+.     ..+...+..++++|+|+++++...++  .|++|+.++.....+..........   ..+..++++
T Consensus       232 ---~~-~~l~-----~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~  302 (662)
T 3azo_A          232 ---DT-RTLL-----GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL  302 (662)
T ss_dssp             ---EE-EEEE-----EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC
T ss_pred             ---cc-EEeC-----CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEe
Confidence               11 1110     11123467789999999888877777  7888887443344432111100000   014578999


Q ss_pred             CCCcEEEEeCCCCEEEEE--cCCCceEEeecccCCCCCCCCCcceE-EEccCCcEEEEeCCCCeEEeC
Q psy13998        255 DQGYISVGDSGNNRIQIF--TPDGQFLRAFGCWGSGDGEFKGLEGV-AVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       255 ~~g~~~v~~~~~~~i~~~--~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++++++... +.+.+|  +.++..++.+      ..+...+..+ +++++..++++.+.+....+|
T Consensus       303 ~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          303 ANGLIAVVHGK-GAAVLGILDPESGELVDA------AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             TTSCEEEEEBS-SSCEEEEEETTTTEEEEC------CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEEEc-CccEEEEEECCCCcEEEe------cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            99998888877 766666  6665556666      3334445555 554443355555555444443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.49  E-value=6e-12  Score=100.99  Aligned_cols=254  Identities=12%  Similarity=0.174  Sum_probs=146.9

Q ss_pred             CCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccce--eeEE--------ecCceeeEEcCC----CcEEEEcCC--
Q psy13998         55 FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNC--VFLA--------FTWPRGIAVGPD----NSIVVADSS--  117 (319)
Q Consensus        55 ~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~--~~~~--------~~~~~~l~~~~~----g~~~~~~~~--  117 (319)
                      +..|++|++.|+|+ +|++.. .++|++    ++.....  .+..        ...+.+|+++|+    +.+|++...  
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~-~G~i~~----~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~   91 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLR-GGELRH----WQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG   91 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEET-TTEEEE----EETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred             CCCcEEEEEcCCCCEEEEEeC-CceEEE----EeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence            67899999999999 999886 589998    5432111  0111        125689999994    778888543  


Q ss_pred             -----CCeEEEEcCCC---cE--EEE-ecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEEEEec
Q psy13998        118 -----NHRVQVFQSDG---TF--VGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDV  173 (319)
Q Consensus       118 -----~~~i~~~~~~~---~~--~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~~~~~  173 (319)
                           ..+|..++.++   ..  ... +..........+.+..|++.|+|.+|++.+.             .++|..++.
T Consensus        92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~  171 (353)
T 2g8s_A           92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD  171 (353)
T ss_dssp             SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred             CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence                 34687776322   11  111 1111100122345688999999999999654             357888888


Q ss_pred             CCceeeecCceeeeec-ccCCcCCCCCCceeEEEcC-CCcEEEEeCCCC---eEEEEeCCCCE---EEE---------eC
Q psy13998        174 NGRVFQSDGTFVGKFG-SMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNH---RVQIFDVNGRV---ITS---------FG  236 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~---~i~~~~~~~~~---~~~---------~~  236 (319)
                      ++.....+ .+...-. ...........|.++++++ +|++|+++....   .|.+....+..   ...         +.
T Consensus       172 dG~~p~~n-pf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~  250 (353)
T 2g8s_A          172 QGEIPDDN-PFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP  250 (353)
T ss_dssp             TSCCCTTC-TTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred             CCCCCCCC-CCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence            76421100 0000000 0000011245789999999 789999887532   34333221110   000         00


Q ss_pred             ------CCCCCc-----ccccCcceEEEcC-------CCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcce
Q psy13998        237 ------SEGSEE-----GQLKFPRGVAVDD-------QGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       237 ------~~~~~~-----~~~~~~~~i~~~~-------~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  297 (319)
                            ......     .+...|.++++..       +|.+|++....++|..++.++ +........   ......|.+
T Consensus       251 ~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~rp~~  327 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL---TDRGQRIRD  327 (353)
T ss_dssp             TCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES---GGGCCCEEE
T ss_pred             cccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc---cCCCCceeE
Confidence                  000000     1123577888863       578999999999999998543 333221100   122457999


Q ss_pred             EEEccCCcEEEE-eCCCCeEE
Q psy13998        298 VAVMSNGNILVC-DRENHRIQ  317 (319)
Q Consensus       298 l~~~~~g~~~v~-~~~~~~i~  317 (319)
                      ++++|||.+|++ +..+++|.
T Consensus       328 v~~~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          328 VRTGPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             EEECTTSCEEEEECSTTEEEE
T ss_pred             EEECCCCcEEEEEeCCCCEEE
Confidence            999999999886 55667654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.49  E-value=2.6e-11  Score=90.83  Aligned_cols=187  Identities=12%  Similarity=0.093  Sum_probs=127.5

Q ss_pred             eeeEEcCCCcEEEEcCCCC--eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998        101 RGIAVGPDNSIVVADSSNH--RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV  177 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~--~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  177 (319)
                      .++.++ ++.+|++.+..+  .|.++| .+|+.+..+....     .....++++. .+++|++...++.+.+||..+. 
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-----~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~-  117 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-----RYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNL-  117 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTC-
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-----ccceeEEEEe-CCEEEEEEeeCCEEEEEECccC-
Confidence            889998 678999887654  899999 6788888775321     1223456665 4689999999999999999853 


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                           +.+.++...       ....+++.+ .+.+|+++. ++.|+++|+. .+.+..+..... ......++.+.+. +
T Consensus       118 -----~~~~ti~~~-------~eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~-g~~~~~lNELe~~-~  181 (262)
T 3nol_A          118 -----RQVRSFNYD-------GEGWGLTHN-DQYLIMSDG-TPVLRFLDPESLTPVRTITVTAH-GEELPELNELEWV-D  181 (262)
T ss_dssp             -----CEEEEEECS-------SCCCCEEEC-SSCEEECCS-SSEEEEECTTTCSEEEEEECEET-TEECCCEEEEEEE-T
T ss_pred             -----cEEEEEECC-------CCceEEecC-CCEEEEECC-CCeEEEEcCCCCeEEEEEEeccC-CccccccceeEEE-C
Confidence                 555555321       123445543 246777764 7899999975 566666532110 1122344557775 7


Q ss_pred             CcEEEEeCCCCEEEEEcC-CCceEEeecccCCC------CCCCCCcceEEEccCCc-EEEEeC
Q psy13998        257 GYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSG------DGEFKGLEGVAVMSNGN-ILVCDR  311 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~------~~~~~~~~~l~~~~~g~-~~v~~~  311 (319)
                      |++|+....++.|.++|+ +|+.+..+...+..      .....-+++||++|+++ +|+++-
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            899999999999999995 78888877542211      12234689999999865 888774

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.48  E-value=1.3e-10  Score=92.58  Aligned_cols=213  Identities=14%  Similarity=0.154  Sum_probs=141.8

Q ss_pred             eEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecC
Q psy13998         61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGS  136 (319)
Q Consensus        61 v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  136 (319)
                      ..+. ++.+|+. +.++.+..    ++.. +.......    ....+..++++.+|+.. .++.+..++.+|+....+..
T Consensus       103 ~~~~-~~~l~v~-t~~~~l~~----~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt-~~~~l~~~d~~g~~~~~~~~  174 (330)
T 3hxj_A          103 FTIF-EDILYVT-SMDGHLYA----INTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS-NDNYLYAINPDGTEKWRFKT  174 (330)
T ss_dssp             EEEE-TTEEEEE-CTTSEEEE----ECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC-TTSEEEEECTTSCEEEEEEC
T ss_pred             ceEE-CCEEEEE-ecCCEEEE----EcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc-CCCEEEEECCCCCEeEEEec
Confidence            3444 6666664 55678888    7765 33332222    23566777788888764 56789999977877766642


Q ss_pred             CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998        137 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  216 (319)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  216 (319)
                      .      ...+..+.+++++.+|+..   +.+..++..+       +.......      ....+.+++++++|.+|++.
T Consensus       175 ~------~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g-------~~~~~~~~------~~~~~~~~~~~~~g~l~v~t  232 (330)
T 3hxj_A          175 N------DAITSAASIGKDGTIYFGS---DKVYAINPDG-------TEKWNFYA------GYWTVTRPAISEDGTIYVTS  232 (330)
T ss_dssp             S------SCCCSCCEECTTCCEEEES---SSEEEECTTS-------CEEEEECC------SSCCCSCCEECTTSCEEEEE
T ss_pred             C------CCceeeeEEcCCCEEEEEe---CEEEEECCCC-------cEEEEEcc------CCcceeceEECCCCeEEEEc
Confidence            2      2345667788889988876   7788888544       33332211      11345678888888888876


Q ss_pred             CCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcc
Q psy13998        217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE  296 (319)
Q Consensus       217 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~  296 (319)
                      . ++.++.++.++..+..+..      ....+..+.++++|++|++. .++.|+.++++|+.+..+.      .....+.
T Consensus       233 ~-~~gl~~~~~~g~~~~~~~~------~~~~~~~~~~~~~g~l~v~t-~~ggl~~~d~~g~~~~~~~------~~~~~~~  298 (330)
T 3hxj_A          233 L-DGHLYAINPDGTEKWRFKT------GKRIESSPVIGNTDTIYFGS-YDGHLYAINPDGTEKWNFE------TGSWIIA  298 (330)
T ss_dssp             T-TTEEEEECTTSCEEEEEEC------SSCCCSCCEECTTSCEEEEC-TTCEEEEECTTSCEEEEEE------CSSCCCS
T ss_pred             C-CCeEEEECCCCCEeEEeeC------CCCccccceEcCCCeEEEec-CCCCEEEECCCCcEEEEEE------cCCcccc
Confidence            5 5688888988887766632      11224456778788888775 4678999999888877663      2334577


Q ss_pred             eEEEccCCcEEEEeCCCCeEEe
Q psy13998        297 GVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       297 ~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ++..+++|++|+.. .+|.+++
T Consensus       299 ~~~~d~~g~l~~gt-~~G~~~~  319 (330)
T 3hxj_A          299 TPVIDENGTIYFGT-RNGKFYA  319 (330)
T ss_dssp             CCEECTTCCEEEEC-TTSCEEE
T ss_pred             ceEEcCCCEEEEEc-CCCeEEE
Confidence            88888999988854 5566654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.48  E-value=3.9e-12  Score=103.88  Aligned_cols=221  Identities=9%  Similarity=-0.001  Sum_probs=124.3

Q ss_pred             CcceEEcCCCcEEEEeCC-CC--eEEEeccccccccceeeEEecC----ceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc
Q psy13998         58 PRGIAVGPDNSIVVADSS-NH--RVQVCFPHFDLKTNCVFLAFTW----PRGIAVGPDNSIVVADSSNHRVQVFQS-DGT  129 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~  129 (319)
                      ....+|+|||+.++..+. ++  .|.+    |+..+.........    ..+++++|+|+.++....+..|++||. .++
T Consensus        38 ~~~~~~SpDg~~l~~~~~~~g~~~l~~----~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           38 FYQKCFTRDGSKLLFGGAFDGPWNYYL----LDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEE----EETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             hcCccCCCCCCEEEEEEcCCCCceEEE----EeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            344789999996655554 55  4777    77766554432221    236789999987766666789999994 455


Q ss_pred             EEEEecCCCccCCCCCCce--eEEEeCCCeEEEEe----------------------CCCCEEEEEecCCceeeecCcee
Q psy13998        130 FVGKFGSMGNKAGQLEHPH--YIAVSNTNRVIVSD----------------------SNNHRVQIFDVNGRVFQSDGTFV  185 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~--~l~~~~~g~~~~~~----------------------~~~~~i~~~~~~~~~~~~~~~~~  185 (319)
                      ....+...      .....  ...+++++++++..                      ..+..|.+||+.+.      +..
T Consensus       114 ~~~~~~~~------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------~~~  181 (388)
T 3pe7_A          114 ENVVYQVP------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------EST  181 (388)
T ss_dssp             EEEEEECC------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------CEE
T ss_pred             ceeeeech------hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC------ceE
Confidence            44333211      11111  22347888776631                      23467888888753      211


Q ss_pred             eeecccCCcCCCCCCceeEEEcC-CCcEEEE-eCC-----CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        186 GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVS-DSN-----NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~-~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                      ...       ........++++| +|+.++. ...     ...|++++.++.....+...    .....+...+|+|||+
T Consensus       182 ~l~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          182 VIL-------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH----AEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EEE-------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC----CTTEEEEEEEECTTSS
T ss_pred             Eee-------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC----CCCcccccceECCCCC
Confidence            111       1122356789999 8865443 322     34899999877655555211    0002345678999997


Q ss_pred             -EEEEeC-CC---CEEEEEcCCCceEEeecccCCCCC--C-CCCcceEEEccCCcEEE
Q psy13998        259 -ISVGDS-GN---NRIQIFTPDGQFLRAFGCWGSGDG--E-FKGLEGVAVMSNGNILV  308 (319)
Q Consensus       259 -~~v~~~-~~---~~i~~~~~~g~~~~~~~~~~~~~~--~-~~~~~~l~~~~~g~~~v  308 (319)
                       ++++.. ..   ..|++||..+...+.+...   ..  + ...+.+++|+|||+.++
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~~~~~~~spdg~~l~  305 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSM---PACSHLMSNYDGSLMVGDGSDAP  305 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEEEEEEE---CCEEEEEECTTSSEEEEEECCC-
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceEEEEcC---CCceeeeecCCCCeEccCCCcce
Confidence             433332 22   2499999654332222110   11  0 01244567899987444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.47  E-value=4.1e-12  Score=103.96  Aligned_cols=266  Identities=10%  Similarity=-0.056  Sum_probs=140.6

Q ss_pred             ccccCCCccchhcccccee---eeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         24 IGQVGTTPRSQYLQKRRLQ---FKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        24 i~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      +..+++||++.+++.....   ..+..++...+        +......+.|+|+|+.++..+.++.|++    |+..+..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~----~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMK----VDLETLE  113 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEE----EETTTCC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEE----EECCCCC
Confidence            6778899999886543211   11111111111        1122234889999998877777778999    8776554


Q ss_pred             eeEEecCce----e-------------------eEEcCCCcEEEEc-----CCCCeEEEEcC-CCcEEEEecCCCccCCC
Q psy13998         93 VFLAFTWPR----G-------------------IAVGPDNSIVVAD-----SSNHRVQVFQS-DGTFVGKFGSMGNKAGQ  143 (319)
Q Consensus        93 ~~~~~~~~~----~-------------------l~~~~~g~~~~~~-----~~~~~i~~~~~-~~~~~~~~~~~~~~~~~  143 (319)
                      .......+.    .                   +.++|+++.++..     ..+..|++||. .++......       +
T Consensus       114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-------~  186 (396)
T 3c5m_A          114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-------D  186 (396)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-------E
T ss_pred             cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-------C
Confidence            332221111    1                   2345555432221     34568999995 444433321       2


Q ss_pred             CCCceeEEEeC-CCe-EEEEeCC-C----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE-EEE
Q psy13998        144 LEHPHYIAVSN-TNR-VIVSDSN-N----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVS  215 (319)
Q Consensus       144 ~~~~~~l~~~~-~g~-~~~~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~  215 (319)
                      ...+..++++| +++ ++++... .    ..|.+++.++..       ...+..    ......+..++++|+|+. +++
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~l~~----~~~~~~~~~~~~spdg~~l~~~  255 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------VRKIKE----HAEGESCTHEFWIPDGSAMAYV  255 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------CEESSC----CCTTEEEEEEEECTTSSCEEEE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------eeEeec----cCCCccccceEECCCCCEEEEE
Confidence            23457889999 676 4443322 2    468888876531       111100    000123566899999974 443


Q ss_pred             eC--CC--CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeC----------------CCCEEEEEcC
Q psy13998        216 DS--NN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDS----------------GNNRIQIFTP  274 (319)
Q Consensus       216 ~~--~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~----------------~~~~i~~~~~  274 (319)
                      ..  ..  +.|++||..+.....+...   ..    .. +.++| +|++++...                .+..|++|+.
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          256 SYFKGQTDRVIYKANPETLENEEVMVM---PP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             EEETTTCCEEEEEECTTTCCEEEEEEC---CS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             ecCCCCccceEEEEECCCCCeEEeeeC---CC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            22  22  3499999754333332110   11    12 78899 998777643                3478999996


Q ss_pred             CCceEEeecccCCCC-----CCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        275 DGQFLRAFGCWGSGD-----GEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       275 ~g~~~~~~~~~~~~~-----~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      .+..+..+.......     .....+..++|+|||+ ++++...++...+|
T Consensus       328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence            543333332100000     0001255678999997 44555555555554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.45  E-value=3.1e-11  Score=90.36  Aligned_cols=186  Identities=9%  Similarity=0.054  Sum_probs=128.1

Q ss_pred             eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee
Q psy13998        101 RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ  179 (319)
Q Consensus       101 ~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  179 (319)
                      .++.++ ++.+|++.+.++.|.++| .+++.+..+ ...     .....++++.. +++|+....++.+.+||..+.   
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-----~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl---  126 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-----NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP---  126 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-----TCCEEEEEECS-SCEEEEESSSCEEEEEETTTT---
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-----CcceeEEEEeC-CEEEEEEccCCEEEEEECCcC---
Confidence            789987 478999999999999999 678777666 321     12234566653 589999999999999999853   


Q ss_pred             ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998        180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  258 (319)
                         +.+.++...       ....+++.+ .+++|+++ .++.|+++|+. .+.+.++..... ......++.+.+. +|+
T Consensus       127 ---~~~~ti~~~-------~eGwGLt~D-g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          127 ---QRERTTRYS-------GEGWGLCYW-NGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA-NGV  192 (268)
T ss_dssp             ---EEEEEEECS-------SCCCCEEEE-TTEEEEEC-SSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTE
T ss_pred             ---cEEEEEeCC-------CceeEEecC-CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-CCE
Confidence               555555321       123456644 23677776 58899999974 566666532211 1223345667776 789


Q ss_pred             EEEEeCCCCEEEEEcC-CCceEEeecccCC-------CCCCCCCcceEEEccCCc-EEEEeC
Q psy13998        259 ISVGDSGNNRIQIFTP-DGQFLRAFGCWGS-------GDGEFKGLEGVAVMSNGN-ILVCDR  311 (319)
Q Consensus       259 ~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~-------~~~~~~~~~~l~~~~~g~-~~v~~~  311 (319)
                      +|+....++.|.++|+ +|+.+..+...+.       ......-+++||++|+++ +|+++-
T Consensus       193 lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          193 IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999988999999995 7888877743210       112334689999999765 888874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.45  E-value=2.4e-11  Score=97.38  Aligned_cols=236  Identities=9%  Similarity=-0.006  Sum_probs=138.6

Q ss_pred             CcEEEEeCCCC----eEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcC---------CCCeEEEEc-CCC
Q psy13998         67 NSIVVADSSNH----RVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADS---------SNHRVQVFQ-SDG  128 (319)
Q Consensus        67 g~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~---------~~~~i~~~~-~~~  128 (319)
                      .++|++...++    +|.+    +|..+.+.+..+.   .| +++++|+++ +|++..         .++.|.+|| .++
T Consensus        32 ~~~yV~~~~~~~~~d~vsv----ID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWV----SCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEE----EETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             CeEEEECCccCCccceEEE----EECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            46888888776    8889    8888887777554   67 899999985 777752         467899999 677


Q ss_pred             cEEEEecCCCcc-CCCCCCceeEEEeCCCe-EEEEeCC-CCEEEE--EecCCceee---------ecC-----------c
Q psy13998        129 TFVGKFGSMGNK-AGQLEHPHYIAVSNTNR-VIVSDSN-NHRVQI--FDVNGRVFQ---------SDG-----------T  183 (319)
Q Consensus       129 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~-~~~~~~~-~~~i~~--~~~~~~~~~---------~~~-----------~  183 (319)
                      +.+.++...+.. ......|..++++|||+ +|++... ...+.+  +|.......         +++           +
T Consensus       107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~  186 (368)
T 1mda_H          107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTS
T ss_pred             CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCC
Confidence            888887533110 00124689999999985 5555544 567888  777431000         000           0


Q ss_pred             eeeeeccc------CCc-------CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCc----cccc
Q psy13998        184 FVGKFGSM------GNK-------AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEE----GQLK  246 (319)
Q Consensus       184 ~~~~~~~~------~~~-------~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~  246 (319)
                      ... +...      +..       ..-...|.  +....+.+|++..  +.+.++|..+.............    ....
T Consensus       187 ~~~-vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~  261 (368)
T 1mda_H          187 LAA-SDLAAAPAAAGIVGAQCTGAQNCSSQAA--QANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             CEE-EECCSSCCCCEECCCCSCTTSCBCSCCE--EETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred             EEE-EECccccccCCeEEEEeeeeeeCCCCcc--ccccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecccccccccc
Confidence            000 0000      000       00001222  2222334455544  78888887542211111100000    0111


Q ss_pred             Ccce---EEEcCCC-cEEEEeC---C-----CCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeC-
Q psy13998        247 FPRG---VAVDDQG-YISVGDS---G-----NNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDR-  311 (319)
Q Consensus       247 ~~~~---i~~~~~g-~~~v~~~---~-----~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~-  311 (319)
                      .|.+   +++++++ ++|++..   .     .+.+.++|. +.+.+..+.      . ...|++|++++||+ +|++.. 
T Consensus       262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~------v-g~~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS------N-GHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE------E-EEEECEEEECCSSSCEEEEEET
T ss_pred             ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE------C-CCCcceEEECCCCCEEEEEccC
Confidence            2333   8899997 4777654   2     346679994 667777762      1 22699999999997 788887 


Q ss_pred             CCCeEEeC
Q psy13998        312 ENHRIQVF  319 (319)
Q Consensus       312 ~~~~i~v~  319 (319)
                      .++.|.++
T Consensus       335 ~~~~VsVI  342 (368)
T 1mda_H          335 GTEVLDIY  342 (368)
T ss_dssp             TTTEEEEE
T ss_pred             CCCeEEEE
Confidence            68888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.43  E-value=2.6e-10  Score=84.73  Aligned_cols=189  Identities=14%  Similarity=0.128  Sum_probs=128.7

Q ss_pred             CceeeEEcCCCcEEEEcCCC--CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998         99 WPRGIAVGPDNSIVVADSSN--HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~--~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      ..+++.++. +.+|.+.+..  ..|.++| .+|+.+..+....     .....++++. .+++|+....++.+.+||..+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----TCCEEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----CcceeEEEEe-CCEEEEEEeeCCEEEEEECCc
Confidence            347899986 7899987764  5899999 6888888775331     1223556665 478999999999999999985


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEc
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVD  254 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~  254 (319)
                      .      +.+.++...       ....+++.+ .+++|+++. ++.|+++|+. .+.+.++..... ......++.+.+.
T Consensus        95 l------~~~~ti~~~-------~~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~  158 (243)
T 3mbr_X           95 L------TPRARFRYP-------GEGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV  158 (243)
T ss_dssp             T------EEEEEEECS-------SCCCEEEEC-SSCEEEECS-SSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE
T ss_pred             C------cEEEEEeCC-------CCceEEeeC-CCEEEEECC-CCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe
Confidence            3      555555321       123556543 347888875 8899999974 566665532211 1122344556665


Q ss_pred             CCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCC-------CCCCCCcceEEEccCCc-EEEEeC
Q psy13998        255 DQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSG-------DGEFKGLEGVAVMSNGN-ILVCDR  311 (319)
Q Consensus       255 ~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-------~~~~~~~~~l~~~~~g~-~~v~~~  311 (319)
                       +|++|+....++.|.++|+ +|+.+..+...+..       .....-+++||++|+++ +|+++-
T Consensus       159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence             7899999988999999995 78888877533211       12234689999999765 888874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.39  E-value=4.8e-11  Score=95.61  Aligned_cols=212  Identities=11%  Similarity=0.047  Sum_probs=125.0

Q ss_pred             CCcceEEcCCCc-EEEEeC---------CCCeEEEeccccccccceeeEEe-----------cCceeeEEcCCCc-EEEE
Q psy13998         57 WPRGIAVGPDNS-IVVADS---------SNHRVQVCFPHFDLKTNCVFLAF-----------TWPRGIAVGPDNS-IVVA  114 (319)
Q Consensus        57 ~~~~v~~~~~g~-~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~g~-~~~~  114 (319)
                      .| +++++|+|+ +|++..         .++.|.+    ||..+.+....+           ..|..++++|||+ +|++
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsv----iD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa  141 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEV----FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF  141 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE----ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEE----EECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence            46 899999997 666652         3688999    898888777654           2588999999996 6666


Q ss_pred             cCC-CCeEEE--EcCCCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCC-------------------------
Q psy13998        115 DSS-NHRVQV--FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNN-------------------------  165 (319)
Q Consensus       115 ~~~-~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~-------------------------  165 (319)
                      ... ...+.+  +|...  +..+...+.          ..+.|+ ...|++.+.+                         
T Consensus       142 n~~~~~~v~V~~iD~~t--v~~i~v~~~----------~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~  209 (368)
T 1mda_H          142 LFGSSAAAGLSVPGASD--DQLTKSASC----------FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA  209 (368)
T ss_dssp             ECSSSCEEEEEETTTEE--EEEEECSSC----------CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred             ccCCCCeEEEEEEchhh--ceEEECCCc----------eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence            644 467888  88533  344422110          000111 1222222223                         


Q ss_pred             ---------------------CEEEEEecCCceeeecCceeeeecccCC-cCCCCCCcee---EEEcCCC-cEEEEeC--
Q psy13998        166 ---------------------HRVQIFDVNGRVFQSDGTFVGKFGSMGN-KAGQLEHPHY---IAVSNTN-RVIVSDS--  217 (319)
Q Consensus       166 ---------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~g-~~~v~~~--  217 (319)
                                           +.+.++|..+...    +++..+..... .......|.+   +++++++ ++|++..  
T Consensus       210 i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~  285 (368)
T 1mda_H          210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             SCBCSCCEEETTTTEEEECBSSCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             eeCCCCccccccCCEEEEEcCCEEEEEECCCCcc----eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence                                 3344444322100    01111100000 0001112333   7899987 5666544  


Q ss_pred             -C-----CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC-CCCEEEEEc-CCCceEEeecccCC
Q psy13998        218 -N-----NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS-GNNRIQIFT-PDGQFLRAFGCWGS  287 (319)
Q Consensus       218 -~-----~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~-~~~~i~~~~-~~g~~~~~~~~~~~  287 (319)
                       .     .+.+.++|. +.+.+..+      .. ...|.+|++++||+ +|++.. .++.|.++| .+++.++++     
T Consensus       286 ~~~~~~~~~~~~ViD~~t~~vv~~i------~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I-----  353 (368)
T 1mda_H          286 SRSCLAAAENTSSVTASVGQTSGPI------SN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV-----  353 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECC------EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC-----
T ss_pred             cCcccccCCCEEEEECCCCeEEEEE------EC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE-----
Confidence             2     245669996 45566555      21 22589999999986 788888 699999999 567888887     


Q ss_pred             CCCCCCCcceEEEccC
Q psy13998        288 GDGEFKGLEGVAVMSN  303 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~  303 (319)
                        .....|++|++.++
T Consensus       354 --~vg~~P~~i~~~~~  367 (368)
T 1mda_H          354 --ELDKGPESLSVQNE  367 (368)
T ss_dssp             --CCCSCCCEEECCCC
T ss_pred             --ECCCCCCEEEeecC
Confidence              23457888888654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.39  E-value=2.1e-10  Score=91.46  Aligned_cols=209  Identities=14%  Similarity=0.148  Sum_probs=134.7

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK  133 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~  133 (319)
                      +.++.++++|.+|+...  + +..    ++.. +.....+.    ......+. ++.+|+. +.++.+..++.+|+....
T Consensus        62 ~~~~~~~~~g~l~v~t~--~-l~~----~d~~-g~~~~~~~~~~~~~~~~~~~-~~~l~v~-t~~~~l~~~d~~g~~~~~  131 (330)
T 3hxj_A           62 ECRPSIGKDGTIYFGSD--K-VYA----INPD-GTEKWRFDTKKAIVSDFTIF-EDILYVT-SMDGHLYAINTDGTEKWR  131 (330)
T ss_dssp             EECCEETTTTEECCSSC--E-EEE----ECCC-GGGGGGSCC-----CCEEEE-TTEEEEE-CTTSEEEEECTTSCEEEE
T ss_pred             ccceEEecCCcEEEecC--c-EEE----ECCC-CcEEEEEECCCCcccCceEE-CCEEEEE-ecCCEEEEEcCCCCEEEE
Confidence            46778888888887543  2 777    6542 22221111    11223333 6667765 456789999976877666


Q ss_pred             ecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE
Q psy13998        134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI  213 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  213 (319)
                      ....      ...+..+..++++++|+. +.++.+..++..+.       ....+..      .......+.+++++.+|
T Consensus       132 ~~~~------~~~~~~~~~~~~g~l~vg-t~~~~l~~~d~~g~-------~~~~~~~------~~~~~~~~~~d~~g~l~  191 (330)
T 3hxj_A          132 FKTK------KAIYATPIVSEDGTIYVG-SNDNYLYAINPDGT-------EKWRFKT------NDAITSAASIGKDGTIY  191 (330)
T ss_dssp             EECS------SCCCSCCEECTTSCEEEE-CTTSEEEEECTTSC-------EEEEEEC------SSCCCSCCEECTTCCEE
T ss_pred             EcCC------CceeeeeEEcCCCEEEEE-cCCCEEEEECCCCC-------EeEEEec------CCCceeeeEEcCCCEEE
Confidence            5322      123456677878887775 45688999988743       2222211      11234557788889988


Q ss_pred             EEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCC
Q psy13998        214 VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFK  293 (319)
Q Consensus       214 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~  293 (319)
                      ++.   +.++.+|.+++......      .....+.+++++++|.+|++.. ++.|..++.+|+.+..+.      ....
T Consensus       192 v~t---~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~------~~~~  255 (330)
T 3hxj_A          192 FGS---DKVYAINPDGTEKWNFY------AGYWTVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFK------TGKR  255 (330)
T ss_dssp             EES---SSEEEECTTSCEEEEEC------CSSCCCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEE------CSSC
T ss_pred             EEe---CEEEEECCCCcEEEEEc------cCCcceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEee------CCCC
Confidence            877   78999998887776663      2224467889999999988865 578999998888877663      2223


Q ss_pred             CcceEEEccCCcEEEEeCC
Q psy13998        294 GLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       294 ~~~~l~~~~~g~~~v~~~~  312 (319)
                      .+..+.++++|++|++...
T Consensus       256 ~~~~~~~~~~g~l~v~t~~  274 (330)
T 3hxj_A          256 IESSPVIGNTDTIYFGSYD  274 (330)
T ss_dssp             CCSCCEECTTSCEEEECTT
T ss_pred             ccccceEcCCCeEEEecCC
Confidence            3456777878888876654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.38  E-value=2.4e-10  Score=90.66  Aligned_cols=193  Identities=15%  Similarity=0.239  Sum_probs=124.7

Q ss_pred             CCCCcceEEcCCCcEEEEeC------------CCCeEEEeccccccccc--e--eeE--E--e----cCceeeEEcC--C
Q psy13998         55 FTWPRGIAVGPDNSIVVADS------------SNHRVQVCFPHFDLKTN--C--VFL--A--F----TWPRGIAVGP--D  108 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~------------~~~~v~~~~~~~~~~~~--~--~~~--~--~----~~~~~l~~~~--~  108 (319)
                      ...+..|++.++|.+|++++            .+|.|.+    ++..+.  .  .+.  .  +    -.|+++.+.+  +
T Consensus        49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~----~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILL----MDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             CSCCCEEEECTTSEEEEEECCC-----------CCEEEE----EETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEE----EecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            35789999999999888872            6889999    665421  1  111  1  1    1788998865  3


Q ss_pred             C--cEEEEcCC--CCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----------------C
Q psy13998        109 N--SIVVADSS--NHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----------------N  165 (319)
Q Consensus       109 g--~~~~~~~~--~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----------------~  165 (319)
                      +  .+|++...  +.+|.+|+  .++.....+....  ......|++++++++|.+|++...                 .
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~--g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR--HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC--CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc--cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence            5  47777655  45555555  5555443332221  124578999999999999998651                 2


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC--CCEE--EEeCCCCC
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN--GRVI--TSFGSEGS  240 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~--~~~~--~~~~~~~~  240 (319)
                      +.++.++..        +.. ..      ......|++++++|++ .+|++++..++|++|+.+  +...  +.+.    
T Consensus       203 g~vyr~d~~--------~~~-~~------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~----  263 (355)
T 3sre_A          203 SFVTYYSPN--------DVR-VV------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS----  263 (355)
T ss_dssp             EEEEEECTT--------CCE-EE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----
T ss_pred             cEEEEEECC--------eEE-Ee------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----
Confidence            456666542        111 11      2234679999999998 688999989999999953  4332  2221    


Q ss_pred             CcccccCcceEEEcC-CCcEEEEeC-CCCEEEEEcCC
Q psy13998        241 EEGQLKFPRGVAVDD-QGYISVGDS-GNNRIQIFTPD  275 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~-~g~~~v~~~-~~~~i~~~~~~  275 (319)
                         ....|.++++++ +|++|+++. ...+|..|+++
T Consensus       264 ---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          264 ---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             ---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             ---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence               124689999999 599999764 33455555544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.38  E-value=4e-10  Score=88.95  Aligned_cols=210  Identities=13%  Similarity=0.158  Sum_probs=126.1

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCC----CeEEEEe--CCCCEE
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNT----NRVIVSD--SNNHRV  168 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~--~~~~~i  168 (319)
                      .+..|.+|++.|+|++|++....++|++++.+ ++.......+.........+.+|+++|+    +.+|++-  ...++|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            46789999999999999998778899999854 5432221111111223457799999984    7888753  345788


Q ss_pred             EEEecCCc-----eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-------------CCCeEEEEeCCCC
Q psy13998        169 QIFDVNGR-----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------------NNHRVQIFDVNGR  230 (319)
Q Consensus       169 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-------------~~~~i~~~~~~~~  230 (319)
                      ..|...+.     .......++..+..     ........|+++|+|.+|++..             ..+.|.+++++|.
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~-----~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPK-----GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECC-----CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCC-----CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            88877641     11101111222211     1223456799999999999853             2478888888775


Q ss_pred             EE--------EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC---CEEEEEcCCCce---EEeec--ccCCC------
Q psy13998        231 VI--------TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN---NRIQIFTPDGQF---LRAFG--CWGSG------  288 (319)
Q Consensus       231 ~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~---~~i~~~~~~g~~---~~~~~--~~~~~------  288 (319)
                      ..        ..+      ...+..|.+++++|+|.+|++....   ..|......+..   ...-.  ..+..      
T Consensus       185 ip~~nPf~~~~i~------a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~  258 (347)
T 3das_A          185 PAPGNPFPGSPVY------SYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW  258 (347)
T ss_dssp             BCTTCSSTTCCEE------EBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred             ccCCCCCCCCeEE------eeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence            21        111      1234568999999999999998754   345554432211   00000  00000      


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      ..+...|.+|+|. +|.+|++.-..++|.
T Consensus       259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~  286 (347)
T 3das_A          259 STDEASPSGIAYA-EGSVWMAGLRGERLW  286 (347)
T ss_dssp             CTTTCCEEEEEEE-TTEEEEEESTTCSEE
T ss_pred             CCCCCCCcceEEE-cCceeeccccCCEEE
Confidence            0111367889887 578888877666553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.38  E-value=2.1e-10  Score=85.93  Aligned_cols=190  Identities=14%  Similarity=0.134  Sum_probs=128.1

Q ss_pred             CcceEEcCCCcEEEEeCCCC--eEEEeccccccccceeeEEec---Cc--eeeEEcCCCcEEEEcCCCCeEEEEc-CCCc
Q psy13998         58 PRGIAVGPDNSIVVADSSNH--RVQVCFPHFDLKTNCVFLAFT---WP--RGIAVGPDNSIVVADSSNHRVQVFQ-SDGT  129 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~---~~--~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~  129 (319)
                      ..+|.++ ++.+|++.+.++  .|++    +|+.+++......   .+  .++++. .+++|++...++.+.+|| .+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~----vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRK----VDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEE----ECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEE----EECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCc
Confidence            3889998 788999887665  8999    9998888777554   22  456665 357999988899999999 6788


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      .+.++...+       ...+++.+ .+.+|++++ +++|.++|..+.      +.+..+..... ......++.+.+. +
T Consensus       119 ~~~ti~~~~-------eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~------~v~~~I~V~~~-g~~~~~lNELe~~-~  181 (262)
T 3nol_A          119 QVRSFNYDG-------EGWGLTHN-DQYLIMSDG-TPVLRFLDPESL------TPVRTITVTAH-GEELPELNELEWV-D  181 (262)
T ss_dssp             EEEEEECSS-------CCCCEEEC-SSCEEECCS-SSEEEEECTTTC------SEEEEEECEET-TEECCCEEEEEEE-T
T ss_pred             EEEEEECCC-------CceEEecC-CCEEEEECC-CCeEEEEcCCCC------eEEEEEEeccC-CccccccceeEEE-C
Confidence            888885431       22556543 346777764 788999998853      33333322100 0112334556665 7


Q ss_pred             CcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC------cccccCcceEEEcCCC-cEEEEeCCCCEEE
Q psy13998        210 NRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE------EGQLKFPRGVAVDDQG-YISVGDSGNNRIQ  270 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~  270 (319)
                      |++|+....++.|.++|+ +|+.+..+...+..      ......+++||++|++ ++||++-.=..++
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~  250 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF  250 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence            899999988999999996 67777777443211      1123467999999975 6888875433333

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.37  E-value=9.9e-11  Score=94.03  Aligned_cols=215  Identities=11%  Similarity=0.106  Sum_probs=126.3

Q ss_pred             CCCcceEEcCCCcEEEEeC---------CCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCC-----CCeE
Q psy13998         56 TWPRGIAVGPDNSIVVADS---------SNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSS-----NHRV  121 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i  121 (319)
                      ..+..+.+  +|+.++...         .+..|.+    ++..+... ..+..+..++|+|+|+.++....     ...|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~----~d~~~~~~-~~l~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVI----ENLKNNAR-RFIENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEE----EETTTCCE-EEEESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEE----EeCCCCce-EEcccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            44556667  676443321         2456777    77765443 33466788999999975544322     2358


Q ss_pred             EEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC---------------------------CCEEEEEecC
Q psy13998        122 QVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------------------------NHRVQIFDVN  174 (319)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~---------------------------~~~i~~~~~~  174 (319)
                      ++++.++.....+..     .. . +..++|+|+|+.++....                           ...|.+|++.
T Consensus        88 ~~~~~~~g~~~~l~~-----~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~  160 (347)
T 2gop_A           88 WVADLETLSSKKILE-----AK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE  160 (347)
T ss_dssp             EEEETTTTEEEEEEE-----ES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred             EEEECCCCceEEEEc-----CC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence            888855443333321     11 2 688999999975554331                           2568888876


Q ss_pred             CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC---------CCeEEEEeCCCCEEEEeCCCCCCcccc
Q psy13998        175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------NHRVQIFDVNGRVITSFGSEGSEEGQL  245 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~  245 (319)
                      +.      +.+..+..       . ....++++|+| ++++...         ...|++++ .++. ..+.      .+ 
T Consensus       161 ~~------~~~~~l~~-------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~------~~-  216 (347)
T 2gop_A          161 SE------EVIEEFEK-------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMF------EK-  216 (347)
T ss_dssp             TT------EEEEEEEE-------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEE------EE-
T ss_pred             CC------eEEeeecC-------C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCce-EEec------cC-
Confidence            53      22122211       1 35678899999 7666532         23677788 5543 3331      11 


Q ss_pred             cCcceEEEcCCCcEE-EEeCC-------CCEEEEEcCCCceEEeecccCCCCCCCCCcce-EEEccCCcEEEEeCCCCeE
Q psy13998        246 KFPRGVAVDDQGYIS-VGDSG-------NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG-VAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~-v~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~~g~~~v~~~~~~~i  316 (319)
                      .....  ++|+|+.+ ++...       ...|++|+ .++.....      ..+...+.. ++|+ || +++++..++.+
T Consensus       217 ~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~------~~~~~~~~~~~~~s-dg-~~~~~~~~~~~  285 (347)
T 2gop_A          217 VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGIL------DEVDRGVGQAKIKD-GK-VYFTLFEEGSV  285 (347)
T ss_dssp             ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESS------TTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred             cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEecc------ccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence            22222  38898644 44332       35899999 66654433      233345665 8898 88 88888888888


Q ss_pred             EeC
Q psy13998        317 QVF  319 (319)
Q Consensus       317 ~v~  319 (319)
                      ++|
T Consensus       286 ~l~  288 (347)
T 2gop_A          286 NLY  288 (347)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.36  E-value=1.8e-10  Score=91.36  Aligned_cols=189  Identities=13%  Similarity=0.244  Sum_probs=121.5

Q ss_pred             CceeeEEcCCCcEEEEc------------CCCCeEEEEcCCC--cEEEEecCCCc-cCCCCCCceeEEEeC--CC--eEE
Q psy13998         99 WPRGIAVGPDNSIVVAD------------SSNHRVQVFQSDG--TFVGKFGSMGN-KAGQLEHPHYIAVSN--TN--RVI  159 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~------------~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~~~~--~g--~~~  159 (319)
                      .+.++++.++|.+|++.            ..++.|.++|.+.  .....+...+. .....-.|+++.+.+  ++  ++|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45667777777776665            2578899999542  12233332221 111234789999866  45  578


Q ss_pred             EEeCC--CCEEEEEecC--CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------------C
Q psy13998        160 VSDSN--NHRVQIFDVN--GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------N  218 (319)
Q Consensus       160 ~~~~~--~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------------~  218 (319)
                      +++..  +.++.+|+.+  +...    ..+..+.     ......|+.++++++|.+|+++.                 .
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~----~~~~~~~-----g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~  201 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSL----LHLKTIR-----HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  201 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEE----EEEEEEC-----CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred             EEECCCCCCeEEEEEEECCCCEE----EEEeccc-----cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence            88765  4566666543  2211    1222221     12456799999999999998865                 2


Q ss_pred             CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC--CCceE--EeecccCCCCCCCC
Q psy13998        219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP--DGQFL--RAFGCWGSGDGEFK  293 (319)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~--~g~~~--~~~~~~~~~~~~~~  293 (319)
                      .+.|+.+++. + ++.+      ...+..|++|+++||+ .+|++++..++|++|+.  +|+..  +.+.       ...
T Consensus       202 ~g~vyr~d~~-~-~~~~------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-------~~g  266 (355)
T 3sre_A          202 WSFVTYYSPN-D-VRVV------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-------FDT  266 (355)
T ss_dssp             CEEEEEECTT-C-CEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-------CSS
T ss_pred             ccEEEEEECC-e-EEEe------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-------CCC
Confidence            4678888874 2 2223      3456789999999998 58999999999999994  34432  2221       135


Q ss_pred             CcceEEEcc-CCcEEEEeC
Q psy13998        294 GLEGVAVMS-NGNILVCDR  311 (319)
Q Consensus       294 ~~~~l~~~~-~g~~~v~~~  311 (319)
                      .|.++++++ +|++|+++.
T Consensus       267 ~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          267 LVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEE
T ss_pred             CCceEEEeCCCCcEEEEec
Confidence            799999999 599999764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.36  E-value=3.5e-10  Score=84.73  Aligned_cols=185  Identities=10%  Similarity=0.065  Sum_probs=127.8

Q ss_pred             CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-c-Cc--eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEE
Q psy13998         58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-T-WP--RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVG  132 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~--~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~  132 (319)
                      ..+|.++ ++.+|++.+.++.|++    +|+.+++..... . .+  .++++.. +++|++...++.+.+|| .+.+.+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~----iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQ----LSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEE----CCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEE----EECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            4789997 5789999999999999    898887766544 2 22  4577753 57999988899999999 6778888


Q ss_pred             EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV  212 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  212 (319)
                      ++...       ....+++.+ .+.+|+++ .+++|.++|..+.      +.+..+..... ......++.+.+. +|++
T Consensus       131 ti~~~-------~eGwGLt~D-g~~L~vSd-Gs~~l~~iDp~T~------~v~~~I~V~~~-g~~v~~lNeLe~~-dG~l  193 (268)
T 3nok_A          131 TTRYS-------GEGWGLCYW-NGKLVRSD-GGTMLTFHEPDGF------ALVGAVQVKLR-GQPVELINELECA-NGVI  193 (268)
T ss_dssp             EEECS-------SCCCCEEEE-TTEEEEEC-SSSEEEEECTTTC------CEEEEEECEET-TEECCCEEEEEEE-TTEE
T ss_pred             EEeCC-------CceeEEecC-CCEEEEEC-CCCEEEEEcCCCC------eEEEEEEeCCC-CcccccccccEEe-CCEE
Confidence            88542       123566654 35677777 5889999998854      33333322110 1122345666665 7899


Q ss_pred             EEEeCCCCeEEEEeC-CCCEEEEeCCCCC-------CcccccCcceEEEcCCC-cEEEEeCC
Q psy13998        213 IVSDSNNHRVQIFDV-NGRVITSFGSEGS-------EEGQLKFPRGVAVDDQG-YISVGDSG  265 (319)
Q Consensus       213 ~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g-~~~v~~~~  265 (319)
                      |+.....+.|.++|+ +|+.+..+...+.       ......-+++||++|++ ++|+++-.
T Consensus       194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            999888899999996 6777777643211       01123467999999974 78888753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.35  E-value=1.5e-09  Score=89.86  Aligned_cols=152  Identities=12%  Similarity=0.235  Sum_probs=94.9

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeEEec----------CceeeEEcC----CCcEEEEcCC-
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFLAFT----------WPRGIAVGP----DNSIVVADSS-  117 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~----------~~~~l~~~~----~g~~~~~~~~-  117 (319)
                      +..|++|++.|+|++||+....++|++    ++..+..  .+..+.          .+.+|+++|    ++.+|++.+. 
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~----~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~  101 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILR----VNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK  101 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEE----EECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence            789999999999999999887778888    5543221  122222          345899999    5778888643 


Q ss_pred             -----------CCeEEEEcCCC---cE--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----------------
Q psy13998        118 -----------NHRVQVFQSDG---TF--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----------------  164 (319)
Q Consensus       118 -----------~~~i~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----------------  164 (319)
                                 ...|..++.+.   +.  ...+.. .......+.+..|+|+++|++|++.+.                 
T Consensus       102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~-~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~  180 (454)
T 1cru_A          102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLA-GLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQH  180 (454)
T ss_dssp             CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEE-EECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTC
T ss_pred             ccCCCccccccccEEEEEEECCCCCCcCCcEEEEE-cCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccc
Confidence                       34688777321   11  111110 001122356899999999999998543                 


Q ss_pred             ---------------CCEEEEEecCCceeeecCce-----eeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC
Q psy13998        165 ---------------NHRVQIFDVNGRVFQSDGTF-----VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN  218 (319)
Q Consensus       165 ---------------~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  218 (319)
                                     .++|..++.+|.+.. +..+     ...+      ......|.+++++++|.+|+++..
T Consensus       181 ~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~-~Npf~~~~~~ei~------a~G~RNp~gla~dp~G~L~~~d~g  247 (454)
T 1cru_A          181 TPTQQELNGKDYHTYMGKVLRLNLDGSIPK-DNPSFNGVVSHIY------TLGHRNPQGLAFTPNGKLLQSEQG  247 (454)
T ss_dssp             CCCHHHHHTTCCTTCSSEEEEECTTSCCCT-TCCEETTEECSEE------EBCCSEEEEEEECTTSCEEEEEEC
T ss_pred             ccccccccccCCCCCCeeEEEEeCCCCCCC-CCCCCCCCcceEE------EECCCCcceEEECCCCCEEEEecC
Confidence                           256777776653210 0000     0011      123467899999999999999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.33  E-value=5.4e-11  Score=99.32  Aligned_cols=227  Identities=12%  Similarity=0.119  Sum_probs=139.3

Q ss_pred             CCc-EEEEeCCCCeEEEeccccccccceeeE--Ee---cCceeeEE-c-CCCcEEEEc------------------CCCC
Q psy13998         66 DNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--AF---TWPRGIAV-G-PDNSIVVAD------------------SSNH  119 (319)
Q Consensus        66 ~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~---~~~~~l~~-~-~~g~~~~~~------------------~~~~  119 (319)
                      ||+ +|+++..+.+|.+    .|+.+.+...  .+   ..|.++++ . |+++.++++                  ..++
T Consensus       100 DG~~lfVnd~~~~rVav----Idl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVAR----VRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEETTTTEEEE----EETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCEEEEEcCCCCEEEE----EECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            666 7888888999999    8888777555  43   36889998 4 787654444                  2345


Q ss_pred             eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CC--------------CEEEEEecCCce-eeecC
Q psy13998        120 RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN--------------HRVQIFDVNGRV-FQSDG  182 (319)
Q Consensus       120 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~--------------~~i~~~~~~~~~-~~~~~  182 (319)
                      .+.++| .+.+...++...       ..|..++++++|++.++.+ ..              ..+.++|..... ...+|
T Consensus       176 ~vtvID~~t~~v~~qI~Vg-------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVS-------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             EEEEEETTTTEEEEEEEES-------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             eEEEEECCCCeEEEEEEeC-------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence            788888 445666666432       2468899999987655544 32              335555542110 00011


Q ss_pred             ce-----eeeeccc---CCc----CCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC-------------EEEEeC
Q psy13998        183 TF-----VGKFGSM---GNK----AGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR-------------VITSFG  236 (319)
Q Consensus       183 ~~-----~~~~~~~---~~~----~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~-------------~~~~~~  236 (319)
                      +.     +..+...   +..    ......|.++.++|||+ +|+++..++.|.++|.+..             ..... 
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-  327 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-  327 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-
Confidence            10     1111000   000    01124689999999996 5677778899999997632             22222 


Q ss_pred             CCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-----------CceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        237 SEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-----------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       237 ~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                            .-...|..++|+++|+.|++...++.|.+|+.+           .+.+..+.. +..++|.....++.++|||+
T Consensus       328 ------~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk  400 (595)
T 1fwx_A          328 ------ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATND  400 (595)
T ss_dssp             ------BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSS
T ss_pred             ------CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCC
Confidence                  122468999999999999999999999999943           244544421 11112333346667889999


Q ss_pred             E-EEEeC
Q psy13998        306 I-LVCDR  311 (319)
Q Consensus       306 ~-~v~~~  311 (319)
                      + |+++.
T Consensus       401 ~l~~~Nk  407 (595)
T 1fwx_A          401 WLVCLSK  407 (595)
T ss_dssp             EEEEEES
T ss_pred             EEEEcCC
Confidence            4 44443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.31  E-value=4.5e-11  Score=97.78  Aligned_cols=222  Identities=8%  Similarity=-0.039  Sum_probs=120.9

Q ss_pred             CCCCcceEEcCCCcEEEEe-C--CCCeEEEeccccccccceeeEEec---C-ceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         55 FTWPRGIAVGPDNSIVVAD-S--SNHRVQVCFPHFDLKTNCVFLAFT---W-PRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~-~--~~~~v~~~~~~~~~~~~~~~~~~~---~-~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      ...+..++++|+|+.++.. .  .+..|.+    ++..+........   . ...+.|+|+|+.++....++.|++|+..
T Consensus        35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~----~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYL----LNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CCCTTSCCBCTTSCEEEEEECTTSSCEEEE----EETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred             ceeeecCcCCCCCCEEEEEEecCCCceEEE----EECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence            3457889999999965544 2  2346777    7776554332111   1 1237899999877666666789999954


Q ss_pred             -CcEEEEecCCCccCCCCCCce--e----------------EEEeCCCeEEEEe-----CCCCEEEEEecCCceeeecCc
Q psy13998        128 -GTFVGKFGSMGNKAGQLEHPH--Y----------------IAVSNTNRVIVSD-----SNNHRVQIFDVNGRVFQSDGT  183 (319)
Q Consensus       128 -~~~~~~~~~~~~~~~~~~~~~--~----------------l~~~~~g~~~~~~-----~~~~~i~~~~~~~~~~~~~~~  183 (319)
                       ++.........    . ..+.  .                ..++|+++.++..     ..+..|.+||+.+.      +
T Consensus       111 ~~~~~~~~~~~~----~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g------~  179 (396)
T 3c5m_A          111 TLEEQVIYTVDE----E-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG------E  179 (396)
T ss_dssp             TCCEEEEEECCT----T-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC------C
T ss_pred             CCCcEEEEeccc----c-cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC------c
Confidence             44333322110    0 0000  0                1234555433221     34567888888653      2


Q ss_pred             eeeeecccCCcCCCCCCceeEEEcC-CCc-EEEEeCC-C----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998        184 FVGKFGSMGNKAGQLEHPHYIAVSN-TNR-VIVSDSN-N----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~v~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                      .....       ........++++| ++. ++++... .    ..|++++.++.....+...    .....+..++|+|+
T Consensus       180 ~~~~~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~~~~spd  248 (396)
T 3c5m_A          180 LEVIH-------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH----AEGESCTHEFWIPD  248 (396)
T ss_dssp             EEEEE-------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC----CTTEEEEEEEECTT
T ss_pred             EEeec-------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc----CCCccccceEECCC
Confidence            21111       1123356688999 675 4444332 2    4799999876554444210    01123567899999


Q ss_pred             CcE-EEEeC--CC--CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEcc-CCcEEEEe
Q psy13998        257 GYI-SVGDS--GN--NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS-NGNILVCD  310 (319)
Q Consensus       257 g~~-~v~~~--~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~v~~  310 (319)
                      |+. +++..  ..  +.|++|+..+.....+...   .    ... ++++| ||++++..
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~----~~~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P----PCS-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C----SEE-EEEECSSSSEEEEE
T ss_pred             CCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C----CCC-CCccCCCCceEEEe
Confidence            974 44322  22  4499999643332222110   1    122 78999 99977654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.29  E-value=2.6e-10  Score=101.03  Aligned_cols=193  Identities=11%  Similarity=-0.009  Sum_probs=113.4

Q ss_pred             ceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---------CEEE
Q psy13998        100 PRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---------HRVQ  169 (319)
Q Consensus       100 ~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---------~~i~  169 (319)
                      ...+.|+|+|++++++  ++.|++|+ .+++....+..... ........+++++|||+.++..+.+         +.+.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh-hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            4578999999888776  88999999 55665544432110 0111122458899999877766543         5567


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccc-----
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ-----  244 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----  244 (319)
                      +||+.+...      . .+      ..+.......+++|+|+.++.. .++.|++|+..+....++...+.....     
T Consensus        96 ~~d~~~~~~------~-~l------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~  161 (740)
T 4a5s_A           96 IYDLNKRQL------I-TE------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (740)
T ss_dssp             EEETTTTEE------C-CS------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             EEECCCCcE------E-Ec------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence            899886422      1 11      1222345778999999766554 367899999755444444322211000     


Q ss_pred             --------ccCcceEEEcCCCcEEEEeCCC------------------------------------CEEEEEcCCC---c
Q psy13998        245 --------LKFPRGVAVDDQGYISVGDSGN------------------------------------NRIQIFTPDG---Q  277 (319)
Q Consensus       245 --------~~~~~~i~~~~~g~~~v~~~~~------------------------------------~~i~~~~~~g---~  277 (319)
                              +....+++|+|||+.++..+.+                                    ..|++|+.++   .
T Consensus       162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~  241 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred             cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence                    1223468999999866554211                                    1577777554   3


Q ss_pred             ---eEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        278 ---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       278 ---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                         ....+..+....++...+..++|+|||++++.
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~  276 (740)
T 4a5s_A          242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (740)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEE
Confidence               22333110000024556788999999995443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.28  E-value=5.8e-10  Score=98.07  Aligned_cols=218  Identities=11%  Similarity=-0.030  Sum_probs=124.4

Q ss_pred             CCcceEEcCCCcEEE-----EeCCCCeEEEeccccccccceee-E-EecCc--eeeEEcCCCcEEEEcCCCC--------
Q psy13998         57 WPRGIAVGPDNSIVV-----ADSSNHRVQVCFPHFDLKTNCVF-L-AFTWP--RGIAVGPDNSIVVADSSNH--------  119 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~-----~~~~~~~v~~~~~~~~~~~~~~~-~-~~~~~--~~l~~~~~g~~~~~~~~~~--------  119 (319)
                      .+.+++|+|||++++     .++.+..|++    |++.+++.. . .+...  .+++|+|||+.++..+.+.        
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v----~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHV----IDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEE----EETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEE----EECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            467899999999766     3334578999    888776654 2 23333  6899999998665554443        


Q ss_pred             -----eEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC----EEEEEecCCceeeecCceeee
Q psy13998        120 -----RVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH----RVQIFDVNGRVFQSDGTFVGK  187 (319)
Q Consensus       120 -----~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~  187 (319)
                           .|++|+.. +.  ....+..    ..+.....++.++|+|+.++....++    .|.+++..+.      .+...
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~------~~~~l  267 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHER----TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK------DFRLL  267 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECC----CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS------SCEEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEec----CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC------ceEEe
Confidence                 39999954 32  1222211    12223457889999997666544333    5666654321      11111


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCcEEEEeC---CCCeEEEEeCCC-CE---EEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNG-RV---ITSFGSEGSEEGQLKFPRGVAVDDQGYIS  260 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---~~~~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~~  260 (319)
                      .       .+........+ ++|.+|+...   .++.|++|+.++ ..   ...+.     ......+.+++++ ++.++
T Consensus       268 ~-------~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-----~~~~~~l~~~~~~-~~~lv  333 (695)
T 2bkl_A          268 V-------KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-----EDSSASLLSVSIV-GGHLS  333 (695)
T ss_dssp             E-------ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-----CCSSCEEEEEEEE-TTEEE
T ss_pred             e-------cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec-----CCCCCeEEEEEEE-CCEEE
Confidence            1       01111223333 4555666554   358899999753 21   22221     0111234567777 66788


Q ss_pred             EEeCCCCEEEEE--cCCCceEEeecccCCCCCCCCCcceEEEccCCcEE
Q psy13998        261 VGDSGNNRIQIF--TPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL  307 (319)
Q Consensus       261 v~~~~~~~i~~~--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  307 (319)
                      ++...++...+|  +.+|+..+.+..     .....+.++++++++..+
T Consensus       334 ~~~~~dg~~~l~~~~~~g~~~~~l~~-----~~~~~v~~~~~s~d~~~l  377 (695)
T 2bkl_A          334 LEYLKDATSEVRVATLKGKPVRTVQL-----PGVGAASNLMGLEDLDDA  377 (695)
T ss_dssp             EEEEETTEEEEEEEETTCCEEEECCC-----SSSSEECCCBSCTTCSEE
T ss_pred             EEEEECCEEEEEEEeCCCCeeEEecC-----CCCeEEEEeecCCCCCEE
Confidence            888777765555  556776665521     113345667777777633

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.28  E-value=3.8e-09  Score=78.55  Aligned_cols=194  Identities=13%  Similarity=0.144  Sum_probs=130.4

Q ss_pred             CCCcceEEcCCCcEEEEeCCC--CeEEEeccccccccceeeEEec---Cc--eeeEEcCCCcEEEEcCCCCeEEEEc-CC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSN--HRVQVCFPHFDLKTNCVFLAFT---WP--RGIAVGPDNSIVVADSSNHRVQVFQ-SD  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~---~~--~~l~~~~~g~~~~~~~~~~~i~~~~-~~  127 (319)
                      ....++.|+. +.+|.+.+..  ..|++    +|+.+++......   .+  .++++. .+++|+....++.+.+|| .+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~----vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRK----VDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEE----EETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEE----EECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCc
Confidence            3457899985 7899988765  48999    9998888777554   22  456665 367999988899999999 57


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      .+.+.++...       ....+++.+ .+.+|++++ +++|.++|..+.      +.+.++..... ......++.+.+.
T Consensus        95 l~~~~ti~~~-------~~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~------~~~~~I~V~~~-g~~~~~lNeLe~~  158 (243)
T 3mbr_X           95 LTPRARFRYP-------GEGWALTSD-DSHLYMSDG-TAVIRKLDPDTL------QQVGSIKVTAG-GRPLDNLNELEWV  158 (243)
T ss_dssp             TEEEEEEECS-------SCCCEEEEC-SSCEEEECS-SSEEEEECTTTC------CEEEEEECEET-TEECCCEEEEEEE
T ss_pred             CcEEEEEeCC-------CCceEEeeC-CCEEEEECC-CCeEEEEeCCCC------eEEEEEEEccC-CcccccceeeEEe
Confidence            7888887543       133566643 357888875 789999998853      33333322110 1112334555554


Q ss_pred             CCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC-------cccccCcceEEEcCCC-cEEEEeCCCCEEEEE
Q psy13998        208 NTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE-------EGQLKFPRGVAVDDQG-YISVGDSGNNRIQIF  272 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~  272 (319)
                       +|++|+....++.|.++|+ +|+.+..+...+..       .....-+++||++|++ ++|+++-.=..++..
T Consensus       159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v  231 (243)
T 3mbr_X          159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI  231 (243)
T ss_dssp             -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence             7899988888889999996 67777776533211       1123467999999975 688887543344433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.28  E-value=2.9e-09  Score=93.88  Aligned_cols=224  Identities=13%  Similarity=0.046  Sum_probs=127.4

Q ss_pred             CCcceEEcCCCcEEEEeCCC-----CeEEEeccccccccceeeE-Ee--cCceeeEEcCCCcEEEEcCCCC---------
Q psy13998         57 WPRGIAVGPDNSIVVADSSN-----HRVQVCFPHFDLKTNCVFL-AF--TWPRGIAVGPDNSIVVADSSNH---------  119 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~g~~~~~~~~~~---------  119 (319)
                      .+.+++|+|||++++.....     ..|++    |++.+++... ..  ....+++|+|||+.++....+.         
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v----~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKF----MKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEE----EETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEE----EECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            45688999999976644322     28999    8887766543 12  1356799999997554433332         


Q ss_pred             -------eEEEEcCCC-cE--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----CCEEEEEecCCceeeecCc-
Q psy13998        120 -------RVQVFQSDG-TF--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRVFQSDGT-  183 (319)
Q Consensus       120 -------~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~~~~~~~~~~-  183 (319)
                             .|++|+..+ ..  ...+..    ..+.....++.++|+|+.++....     +..|.++++.+......+. 
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~----~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEF----PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccCCCCEEEEEECCCCcccceEEecc----CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                   389998533 21  122211    112234568899999976654432     5689999876300000011 


Q ss_pred             eeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCC---CCeEEEEeCCCCE---EEEeCCCCCCcccccCcceEEEcCC
Q psy13998        184 FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSN---NHRVQIFDVNGRV---ITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~---~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                      ....+.      .+..... -.++++|. +++....   +..|++|+.++..   ...+...    .....+.+++++++
T Consensus       278 ~~~~l~------~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~  346 (710)
T 2xdw_A          278 KWVKLI------DNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRS  346 (710)
T ss_dssp             CCEEEE------CSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEETT
T ss_pred             ceEEee------CCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEcC
Confidence            111111      0111112 24666664 5555443   4579999975421   1222111    11123567888877


Q ss_pred             CcEEEEeCCCC--EEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        257 GYISVGDSGNN--RIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       257 g~~~v~~~~~~--~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      +.++++...++  +|++|+. +|+.++.+      ..+...+.++++++++.
T Consensus       347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l------~~~~~~v~~~~~s~d~~  392 (710)
T 2xdw_A          347 NFLVLCYLHDVKNTLQLHDLATGALLKIF------PLEVGSVVGYSGQKKDT  392 (710)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEE------CCCSSEEEEEECCTTCS
T ss_pred             CEEEEEEEECCEEEEEEEECCCCCEEEec------CCCCceEEEEecCCCCC
Confidence            78888877776  5677786 78777766      33345577788888876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.27  E-value=8e-10  Score=88.69  Aligned_cols=209  Identities=13%  Similarity=0.106  Sum_probs=119.4

Q ss_pred             CCCcceEEcCCCcEEEEeCCC---C--eEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcC-C----------
Q psy13998         56 TWPRGIAVGPDNSIVVADSSN---H--RVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADS-S----------  117 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~---~--~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~-~----------  117 (319)
                      ..+..++|+|+|+.++..+.+   +  .|.+    ++..++....  ....+..++|+|+|+.++... .          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~----~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWV----ADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEE----EETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC-------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEE----EECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            567789999999866554322   3  4666    6665544322  112267889999997444432 1          


Q ss_pred             ----------------CCeEEEEcCCCcEE-EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---------CEEEEE
Q psy13998        118 ----------------NHRVQVFQSDGTFV-GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---------HRVQIF  171 (319)
Q Consensus       118 ----------------~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---------~~i~~~  171 (319)
                                      ...|++|+..+... ..+..       . .+..++++|+| ++++...+         ..|..+
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~  205 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIW  205 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE-------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC-------C-CcccccCCCCe-EEEEEecccccccccccccEEEe
Confidence                            25788899544433 44421       1 45788999999 76665332         245556


Q ss_pred             ecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE-EEeCC-------CCeEEEEeCCCCEEEEeCCCCCCcc
Q psy13998        172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSN-------NHRVQIFDVNGRVITSFGSEGSEEG  243 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~  243 (319)
                      + .+.       .. .+..      . ....  .++|+|+.+ +....       ...|++|+ .++.. .+.     ..
T Consensus       206 d-~~~-------~~-~l~~------~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~-~l~-----~~  260 (347)
T 2gop_A          206 E-DGK-------EE-KMFE------K-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVM-GIL-----DE  260 (347)
T ss_dssp             E-TTE-------EE-EEEE------E-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEE-ESS-----TT
T ss_pred             C-CCc-------eE-Eecc------C-ccee--eECCCCCEEEEEEccccCCccccceEEEEC-CCceE-ecc-----cc
Confidence            6 332       11 1100      0 1112  237888644 44322       35799999 55543 331     12


Q ss_pred             cccCcce-EEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        244 QLKFPRG-VAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       244 ~~~~~~~-i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      +...+.. ++++ +| +++++..++.+.+| . +|+.....       .+...+.++++++  .++++.+.++
T Consensus       261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-------~~~~~v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-------KGRHWIMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-------CSSSEEEEEEESS--SEEEEEECSS
T ss_pred             CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-------cCCCeEEeeeeeC--cEEEEEcCCC
Confidence            2223444 7888 88 88888888877777 5 46554433       2244678889998  5555444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=1.7e-08  Score=90.01  Aligned_cols=231  Identities=8%  Similarity=0.054  Sum_probs=147.7

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE--------ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA--------FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      ..+.++..+++|++|+.... +-|..    ++..+.. ..+        ...+.++..+++|++|+... .+.+.+++..
T Consensus       363 ~~v~~i~~d~~g~lWigt~~-~Gl~~----~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~-~~Gl~~~~~~  435 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDG-GGINV----FENGKRV-AIYNKENRELLSNSVLCSLKDSEGNLWFGTY-LGNISYYNTR  435 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBS-SCEEE----EETTEEE-EECC-----CCCSBEEEEEECTTSCEEEEET-TEEEEEECSS
T ss_pred             cceEEEEEcCCCCEEEEeCC-CcEEE----EECCCCe-EEEccCCCCCCCcceEEEEECCCCCEEEEec-cCCEEEEcCC
Confidence            45788999999999987543 44667    5654322 111        12467788888899998653 4579999965


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      ......+...   ......+.++..+++|++|+...  +.+.+++..+.      ++....... ........+.++..+
T Consensus       436 ~~~~~~~~~~---~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~------~~~~~~~~~-~~~~~~~~i~~i~~d  503 (781)
T 3v9f_A          436 LKKFQIIELE---KNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASK------KVIHHYDTS-NSQLLENFVRSIAQD  503 (781)
T ss_dssp             SCEEEECCST---TTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSS------SCCEEECTT-TSSCSCSCEEEEEEC
T ss_pred             CCcEEEeccC---CCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCC------eEEecccCc-ccccccceeEEEEEc
Confidence            4444444321   11235678889999999999765  56888987653      221111110 001112457789999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCC
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS  287 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~  287 (319)
                      ++|++|++.... .+.+|+++......+....  .-....+.++..+++|++|++.. +|-|..|++....+..+.....
T Consensus       504 ~~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~~--~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~g  579 (781)
T 3v9f_A          504 SEGRFWIGTFGG-GVGIYTPDMQLVRKFNQYE--GFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEG  579 (781)
T ss_dssp             TTCCEEEEESSS-CEEEECTTCCEEEEECTTT--TCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGT
T ss_pred             CCCCEEEEEcCC-CEEEEeCCCCeEEEccCCC--CCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCC
Confidence            999999887644 4888998776666664211  11223567899999999999887 5544999976544444432110


Q ss_pred             CCCCCCCcceEEEccCCcEEEEeC
Q psy13998        288 GDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                        -....+.++..+++|+++++..
T Consensus       580 --l~~~~i~~i~~d~~g~lW~~t~  601 (781)
T 3v9f_A          580 --LPNTHIRAISEDKNGNIWASTN  601 (781)
T ss_dssp             --CSCCCCCEEEECSSSCEEEECS
T ss_pred             --CCCceEEEEEECCCCCEEEEcC
Confidence              1123478899999999998863

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.27  E-value=8.2e-10  Score=88.60  Aligned_cols=219  Identities=12%  Similarity=0.181  Sum_probs=126.1

Q ss_pred             EecCceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCC-ccCCCCCCceeEEEeC----CCeEEEEeCC-----
Q psy13998         96 AFTWPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMG-NKAGQLEHPHYIAVSN----TNRVIVSDSN-----  164 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~----~g~~~~~~~~-----  164 (319)
                      .+..|.+|+++|+|+ +|++.. .++|++++.+++....+.... ........+.+|+++|    ++.+|++...     
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            577999999999999 999876 589999987765432221110 0011234678999999    4888988653     


Q ss_pred             --CCEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeC
Q psy13998        165 --NHRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDV  227 (319)
Q Consensus       165 --~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~  227 (319)
                        ...|..++.+..  .+.....++..+..   .......+.+|+++|+|.+|++...             .+.|.++++
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~---~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~  171 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPK---LSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD  171 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSC---CBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCC---CCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence              346777766432  11100011111110   0112334678999999999998643             357999998


Q ss_pred             CCCEEEEeCC---CCCC----cccccCcceEEEcC-CCcEEEEeCCCC---EEEEEcCCCce---EEeec----------
Q psy13998        228 NGRVITSFGS---EGSE----EGQLKFPRGVAVDD-QGYISVGDSGNN---RIQIFTPDGQF---LRAFG----------  283 (319)
Q Consensus       228 ~~~~~~~~~~---~~~~----~~~~~~~~~i~~~~-~g~~~v~~~~~~---~i~~~~~~g~~---~~~~~----------  283 (319)
                      +|.....-.-   ....    ...+..|.++++++ +|++|+++....   .|.+....+..   ....+          
T Consensus       172 dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          172 QGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             TSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence            7752100000   0000    11234689999999 789999987532   45444322211   00000          


Q ss_pred             -----ccCCCC-----CCCCCcceEEEcc-------CCcEEEEeCCCCeEEe
Q psy13998        284 -----CWGSGD-----GEFKGLEGVAVMS-------NGNILVCDRENHRIQV  318 (319)
Q Consensus       284 -----~~~~~~-----~~~~~~~~l~~~~-------~g~~~v~~~~~~~i~v  318 (319)
                           ......     .+...|.++++..       +|++|+++...++|..
T Consensus       252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~  303 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIV  303 (353)
T ss_dssp             CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEE
Confidence                 000000     1123578888863       5789999988887753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.26  E-value=2.9e-08  Score=88.73  Aligned_cols=233  Identities=11%  Similarity=0.109  Sum_probs=146.9

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE------------ecCceeeEEcCCCc-EEEEcCCCCeEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------------FTWPRGIAVGPDNS-IVVADSSNHRVQ  122 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~g~-~~~~~~~~~~i~  122 (319)
                      ..+.++..+++|++|+... ++-|..    ++..+......            ...+.+++.+++|+ +|+... ++.+.
T Consensus       357 ~~V~~i~~d~~g~lWiGt~-~~Gl~~----~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~-~~Gl~  430 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGTN-DGGLNL----YNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH-AGGLS  430 (795)
T ss_dssp             SSEEEEEECTTSCEEEEES-SSCEEE----ECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET-TTEEE
T ss_pred             CeeEEEEECCCCCEEEEEC-CCCeEE----EcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC-cCcee
Confidence            4578899999999998654 445777    66543322110            12456788888999 888653 45699


Q ss_pred             EEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC-CcCCCCCCc
Q psy13998        123 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-NKAGQLEHP  201 (319)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  201 (319)
                      +++........+..... ......+.++..+++|++|+...  +.+.+|+..+..+.       .+.... ........+
T Consensus       431 ~~d~~~~~~~~~~~~~~-~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~-------~~~~~~~~~~~~~~~i  500 (795)
T 4a2l_A          431 ILHRNSGQVENFNQRNS-QLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFT-------TIEKEKDGTPVVSKQI  500 (795)
T ss_dssp             EEETTTCCEEEECTTTS-CCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEE-------ECCBCTTCCBCCCCCE
T ss_pred             EEeCCCCcEEEeecCCC-CcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEE-------EccccccccccCCceE
Confidence            99965444444432111 12234678899999999999875  45888988754322       111100 000112456


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC-CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEE
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE-GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR  280 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~  280 (319)
                      .++..+++|++|++..  +.+++|+...... .+... .........+.+|..+++|++|++...  .|..|++......
T Consensus       501 ~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~  575 (795)
T 4a2l_A          501 TTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIK  575 (795)
T ss_dssp             EEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCCcEE
Confidence            7888999999999876  4688999755444 44211 111112345778999999999998764  6899997665555


Q ss_pred             eecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                      .+.....  -....+.++..+++|+++++..
T Consensus       576 ~~~~~~g--l~~~~i~~i~~d~~g~lWi~t~  604 (795)
T 4a2l_A          576 RYNTTNG--LPNNVVYGILEDSFGRLWLSTN  604 (795)
T ss_dssp             EECGGGT--CSCSCEEEEEECTTSCEEEEET
T ss_pred             EeCCCCC--CchhheEEEEECCCCCEEEEcC
Confidence            5532111  1123578899999999998874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=7e-09  Score=92.48  Aligned_cols=237  Identities=12%  Similarity=0.016  Sum_probs=147.4

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      ..+.++..+++|++|+... ++.+..    ++..+.. +..+       ..+.++..+++|++|++..  +.+.+|+...
T Consensus       407 ~~v~~i~~d~~g~lWigt~-~~Gl~~----~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~  478 (781)
T 3v9f_A          407 NSVLCSLKDSEGNLWFGTY-LGNISY----YNTRLKK-FQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLAS  478 (781)
T ss_dssp             SBEEEEEECTTSCEEEEET-TEEEEE----ECSSSCE-EEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSS
T ss_pred             cceEEEEECCCCCEEEEec-cCCEEE----EcCCCCc-EEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCC
Confidence            4678888898999998654 456777    6665433 2222       2467888888999999875  5799999544


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      .....+............+.++..+++|++|+.....+ +.+|+.++..+       ..+....  .-....+.++..++
T Consensus       479 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-------~~~~~~~--~l~~~~i~~i~~d~  548 (781)
T 3v9f_A          479 KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-------RKFNQYE--GFCSNTINQIYRSS  548 (781)
T ss_dssp             SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-------EEECTTT--TCSCSCEEEEEECT
T ss_pred             CeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-------EEccCCC--CCCCCeeEEEEECC
Confidence            32222211111011135678899999999999765444 77788765322       1221110  01123567888899


Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCC
Q psy13998        209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG  288 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~  288 (319)
                      +|++|++.. .|.+..|++.......+.....  -....+.++..+++|++|+++.  +.|..|+++...+..+......
T Consensus       549 ~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~g--l~~~~i~~i~~d~~g~lW~~t~--~Gl~~~~~~~~~~~~~~~~dGl  623 (781)
T 3v9f_A          549 KGQMWLATG-EGLVCFPSARNFDYQVFQRKEG--LPNTHIRAISEDKNGNIWASTN--TGISCYITSKKCFYTYDHSNNI  623 (781)
T ss_dssp             TSCEEEEET-TEEEEESCTTTCCCEEECGGGT--CSCCCCCEEEECSSSCEEEECS--SCEEEEETTTTEEEEECGGGTC
T ss_pred             CCCEEEEEC-CCceEEECCCCCcEEEccccCC--CCCceEEEEEECCCCCEEEEcC--CceEEEECCCCceEEecccCCc
Confidence            999999876 5554999976554455432110  1123467899999999999863  4589999877666666432211


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      ........++..+++|++|+.+. +|-+
T Consensus       624 ~~~~f~~~~~~~~~~G~l~~g~~-~Gl~  650 (781)
T 3v9f_A          624 PQGSFISGCVTKDHNGLIYFGSI-NGLC  650 (781)
T ss_dssp             CSSCEEEEEEEECTTSCEEEEET-TEEE
T ss_pred             cccccccCceEECCCCEEEEECC-CceE
Confidence            11222245677889999888765 3443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.24  E-value=2.7e-08  Score=88.86  Aligned_cols=234  Identities=10%  Similarity=0.084  Sum_probs=148.0

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEE--------ecCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLA--------FTWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      ..+.++..+++|+ +|+... ++-+.+    ++..++.....        ...+.++..+++|++|++..  +.+.+|++
T Consensus       406 ~~v~~i~~d~~g~~lWigt~-~~Gl~~----~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~  478 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTH-AGGLSI----LHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNP  478 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEE----EETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEET
T ss_pred             ccEEEEEEcCCCCEEEEEeC-cCceeE----EeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeC
Confidence            4577888899999 888654 445777    67654332221        12467888888999999875  46899996


Q ss_pred             CCcEEEEecCCCcc-CCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc-CCcCCCCCCceeE
Q psy13998        127 DGTFVGKFGSMGNK-AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYI  204 (319)
Q Consensus       127 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  204 (319)
                      .......+...... ......+.++..+++|++|+...  +.+.+|+..+..      +  .+... .........+.++
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~------~--~~~~~~~~~~l~~~~i~~i  548 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD------I--QKASILPVSNVTKLFTNCI  548 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE------E--EECCCSCSCGGGGSCEEEE
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe------E--EEecCCCCCCCCCCeeEEE
Confidence            65544444321000 11224678899999999999876  458888876432      2  11100 0001112356788


Q ss_pred             EEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecc
Q psy13998        205 AVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGC  284 (319)
Q Consensus       205 ~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~  284 (319)
                      ..+++|+++++...  .+.+|++.......+.....  -....+.++..+++|++|+++.  +.|..|+++...+..+..
T Consensus       549 ~~d~~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~g--l~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~~~~~~~~~~~  622 (795)
T 4a2l_A          549 YEASNGIIWVGTRE--GFYCFNEKDKQIKRYNTTNG--LPNNVVYGILEDSFGRLWLSTN--RGISCFNPETEKFRNFTE  622 (795)
T ss_dssp             EECTTSCEEEEESS--CEEEEETTTTEEEEECGGGT--CSCSCEEEEEECTTSCEEEEET--TEEEEEETTTTEEEEECG
T ss_pred             EECCCCCEEEEeCC--CceeECCCCCcEEEeCCCCC--CchhheEEEEECCCCCEEEEcC--CceEEEcCCCCcEEEcCC
Confidence            88999999988764  68999987666666532111  0123467889999999999984  679999987666666633


Q ss_pred             cCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        285 WGSGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                      ............++..+++|++|+.+..
T Consensus       623 ~dGl~~~~f~~~~~~~~~~G~l~~g~~~  650 (795)
T 4a2l_A          623 SDGLQSNQFNTASYCRTSVGQMYFGGIN  650 (795)
T ss_dssp             GGTCSCSCEEEEEEEECTTSCEEEEETT
T ss_pred             cCCCccccCccCceeECCCCeEEEecCC
Confidence            2111111112356778899998887653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=2.5e-08  Score=80.72  Aligned_cols=197  Identities=11%  Similarity=0.112  Sum_probs=123.2

Q ss_pred             CCCcceEEcCCCcEEEEeCCC------CeEEEeccccccccceeeEEec-------CceeeEEcCCCcEEEEcC------
Q psy13998         56 TWPRGIAVGPDNSIVVADSSN------HRVQVCFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADS------  116 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~------  116 (319)
                      ..|+.+...|+| ++++..++      +.|.+    +|..+.+.+..+.       .+.++.++|+++.+++..      
T Consensus       138 s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v----lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~  212 (462)
T 2ece_A          138 SRLHTVHCGPDA-IYISALGNEEGEGPGGILM----LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNT  212 (462)
T ss_dssp             EEEEEEEECSSC-EEEEEEEETTSCSCCEEEE----ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred             CcccceeECCCe-EEEEcCCCcCCCCCCeEEE----EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccc
Confidence            478888999999 88887665      78999    8888777776554       134477799998777763      


Q ss_pred             -------------CCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEE--eCCCeE-EEEeC-----CCCEEEEEecC
Q psy13998        117 -------------SNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAV--SNTNRV-IVSDS-----NNHRVQIFDVN  174 (319)
Q Consensus       117 -------------~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~g~~-~~~~~-----~~~~i~~~~~~  174 (319)
                                   ..++|.+|| .+++.+.++....    ....|..+.+  +|++++ |+++.     .+++|.+|..+
T Consensus       213 ~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~----~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d  288 (462)
T 2ece_A          213 IEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE----ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE  288 (462)
T ss_dssp             HTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT----TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred             cccccchhhhhhccCCEEEEEECCCCcEeeEEecCC----CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence                         368999999 4566666664321    1134667766  888855 55555     66788776554


Q ss_pred             CceeeecCceeeeecc---cCCcC------C-CCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC----CCEEEEeCCCC
Q psy13998        175 GRVFQSDGTFVGKFGS---MGNKA------G-QLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN----GRVITSFGSEG  239 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~---~~~~~------~-~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~----~~~~~~~~~~~  239 (319)
                      ....... +.+. ...   .....      . ....|.+|.++++|+ +|++....+.|.+|+.+    .+.+..+...+
T Consensus       289 ~g~~~~~-~vId-i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG  366 (462)
T 2ece_A          289 DGKWNAE-KVIE-IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG  366 (462)
T ss_dssp             TTEEEEE-EEEE-ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT
T ss_pred             CCceeEE-EEEe-CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC
Confidence            3211100 1110 100   00000      0 024588999999984 77888889999999963    23444442221


Q ss_pred             CC--------cccccCcceEEEcCCCc-EEEEe
Q psy13998        240 SE--------EGQLKFPRGVAVDDQGY-ISVGD  263 (319)
Q Consensus       240 ~~--------~~~~~~~~~i~~~~~g~-~~v~~  263 (319)
                      ..        ......|..++++|||+ +|++.
T Consensus       367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            10        00112589999999996 56665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.17  E-value=7.1e-09  Score=86.74  Aligned_cols=187  Identities=11%  Similarity=0.080  Sum_probs=115.7

Q ss_pred             CCc-EEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEE-e-CCCeEEEEeC------------------CC
Q psy13998        108 DNS-IVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAV-S-NTNRVIVSDS------------------NN  165 (319)
Q Consensus       108 ~g~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~g~~~~~~~------------------~~  165 (319)
                      ||+ +|+++..+.+|.+.|.+ .+..+.+..+     ....|+++++ . |++++++++.                  .+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-----~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-----NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-----SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-----CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence            554 78888889999999954 4555534221     1246789998 4 7776655542                  23


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CC--------------CeEEEEeCC--
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN--------------HRVQIFDVN--  228 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~--------------~~i~~~~~~--  228 (319)
                      +.+.++|.++.      +...+....       ..|.+++++++|++.++.+ ..              ..|.+++..  
T Consensus       175 ~~vtvID~~t~------~v~~qI~Vg-------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~  241 (595)
T 1fwx_A          175 NVFTAVDADKW------EVAWQVLVS-------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  241 (595)
T ss_dssp             EEEEEEETTTT------EEEEEEEES-------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             ceEEEEECCCC------eEEEEEEeC-------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence            56778887743      444444221       1467789999986554443 32              224444311  


Q ss_pred             ------CCE-----EEEeCCCC---CC----cccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCc------------
Q psy13998        229 ------GRV-----ITSFGSEG---SE----EGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQ------------  277 (319)
Q Consensus       229 ------~~~-----~~~~~~~~---~~----~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~------------  277 (319)
                            |+.     +..+....   ..    ......|.++.++|||+ +|+++..+++|.++|.+..            
T Consensus       242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence                  110     11111110   00    01124688999999996 6777778999999995421            


Q ss_pred             -eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        278 -FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       278 -~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ....+       .....|..++|+++|..|++...++.|.+|
T Consensus       322 ~v~~~v-------~vG~gP~h~aF~~dG~aY~t~~ldsqV~kw  357 (595)
T 1fwx_A          322 AVVAEP-------ELGLGPLHTAFDGRGNAYTSLFLDSQVVKW  357 (595)
T ss_dssp             GEEECC-------BCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             ceEEEc-------CCCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence             22222       223469999999999999999999999877

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.13  E-value=1.5e-07  Score=74.95  Aligned_cols=245  Identities=12%  Similarity=0.072  Sum_probs=153.7

Q ss_pred             CCCcceEE-cCCCcEEEEeCC-----CCeEEEecccccccc-------ceee-E---------EecCceeeEEcCCCcEE
Q psy13998         56 TWPRGIAV-GPDNSIVVADSS-----NHRVQVCFPHFDLKT-------NCVF-L---------AFTWPRGIAVGPDNSIV  112 (319)
Q Consensus        56 ~~~~~v~~-~~~g~~~~~~~~-----~~~v~~~~~~~~~~~-------~~~~-~---------~~~~~~~l~~~~~g~~~  112 (319)
                      ..|.+|++ +.+|++|++-..     .-++..    .+..+       ...+ .         .+..+..+.+++.+++|
T Consensus        26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~----v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLW  101 (381)
T 3q6k_A           26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAE----VDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLW  101 (381)
T ss_dssp             CCCCEEEEETTTTEEEEECCTTSTTCSCSEEE----EEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEE
T ss_pred             cceeeeeeecCCCcEEEEeCCCCCCCCcEEEE----EeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEE
Confidence            56889999 689999998643     124444    22210       1112 2         35577889999999999


Q ss_pred             EEcCCC---------------CeEEEEc-CCC--cEEEEecCCCccCCCCCCceeEEEe-C-------CCeEEEEeCCCC
Q psy13998        113 VADSSN---------------HRVQVFQ-SDG--TFVGKFGSMGNKAGQLEHPHYIAVS-N-------TNRVIVSDSNNH  166 (319)
Q Consensus       113 ~~~~~~---------------~~i~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~-------~g~~~~~~~~~~  166 (319)
                      +.+.+.               -+|.+|| .++  ++++++..+............++++ .       ++..|+++....
T Consensus       102 VLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~  181 (381)
T 3q6k_A          102 VVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRG  181 (381)
T ss_dssp             EEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTT
T ss_pred             EEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCC
Confidence            997651               2688999 566  7888887654333333567889988 2       356799999999


Q ss_pred             EEEEEecCCceeee--cCcee----eeecccCCcCCCCCCceeEEEcCC----C-cEEEEeCCCCeEEEEeC----CC--
Q psy13998        167 RVQIFDVNGRVFQS--DGTFV----GKFGSMGNKAGQLEHPHYIAVSNT----N-RVIVSDSNNHRVQIFDV----NG--  229 (319)
Q Consensus       167 ~i~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----g-~~~v~~~~~~~i~~~~~----~~--  229 (319)
                      .|.++|+.......  ...+.    ..+...+..........+|+++|+    + .+|+.......++....    +.  
T Consensus       182 gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~  261 (381)
T 3q6k_A          182 ALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG  261 (381)
T ss_dssp             EEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC
T ss_pred             cEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch
Confidence            99999998643210  00000    000001111111246788999986    3 57777776667777652    11  


Q ss_pred             -CEEEEeCCCCCCcccccCcceEEEc-CCCcEEEEeCCCCEEEEEcCCC-ce----EEeecccCCCCCCCCCcceEEEcc
Q psy13998        230 -RVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDG-QF----LRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       230 -~~~~~~~~~~~~~~~~~~~~~i~~~-~~g~~~v~~~~~~~i~~~~~~g-~~----~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                       ..++.++..+    ......+++++ .+|.+|++....+.|..|+.++ ..    ...+..    .....+|.++.+++
T Consensus       262 ~~~v~~~G~kg----~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~----d~~l~~pd~~~i~~  333 (381)
T 3q6k_A          262 KLNPELLGNRG----KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT----SSRFVFGTDISVDS  333 (381)
T ss_dssp             CCCCEEEEECC----TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE----CTTCCSEEEEEECT
T ss_pred             hhceEEeeecC----CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE----CCCccccCeEEECC
Confidence             1222222110    01123456786 7899999999999999999877 22    233322    23677899999999


Q ss_pred             CCcEEEEeCC
Q psy13998        303 NGNILVCDRE  312 (319)
Q Consensus       303 ~g~~~v~~~~  312 (319)
                      +|.+|+....
T Consensus       334 ~g~Lwv~sn~  343 (381)
T 3q6k_A          334 KGGLWFMSNG  343 (381)
T ss_dssp             TSCEEEEECS
T ss_pred             CCeEEEEECc
Confidence            9998887754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.12  E-value=3.4e-09  Score=93.22  Aligned_cols=228  Identities=8%  Similarity=-0.041  Sum_probs=128.4

Q ss_pred             cccccCCCccchhcc-----ccceeeeecccCCCCC------cCCCC--cceEEcCCCcEEEEeCCCCe-----------
Q psy13998         23 GIGQVGTTPRSQYLQ-----KRRLQFKIGSRGSEPG------CFTWP--RGIAVGPDNSIVVADSSNHR-----------   78 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~------~~~~~--~~v~~~~~g~~~~~~~~~~~-----------   78 (319)
                      .+..+.+||++++++     .++....+..++...+      ++..+  .+++|+|||+.++..+.+..           
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            477888999999988     4443334433333222      33333  68999999997776665544           


Q ss_pred             --EEEeccccccccce----eeEEe----cCceeeEEcCCCcEEEEcCCCC----eEEEEcC-CCcEEEEecCCCccCCC
Q psy13998         79 --VQVCFPHFDLKTNC----VFLAF----TWPRGIAVGPDNSIVVADSSNH----RVQVFQS-DGTFVGKFGSMGNKAGQ  143 (319)
Q Consensus        79 --v~~~~~~~~~~~~~----~~~~~----~~~~~l~~~~~g~~~~~~~~~~----~i~~~~~-~~~~~~~~~~~~~~~~~  143 (319)
                        |++    |++.+..    .+...    ....++.++|+|+.++....++    .|++++. +++......       +
T Consensus       202 ~~v~~----~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-------~  270 (695)
T 2bkl_A          202 TTIRY----HTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-------G  270 (695)
T ss_dssp             CEEEE----EETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-------C
T ss_pred             CEEEE----EECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-------C
Confidence              999    7776544    22222    2446889999997555443333    7888874 444333221       1


Q ss_pred             CCCceeEEEeCCCeEEEEeC---CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC
Q psy13998        144 LEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH  220 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~  220 (319)
                      ........+ ++|.+|+...   .++.|.+|++++....   .....+.     ........+++++ ++.++++...++
T Consensus       271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~-----~~~~~~l~~~~~~-~~~lv~~~~~dg  340 (695)
T 2bkl_A          271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA---SWKEIVP-----EDSSASLLSVSIV-GGHLSLEYLKDA  340 (695)
T ss_dssp             SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG---GCEEEEC-----CCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred             CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc---CCeEEec-----CCCCCeEEEEEEE-CCEEEEEEEECC
Confidence            122234444 4555666554   3578999998642100   0111110     0001234556776 667888777666


Q ss_pred             eE--EEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-Ee---CCCCEEEEEcCCC
Q psy13998        221 RV--QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GD---SGNNRIQIFTPDG  276 (319)
Q Consensus       221 ~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~---~~~~~i~~~~~~g  276 (319)
                      ..  ++++.+|.....+...     ....+.++.+++++..++ +.   ...+.|+.||..+
T Consensus       341 ~~~l~~~~~~g~~~~~l~~~-----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          341 TSEVRVATLKGKPVRTVQLP-----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             EEEEEEEETTCCEEEECCCS-----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEEEeCCCCeeEEecCC-----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            54  4556667766555211     122345667788875433 32   2346899999643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.08  E-value=1.5e-08  Score=83.82  Aligned_cols=159  Identities=12%  Similarity=0.211  Sum_probs=101.3

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCcc--CCCCCCceeEEEeC----CCeEEEEeCC----
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNK--AGQLEHPHYIAVSN----TNRVIVSDSN----  164 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~----~g~~~~~~~~----  164 (319)
                      .+..|.+|++.|+|++|++....++|++++. +++...........  ......+.+|+++|    ++.+|++.+.    
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            3668999999999999999877678999984 45543222111100  11235667999999    6788888753    


Q ss_pred             --------CCEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC----------------
Q psy13998        165 --------NHRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN----------------  218 (319)
Q Consensus       165 --------~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~----------------  218 (319)
                              ...|..++.+..  .+.....++..+.     ......+..|+++++|+||++...                
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-----~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~  179 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-----SSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQ  179 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-----CCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTT
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-----CCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccc
Confidence                    346777765421  1111111122221     112345789999999999998542                


Q ss_pred             ----------------CCeEEEEeCCCCE-----------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        219 ----------------NHRVQIFDVNGRV-----------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       219 ----------------~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                                      .+.|.+++++|..           ...+      ...+..|.+++|+++|++|++...
T Consensus       180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~------a~G~RNp~gla~dp~G~L~~~d~g  247 (454)
T 1cru_A          180 HTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY------TLGHRNPQGLAFTPNGKLLQSEQG  247 (454)
T ss_dssp             CCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE------EBCCSEEEEEEECTTSCEEEEEEC
T ss_pred             cccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEE------EECCCCcceEEECCCCCEEEEecC
Confidence                            3678888887751           1111      123456899999999999999853

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.07  E-value=2.2e-08  Score=88.35  Aligned_cols=230  Identities=13%  Similarity=0.076  Sum_probs=131.2

Q ss_pred             cccccCCCccchhcccccee-----eeecccCCCCCcC-------CCCcceEEcCCCcEEEEeCCCCe------------
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQ-----FKIGSRGSEPGCF-------TWPRGIAVGPDNSIVVADSSNHR------------   78 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~-------~~~~~v~~~~~g~~~~~~~~~~~------------   78 (319)
                      .+..+.|||++++++.....     ..+..++...+..       ..+.+++|+|||+.++..+.++.            
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            46778899999987743321     2444444443332       12578999999996665544433            


Q ss_pred             ----EEEeccccccccce----eeEEec----CceeeEEcCCCcEEEEcCC-----CCeEEEEcCC-------Cc-EEEE
Q psy13998         79 ----VQVCFPHFDLKTNC----VFLAFT----WPRGIAVGPDNSIVVADSS-----NHRVQVFQSD-------GT-FVGK  133 (319)
Q Consensus        79 ----v~~~~~~~~~~~~~----~~~~~~----~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~-------~~-~~~~  133 (319)
                          |++    |++.+..    .+....    ...++.++|+|+.++....     +..|+++|.+       +. ....
T Consensus       206 ~~~~v~~----~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          206 LHQKLYY----HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCEEEE----EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             CCCEEEE----EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                888    7776543    221211    2458899999985544322     5689999954       32 2333


Q ss_pred             ecCCCccCCCCCCceeEEEeCCC-eEEEEeCC---CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        134 FGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSN---NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      +..      +...... .++++| .+++....   ...|.+|++.+....   .......     ........++++.++
T Consensus       282 l~~------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~-----~~~~~~~~~~~~~~~  346 (710)
T 2xdw_A          282 LID------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLVP-----EHEKDVLEWVACVRS  346 (710)
T ss_dssp             EEC------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEEC-----CCSSCEEEEEEEETT
T ss_pred             eeC------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceeccC-----CCCCCeEEEEEEEcC
Confidence            321      1112222 466766 45555443   347999998742100   0011110     001123456777777


Q ss_pred             CcEEEEeCCCC--eEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC---CCCEEEEEcCC-Cc
Q psy13998        210 NRVIVSDSNNH--RVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS---GNNRIQIFTPD-GQ  277 (319)
Q Consensus       210 g~~~v~~~~~~--~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~---~~~~i~~~~~~-g~  277 (319)
                      +.++++...++  .|++|+. +|+.+..+.      .+...+.++.+++++. ++++.+   ...+|+.||.. |+
T Consensus       347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          347 NFLVLCYLHDVKNTLQLHDLATGALLKIFP------LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEEC------CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCEEEEEEEECCCCCEEEecC------CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            78888776665  5778887 677666662      2233456778888875 444322   35789999953 44

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.98  E-value=3.2e-08  Score=79.57  Aligned_cols=174  Identities=11%  Similarity=0.029  Sum_probs=112.2

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce-------------eeEEecCceeeEEcCCCcEEEEcCCCCeE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC-------------VFLAFTWPRGIAVGPDNSIVVADSSNHRV  121 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i  121 (319)
                      +..+..+++++...++++++.+ .+.+    |+.+...             ....+..+..|+|  ++++++++ .++.|
T Consensus        37 ~~~~nlLais~~~gll~a~~~~-~l~v----~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~~~l  108 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGS-KAVV----GELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TRNAL  108 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETT-EEEE----EEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ESSEE
T ss_pred             cccccEEEEcCCCCEEEEeCCC-EEEE----EEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cCCcE
Confidence            4578999999999988888876 5666    4432111             2224455889999  77766666 67899


Q ss_pred             EEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        122 QVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       122 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      .+||.. -.......      .+...+.++.+.+. + +++...+|.+.+|++....      ...          ....
T Consensus       109 ~v~dv~sl~~~~~~~------~~~~~v~~i~~~~p-~-~av~~~dG~L~v~dl~~~~------~~~----------~~~~  164 (388)
T 1xip_A          109 YSLDLEELSEFRTVT------SFEKPVFQLKNVNN-T-LVILNSVNDLSALDLRTKS------TKQ----------LAQN  164 (388)
T ss_dssp             EEEESSSTTCEEEEE------ECSSCEEEEEECSS-E-EEEEETTSEEEEEETTTCC------EEE----------EEES
T ss_pred             EEEEchhhhccCccc------eeecceeeEEecCC-C-EEEEECCCCEEEEEccCCc------ccc----------ccCC
Confidence            999942 22221111      11123455554443 3 6666789999999997432      111          1135


Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE---EEEeCCCCCCc---ccccCcceEEEcCCCcEEEE
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV---ITSFGSEGSEE---GQLKFPRGVAVDDQGYISVG  262 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~i~~~~~g~~~v~  262 (319)
                      +.+++|+|+|  ++.+..++.+++|++++..   ...+..+....   ++...+.+|.|.+++.++++
T Consensus       165 Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          165 VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            7899999999  4567778999999987766   44553322111   23456889999999887776

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.95  E-value=1.4e-07  Score=83.55  Aligned_cols=218  Identities=13%  Similarity=0.118  Sum_probs=119.9

Q ss_pred             CCcceEEcCCCcEEEEeCCC-----CeEEEeccccccccceeeEE-ecCc--eeeEEcCCCc-EEEEcCC----------
Q psy13998         57 WPRGIAVGPDNSIVVADSSN-----HRVQVCFPHFDLKTNCVFLA-FTWP--RGIAVGPDNS-IVVADSS----------  117 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~~~~--~~l~~~~~g~-~~~~~~~----------  117 (319)
                      .+.+++|+|||++++....+     ..|++    |++.+++.... ....  .+++|+|| + ++++...          
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v----~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKF----VGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEE----EETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEE----EECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            45678999999976654322     46999    88887665442 2222  57899999 6 4444322          


Q ss_pred             ---CCeEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----CCEEEEEecCCceeeecCceee
Q psy13998        118 ---NHRVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       118 ---~~~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                         ...|++|+.. +.  ....+..    ..+.....++.++|||+.++....     ...|.++|+.+...    +...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~----~~~~  310 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFAT----PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI----GPVT  310 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE----CCCE
T ss_pred             CCCCCEEEEEECCCCchhCEEEecc----CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC----cccE
Confidence               2248888843 22  1222211    111123578899999976554332     35889888764200    1011


Q ss_pred             eecccCCcCCCCCCceeEEEcCCCc-EEEEeC---CCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998        187 KFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDS---NNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQGYIS  260 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~  260 (319)
                      .+..      ........ ++++|. +++...   .++.|++++.++  .....+..     .....+.++.++ ++.++
T Consensus       311 ~l~~------~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-----~~~~~l~~~~~~-~~~lv  377 (741)
T 1yr2_A          311 ALIP------DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-----ESKDNLESVGIA-GNRLF  377 (741)
T ss_dssp             EEEC------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-----CCSSEEEEEEEE-BTEEE
T ss_pred             EecC------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-----CCCCeEEEEEEE-CCEEE
Confidence            1110      11111222 236664 444433   256799999765  23333321     111124566776 55788


Q ss_pred             EEeCCCCEE--EEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        261 VGDSGNNRI--QIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       261 v~~~~~~~i--~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      ++...++..  .+++.+|+..+.+..     .....+.++++++++.
T Consensus       378 ~~~~~dg~~~l~~~~~~g~~~~~l~~-----~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          378 ASYIHDAKSQVLAFDLDGKPAGAVSL-----PGIGSASGLSGRPGDR  419 (741)
T ss_dssp             EEEEETTEEEEEEEETTSCEEEECBC-----SSSCEEEEEECCBTCS
T ss_pred             EEEEECCEEEEEEEeCCCCceeeccC-----CCCeEEEEeecCCCCC
Confidence            887777654  455566776666521     1234567788888876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=7e-07  Score=78.03  Aligned_cols=163  Identities=12%  Similarity=0.132  Sum_probs=93.9

Q ss_pred             ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc------ee----eEEcCCCcEEEEcCC-----CCeEEEE
Q psy13998         60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP------RG----IAVGPDNSIVVADSS-----NHRVQVF  124 (319)
Q Consensus        60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~----l~~~~~g~~~~~~~~-----~~~i~~~  124 (319)
                      ++++. ++++| .++.++.|..    +|..+++....+...      ..    ..+. ++.+|+....     ++.|+.|
T Consensus       123 ~~a~~-~~~v~-v~~~dg~l~a----lD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~  195 (677)
T 1kb0_A          123 GVALW-KGKVY-VGAWDGRLIA----LDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAY  195 (677)
T ss_dssp             CCEEE-TTEEE-EECTTSEEEE----EETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEE
T ss_pred             CceEE-CCEEE-EEcCCCEEEE----EECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEE
Confidence            45553 34444 4567889999    888877766544322      11    1222 4566665432     6899999


Q ss_pred             c-CCCcEEEEecCCCccC--------------------------CCCCCceeEEEeCCCeEEEEeCCCC-----------
Q psy13998        125 Q-SDGTFVGKFGSMGNKA--------------------------GQLEHPHYIAVSNTNRVIVSDSNNH-----------  166 (319)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~g~~~~~~~~~~-----------  166 (319)
                      | .+|+.+..+.......                          +.......+++++++.+++....++           
T Consensus       196 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~  275 (677)
T 1kb0_A          196 DAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPK  275 (677)
T ss_dssp             ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred             ECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCcc
Confidence            9 7899888775432110                          0001113578888665544444432           


Q ss_pred             --------EEEEEecCCceeeecCceeeeecccCCc---CCCCCCceeEEEcCCC---cEEEEeCCCCeEEEEeC-CCCE
Q psy13998        167 --------RVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVSNTN---RVIVSDSNNHRVQIFDV-NGRV  231 (319)
Q Consensus       167 --------~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g---~~~v~~~~~~~i~~~~~-~~~~  231 (319)
                              .|..+|.++      |+.+..+......   ......|..+....+|   ..++....++.++++|. +|+.
T Consensus       276 ~gd~~~~~sv~AlD~~T------G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          276 GGDNLYLASIVALDPDT------GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (677)
T ss_dssp             CCCCTTTTEEEEECTTT------CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCeeeEEEEEEECCC------CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence                    588888773      4555544321110   0112334434443466   67888888999999995 6887


Q ss_pred             EEEe
Q psy13998        232 ITSF  235 (319)
Q Consensus       232 ~~~~  235 (319)
                      +..+
T Consensus       350 l~~~  353 (677)
T 1kb0_A          350 ISAK  353 (677)
T ss_dssp             EEEE
T ss_pred             eccc
Confidence            7655

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.87  E-value=4e-07  Score=80.01  Aligned_cols=219  Identities=14%  Similarity=0.161  Sum_probs=116.8

Q ss_pred             CcCCCCcceEEcCCCcEEEE-----eCCCCeEEEeccccccccceeeE-EecCc--eeeEEcCCCc-EEEEcCC------
Q psy13998         53 GCFTWPRGIAVGPDNSIVVA-----DSSNHRVQVCFPHFDLKTNCVFL-AFTWP--RGIAVGPDNS-IVVADSS------  117 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~g~-~~~~~~~------  117 (319)
                      ++...+.+++++|||++++-     ++....|++    +++.+++... .+...  .+++|+ ||+ ++++...      
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v----~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHL----MDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEE----EETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEE----EECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence            34456778899999996652     222357889    8988776543 33333  578899 886 4444322      


Q ss_pred             ------CCeEEEEcCCC-c--EEEEecCCCccCC-CCCCceeEEEeCCCeEEEE-eC---CCCEEEEEecCCceeeecCc
Q psy13998        118 ------NHRVQVFQSDG-T--FVGKFGSMGNKAG-QLEHPHYIAVSNTNRVIVS-DS---NNHRVQIFDVNGRVFQSDGT  183 (319)
Q Consensus       118 ------~~~i~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~-~~---~~~~i~~~~~~~~~~~~~~~  183 (319)
                            ...|++|+... .  ....+..    .. +.....++.++++|+.++. ..   ..+.++++++++.    .+.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~----~~~  272 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGA----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE----NAP  272 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESC----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST----TCC
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEec----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC----CCc
Confidence                  23588887432 1  1222221    11 1223467889999976543 22   2358999987642    111


Q ss_pred             eeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCC---CCeEEEEeCCCCE---EEEeCCCCCCcccccCcceEEEcCC
Q psy13998        184 FVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSN---NHRVQIFDVNGRV---ITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~---~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                      +. .+.      ......... ++++ +.+++....   ++.|++++.++..   .+.+.      .+.....  .++++
T Consensus       273 ~~-~l~------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~------~~~~~~~--~~s~~  336 (693)
T 3iuj_A          273 LL-TVQ------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI------PERQQVL--TVHSG  336 (693)
T ss_dssp             CE-EEE------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE------CCCSSCE--EEEEE
T ss_pred             eE-EEe------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe------cCCCCEE--EEEEE
Confidence            11 111      011111122 4444 456665543   4689999975422   12331      1111122  67777


Q ss_pred             CcEEEEeC-CCC--EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        257 GYISVGDS-GNN--RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       257 g~~~v~~~-~~~--~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                      ++.++... .++  +|++|+.+|...+.+..     .....+..+.+++++.
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~-----p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEGKRVREVAL-----PGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTSCEEEEECC-----SSSSEEEECCCCTTCS
T ss_pred             CCEEEEEEEECCeeEEEEEECCCCeeEEeec-----CCCceEEeeecCCCCC
Confidence            76544443 333  78999988877666532     1122344555556655

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.87  E-value=3e-06  Score=67.55  Aligned_cols=199  Identities=13%  Similarity=0.166  Sum_probs=125.7

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCC---------------CeEEEeccccccccc--eeeEEec----------CceeeEE
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSN---------------HRVQVCFPHFDLKTN--CVFLAFT----------WPRGIAV  105 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~---------------~~v~~~~~~~~~~~~--~~~~~~~----------~~~~l~~  105 (319)
                      .++..|.++.+++.|++|+.+++.               -+|.+    ||+.++  +.++.+.          ....+++
T Consensus        84 ~~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~----~DL~t~~~~li~~y~~p~~~~~~~S~l~di~V  159 (381)
T 3q6k_A           84 KELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVA----YDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAV  159 (381)
T ss_dssp             CSSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEE----EESSSTTCCEEEEEECCGGGCCCGGGEEEEEE
T ss_pred             cceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEE----EECCCCCceeEEEEECCHHhcccCCccceEEE
Confidence            458899999999999999998651               25677    999998  7776443          2366777


Q ss_pred             c---C-----CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC--------CC----CCCceeEEEeCC----C-eEE
Q psy13998        106 G---P-----DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA--------GQ----LEHPHYIAVSNT----N-RVI  159 (319)
Q Consensus       106 ~---~-----~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~--------~~----~~~~~~l~~~~~----g-~~~  159 (319)
                      +   +     ++-.|+++.....|.++| .+++..+.....-...        +.    ...+.+|+++|+    + .+|
T Consensus       160 D~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LY  239 (381)
T 3q6k_A          160 DVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAY  239 (381)
T ss_dssp             EESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEE
T ss_pred             ecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEE
Confidence            7   2     235899999899999999 4554443331100000        00    136678888885    3 567


Q ss_pred             EEeCCCCEEEEEecCCceeeec--CceeeeecccCCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCC-CE----
Q psy13998        160 VSDSNNHRVQIFDVNGRVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNG-RV----  231 (319)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~-~~----  231 (319)
                      +.......++....+  .+...  ...+..++..    +......+++++ .+|.+|++....+.|..|++++ ..    
T Consensus       240 f~plss~~ly~V~T~--~L~~~~~~~~v~~~G~k----g~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n  313 (381)
T 3q6k_A          240 YLAGSAIKVYSVNTK--ELKQKGGKLNPELLGNR----GKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKN  313 (381)
T ss_dssp             EEESSCSEEEEEEHH--HHSSTTCCCCCEEEEEC----CTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGG
T ss_pred             EEECCCCcEEEEEHH--HhhCcchhhceEEeeec----CCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCc
Confidence            766665566554321  11000  0111111111    111223457786 7899999999999999999876 21    


Q ss_pred             EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                      ...+..    ...+.+|.++.++++|.+|+....
T Consensus       314 ~~~l~~----d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          314 TDVVYT----SSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             EEEEEE----CTTCCSEEEEEECTTSCEEEEECS
T ss_pred             eEEEEE----CCCccccCeEEECCCCeEEEEECc
Confidence            222211    236778999999999999998754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.85  E-value=9.2e-08  Score=76.95  Aligned_cols=173  Identities=12%  Similarity=0.044  Sum_probs=110.2

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCC-Cc-----------EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSD-GT-----------FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH  166 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~  166 (319)
                      ..+.+++++...++++++.+ .+++|+.+ ..           .....       .... +..++|  ++++++++ .++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-------~lp~-V~~l~f--d~~~L~v~-~~~  106 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-------EIPD-VIFVCF--HGDQVLVS-TRN  106 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-------ECTT-EEEEEE--ETTEEEEE-ESS
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-------eCCC-eeEEEE--CCCEEEEE-cCC
Confidence            56889999998888887766 56668621 11           10111       1113 789999  67776666 778


Q ss_pred             EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccc
Q psy13998        167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQL  245 (319)
Q Consensus       167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~  245 (319)
                      .|.+||.....   .+.....+         ......+...+. + +++...+|.|++|+.. +... ..         .
T Consensus       107 ~l~v~dv~sl~---~~~~~~~~---------~~~v~~i~~~~p-~-~av~~~dG~L~v~dl~~~~~~-~~---------~  162 (388)
T 1xip_A          107 ALYSLDLEELS---EFRTVTSF---------EKPVFQLKNVNN-T-LVILNSVNDLSALDLRTKSTK-QL---------A  162 (388)
T ss_dssp             EEEEEESSSTT---CEEEEEEC---------SSCEEEEEECSS-E-EEEEETTSEEEEEETTTCCEE-EE---------E
T ss_pred             cEEEEEchhhh---ccCcccee---------ecceeeEEecCC-C-EEEEECCCCEEEEEccCCccc-cc---------c
Confidence            99999987532   11111111         112334444432 2 5556778999999975 4433 22         2


Q ss_pred             cCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce---EEeecccCCC---CCCCCCcceEEEccCCcEEEE
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF---LRAFGCWGSG---DGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~---~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~v~  309 (319)
                      ..+.+++|+|+|  ++.+..++.+++|++++..   .+.+..+...   .++...+.+|.|.+++.++++
T Consensus       163 ~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          163 QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            368899999999  5667788999999987766   4455322111   124567999999999886665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.83  E-value=5e-06  Score=72.85  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=49.4

Q ss_pred             CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998        220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      +.|+.||+ +|+.+.++..      +.. ..+-.+...+.+++.++.++.|+.|| .+|+.+..+...     ......-
T Consensus       455 g~l~A~D~~tG~~~W~~~~------~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~-----~~~~~~p  522 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPY------VTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA-----SGVMAAP  522 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEE------SSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-----SCCCSCC
T ss_pred             eeEEEEECCCCCeEeEccC------CCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC-----CCcccCc
Confidence            67999996 5777666521      111 12223444556667778999999999 679999877432     1112233


Q ss_pred             EEEccCCcEEEE
Q psy13998        298 VAVMSNGNILVC  309 (319)
Q Consensus       298 l~~~~~g~~~v~  309 (319)
                      +.+..+|+.|++
T Consensus       523 ~ty~~~G~qyv~  534 (689)
T 1yiq_A          523 VTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEETTEEEEE
T ss_pred             eEEEECCEEEEE
Confidence            677789986655

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=4e-06  Score=73.28  Aligned_cols=190  Identities=11%  Similarity=0.123  Sum_probs=108.1

Q ss_pred             eeEEcCCCcEEEEcCCCC-------------------eEEEEc-CCCcEEEEecCCCccC---CCCCCceeEEEeCCC--
Q psy13998        102 GIAVGPDNSIVVADSSNH-------------------RVQVFQ-SDGTFVGKFGSMGNKA---GQLEHPHYIAVSNTN--  156 (319)
Q Consensus       102 ~l~~~~~g~~~~~~~~~~-------------------~i~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~g--  156 (319)
                      .+++++++.+++.+..++                   .|..+| .+|+.+..+.......   .....|.-+....+|  
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~  326 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP  326 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence            467888776555444442                   599999 6789888775432100   011233333333467  


Q ss_pred             -eEEEEeCCCCEEEEEecCCceeeecCceeeeecccC-----------C----------------cCCC--CCCceeEEE
Q psy13998        157 -RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-----------N----------------KAGQ--LEHPHYIAV  206 (319)
Q Consensus       157 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~----------------~~~~--~~~~~~~~~  206 (319)
                       .+++....++.++++|..+.      +++.......           .                .+..  ...-.++++
T Consensus       327 ~~~l~~~~~~G~l~~lD~~tG------~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~  400 (677)
T 1kb0_A          327 RKVILHAPKNGFFFVLDRTNG------KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF  400 (677)
T ss_dssp             EEEEEECCTTSEEEEEETTTC------CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred             eeEEEEECCCCEEEEEECCCC------CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence             67888888999999998642      3322221000           0                0000  001135789


Q ss_pred             cCCCcEEEEeCC-------------------------------------------CCeEEEEeC-CCCEEEEeCCCCCCc
Q psy13998        207 SNTNRVIVSDSN-------------------------------------------NHRVQIFDV-NGRVITSFGSEGSEE  242 (319)
Q Consensus       207 ~~~g~~~v~~~~-------------------------------------------~~~i~~~~~-~~~~~~~~~~~~~~~  242 (319)
                      +|++.++++...                                           .+.|..||. +|+.+.++...    
T Consensus       401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----  476 (677)
T 1kb0_A          401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----  476 (677)
T ss_dssp             ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----
T ss_pred             cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----
Confidence            987655444211                                           267999996 57776665211    


Q ss_pred             ccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998        243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~  309 (319)
                         ..+.+..+..++.+++.++.++.+++|| .+|+.+..+...     ......-+.+..+|+.|++
T Consensus       477 ---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~-----~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          477 ---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG-----TGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             ---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-----SCCCSCCEEEEETTEEEEE
T ss_pred             ---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC-----CCcccCCEEEEeCCEEEEE
Confidence               1123334445555556668899999999 579998887432     1112234566788885554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.81  E-value=2.8e-07  Score=81.69  Aligned_cols=232  Identities=15%  Similarity=0.154  Sum_probs=125.7

Q ss_pred             cccccCCCccchhcccccee-----eeecccCCCCCcC-----CC--CcceEEcCCCcEEEEeCCCC-------------
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQ-----FKIGSRGSEPGCF-----TW--PRGIAVGPDNSIVVADSSNH-------------   77 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~-----~~--~~~v~~~~~g~~~~~~~~~~-------------   77 (319)
                      .+..+.|||++++++.....     ..+..++...+..     ..  ..+++|+|| +.++..+.+.             
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            56778899999987755432     3454444444432     22  268899999 7554443322             


Q ss_pred             -eEEEeccccccccce----eeEEec----CceeeEEcCCCcEEEEcCC-----CCeEEEEcCCCc--E-EEEecCCCcc
Q psy13998         78 -RVQVCFPHFDLKTNC----VFLAFT----WPRGIAVGPDNSIVVADSS-----NHRVQVFQSDGT--F-VGKFGSMGNK  140 (319)
Q Consensus        78 -~v~~~~~~~~~~~~~----~~~~~~----~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~~~--~-~~~~~~~~~~  140 (319)
                       .|++    |++.+..    .+....    ...++.++|+|+.++....     ...|+++|.++.  . ...+..    
T Consensus       243 ~~v~~----~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~----  314 (741)
T 1yr2_A          243 QTVWL----HRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP----  314 (741)
T ss_dssp             CEEEE----EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC----
T ss_pred             CEEEE----EECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC----
Confidence             4778    7765443    222211    2467899999975444332     358999994332  2 233321    


Q ss_pred             CCCCCCceeEEEeCCC-eEEEEeC---CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998        141 AGQLEHPHYIAVSNTN-RVIVSDS---NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  216 (319)
Q Consensus       141 ~~~~~~~~~l~~~~~g-~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  216 (319)
                        +....... +.++| .+++...   .+..|.++++++..    +.....+      ........+++++ ++.++++.
T Consensus       315 --~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~------~~~~~~l~~~~~~-~~~lv~~~  380 (741)
T 1yr2_A          315 --DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVV------PESKDNLESVGIA-GNRLFASY  380 (741)
T ss_dssp             --SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS----CEEEEEE------CCCSSEEEEEEEE-BTEEEEEE
T ss_pred             --CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc----cccEEEe------cCCCCeEEEEEEE-CCEEEEEE
Confidence              11122333 23655 4444433   24679999887420    0111111      1111224456666 56777776


Q ss_pred             CCCCe--EEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC---CCCEEEEEcCCCceEEee
Q psy13998        217 SNNHR--VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS---GNNRIQIFTPDGQFLRAF  282 (319)
Q Consensus       217 ~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~---~~~~i~~~~~~g~~~~~~  282 (319)
                      ..++.  |++++.++.....+...     ....+.++.+++++. ++++.+   ..++|+.||..+.....+
T Consensus       381 ~~dg~~~l~~~~~~g~~~~~l~~~-----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          381 IHDAKSQVLAFDLDGKPAGAVSLP-----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             EETTEEEEEEEETTSCEEEECBCS-----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             EECCEEEEEEEeCCCCceeeccCC-----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence            66654  55666677766655211     123456778888875 444332   347899999654334443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.81  E-value=3.9e-06  Score=73.49  Aligned_cols=162  Identities=15%  Similarity=0.217  Sum_probs=89.3

Q ss_pred             eEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc------eeeEEcC---CCcEEEEcC-----CCCeEEEEc-
Q psy13998         61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP------RGIAVGP---DNSIVVADS-----SNHRVQVFQ-  125 (319)
Q Consensus        61 v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~g~~~~~~~-----~~~~i~~~~-  125 (319)
                      +++. ++++ +.++.++.|..    +|..+++........      ..+...|   ++.+|+...     .++.|+.|| 
T Consensus       117 ~~~~-~g~v-~v~~~dg~l~A----lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~  190 (689)
T 1yiq_A          117 VAVW-KGKV-YVGVLDGRLEA----IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDA  190 (689)
T ss_dssp             CEEE-TTEE-EEECTTSEEEE----EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred             cEEE-CCEE-EEEccCCEEEE----EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEEC
Confidence            4443 4444 44567899999    888877765543321      1111122   566666543     267999999 


Q ss_pred             CCCcEEEEecCC-CccC------------------------CCCCCceeEEEeCCCeEEEEeCCCC--------------
Q psy13998        126 SDGTFVGKFGSM-GNKA------------------------GQLEHPHYIAVSNTNRVIVSDSNNH--------------  166 (319)
Q Consensus       126 ~~~~~~~~~~~~-~~~~------------------------~~~~~~~~l~~~~~g~~~~~~~~~~--------------  166 (319)
                      .+|+.+..+... +...                        +.-.....+++++++.+++.+..++              
T Consensus       191 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd  270 (689)
T 1yiq_A          191 ETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGD  270 (689)
T ss_dssp             TTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSC
T ss_pred             CCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence            789988877531 1100                        0001113578888665555555554              


Q ss_pred             -----EEEEEecCCceeeecCceeeeecccCCcCCC--C-CCceeEEEcCCCc---EEEEeCCCCeEEEEeC-CCCEEEE
Q psy13998        167 -----RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ--L-EHPHYIAVSNTNR---VIVSDSNNHRVQIFDV-NGRVITS  234 (319)
Q Consensus       167 -----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~---~~v~~~~~~~i~~~~~-~~~~~~~  234 (319)
                           .|..+|.++      |+.+..+.........  . ..+....+..+|+   .++....++.++++|. +|+.+..
T Consensus       271 ~~y~~~v~AlD~~T------G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          271 NLFLSSIVAVNADT------GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             CTTTTEEEEEETTT------CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             ceeeeeEEEEEccC------CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence                 488888873      4555544321110000  1 1111112222454   6777888999999995 6777643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.75  E-value=2.9e-06  Score=66.49  Aligned_cols=186  Identities=14%  Similarity=0.366  Sum_probs=112.5

Q ss_pred             CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC----C----eEEEEeCC--CCEEEEEecCCce
Q psy13998        108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT----N----RVIVSDSN--NHRVQIFDVNGRV  177 (319)
Q Consensus       108 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----g----~~~~~~~~--~~~i~~~~~~~~~  177 (319)
                      ...++++....+.+.+||.+|+.+..+..        ..++.+.+-++    |    ..++++..  +++|.+|+++.. 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-  109 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-  109 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC--------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC--------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-
Confidence            34566666667789999999999988731        34566665552    2    24667777  799999966421 


Q ss_pred             eeecCceeeeecccC-CcCCCCCCceeEEE--cCC-Cc-EEEEeCCCCeEEEEeC----CC----CEEEEeCCCCCCccc
Q psy13998        178 FQSDGTFVGKFGSMG-NKAGQLEHPHYIAV--SNT-NR-VIVSDSNNHRVQIFDV----NG----RVITSFGSEGSEEGQ  244 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~-g~-~~v~~~~~~~i~~~~~----~~----~~~~~~~~~~~~~~~  244 (319)
                         . ..+....... ........|.++++  ++. +. +.++...++.+..|..    +|    +.++++..       
T Consensus       110 ---~-~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-------  178 (355)
T 3amr_A          110 ---N-GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-------  178 (355)
T ss_dssp             ---T-CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-------
T ss_pred             ---C-CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-------
Confidence               0 1122221100 00122367889998  764 54 3455566789888774    22    34555532       


Q ss_pred             ccCcceEEEcCC-CcEEEEeCCCCEEEEEcC--C----CceEEeecccCCCCCCC-CCcceEEEc--cCCc--EEEEeCC
Q psy13998        245 LKFPRGVAVDDQ-GYISVGDSGNNRIQIFTP--D----GQFLRAFGCWGSGDGEF-KGLEGVAVM--SNGN--ILVCDRE  312 (319)
Q Consensus       245 ~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~--~----g~~~~~~~~~~~~~~~~-~~~~~l~~~--~~g~--~~v~~~~  312 (319)
                      ...+.++++++. |.+|++.-. ..|..|+.  +    ++.+..+.     .+++ ..+.+|++.  ++|+  +++++-.
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~-----~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRAD-----GRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBS-----SSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             CCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEec-----CCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            135788999976 677777665 55999983  3    33444432     1223 368999984  4444  6777767


Q ss_pred             CCeEEeC
Q psy13998        313 NHRIQVF  319 (319)
Q Consensus       313 ~~~i~v~  319 (319)
                      +++..+|
T Consensus       253 ~~s~~Vy  259 (355)
T 3amr_A          253 NSSYAIY  259 (355)
T ss_dssp             GTEEEEE
T ss_pred             CCEEEEE
Confidence            7776664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.73  E-value=3.4e-05  Score=67.38  Aligned_cols=111  Identities=15%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             CcceEEcC-CCcEEEEeCCCC-----------eEEEeccccccccceeeE--Eec-----CceeeEEcCCCcEEEEcCC-
Q psy13998         58 PRGIAVGP-DNSIVVADSSNH-----------RVQVCFPHFDLKTNCVFL--AFT-----WPRGIAVGPDNSIVVADSS-  117 (319)
Q Consensus        58 ~~~v~~~~-~g~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~--~~~-----~~~~l~~~~~g~~~~~~~~-  117 (319)
                      +.+.++.+ +|++|+.++.+.           .+.+    ||..++....  .+.     ...++++..++++|+.++. 
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~----yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~  263 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS----WDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND  263 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEE----ECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEE----EeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence            45677777 899988875322           5777    7766544221  221     1234677788999999874 


Q ss_pred             CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CC-----CEEEEEecCCc
Q psy13998        118 NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN-----HRVQIFDVNGR  176 (319)
Q Consensus       118 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~-----~~i~~~~~~~~  176 (319)
                      ...+.+||+....-......   . ....-.++++.++|++|+.++ .+     ..+.+||+...
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~---~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDM---Q-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCC---S-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             CCceEEecCcCCceeECCCC---C-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            45799999544333332211   1 111224566667899999987 33     56889998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.71  E-value=8.3e-09  Score=83.46  Aligned_cols=182  Identities=8%  Similarity=0.064  Sum_probs=89.8

Q ss_pred             CcEEEEeCCCCeEEEeccccccccceeeEEec--CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCC
Q psy13998         67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ  143 (319)
Q Consensus        67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~  143 (319)
                      +..+++++.++.|+.    ||..+++....+.  .+.+..+..++.++++++.++.|+.|| .+|+.+..+....... .
T Consensus         9 ~~~v~~gs~dg~v~a----~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-~   83 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHA----VSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-V   83 (369)
T ss_dssp             TTEEEEEETTSEEEE----EETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH-H
T ss_pred             CCEEEEEcCCCEEEE----EECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc-c
Confidence            455556677899999    8887776655443  233333445677888888899999999 4777665553210000 0


Q ss_pred             CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEE
Q psy13998        144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  223 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~  223 (319)
                      ...|   ++..++. +++++.++.++.||..+      |+.+..+....          ....+|++..++++..++.|+
T Consensus        84 ~~sp---~~~~~~~-v~~g~~dg~v~a~D~~t------G~~~w~~~~~~----------~~~~~p~~~~v~~~~~dg~v~  143 (369)
T 2hz6_A           84 QASP---CRSSDGI-LYMGKKQDIWYVIDLLT------GEKQQTLSSAF----------ADSLSPSTSLLYLGRTEYTIT  143 (369)
T ss_dssp             TTCS---CC------CCCCEEEEEEEEECCC--------------------------------------EEEEEEEEEEE
T ss_pred             ccCc---eEecCCE-EEEEeCCCEEEEEECCC------CcEEEEecCCC----------cccccccCCEEEEEecCCEEE
Confidence            0111   1112333 44455678899998873      34433332110          122344555566666678999


Q ss_pred             EEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC----CcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998        224 IFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ----GYISVGDSGNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       224 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----g~~~v~~~~~~~i~~~~~-~g~~~~~~  282 (319)
                      .||. +|+.+..+...     .   ....+++.+    +.+|+ ++.++.|+.||. +|+.+...
T Consensus       144 a~d~~tG~~~W~~~~~-----~---~~~~~~~~~~~~~~~v~~-~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          144 MYDTKTRELRWNATYF-----D---YAASLPEDDVDYKMSHFV-SNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             CCCSSSSSCCCEEEEE-----E---ECCBCCCCCTTCCCCEEE-EETSCEEEEECTTTCCEEEEE
T ss_pred             EEECCCCCEEEeEecc-----c---ccCccccCCccccceEEE-ECCCCEEEEEECCCCcEEEEe
Confidence            9995 66655443110     0   112233332    45665 456799999995 78887765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.70  E-value=2e-05  Score=70.14  Aligned_cols=235  Identities=12%  Similarity=0.092  Sum_probs=133.5

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeEE-----------ecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFLA-----------FTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~-----------~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      .+.++..+.+|++|+... +| +..    ++..+.  .....           ...+.++..+++|++|++.  ++.+.+
T Consensus       325 ~v~~i~~D~~g~lWiGt~-~G-l~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~GL~~  396 (758)
T 3ott_A          325 QFYSLFRDSKGFYWFGGA-NG-LIR----FTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DGSINR  396 (758)
T ss_dssp             BEEEEEECTTCCEEEEET-TE-EEE----ESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             eEEEEEEcCCCCEEEeeC-Cc-cee----ecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CCcHhh
Confidence            467888899999999863 44 555    443321  11111           1235778888889999976  357999


Q ss_pred             EcCCCcEEEEecCCCc-cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCcee--eeecccCCcCCCCCC
Q psy13998        124 FQSDGTFVGKFGSMGN-KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV--GKFGSMGNKAGQLEH  200 (319)
Q Consensus       124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  200 (319)
                      |++.......+..... .......+.++..+++|++|+... .+.+.+++...........+.  ..+.....  -....
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~  473 (758)
T 3ott_A          397 YDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTC-LGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG--LSGMF  473 (758)
T ss_dssp             EETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEES-SSCEEEEEHHHHHHCCSSEEECSEEECGGGT--CSCSC
T ss_pred             cCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEEC-CCceEEEccccccccCCcceecccccccccc--cccce
Confidence            9965544444321110 001224567888888999998654 345777775421000001111  11111000  01124


Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEE
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR  280 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~  280 (319)
                      +.++..+++|++|+.++..+.+.++++.......+....  ......+.++..+.+|++|++..  +-|..|++......
T Consensus       474 i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~  549 (758)
T 3ott_A          474 INQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADE--LTGEKSPNYLLCDEDGLLWVGFH--GGVMRINPKDESQQ  549 (758)
T ss_dssp             EEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTT--SCGGGCEEEEEECTTSCEEEEET--TEEEEECC--CCCC
T ss_pred             eeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCC--cCCCcccceEEECCCCCEEEEec--CceEEEecCCCceE
Confidence            677888999999984333456899998766555552211  11124567889999999999874  46999997554433


Q ss_pred             eecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      .+...   .-....+.++..+ +|+++++.
T Consensus       550 ~~~~~---gl~~~~i~~i~~~-~g~lWi~t  575 (758)
T 3ott_A          550 SISFG---SFSNNEILSMTCV-KNSIWVST  575 (758)
T ss_dssp             BCCCC---C---CCEEEEEEE-TTEEEEEE
T ss_pred             Eeccc---CCCccceEEEEEC-CCCEEEEC
Confidence            33110   0112346677664 77888776

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.67  E-value=4.4e-05  Score=63.18  Aligned_cols=243  Identities=14%  Similarity=0.089  Sum_probs=125.0

Q ss_pred             cCCCCcceEEcCCCc--EEEEeCCCCeEEEeccccccccc---eeeEE-------------ecCceeeEEcCC----CcE
Q psy13998         54 CFTWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFDLKTN---CVFLA-------------FTWPRGIAVGPD----NSI  111 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-------------~~~~~~l~~~~~----g~~  111 (319)
                      .+..|++|++.|+|.  +||+.. .+.|++    ++....   ..+..             ...+.+|+++|+    +.+
T Consensus        12 gL~~P~~~a~~pdG~~rl~V~er-~G~i~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~l   86 (463)
T 2wg3_C           12 GLRQPVGALHSGDGSQRLFILEK-EGYVKI----LTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKL   86 (463)
T ss_dssp             EESSEEEEECCSSSSCCEEEEET-TTEEEE----ECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEE
T ss_pred             CCCCceEEEECCCCCeEEEEEeC-CceEEE----EeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEE
Confidence            378999999999985  888875 689999    543211   11111             124678999996    677


Q ss_pred             EEEcCC--C----------CeEEEEcCC----C-------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---
Q psy13998        112 VVADSS--N----------HRVQVFQSD----G-------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---  165 (319)
Q Consensus       112 ~~~~~~--~----------~~i~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---  165 (319)
                      |++-+.  +          .+|..|..+    .       +.+..+..    ....+....|+|.|||.+|++.+..   
T Consensus        87 Yv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~~H~g~~l~fgpDG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           87 YVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHRKHLGGQLLFGPDGFLYIILGDGMIT  162 (463)
T ss_dssp             EEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSSSSCEEEEEECTTSCEEEEECCTTCC
T ss_pred             EEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCCcccCCcEeECCCCcEEEEeCCCCCC
Confidence            776432  1          256666522    1       12222211    1223456789999999999986532   


Q ss_pred             --------------CEEEEEecCCce-----eeecC-ceeeeeccc-CCcCCCCCCceeEEEcCC-----Cc--EEEEeC
Q psy13998        166 --------------HRVQIFDVNGRV-----FQSDG-TFVGKFGSM-GNKAGQLEHPHYIAVSNT-----NR--VIVSDS  217 (319)
Q Consensus       166 --------------~~i~~~~~~~~~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----g~--~~v~~~  217 (319)
                                    ++|..++.++..     ..+.+ .+....... ..-..-+..|.+++|++.     |+  ++.++.
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence                          456667766520     00000 000000000 000122457899999986     44  444543


Q ss_pred             -CC----CeEEEEeCCC-----CEEEEeCCCCCCcccccCcceEEEcC-------CCcEEEEeCCCCEEEEEcCCCc--e
Q psy13998        218 -NN----HRVQIFDVNG-----RVITSFGSEGSEEGQLKFPRGVAVDD-------QGYISVGDSGNNRIQIFTPDGQ--F  278 (319)
Q Consensus       218 -~~----~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~-------~g~~~v~~~~~~~i~~~~~~g~--~  278 (319)
                       ..    ..|......+     ..+..+.     ......|.++.|-.       .|.+|++... ++|..+..+..  .
T Consensus       243 ~G~~~~~~ei~~i~~G~~yG~~~P~~~~~-----~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~  316 (463)
T 2wg3_C          243 NGKNRSSARILQIIKGKDYESEPSLLEFK-----PFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQ  316 (463)
T ss_dssp             ------CEEEEEEC----CCSCCCCEECC-----C----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----C
T ss_pred             CCCCCCCCeEeeeccCCCCCCCCCeEEee-----CCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCce
Confidence             11    1222221110     1111211     00013567777743       2457777765 67777763321  1


Q ss_pred             --EEee--cccC-CCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        279 --LRAF--GCWG-SGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       279 --~~~~--~~~~-~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                        ...+  +... ........|.+++++|||.+|+++.
T Consensus       317 ~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          317 WQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             CEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred             eeEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence              1111  1000 0012235789999999999999885

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.62  E-value=5.1e-06  Score=73.09  Aligned_cols=226  Identities=16%  Similarity=0.138  Sum_probs=120.2

Q ss_pred             cccccCCCccchhcc-----ccceeeeecccCCCCCc-----CCC--CcceEEcCCCcEEEEeCCC-------------C
Q psy13998         23 GIGQVGTTPRSQYLQ-----KRRLQFKIGSRGSEPGC-----FTW--PRGIAVGPDNSIVVADSSN-------------H   77 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~-----~~~--~~~v~~~~~g~~~~~~~~~-------------~   77 (319)
                      .+..+.+||++++++     .++....+..++...|.     +..  ..+++|+ ||+.++..+.+             .
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~  208 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH  208 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence            466778999999877     34434455555444443     222  3678999 99854444333             3


Q ss_pred             eEEEeccccccccce----eeEEecC-----ceeeEEcCCCcEE-EEcC---CCCeEEEEcCCCc--EEEEecCCCccCC
Q psy13998         78 RVQVCFPHFDLKTNC----VFLAFTW-----PRGIAVGPDNSIV-VADS---SNHRVQVFQSDGT--FVGKFGSMGNKAG  142 (319)
Q Consensus        78 ~v~~~~~~~~~~~~~----~~~~~~~-----~~~l~~~~~g~~~-~~~~---~~~~i~~~~~~~~--~~~~~~~~~~~~~  142 (319)
                      .|++    |++.+..    .+.+...     ..++.++|+|+.+ ++..   ....|++++.++.  ....+..      
T Consensus       209 ~v~~----~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~------  278 (693)
T 3iuj_A          209 KVYF----HRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG------  278 (693)
T ss_dssp             EEEE----EETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC------
T ss_pred             EEEE----EECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC------
Confidence            4888    7665433    2222222     3578899999854 3322   2358999984322  2223321      


Q ss_pred             CCCCceeEEEeC-CCeEEEEeCC---CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE-EeC
Q psy13998        143 QLEHPHYIAVSN-TNRVIVSDSN---NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDS  217 (319)
Q Consensus       143 ~~~~~~~l~~~~-~g~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~~  217 (319)
                      +....... +++ .+.+|+....   ...|..+++++....   .. ..+.     . +.....  .++++++.++ +..
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---~~-~~l~-----~-~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---HW-RDLI-----P-ERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GC-EEEE-----C-CCSSCE--EEEEETTEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cc-EEEe-----c-CCCCEE--EEEEECCEEEEEEE
Confidence            11122222 444 4566666543   368888888752100   00 1110     1 111112  6666665444 433


Q ss_pred             CCC--eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC---CCCEEEEEcCCCc
Q psy13998        218 NNH--RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS---GNNRIQIFTPDGQ  277 (319)
Q Consensus       218 ~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~---~~~~i~~~~~~g~  277 (319)
                      .++  .|++|+.++.....+....     ......+.+++++. ++++.+   .-..|+.||..+.
T Consensus       346 ~~g~~~l~~~d~~g~~~~~l~~p~-----~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          346 VDATARVEQFDYEGKRVREVALPG-----LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             ETTEEEEEEECTTSCEEEEECCSS-----SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             ECCeeEEEEEECCCCeeEEeecCC-----CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            333  7899998887766653211     11233455566764 444433   2378999996443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.61  E-value=0.00015  Score=62.15  Aligned_cols=79  Identities=14%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEE-EcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCc
Q psy13998        219 NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVA-VDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGL  295 (319)
Q Consensus       219 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~  295 (319)
                      .+.|+.+|. +|+.+.++....       .+.+.. ...++.+|+ ++.++.|+.+| .+|+.+..+....   ..  ..
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~-------~~~~~~~~t~gg~v~~-g~~dg~l~a~D~~tG~~lw~~~~~~---~~--~~  509 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKF-------AAWGGTLYTKGGLVWY-ATLDGYLKALDNKDGKELWNFKMPS---GG--IG  509 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-------CCCSBCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSS---CC--CS
T ss_pred             CCeEEEEECCCCCEEEEecCCC-------CccceeEEECCCEEEE-EcCCCeEEEEECCCCCEEEEEeCCC---Cc--Ee
Confidence            478999995 677776652111       112222 223445555 67899999999 6899988774321   11  12


Q ss_pred             ceEEEccCCcEEEEe
Q psy13998        296 EGVAVMSNGNILVCD  310 (319)
Q Consensus       296 ~~l~~~~~g~~~v~~  310 (319)
                      ..+.+..+|++|++.
T Consensus       510 ~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          510 SPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CCEEEEETTEEEEEE
T ss_pred             eeEEEEECCEEEEEE
Confidence            224455788866654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.59  E-value=0.00027  Score=62.94  Aligned_cols=237  Identities=8%  Similarity=0.018  Sum_probs=133.2

Q ss_pred             CcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE--E--ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEE
Q psy13998         58 PRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--A--FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVG  132 (319)
Q Consensus        58 ~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~--~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~  132 (319)
                      +.++..++++. +|+.. . +-+..    ++..+.....  .  -..+.++..+++|.+|++..  +.+.+++.......
T Consensus       193 i~~i~~d~~~~~lWigt-~-~Gl~~----~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl~~~~~~~~~~~  264 (758)
T 3ott_A          193 VNSLLEDTTRQCVWIGT-E-GYLFQ----YFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD--NGLYVYHNDTTPLQ  264 (758)
T ss_dssp             EEEEEEETTTTEEEEEE-E-EEEEE----EETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET--TEEEEECCTTSCCE
T ss_pred             eEEEEEECCCCEEEEEE-C-CCCeE----EcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC--CceeEEecCCCcEE
Confidence            56777777665 67754 2 45777    6665433211  1  12467788888999999863  46889996544333


Q ss_pred             EecCCCc--cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        133 KFGSMGN--KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       133 ~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      .+.....  .......+.++..+.+|.+|+... .| +.++..... +    +.........  ......+.++..+.+|
T Consensus       265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~-~G-l~~~~~~~~-~----~~~~~~~~~~--~~~~~~v~~i~~D~~g  335 (758)
T 3ott_A          265 HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD-YG-ISLSRYNSA-L----QFIPISQITG--TGDGNQFYSLFRDSKG  335 (758)
T ss_dssp             EECCCTTCTTSCSCSCEEEEEECTTCCEEEEES-SS-EEEECCCC--C----EEEEHHHHSC--SCCCCBEEEEEECTTC
T ss_pred             EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC-Cc-ccccccCCc-e----eEEecccCCC--CCCCceEEEEEEcCCC
Confidence            3322111  011224578888899999999764 35 444432210 0    1110000000  0112346778888999


Q ss_pred             cEEEEeCCCCeEEEEeCCC-C--EEEEeCCCC-CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccC
Q psy13998        211 RVIVSDSNNHRVQIFDVNG-R--VITSFGSEG-SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG  286 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~  286 (319)
                      .+|+... + -+..++... .  ....+.... ...-....+.++..+++|++|++.  ++-|..|++.......+....
T Consensus       336 ~lWiGt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~~~~~~~~~~  411 (758)
T 3ott_A          336 FYWFGGA-N-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DGSINRYDYATRQFIHYNIVD  411 (758)
T ss_dssp             CEEEEET-T-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEEEEEEEC
T ss_pred             CEEEeeC-C-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CCcHhhcCcCCCcEEEeecCC
Confidence            9999863 3 577887542 1  122221110 001112346788889999999987  357999997655444432111


Q ss_pred             C-CCCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998        287 S-GDGEFKGLEGVAVMSNGNILVCDRENHR  315 (319)
Q Consensus       287 ~-~~~~~~~~~~l~~~~~g~~~v~~~~~~~  315 (319)
                      . .......+.++..+++|+++++....|.
T Consensus       412 ~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl  441 (758)
T 3ott_A          412 NTGTYNTNWTYYIFEDTAGQLWISTCLGGI  441 (758)
T ss_dssp             CC--CBSSSEEEEEECTTSEEEEEESSSCE
T ss_pred             CcCCCCCceEEEEEEcCCCCEEEEECCCce
Confidence            0 0112345788888999999987755443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.59  E-value=0.00019  Score=61.51  Aligned_cols=163  Identities=15%  Similarity=0.156  Sum_probs=89.5

Q ss_pred             eEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCce-----eeEEcC---CCcEEEEcCC-----CCeEEEEc-C
Q psy13998         61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPR-----GIAVGP---DNSIVVADSS-----NHRVQVFQ-S  126 (319)
Q Consensus        61 v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~---~g~~~~~~~~-----~~~i~~~~-~  126 (319)
                      +++. ++++|+ ++.++.+..    +|..+++.........     .+...|   ++.+|+....     ++.|+.+| .
T Consensus       111 ~~~~-~~~v~v-~~~dg~l~a----lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~  184 (571)
T 2ad6_A          111 LAYG-AGQIVK-KQANGHLLA----LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK  184 (571)
T ss_dssp             CEEE-TTEEEE-ECTTSEEEE----EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETT
T ss_pred             cEEE-CCEEEE-EeCCCEEEE----EECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECC
Confidence            4553 445554 456788999    8887776655332111     111111   5667766543     68999999 6


Q ss_pred             CCcEEEEecCCCccC--------------------------------CCCCCceeEEEeCC-CeEEEEeCC---------
Q psy13998        127 DGTFVGKFGSMGNKA--------------------------------GQLEHPHYIAVSNT-NRVIVSDSN---------  164 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~-g~~~~~~~~---------  164 (319)
                      +|+.+.++.......                                +.-.....++++++ +.+|+....         
T Consensus       185 tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~  264 (571)
T 2ad6_A          185 TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMR  264 (571)
T ss_dssp             TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCcc
Confidence            899888775432110                                00000023677774 566665432         


Q ss_pred             --C----CEEEEEecCCceeeecCceeeeecccCCc---CCCCCCceeEEEcCCC---cEEEEeCCCCeEEEEeC-CCCE
Q psy13998        165 --N----HRVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVSNTN---RVIVSDSNNHRVQIFDV-NGRV  231 (319)
Q Consensus       165 --~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g---~~~v~~~~~~~i~~~~~-~~~~  231 (319)
                        +    +.|..+|.++      |+.+..+......   ......|.-+....+|   ++++....++.++.+|. +|+.
T Consensus       265 ~gd~~y~~~v~Ald~~t------G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  338 (571)
T 2ad6_A          265 PGDNKWTMTIWGRDLDT------GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             CSCCTTTTEEEEEETTT------CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCceeEEEEEEEecCC------CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence              1    3688888863      3555544321100   0011233323333467   35677788899999995 7877


Q ss_pred             EEEe
Q psy13998        232 ITSF  235 (319)
Q Consensus       232 ~~~~  235 (319)
                      +...
T Consensus       339 ~w~~  342 (571)
T 2ad6_A          339 IVAE  342 (571)
T ss_dssp             EEEE
T ss_pred             Eeee
Confidence            7655

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.53  E-value=0.00018  Score=61.79  Aligned_cols=166  Identities=13%  Similarity=0.163  Sum_probs=90.9

Q ss_pred             cceEEcC-CCc---EEEEeCCCCeEEEeccccccccceeeEEecCc--------e-eeEEcCCCcEEEEcC-----CCCe
Q psy13998         59 RGIAVGP-DNS---IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP--------R-GIAVGPDNSIVVADS-----SNHR  120 (319)
Q Consensus        59 ~~v~~~~-~g~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~-~l~~~~~g~~~~~~~-----~~~~  120 (319)
                      .+++++| +++   +++.++.++.+..    +|..+++........        . ...+. ++.+|+...     .++.
T Consensus       109 ~g~av~p~~g~~~~rV~v~t~dg~l~A----lDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~  183 (599)
T 1w6s_A          109 RGLAYWPGDGKTPALILKTQLDGNVAA----LNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGY  183 (599)
T ss_dssp             CCCEEECCCSSSCCEEEEECTTSEEEE----EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCE
T ss_pred             cceEEEecCCcceeEEEEEcCCCEEEE----EECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCe
Confidence            3567743 444   1444566889988    888777665533211        1 11222 466666543     3689


Q ss_pred             EEEEc-CCCcEEEEecCCCccC--------------------------------CCCCCceeEEEeCC-CeEEEEeCC--
Q psy13998        121 VQVFQ-SDGTFVGKFGSMGNKA--------------------------------GQLEHPHYIAVSNT-NRVIVSDSN--  164 (319)
Q Consensus       121 i~~~~-~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~-g~~~~~~~~--  164 (319)
                      |+.+| .+|+.+.++.......                                +.-..-..++++++ +.+|+..+.  
T Consensus       184 v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~  263 (599)
T 1w6s_A          184 LTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPA  263 (599)
T ss_dssp             EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred             EEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCc
Confidence            99999 6899888775432110                                00000124567764 455554332  


Q ss_pred             -------------CCEEEEEecCCceeeecCceeeeecccCCcC---CCCCCceeEEEc-CCC---cEEEEeCCCCeEEE
Q psy13998        165 -------------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA---GQLEHPHYIAVS-NTN---RVIVSDSNNHRVQI  224 (319)
Q Consensus       165 -------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~g---~~~v~~~~~~~i~~  224 (319)
                                   .+.|..+|.++      |+.+..+.......   .....|.-+... .+|   .+++....++.+++
T Consensus       264 p~~~~~r~gd~~y~~sv~Ald~~T------G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~  337 (599)
T 1w6s_A          264 PWNETMRPGDNKWTMTIFGRDADT------GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYT  337 (599)
T ss_dssp             CSCGGGSCSCCTTSSEEEEEETTT------CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEE
T ss_pred             cccCcccCCCccccceEEEEeCCC------CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEE
Confidence                         14788888873      45555443221100   011123222222 466   56777888999999


Q ss_pred             EeC-CCCEEEEe
Q psy13998        225 FDV-NGRVITSF  235 (319)
Q Consensus       225 ~~~-~~~~~~~~  235 (319)
                      +|. +|+.+...
T Consensus       338 lD~~tG~~lw~~  349 (599)
T 1w6s_A          338 LDRTDGALVSAN  349 (599)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEeecc
Confidence            995 77777654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.52  E-value=0.00031  Score=60.32  Aligned_cols=79  Identities=10%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcc
Q psy13998        219 NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLE  296 (319)
Q Consensus       219 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~  296 (319)
                      .+.|+.||+ +|+.+.+....      .....+......|.+| .++.++.++.|| .+|+.+..+....   +...  .
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG~~lW~~~l~~---g~~~--~  519 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER------FAVWGGTMATAGDLVF-YGTLDGYLKARDSDTGDLLWKFKIPS---GAIG--Y  519 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES------SCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCEEEEEECSS---CCCS--C
T ss_pred             cCeEEEEECCCCCEEeEecCC------CCccCcceEecCCEEE-EECCCCeEEEEECCCCCEEEEeeCCC---CcEe--c
Confidence            467888885 67776665211      1111121222334444 477899999999 6899988774321   1112  2


Q ss_pred             eEEEccCCcEEEE
Q psy13998        297 GVAVMSNGNILVC  309 (319)
Q Consensus       297 ~l~~~~~g~~~v~  309 (319)
                      -+.+..+|+.|++
T Consensus       520 P~~y~~~G~qyv~  532 (599)
T 1w6s_A          520 PMTYTHKGTQYVA  532 (599)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             cEEEEeCCEEEEE
Confidence            2556678885544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.52  E-value=6.4e-05  Score=65.70  Aligned_cols=162  Identities=13%  Similarity=0.187  Sum_probs=88.2

Q ss_pred             ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc-----e----eeEEcCCCcEEEEcCC-----CCeEEEEc
Q psy13998         60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP-----R----GIAVGPDNSIVVADSS-----NHRVQVFQ  125 (319)
Q Consensus        60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~----~l~~~~~g~~~~~~~~-----~~~i~~~~  125 (319)
                      ++++. ++++|+ ++.++.|..    +|..+++........     .    ...+. ++.+|+....     ++.|+.+|
T Consensus       112 ~~~~~-~~~v~v-~~~dg~l~a----lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D  184 (668)
T 1kv9_A          112 GVALW-GDKVYV-GTLDGRLIA----LDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYD  184 (668)
T ss_dssp             CCEEE-BTEEEE-ECTTSEEEE----EETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEE
T ss_pred             ceEEE-CCEEEE-EcCCCEEEE----EECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEE
Confidence            34553 445544 567889999    888777665543321     1    11221 4566665432     57899999


Q ss_pred             -CCCcEEEEecCCC-ccCCC------------------------CCCceeEEEeCCCeEEEEeCCCC-------------
Q psy13998        126 -SDGTFVGKFGSMG-NKAGQ------------------------LEHPHYIAVSNTNRVIVSDSNNH-------------  166 (319)
Q Consensus       126 -~~~~~~~~~~~~~-~~~~~------------------------~~~~~~l~~~~~g~~~~~~~~~~-------------  166 (319)
                       .+|+.+..+.... .....                        -.....+++++++.+++.+..++             
T Consensus       185 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~g  264 (668)
T 1kv9_A          185 ADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGG  264 (668)
T ss_dssp             TTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred             CCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence             6899988775421 11100                        01113478888654544444443             


Q ss_pred             ------EEEEEecCCceeeecCceeeeecccCCcCCC--C-CCceeEEEcCCCc---EEEEeCCCCeEEEEeC-CCCEEE
Q psy13998        167 ------RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ--L-EHPHYIAVSNTNR---VIVSDSNNHRVQIFDV-NGRVIT  233 (319)
Q Consensus       167 ------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~---~~v~~~~~~~i~~~~~-~~~~~~  233 (319)
                            .|..+|.++      |+.+..+.........  . ..+....+..+|+   +++....++.++++|. +|+.+.
T Consensus       265 d~l~~~~v~AlD~~t------G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          265 DNLYLSSILAIRPDT------GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             CCTTTTEEEEECTTT------CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CceeeeeEEEEcCCC------CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence                  488888763      4555544321100000  1 1122222223554   5777788999999995 677764


Q ss_pred             E
Q psy13998        234 S  234 (319)
Q Consensus       234 ~  234 (319)
                      .
T Consensus       339 ~  339 (668)
T 1kv9_A          339 A  339 (668)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.48  E-value=0.00032  Score=60.20  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=46.8

Q ss_pred             CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcc
Q psy13998        219 NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLE  296 (319)
Q Consensus       219 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~  296 (319)
                      .+.|+.||+ +|+.+.+....      .....+...... .+++.++.++.++.|| .+|+.+..+....   +.  ...
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~lW~~~~~~---g~--~a~  532 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH------LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQTGS---GI--VSP  532 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES------SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSS---CC--CSC
T ss_pred             cceEEEEECCCCCEEEEecCC------CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEEEEecCCC---Cc--ccC
Confidence            578999995 67777665211      111111122234 4444577899999999 6899998874321   11  122


Q ss_pred             eEEEccCCcEEEE
Q psy13998        297 GVAVMSNGNILVC  309 (319)
Q Consensus       297 ~l~~~~~g~~~v~  309 (319)
                      -+.+..+|+.|++
T Consensus       533 P~~y~~~G~qYv~  545 (582)
T 1flg_A          533 PITWEQDGEQYLG  545 (582)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             ceEEEECCEEEEE
Confidence            3666678986655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.47  E-value=0.00023  Score=55.89  Aligned_cols=198  Identities=13%  Similarity=0.279  Sum_probs=117.3

Q ss_pred             CcEEEEeCCCCeEEEeccccccccceeeEEec--CceeeEEcCC----Cc----EEEEcCC--CCeEEEEc--CCCcEEE
Q psy13998         67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--WPRGIAVGPD----NS----IVVADSS--NHRVQVFQ--SDGTFVG  132 (319)
Q Consensus        67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~----g~----~~~~~~~--~~~i~~~~--~~~~~~~  132 (319)
                      ..++++....+.+.+    |++ +++.+..+.  .++.+.+-++    |+    .+++...  +++|.+|+  +....+.
T Consensus        40 ~s~ii~t~k~~gL~V----ydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           40 NSKLITTNKKSGLVV----YSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GCEEEEEETTTEEEE----EET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             ccEEEEEcCCCCEEE----EcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            345555555678888    888 355555443  4566655542    22    3666666  78999994  4444455


Q ss_pred             EecCCCcc-CCCCCCceeEEE--eC-CCe-EEEEeCCCCEEEEEecCCc-eeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        133 KFGSMGNK-AGQLEHPHYIAV--SN-TNR-VIVSDSNNHRVQIFDVNGR-VFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       133 ~~~~~~~~-~~~~~~~~~l~~--~~-~g~-~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .+.....+ ......|.++++  ++ .++ +.+....++.+..|++... .-...++.++++...       ..+.++++
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-------sq~Egcvv  187 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-------SQTEGMAA  187 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-------SCEEEEEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-------CCcceEEE
Confidence            55321000 122367889998  66 454 3444556688888876210 000123556665432       35788999


Q ss_pred             cCC-CcEEEEeCCCCeEEEEeCC------CCEEEEeCCCCCCcccc-cCcceEEEc--CCC--cEEEEeCCCCEEEEEcC
Q psy13998        207 SNT-NRVIVSDSNNHRVQIFDVN------GRVITSFGSEGSEEGQL-KFPRGVAVD--DQG--YISVGDSGNNRIQIFTP  274 (319)
Q Consensus       207 ~~~-g~~~v~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~i~~~--~~g--~~~v~~~~~~~i~~~~~  274 (319)
                      ++. +.+|+.... ..|+.|+.+      ++.+..+.     .+++ ..+.+|++.  ++|  .+++++-.+++..+|+.
T Consensus       188 Dd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~-----~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          188 DDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRAD-----GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             ETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBS-----SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             cCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEec-----CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            864 677777765 459999943      23443332     1222 257888884  443  57777778899999996


Q ss_pred             C--CceEEee
Q psy13998        275 D--GQFLRAF  282 (319)
Q Consensus       275 ~--g~~~~~~  282 (319)
                      .  .+.+..+
T Consensus       262 ~~~~~~vg~f  271 (355)
T 3amr_A          262 QGKNKYVADF  271 (355)
T ss_dssp             STTCCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            4  4566655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.38  E-value=1.7e-05  Score=57.59  Aligned_cols=150  Identities=9%  Similarity=0.054  Sum_probs=86.1

Q ss_pred             CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEE
Q psy13998        144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  223 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~  223 (319)
                      ......++++|+|.+|+.  .++.++..+........--..-..++..     ....-..+.++++|.+|++  .++.|+
T Consensus        40 w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-----Gw~~F~a~~fD~~G~LYav--~dG~iy  110 (236)
T 1tl2_A           40 WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-----GWNQFQFLFFDPNGYLYAV--SKDKLY  110 (236)
T ss_dssp             CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-----CGGGCSEEEECTTSCEEEE--ETTEEE
T ss_pred             cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-----ccccceEEEECCCCCEEEe--CCCEEE
Confidence            346679999999999998  6677887765321000000001111100     0111356889999999998  469999


Q ss_pred             EEeC--CCCEE-----EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCce------EEeecccCCCC
Q psy13998        224 IFDV--NGRVI-----TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQF------LRAFGCWGSGD  289 (319)
Q Consensus       224 ~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~------~~~~~~~~~~~  289 (319)
                      .+++  ++...     ..++     .........|.++|+|.+|++.  +++++... +.+.-      ...++     .
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg-----~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g-----~  178 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVG-----SGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG-----Q  178 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEE-----CSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE-----S
T ss_pred             EeCCCcCCCCceeccccEec-----cCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec-----c
Confidence            9985  22110     1111     1122345789999999999998  67776655 32210      11111     1


Q ss_pred             CCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        290 GEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       290 ~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      .....-.-+.++++|.+++..  ++.+
T Consensus       179 ~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          179 GGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             SSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCcceEEEEEECCCCcEEEEe--CCeE
Confidence            122233446789999988777  5554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.36  E-value=0.00037  Score=60.97  Aligned_cols=78  Identities=12%  Similarity=0.176  Sum_probs=45.6

Q ss_pred             CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998        220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      +.|+.||+ +|+.+.+...      . ....+..+...|.+++.+..++.|+.|| .+|+.+..+...   .+...  .-
T Consensus       438 g~l~A~D~~tG~~~W~~~~------~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~---~~~~~--~p  505 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPY------P-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ---SGIVA--AP  505 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEE------S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCCCS--CC
T ss_pred             ceEEEEeCCCCcEEEEccC------C-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC---CCccc--Cc
Confidence            77999995 6776665521      1 1122223333455555668899999999 578988877432   11111  22


Q ss_pred             EEEccCCcEEEE
Q psy13998        298 VAVMSNGNILVC  309 (319)
Q Consensus       298 l~~~~~g~~~v~  309 (319)
                      +.+..+|++|++
T Consensus       506 ~~~~~~G~~yva  517 (668)
T 1kv9_A          506 MTFELAGRQYVA  517 (668)
T ss_dssp             EEEEETTEEEEE
T ss_pred             eEEEECCEEEEE
Confidence            444567875544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.35  E-value=8.3e-08  Score=77.60  Aligned_cols=145  Identities=7%  Similarity=0.059  Sum_probs=66.9

Q ss_pred             CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeee
Q psy13998        109 NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK  187 (319)
Q Consensus       109 g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  187 (319)
                      +..+++++.++.|+.|| .+|+.+..+.. +       .+.+..+..++.+|++++.++.++.||..+      |+.+..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t------G~~~w~   74 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKN------NEGLTK   74 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-C-------CSCCCC-----CCEEECTTTCCEEEC-----------CCSEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-C-------CceecceEcCCCEEEEeCCCCEEEEEECCC------Cceeee
Confidence            44555556788999999 78998887743 1       122223345677888888899999999852      232222


Q ss_pred             ecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998        188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~  266 (319)
                      +..... ......|   ++..++. ++++..++.++.||. +|+.+..+....          ...+.|++..+++++.+
T Consensus        75 ~~~~~~-~~~~~sp---~~~~~~~-v~~g~~dg~v~a~D~~tG~~~w~~~~~~----------~~~~~p~~~~v~~~~~d  139 (369)
T 2hz6_A           75 LPFTIP-ELVQASP---CRSSDGI-LYMGKKQDIWYVIDLLTGEKQQTLSSAF----------ADSLSPSTSLLYLGRTE  139 (369)
T ss_dssp             CSCCHH-HHHTTCS---CC------CCCCEEEEEEEEECCC--------------------------------EEEEEEE
T ss_pred             eeccCc-cccccCc---eEecCCE-EEEEeCCCEEEEEECCCCcEEEEecCCC----------cccccccCCEEEEEecC
Confidence            211000 0000111   1112333 444556788999996 577766552110          12334566666666778


Q ss_pred             CEEEEEcC-CCceEEee
Q psy13998        267 NRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       267 ~~i~~~~~-~g~~~~~~  282 (319)
                      +.|+.||. +|+.+..+
T Consensus       140 g~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A          140 YTITMYDTKTRELRWNA  156 (369)
T ss_dssp             EEEECCCSSSSSCCCEE
T ss_pred             CEEEEEECCCCCEEEeE
Confidence            89999994 67765544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.34  E-value=0.00014  Score=56.73  Aligned_cols=227  Identities=11%  Similarity=0.101  Sum_probs=127.9

Q ss_pred             ceeeeecccCCCCCcCCCCcceEEcCCCc-EEEEeCC-------------CCeEEEeccccccccceeeEEecCceeeEE
Q psy13998         40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNS-IVVADSS-------------NHRVQVCFPHFDLKTNCVFLAFTWPRGIAV  105 (319)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~  105 (319)
                      ...+++...|.....+..-.+--++++|+ ++.+...             ...|+.    .++...... .+..-.+..+
T Consensus        37 ~~ly~~~~dg~~~~~l~~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~----i~~dg~~~~-~l~~~~~~~~  111 (302)
T 3s25_A           37 GRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR----IKRNGHGST-VLDPDPCIYA  111 (302)
T ss_dssp             TEEEEEETTSCSCEEEEEEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE----EETTSCCCE-EEECSCEEEE
T ss_pred             ceEEEEcCCCCCCEEccCCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE----EeCCCCcce-EeecCCccEE
Confidence            45566666665554443322334455565 4555433             346777    666544322 2222233455


Q ss_pred             cCCC-cEEEEc---CCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeee
Q psy13998        106 GPDN-SIVVAD---SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQS  180 (319)
Q Consensus       106 ~~~g-~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~  180 (319)
                      ++++ .+|++.   ..+..|++.+.+|.....+...     . .    .+++++ +.+|++......|.+.+++|...  
T Consensus       112 s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-----~-~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~--  179 (302)
T 3s25_A          112 SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-----Y-L----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE--  179 (302)
T ss_dssp             EEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-----C-C----CCSEEETTEEEEECTTTCCEEEEETTTTEE--
T ss_pred             EEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-----C-c----eEeeEECCEEEEEeCCCceEEEEECCCCCE--
Confidence            6655 577776   4567888888887655555321     1 1    233453 47788877678899988876421  


Q ss_pred             cCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-
Q psy13998        181 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-  257 (319)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-  257 (319)
                           ..+.     .    .+....+.|++ .+|++...+ ..|.+.+++|.....+..     ...     ..++|++ 
T Consensus       180 -----~~l~-----~----~~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-----~~~-----~~~~~~g~  235 (302)
T 3s25_A          180 -----ALFY-----D----CNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-----ANI-----EHYNVYGS  235 (302)
T ss_dssp             -----EEEE-----C----SCEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC-----SCE-----EEEEEETT
T ss_pred             -----EEEe-----C----CCccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-----CCc-----ceEEECCC
Confidence                 1110     0    11123355654 667776543 589999998876666521     111     2366666 


Q ss_pred             cEEEE-eCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        258 YISVG-DSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       258 ~~~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      .+|.+ ....+.|...+.+|...+.+..     .   .+.++.+.. +.+|.++...+.|
T Consensus       236 ~Iy~~~~~~~~~i~~~~~DG~~r~~l~~-----~---~~~~i~i~~-d~Iy~td~~~~~i  286 (302)
T 3s25_A          236 LIFYQRGGDNPALCVVKNDGTGFKELAK-----G---EFCNINVTS-QYVYFTDFVSNKE  286 (302)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCCEEEEE-----S---CEEEEEECS-SEEEEEETTTCCE
T ss_pred             EEEEEECCCCcEEEEEECCCCccEEeeC-----C---ccceEEEeC-CEEEEEECCCCeE
Confidence            45554 4556899999999876555521     1   233555543 3678887666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.23  E-value=0.0012  Score=53.29  Aligned_cols=215  Identities=15%  Similarity=0.185  Sum_probs=111.6

Q ss_pred             CCcEEEEeCCCCeEEEeccccccccceeeEEecCc---------eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEec
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP---------RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFG  135 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~  135 (319)
                      ++.++ .++.++.|..    ++..+++........         ....+. ++.+| .+..++.+..+| .+|+.+....
T Consensus       143 ~~~v~-v~~~~g~l~~----~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~-~g~~~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          143 DGLVL-IHTSNGQLQA----LNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAV-VGGDNGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             TTEEE-EECTTSEEEE----EETTTCCEEEEEECCC-----CCCCCCEEE-TTEEE-ECCTTTEEEEEETTTCCEEEEEE
T ss_pred             CCEEE-EEcCCCeEEE----EECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEE-EEcCCCEEEEEECCCCcEEEEEe
Confidence            34444 3456677877    777665554433211         122232 34444 456678999999 5788877664


Q ss_pred             CCCccCC-CCCC---c-eeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        136 SMGNKAG-QLEH---P-HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       136 ~~~~~~~-~~~~---~-~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      ....... ....   + ....+ .++.+|+. +.++.+..+|..+      |+.+.....        .....+.++ ++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~-~~~g~l~~~d~~t------G~~~w~~~~--------~~~~~~~~~-~~  278 (376)
T 3q7m_A          216 ISQATGSTEIDRLSDVDTTPVV-VNGVVFAL-AYNGNLTALDLRS------GQIMWKREL--------GSVNDFIVD-GN  278 (376)
T ss_dssp             CCC-----------CCCCCCEE-ETTEEEEE-CTTSCEEEEETTT------CCEEEEECC--------CCEEEEEEE-TT
T ss_pred             cccCCCCcccccccccCCCcEE-ECCEEEEE-ecCcEEEEEECCC------CcEEeeccC--------CCCCCceEE-CC
Confidence            3211000 0000   0 11112 24666665 4577899998863      344433321        122334443 55


Q ss_pred             cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCC
Q psy13998        211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSG  288 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~  288 (319)
                      .+|+... ++.++.+|. +|+.+.......     ........+. ++.+|+. ..++.|+.+| .+|+.+......   
T Consensus       279 ~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~-~~~l~v~-~~~g~l~~~d~~tG~~~~~~~~~---  347 (376)
T 3q7m_A          279 RIYLVDQ-NDRVMALTIDGGVTLWTQSDLL-----HRLLTSPVLY-NGNLVVG-DSEGYLHWINVEDGRFVAQQKVD---  347 (376)
T ss_dssp             EEEEEET-TCCEEEEETTTCCEEEEECTTT-----TSCCCCCEEE-TTEEEEE-CTTSEEEEEETTTCCEEEEEECC---
T ss_pred             EEEEEcC-CCeEEEEECCCCcEEEeecccC-----CCcccCCEEE-CCEEEEE-eCCCeEEEEECCCCcEEEEEecC---
Confidence            6666654 678999995 677766553111     1112222332 3555555 5678999999 578887766321   


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                        .......... .++.+|+.. .++.|..|
T Consensus       348 --~~~~~~~~~~-~~~~l~v~~-~~G~l~~~  374 (376)
T 3q7m_A          348 --SSGFQTEPVA-ADGKLLIQA-KDGTVYSI  374 (376)
T ss_dssp             --TTCBCSCCEE-ETTEEEEEB-TTSCEEEE
T ss_pred             --CCcceeCCEE-ECCEEEEEe-CCCEEEEE
Confidence              1111122222 366776654 45666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.22  E-value=0.00032  Score=54.69  Aligned_cols=197  Identities=10%  Similarity=0.033  Sum_probs=112.6

Q ss_pred             eeeecccCCCCCcCCCCcceEEcCCCc-EEEEe---CCCCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcC
Q psy13998         42 QFKIGSRGSEPGCFTWPRGIAVGPDNS-IVVAD---SSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADS  116 (319)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~v~~~~~g~-~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~  116 (319)
                      .+++...+.....+..-.+..++++|+ ++.+.   .....|+.    .++.......-.... ..++++++ .+|+++.
T Consensus        90 Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~----~~~dGs~~~~lt~~~-~~~~~~~g~~iy~t~~  164 (302)
T 3s25_A           90 LCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYR----IRIDGEEKKKIKNHY-LFTCNTSDRYFYYNNP  164 (302)
T ss_dssp             EEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEE----EETTSCCCEEEESSC-CCCSEEETTEEEEECT
T ss_pred             EEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEE----EECCCCCeEEEeCCC-ceEeeEECCEEEEEeC
Confidence            345555555544444445557777665 56665   45667777    555432222111111 13445555 5777877


Q ss_pred             CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCc
Q psy13998        117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNK  194 (319)
Q Consensus       117 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (319)
                      ....|.+.+.+|...+.+..     +    +....+.| .+.+|++...+ ..|.+.+++|..       ...+.     
T Consensus       165 g~~~Iy~~~l~g~~~~~l~~-----~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-------~~~Lt-----  223 (302)
T 3s25_A          165 KNGQLYRYDTASQSEALFYD-----C----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-------PVVLT-----  223 (302)
T ss_dssp             TTCCEEEEETTTTEEEEEEC-----S----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC-------CEECS-----
T ss_pred             CCceEEEEECCCCCEEEEeC-----C----CccceeeecCCEEEEEEcCCCcEEEEEECCCCC-------eEEEe-----
Confidence            67889999988776555521     1    12334566 45677776543 578888887642       11111     


Q ss_pred             CCCCCCceeEEEcCCC-cEEEE-eCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998        195 AGQLEHPHYIAVSNTN-RVIVS-DSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF  272 (319)
Q Consensus       195 ~~~~~~~~~~~~~~~g-~~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~  272 (319)
                      ..  ..   ..++|++ .+|++ ......|...+.+|...+.+.     ..   ....+.+. .+.+|.+....+.|...
T Consensus       224 ~~--~~---~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~-----~~---~~~~i~i~-~d~Iy~td~~~~~i~~~  289 (302)
T 3s25_A          224 EA--NI---EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA-----KG---EFCNINVT-SQYVYFTDFVSNKEYCT  289 (302)
T ss_dssp             CS--CE---EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE-----ES---CEEEEEEC-SSEEEEEETTTCCEEEE
T ss_pred             CC--Cc---ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee-----CC---ccceEEEe-CCEEEEEECCCCeEEEE
Confidence            00  01   2356655 56665 445678999999987655552     11   12355553 34789998877788887


Q ss_pred             cCCCce
Q psy13998        273 TPDGQF  278 (319)
Q Consensus       273 ~~~g~~  278 (319)
                      ..+|.-
T Consensus       290 ~~dGs~  295 (302)
T 3s25_A          290 STQNPD  295 (302)
T ss_dssp             ESSSCC
T ss_pred             ECCCCC
Confidence            777654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.16  E-value=0.00028  Score=58.41  Aligned_cols=126  Identities=16%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             CCCceeEEEeCCCe--EEEEeCCCCEEEEEecCCceeeecCceeeeecc---cCCcCCCCCCceeEEEcCC----CcEEE
Q psy13998        144 LEHPHYIAVSNTNR--VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS---MGNKAGQLEHPHYIAVSNT----NRVIV  214 (319)
Q Consensus       144 ~~~~~~l~~~~~g~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----g~~~v  214 (319)
                      +..|.+|++.|+|.  +||+.. .+.|++++.++....   ..+..+..   .+........+.+|+++|+    +.+|+
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~---~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv   88 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFK---EPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV   88 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCS---SCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeee---eeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence            46889999999985  888875 688999876553110   11111110   0000112345788999985    67777


Q ss_pred             EeCC--C----------CeEEEEeCCC-----------CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC------
Q psy13998        215 SDSN--N----------HRVQIFDVNG-----------RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG------  265 (319)
Q Consensus       215 ~~~~--~----------~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~------  265 (319)
                      +-+.  +          .+|..|..+.           +.+..+..    .........|+|+|||.+|++.+.      
T Consensus        89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~  164 (463)
T 2wg3_C           89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHRKHLGGQLLFGPDGFLYIILGDGMITLD  164 (463)
T ss_dssp             EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSSSSCEEEEEECTTSCEEEEECCTTCCHH
T ss_pred             EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCCcccCCcEeECCCCcEEEEeCCCCCCCC
Confidence            6432  1          2666676421           12222211    111234578999999999998654      


Q ss_pred             -----------CCEEEEEcCCCc
Q psy13998        266 -----------NNRIQIFTPDGQ  277 (319)
Q Consensus       266 -----------~~~i~~~~~~g~  277 (319)
                                 .++|..++++|.
T Consensus       165 ~~~~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          165 DMEEMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             HHHHCTTCCSCTTEEEEEBCCCC
T ss_pred             ccccccCcCCCCeeEEEEECCCC
Confidence                       256888887763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.14  E-value=0.002  Score=52.01  Aligned_cols=191  Identities=17%  Similarity=0.161  Sum_probs=99.3

Q ss_pred             CCcEEEEeCCCCeEEEeccccccccceeeEEecC-------------c-eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcE
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW-------------P-RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTF  130 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~-~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~  130 (319)
                      ++.+|+. +.++.|..    +|..+++.......             . ..++. .++.+|+. +.++.|+.+| .+|+.
T Consensus        53 ~~~v~~~-~~~g~v~a----~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~-~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAA-DRAGLVKA----LNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHVYIG-SEKAQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEE-CTTSEEEE----EETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEEEEE-ETTSEEEEEETTTCCE
T ss_pred             CCEEEEE-cCCCeEEE----EEccCCceeeeecCccccccccccCcccccCceE-eCCEEEEE-cCCCEEEEEECCCCCE
Confidence            4555554 55678888    88876665443222             1 11222 24556664 4578999999 67888


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      +.........      .....+. ++.+|+ .+.++.+..+|..+      |+.+.......... .........+. ++
T Consensus       126 ~W~~~~~~~~------~~~p~~~-~~~v~v-~~~~g~l~~~d~~t------G~~~W~~~~~~~~~-~~~~~~~~~~~-~~  189 (376)
T 3q7m_A          126 AWQTKVAGEA------LSRPVVS-DGLVLI-HTSNGQLQALNEAD------GAVKWTVNLDMPSL-SLRGESAPTTA-FG  189 (376)
T ss_dssp             EEEEECSSCC------CSCCEEE-TTEEEE-ECTTSEEEEEETTT------CCEEEEEECCC------CCCCCCEEE-TT
T ss_pred             EEEEeCCCce------EcCCEEE-CCEEEE-EcCCCeEEEEECCC------CcEEEEEeCCCCce-eecCCCCcEEE-CC
Confidence            8776433211      1112222 455555 55678999999753      34443332211100 00001112232 44


Q ss_pred             cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc----ccccCc-ceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998        211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE----GQLKFP-RGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF  282 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~~~~~-~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~  282 (319)
                      . ++.+..++.++.+|. +|+.+..........    ..+... ....+ .++.+|+. +.++.++.+|. +|+.+...
T Consensus       190 ~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~-~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          190 A-AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFAL-AYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             E-EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEE-CTTSCEEEEETTTCCEEEEE
T ss_pred             E-EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEE-ecCcEEEEEECCCCcEEeec
Confidence            4 444566889999996 677776653221100    000000 11112 24556655 45788999995 78877665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.12  E-value=1.7e-05  Score=57.51  Aligned_cols=107  Identities=11%  Similarity=0.122  Sum_probs=68.0

Q ss_pred             CCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-C------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE
Q psy13998        199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-R------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI  271 (319)
Q Consensus       199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~  271 (319)
                      .....++++|+|.+|++  .++.++..++.. .      .-+.++..     ....-..+.++++|.+|++  .++.|+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-----Gw~~F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-----GWNQFQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-----CGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-----ccccceEEEECCCCCEEEe--CCCEEEE
Confidence            45668999999999988  577899998632 1      12233211     1112367899999999999  4599999


Q ss_pred             EcC--CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998        272 FTP--DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI  316 (319)
Q Consensus       272 ~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i  316 (319)
                      +++  ++.--..................|.++|+|.+|+..  ++++
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            995  222100000000002233456889999999999988  5554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.11  E-value=0.0012  Score=57.80  Aligned_cols=121  Identities=10%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             eeeEEcC-CCcEEEEcCCCC-----------eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCCE
Q psy13998        101 RGIAVGP-DNSIVVADSSNH-----------RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHR  167 (319)
Q Consensus       101 ~~l~~~~-~g~~~~~~~~~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~  167 (319)
                      ...++.+ ++++|+.++.+.           .+.+||........+...  .........++++..++++|+.++ .+..
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVTGGNDAKK  266 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence            4567776 788888864321           578898433221111100  011112334577788999999987 3457


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CC-----CeEEEEeCCCCEEEE
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN-----HRVQIFDVNGRVITS  234 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~-----~~i~~~~~~~~~~~~  234 (319)
                      +.+||+....      .... .   .... ...-.++++.++|++|+.+. .+     ..+.+||+.......
T Consensus       267 v~~yd~~t~~------W~~~-~---~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          267 TSLYDSSSDS------WIPG-P---DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             EEEEEGGGTE------EEEC-C---CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             eEEecCcCCc------eeEC-C---CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence            9999987432      1111 0   0011 11123455667889999887 33     568899976544444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.10  E-value=0.0026  Score=54.58  Aligned_cols=164  Identities=12%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc---------eeeEEcC---CCc-EEEEcC------CCCe
Q psy13998         60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP---------RGIAVGP---DNS-IVVADS------SNHR  120 (319)
Q Consensus        60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~---~g~-~~~~~~------~~~~  120 (319)
                      ++++. ++++|+. +.++.|..    +|..+++...+....         ....+..   +|+ .++.+.      .++.
T Consensus       112 g~a~~-~~~v~~~-t~dg~l~A----lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~  185 (582)
T 1flg_A          112 GAAIY-GDKVFFG-TLDASVVA----LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGR  185 (582)
T ss_dssp             CCEEE-TTEEEEE-ETTTEEEE----EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCE
T ss_pred             ccEEE-CCEEEEE-eCCCEEEE----EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCE
Confidence            34443 4555554 45788888    888777665433211         1111221   122 344433      3689


Q ss_pred             EEEEc-CCCcEEEEecCCCcc--------------CC---------------------CCCCceeEEEeCC-CeEEEEeC
Q psy13998        121 VQVFQ-SDGTFVGKFGSMGNK--------------AG---------------------QLEHPHYIAVSNT-NRVIVSDS  163 (319)
Q Consensus       121 i~~~~-~~~~~~~~~~~~~~~--------------~~---------------------~~~~~~~l~~~~~-g~~~~~~~  163 (319)
                      |+.+| .+|+.+.........              .+                     .-..-..++++++ +.+|+...
T Consensus       186 v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~g  265 (582)
T 1flg_A          186 LFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAG  265 (582)
T ss_dssp             EEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCC
Confidence            99999 688888765432100              00                     0001124677774 56666553


Q ss_pred             C-------------------C----CEEEEEecCCceeeecCceeeeecccCCc---CCCCCCceeEEEc-CCC---cEE
Q psy13998        164 N-------------------N----HRVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVS-NTN---RVI  213 (319)
Q Consensus       164 ~-------------------~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g---~~~  213 (319)
                      .                   +    +.|..+|.++      |+.+..+......   ......|.-+... .+|   .++
T Consensus       266 n~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T------G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v  339 (582)
T 1flg_A          266 NPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS------GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKAT  339 (582)
T ss_dssp             CBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT------CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEE
T ss_pred             CCCcccCcccccCCCcccccCCcccceEEEEeCCC------CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEE
Confidence            1                   2    5788888763      4555544321100   0011223323332 466   367


Q ss_pred             EEeCCCCeEEEEeC-CCCEEEEe
Q psy13998        214 VSDSNNHRVQIFDV-NGRVITSF  235 (319)
Q Consensus       214 v~~~~~~~i~~~~~-~~~~~~~~  235 (319)
                      +....++.++++|. +|+.+..+
T Consensus       340 ~~~~~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          340 AHADRNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEECCCceEEEEECCCCCEeccc
Confidence            77888999999995 67777655

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.96  E-value=0.0039  Score=49.28  Aligned_cols=228  Identities=7%  Similarity=-0.038  Sum_probs=118.0

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT  129 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~  129 (319)
                      ...+|.+++ +++|+.+ ..+.|..     ..+.+..+...       ..+..+.+.+++.+|+++. ++.|+.-+..|+
T Consensus        81 ~~~~i~~~~-~~~~~~g-~~g~i~~-----S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~  152 (327)
T 2xbg_A           81 RFNSVSFQG-NEGWIVG-EPPIMLH-----TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK  152 (327)
T ss_dssp             EEEEEEEET-TEEEEEE-ETTEEEE-----ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTS
T ss_pred             cEEEEEecC-CeEEEEE-CCCeEEE-----ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC
Confidence            356788875 6677664 3455544     11112222211       1345677666677777664 455554433344


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      .-.....     .....+..+++.+++.+++.+......+-.|..+.      .... ..     .........++++++
T Consensus       153 tW~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~------tW~~-~~-----~~~~~~~~~~~~~~~  215 (327)
T 2xbg_A          153 NWQALVQ-----EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQT------AWEP-HN-----RTTSRRLHNMGFTPD  215 (327)
T ss_dssp             SEEEEEC-----SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCS------SCEE-EE-----CCSSSCEEEEEECTT
T ss_pred             CCEEeec-----CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCC------ceeE-CC-----CCCCCccceeEECCC
Confidence            3222221     11235678888888888877654333332332222      1111 10     011234567888888


Q ss_pred             CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCC
Q psy13998        210 NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG  288 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~  288 (319)
                      +++|++.. ++.+++.+.+ |+....+....  .........+++.+++.+|+++. ++.|++-...|+.-..+...   
T Consensus       216 g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~DgG~tW~~~~~~---  288 (327)
T 2xbg_A          216 GRLWMIVN-GGKIAFSDPDNSENWGELLSPL--RRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQDGGQTWQQDVDV---  288 (327)
T ss_dssp             SCEEEEET-TTEEEEEETTEEEEECCCBCTT--SSCCSCEEEEEESSSSCEEEEES-TTCEEEESSTTSSCEECGGG---
T ss_pred             CCEEEEeC-CceEEEecCCCCCeeEeccCCc--ccCCcceEEEEecCCCEEEEEeC-CCeEEEeCCCCcccEEcCcc---
Confidence            88887765 5677776544 43322221110  00112356788888888888875 46664444445544433210   


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRIQ  317 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~  317 (319)
                      ........++.+.+++.+++++ .++.|.
T Consensus       289 ~~~~~~~~~v~~~~~~~~~~~G-~~G~i~  316 (327)
T 2xbg_A          289 KKVPSNFYKILFFSPDQGFILG-QKGILL  316 (327)
T ss_dssp             TTSSSCCCEEEEEETTEEEEEC-STTEEE
T ss_pred             CCCCCCeEEEEEECCCceEEEc-CCceEE
Confidence            0112346778887666666554 556654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.81  E-value=0.0076  Score=47.64  Aligned_cols=223  Identities=6%  Similarity=-0.049  Sum_probs=116.7

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe--------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF--------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDG  128 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  128 (319)
                      .+.+|.+.+++..|+++. .+.|..     ..+.+..+...        ....+|.+++ +.+|+++ ..+.|+.-+..|
T Consensus        37 ~~~~v~~~~~~~~~~~G~-~g~i~~-----s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g-~~g~i~~S~DgG  108 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGV-NATLME-----TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVG-EPPIMLHTTDGG  108 (327)
T ss_dssp             CEEEEEESSSSCEEEEET-TTEEEE-----ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEE-ETTEEEEESSTT
T ss_pred             cEEEEEECCCCcEEEEcC-CCeEEE-----eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEE-CCCeEEEECCCC
Confidence            567888887788888654 566544     11111111111        1346778875 5677664 345565533334


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      +.-......   ......+..+++.+++.+|+.+. .+.+..-.-.|.      ......      ........++++++
T Consensus       109 ~tW~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~------tW~~~~------~~~~~~~~~~~~~~  172 (327)
T 2xbg_A          109 QSWSQIPLD---PKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK------NWQALV------QEAIGVMRNLNRSP  172 (327)
T ss_dssp             SSCEECCCC---TTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTS------SEEEEE------CSCCCCEEEEEECT
T ss_pred             CCceECccc---cCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC------CCEEee------cCCCcceEEEEEcC
Confidence            432222211   00112356777777788777764 444443221121      111111      01122456788888


Q ss_pred             CCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccC
Q psy13998        209 TNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWG  286 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~  286 (319)
                      ++.+++++.. +.+++-+ ..|.....+..     ........+++++++++|+++. ++.+++.+.+ |+....+....
T Consensus       173 ~~~~~~~g~~-G~~~~S~d~gG~tW~~~~~-----~~~~~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~  245 (327)
T 2xbg_A          173 SGEYVAVSSR-GSFYSTWEPGQTAWEPHNR-----TTSRRLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPL  245 (327)
T ss_dssp             TSCEEEEETT-SSEEEEECTTCSSCEEEEC-----CSSSCEEEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTT
T ss_pred             CCcEEEEECC-CcEEEEeCCCCCceeECCC-----CCCCccceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCc
Confidence            8888877654 4555543 32443333311     1123456788899998887764 5777776434 54433332110


Q ss_pred             CCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998        287 SGDGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                        ......+.++++.+++.+|+++..
T Consensus       246 --~~~~~~~~~v~~~~~~~~~~~g~~  269 (327)
T 2xbg_A          246 --RRNSVGFLDLAYRTPNEVWLAGGA  269 (327)
T ss_dssp             --SSCCSCEEEEEESSSSCEEEEEST
T ss_pred             --ccCCcceEEEEecCCCEEEEEeCC
Confidence              011224677888888888887653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.49  E-value=0.0033  Score=52.71  Aligned_cols=109  Identities=17%  Similarity=0.297  Sum_probs=70.1

Q ss_pred             CCCCceeEEEcC-CCcEEEEeCC---------------------CCeEEEEeCCC------CE---EEEeC-CCCC----
Q psy13998        197 QLEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNG------RV---ITSFG-SEGS----  240 (319)
Q Consensus       197 ~~~~~~~~~~~~-~g~~~v~~~~---------------------~~~i~~~~~~~------~~---~~~~~-~~~~----  240 (319)
                      .+..|-.++++| ++.+|++...                     .|.|+.|..++      ..   +..+. ....    
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            345788999998 6788887543                     27899997532      11   11111 1100    


Q ss_pred             ---------CcccccCcceEEEcCCCcEEE-EeCC-----------CCEEEEEcC-CCceEEeecccCCCCCCCCCcceE
Q psy13998        241 ---------EEGQLKFPRGVAVDDQGYISV-GDSG-----------NNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGV  298 (319)
Q Consensus       241 ---------~~~~~~~~~~i~~~~~g~~~v-~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l  298 (319)
                               ....++.|..|+|+++|.+|+ ++..           .+.|+.+++ +|++...+.     ......++++
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-----~P~~aEpnGi  536 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-----GPIGCEVTGI  536 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-----CCTTCEEEEE
T ss_pred             cccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-----CCCCccccCC
Confidence                     012478899999999999999 5432           347888887 566544441     1223568999


Q ss_pred             EEccCCc-EEEEe
Q psy13998        299 AVMSNGN-ILVCD  310 (319)
Q Consensus       299 ~~~~~g~-~~v~~  310 (319)
                      +|+||++ +||+-
T Consensus       537 afSPD~ktLfV~v  549 (592)
T 4a9v_A          537 SFSPDQKTLFVGI  549 (592)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EECCCCCEEEEEE
Confidence            9999998 55543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.47  E-value=0.023  Score=44.18  Aligned_cols=216  Identities=13%  Similarity=0.112  Sum_probs=107.2

Q ss_pred             CCcEEEEeC-CC-----CeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcCCCc
Q psy13998         66 DNSIVVADS-SN-----HRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQSDGT  129 (319)
Q Consensus        66 ~g~~~~~~~-~~-----~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~  129 (319)
                      ++.+++.++ .+     ..+.+    ++..+.....  .++.+   .+++. .++.+|+.++.+     ..+.+||....
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEK----YDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEE----EETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEE----EcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCC
Confidence            455666665 22     35666    6665443322  11111   22333 357888887643     46889994332


Q ss_pred             E---EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        130 F---VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       130 ~---~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      .   -..+...   ... ..-.+++.. ++++|+.++.+     ..+.+||+....-.    .+...      +......
T Consensus        89 ~~~~W~~~~~~---p~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~----~~~~~------p~~r~~~  153 (301)
T 2vpj_A           89 EDGVWYSVAPM---NVR-RGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWS----MLGDM------QTAREGA  153 (301)
T ss_dssp             TTCCCEEECCC---SSC-CBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEE----EEEEC------SSCCBSC
T ss_pred             CCCeeEECCCC---CCC-ccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEE----ECCCC------CCCcccc
Confidence            2   2222211   111 111233333 68899887643     46888888754221    11111      1111112


Q ss_pred             eeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEE
Q psy13998        202 HYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQI  271 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~  271 (319)
                       +++. .++++|+.+..+     ..+.+||+.......+....   ...... +++. -++++|+.++.+     ..+.+
T Consensus       154 -~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~  226 (301)
T 2vpj_A          154 -GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA---TKRSGA-GVAL-LNDHIYVVGGFDGTAHLSSVEA  226 (301)
T ss_dssp             -EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS---SCCBSC-EEEE-ETTEEEEECCBCSSSBCCCEEE
T ss_pred             -eEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC---cccccc-eEEE-ECCEEEEEeCCCCCcccceEEE
Confidence             2222 267888887643     56899998766655553211   111111 2222 256888888753     57899


Q ss_pred             EcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       272 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ||.....-..+...   +.. ..-.+++. -++++|+.++.+
T Consensus       227 yd~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~i~v~GG~~  263 (301)
T 2vpj_A          227 YNIRTDSWTTVTSM---TTP-RCYVGATV-LRGRLYAIAGYD  263 (301)
T ss_dssp             EETTTTEEEEECCC---SSC-CBSCEEEE-ETTEEEEECCBC
T ss_pred             EeCCCCcEEECCCC---CCc-ccceeEEE-ECCEEEEEcCcC
Confidence            99765554444211   111 11122222 367888888754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.46  E-value=0.05  Score=47.88  Aligned_cols=230  Identities=9%  Similarity=0.073  Sum_probs=114.2

Q ss_pred             CCCcEEEEeCCC----CeEEEeccccccccceeeEEe--------cCc---eeeEEcC-CCcEEEEcCCC------CeEE
Q psy13998         65 PDNSIVVADSSN----HRVQVCFPHFDLKTNCVFLAF--------TWP---RGIAVGP-DNSIVVADSSN------HRVQ  122 (319)
Q Consensus        65 ~~g~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~--------~~~---~~l~~~~-~g~~~~~~~~~------~~i~  122 (319)
                      .++.+|+.++.+    ..+.+    |+..+.......        ..+   ++++..+ ++++|+.++.+      +.+.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~----yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~  471 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQ----LSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW  471 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEE----EEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred             ECCEEEEECCCCCCCcCcEEE----EECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence            567888887743    45777    676654332211        111   3444444 77899887643      3578


Q ss_pred             EEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC--EEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        123 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      +||.....-..+...   . ....-++.+...++++|+.++.++  .+.+||+....-.      . ....+..+.....
T Consensus       472 ~yd~~t~~W~~~~~~---p-~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~------~-~~~~g~~p~~r~~  540 (695)
T 2zwa_A          472 IFDMKTREWSMIKSL---S-HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK------D-VTPKDEFFQNSLV  540 (695)
T ss_dssp             EEETTTTEEEECCCC---S-BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE------E-CCCSSGGGGSCCB
T ss_pred             EEeCCCCcEEECCCC---C-CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE------E-ccCCCCCCCcccc
Confidence            888655433333211   1 111123444434789999887543  6888988754211      1 1111111111122


Q ss_pred             ceeEEEcCC-CcEEEEeCC-------CCeEEEEeCCCCE------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-
Q psy13998        201 PHYIAVSNT-NRVIVSDSN-------NHRVQIFDVNGRV------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-  265 (319)
Q Consensus       201 ~~~~~~~~~-g~~~v~~~~-------~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-  265 (319)
                      ..+++++.+ +++|+.++.       .+.+.+||+....      ...+...   ......-.+++...++++|+.++. 
T Consensus       541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p~~~R~~~~~~~~~~~~iyv~GG~~  617 (695)
T 2zwa_A          541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---PLFQRYGSQIKYITPRKLLIVGGTS  617 (695)
T ss_dssp             SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---GGGCCBSCEEEEEETTEEEEECCBC
T ss_pred             eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---CCCCcccceEEEeCCCEEEEECCcc
Confidence            233555655 788888764       2568999965433      2332110   000001123344344788988873 


Q ss_pred             -------CCEEEEEcCCCceEEeecccCCC---CCCCCCcceEEEccCCcEEEEeCC
Q psy13998        266 -------NNRIQIFTPDGQFLRAFGCWGSG---DGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       266 -------~~~i~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                             ...+.+||+..........+...   ......-.+.+...+|++|+.|+.
T Consensus       618 ~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          618 PSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             SSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             CCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence                   35689999765443333111000   000011133444456688888774

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.29  E-value=0.039  Score=42.93  Aligned_cols=215  Identities=9%  Similarity=-0.011  Sum_probs=108.5

Q ss_pred             CcEEEEeCC--CCeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEEEec
Q psy13998         67 NSIVVADSS--NHRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVGKFG  135 (319)
Q Consensus        67 g~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~  135 (319)
                      +.+++.++.  ...+.+    ||..+......  ++.+   .+++. -++.+|+.++.+    ..+.+||.....-..+.
T Consensus        12 ~~l~~~GG~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~   86 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRY----FNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL   86 (306)
T ss_dssp             CEEEEEECCSSTTSEEE----EETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeCCCCCceEEE----ecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence            445665543  356777    67665443221  1111   22333 357788887644    67889996554333332


Q ss_pred             CCCccCCCCCCceeEEEeCCCeEEEEeCCC------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        136 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      ...   .. ..-.+++. -++++|+.++.+      ..+.+||+....-.      . ...   .+..... .+++. .+
T Consensus        87 ~~p---~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~------~-~~~---~p~~r~~-~~~~~-~~  149 (306)
T 3ii7_A           87 GPP---TP-RDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWH------T-KPS---MLTQRCS-HGMVE-AN  149 (306)
T ss_dssp             CCS---SC-CBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEE------E-ECC---CSSCCBS-CEEEE-ET
T ss_pred             CCC---cc-ccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceE------e-CCC---CcCCcce-eEEEE-EC
Confidence            211   11 11122332 368899887654      45888888754221      1 111   0111111 12222 36


Q ss_pred             CcEEEEeCC---------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEEEcCC
Q psy13998        210 NRVIVSDSN---------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQIFTPD  275 (319)
Q Consensus       210 g~~~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~~~~~  275 (319)
                      +++|+.+..         ...+.+||+.......+....   ..... .+++.. ++++|+.++.+     ..+.+||+.
T Consensus       150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~  224 (306)
T 3ii7_A          150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI---EARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIK  224 (306)
T ss_dssp             TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS---SCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETT
T ss_pred             CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc---chhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCC
Confidence            788888753         356899998766655553211   11111 123332 56888887643     468899976


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ...-..+...   +..... .+++.. ++++|+.++.+
T Consensus       225 ~~~W~~~~~~---p~~r~~-~~~~~~-~~~i~v~GG~~  257 (306)
T 3ii7_A          225 LNEWKMVSPM---PWKGVT-VKCAAV-GSIVYVLAGFQ  257 (306)
T ss_dssp             TTEEEECCCC---SCCBSC-CEEEEE-TTEEEEEECBC
T ss_pred             CCcEEECCCC---CCCccc-eeEEEE-CCEEEEEeCcC
Confidence            5544444211   111111 222222 67888888754

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.18  E-value=0.011  Score=49.60  Aligned_cols=115  Identities=15%  Similarity=0.207  Sum_probs=69.1

Q ss_pred             CCCceeEEEeC-CCeEEEEeCC---------------------CCEEEEEecCCceee-ec--Cceeeeeccc-------
Q psy13998        144 LEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNGRVFQ-SD--GTFVGKFGSM-------  191 (319)
Q Consensus       144 ~~~~~~l~~~~-~g~~~~~~~~---------------------~~~i~~~~~~~~~~~-~~--~~~~~~~~~~-------  191 (319)
                      ..+|..++++| ++++|++.+.                     .|.|+.|...+.-.. ..  -.+...-+..       
T Consensus       383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~  462 (592)
T 4a9v_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence            45789999998 7899998543                     267887866432000 00  0111000000       


Q ss_pred             --C----CcCCCCCCceeEEEcCCCcEEE-EeCC-----------CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEE
Q psy13998        192 --G----NKAGQLEHPHYIAVSNTNRVIV-SDSN-----------NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVA  252 (319)
Q Consensus       192 --~----~~~~~~~~~~~~~~~~~g~~~v-~~~~-----------~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~  252 (319)
                        +    .....+..|..|+++++|.||+ ++..           ++.++.+++ +|+....+.     ......|++++
T Consensus       463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-----~P~~aEpnGia  537 (592)
T 4a9v_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-----GPIGCEVTGIS  537 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-----CCTTCEEEEEE
T ss_pred             ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-----CCCCccccCCE
Confidence              0    0112467899999999999999 6542           347888997 455443331     11234689999


Q ss_pred             EcCCCc-EEEEe
Q psy13998        253 VDDQGY-ISVGD  263 (319)
Q Consensus       253 ~~~~g~-~~v~~  263 (319)
                      |+||++ +||+-
T Consensus       538 fSPD~ktLfV~v  549 (592)
T 4a9v_A          538 FSPDQKTLFVGI  549 (592)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999986 55553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.07  E-value=0.07  Score=41.59  Aligned_cols=217  Identities=9%  Similarity=0.056  Sum_probs=109.7

Q ss_pred             CCCcEEEEeCC----CCeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCC----C-----CeEEEEcC
Q psy13998         65 PDNSIVVADSS----NHRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSS----N-----HRVQVFQS  126 (319)
Q Consensus        65 ~~g~~~~~~~~----~~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~----~-----~~i~~~~~  126 (319)
                      -++.+++.++.    -..+.+    ||..+.....  .++.+   .+++.. ++.+|+.++.    +     ..+.+||.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEA----YNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEE----EETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCCEEEEEeCcCCCCcceEEE----EcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            35667776652    235667    6665544322  11111   233332 5788888765    2     46888996


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      ....-..+....   .. ..-.+++.. ++++|+.++.+     ..+.+||+....-..       ...   .+..... 
T Consensus        98 ~~~~W~~~~~~p---~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-------~~~---~p~~r~~-  161 (308)
T 1zgk_A           98 MTNQWSPCAPMS---VP-RNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHL-------VAP---MLTRRIG-  161 (308)
T ss_dssp             TTTEEEECCCCS---SC-CBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEE-------CCC---CSSCCBS-
T ss_pred             CCCeEeECCCCC---cC-ccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeE-------CCC---CCccccc-
Confidence            555444432211   11 111233333 68899887632     457788877532211       100   0111111 


Q ss_pred             eeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEE
Q psy13998        202 HYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQI  271 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~  271 (319)
                      .+++.. ++++|+.+..+     +.+.+||+.......+....   ..... .+++.. ++++|+.++.+     ..+.+
T Consensus       162 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~  235 (308)
T 1zgk_A          162 VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---TIRSG-AGVCVL-HNCIYAAGGYDGQDQLNSVER  235 (308)
T ss_dssp             CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---SCCBS-CEEEEE-TTEEEEECCBCSSSBCCCEEE
T ss_pred             eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---Ccccc-ceEEEE-CCEEEEEeCCCCCCccceEEE
Confidence            222222 67888887643     56899998766555543211   11111 123332 57888888753     56899


Q ss_pred             EcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       272 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      ||+....-..+...   +. ...-.+++. -++++|+.++.+
T Consensus       236 yd~~~~~W~~~~~~---p~-~r~~~~~~~-~~~~i~v~GG~~  272 (308)
T 1zgk_A          236 YDVETETWTFVAPM---KH-RRSALGITV-HQGRIYVLGGYD  272 (308)
T ss_dssp             EETTTTEEEECCCC---SS-CCBSCEEEE-ETTEEEEECCBC
T ss_pred             EeCCCCcEEECCCC---CC-CccceEEEE-ECCEEEEEcCcC
Confidence            99765554444211   11 111122333 267888888754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.05  E-value=0.075  Score=41.62  Aligned_cols=213  Identities=11%  Similarity=0.141  Sum_probs=103.5

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeE-Eec--Cc--eeeEEcCCCcEEEEcCCC----C-------eEEEEcCCCcEE
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFL-AFT--WP--RGIAVGPDNSIVVADSSN----H-------RVQVFQSDGTFV  131 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~--~~--~~l~~~~~g~~~~~~~~~----~-------~i~~~~~~~~~~  131 (319)
                      .+++.++.  .+..    ||..+..... ...  .+  ..-+...++.+|+.++..    +       .+.+||.....-
T Consensus        17 ~i~~~GG~--~~~~----yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   90 (318)
T 2woz_A           17 LILLVNDT--AAVA----YDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW   90 (318)
T ss_dssp             EEEEECSS--EEEE----EETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred             hhhhcccc--ceEE----ECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence            45555442  4667    6766554333 111  11  122334567888887631    1       277888655444


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      ..+....   .. ..-.+++.. ++++|+.++.+       ..+.+||+....-.      .. ..   .+..... .++
T Consensus        91 ~~~~~~p---~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~------~~-~~---~p~~r~~-~~~  154 (318)
T 2woz_A           91 VGLPPLP---SA-RCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS------EV-KN---LPIKVYG-HNV  154 (318)
T ss_dssp             EECSCBS---SC-BCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE------EE-CC---CSSCEES-CEE
T ss_pred             EECCCCC---cc-ccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEe------EC-CC---CCCcccc-cEE
Confidence            4332211   11 111233333 67888887643       34777887653221      11 00   0111111 223


Q ss_pred             EEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEEEc
Q psy13998        205 AVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQIFT  273 (319)
Q Consensus       205 ~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~~~  273 (319)
                      +. .++++|+.+..      .+.+.+||+.......+.....   .... .+++. -++++|+.++.+     ..+.+||
T Consensus       155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd  228 (318)
T 2woz_A          155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT---PRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFD  228 (318)
T ss_dssp             EE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS---CCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEE
T ss_pred             EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC---Cccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEE
Confidence            33 46788888763      2468999987665555532111   1111 12333 256888887632     4677888


Q ss_pred             CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      +....-..+...   +.. ..-.+++. -++++|+.++.+
T Consensus       229 ~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~i~v~GG~~  263 (318)
T 2woz_A          229 LKTNKWEVMTEF---PQE-RSSISLVS-LAGSLYAIGGFA  263 (318)
T ss_dssp             TTTCCEEECCCC---SSC-CBSCEEEE-ETTEEEEECCBC
T ss_pred             CCCCeEEECCCC---CCc-ccceEEEE-ECCEEEEECCee
Confidence            655444433211   111 11122332 356888887754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.99  E-value=0.08  Score=41.05  Aligned_cols=180  Identities=11%  Similarity=0.126  Sum_probs=92.2

Q ss_pred             CCcEEEEcCCC-----CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCce
Q psy13998        108 DNSIVVADSSN-----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRV  177 (319)
Q Consensus       108 ~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~  177 (319)
                      ++.+|+.++.+     ..+.+||.....-..+.....   . ..-.+++. -++++|+.++.+     ..+.+||+....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD---R-RSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS---C-CBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc---c-ccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            67888887643     468889965544444332111   1 11123333 367888887643     357778876532


Q ss_pred             eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------CCeEEEEeCCCCEEEEeCCCCCCcccccCcce
Q psy13998        178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRG  250 (319)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (319)
                      -.      . ....   +..... .+++. -++++|+.+..       ...+.+||+.......+....   ...... +
T Consensus       136 W~------~-~~~~---p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~-~  199 (302)
T 2xn4_A          136 WF------H-VAPM---NTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS---TRRSGA-G  199 (302)
T ss_dssp             EE------E-ECCC---SSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS---SCCBSC-E
T ss_pred             Ee------e-cCCC---CCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc---cccccc-c
Confidence            21      1 1110   111111 22222 26788887753       346899998766555553211   111111 2


Q ss_pred             EEEcCCCcEEEEeCCC-----CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998        251 VAVDDQGYISVGDSGN-----NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH  314 (319)
Q Consensus       251 i~~~~~g~~~v~~~~~-----~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~  314 (319)
                      ++. -++++|+.++.+     +.+.+||.....-..+....    ....-.+++. -++++|+.++.++
T Consensus       200 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~-~~~~i~v~GG~~~  262 (302)
T 2xn4_A          200 VGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN----MCRRNAGVCA-VNGLLYVVGGDDG  262 (302)
T ss_dssp             EEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEE-ETTEEEEECCBCS
T ss_pred             EEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC----CccccCeEEE-ECCEEEEECCcCC
Confidence            333 256888888753     47899997655444442111    1111122332 3678888887553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.98  E-value=0.092  Score=46.72  Aligned_cols=110  Identities=10%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             CCcceEEc-CCCcEEEEe-CCC----CeEEEeccccccccc-eeeE-Eec-CceeeEEcCCCc-EEEEcCCC----CeEE
Q psy13998         57 WPRGIAVG-PDNSIVVAD-SSN----HRVQVCFPHFDLKTN-CVFL-AFT-WPRGIAVGPDNS-IVVADSSN----HRVQ  122 (319)
Q Consensus        57 ~~~~v~~~-~~g~~~~~~-~~~----~~v~~~~~~~~~~~~-~~~~-~~~-~~~~l~~~~~g~-~~~~~~~~----~~i~  122 (319)
                      ...+.+++ |||++++-. ..+    ..|++    +++.++ ..+. .+. ...+++|+|||+ ++++....    ..|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v----~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEF----KRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEE----EETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEE----EECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            45678999 999855432 222    35888    787765 4221 111 235789999986 44443211    3677


Q ss_pred             EEcCCCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC---CCCEEEEEecCC
Q psy13998        123 VFQSDGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNG  175 (319)
Q Consensus       123 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~  175 (319)
                      .++..+.   ....+...     ......++.+++||+.++...   ....|.++++.+
T Consensus       251 ~~~lgt~~~~~~lv~~~~-----~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEH-----NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEETTSCGGGCEEEEECC-----CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EEECCCCchhcEEEEecC-----CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            7775432   12222111     112235678999997654332   345677788764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.95  E-value=0.14  Score=45.55  Aligned_cols=192  Identities=8%  Similarity=0.074  Sum_probs=91.0

Q ss_pred             ceeeEEc-CCCcEEE-EcCC----CCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCC----CE
Q psy13998        100 PRGIAVG-PDNSIVV-ADSS----NHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN----HR  167 (319)
Q Consensus       100 ~~~l~~~-~~g~~~~-~~~~----~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~----~~  167 (319)
                      ..+.+++ |||+.++ +...    ...|+++|.++. ..  +..  ...   ....+++|+|||+ ++++....    ..
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~--~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD--KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC--CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc--ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            4567999 9997443 3222    235999995433 21  100  000   1124688999984 44443221    35


Q ss_pred             EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC---CCCeEEEEeCCCC--EE--EEeCCCCC
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNGR--VI--TSFGSEGS  240 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---~~~~i~~~~~~~~--~~--~~~~~~~~  240 (319)
                      |..+++.+...  ....+...       .......++.++|+|+.++...   ....|++++.++.  ..  +.+..   
T Consensus       249 v~~~~lgt~~~--~~~lv~~~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~---  316 (751)
T 2xe4_A          249 VWRHVMGKLQS--EDVCLYEE-------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP---  316 (751)
T ss_dssp             EEEEETTSCGG--GCEEEEEC-------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC---
T ss_pred             EEEEECCCCch--hcEEEEec-------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec---
Confidence            77777764210  00111110       0111234678999997554322   3457888886542  12  33311   


Q ss_pred             CcccccCcceEEEcCCCcEEEEeCC----CCEEEEEcCCC--ceEE-eecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        241 EEGQLKFPRGVAVDDQGYISVGDSG----NNRIQIFTPDG--QFLR-AFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~~g~~~v~~~~----~~~i~~~~~~g--~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                        ........+.+...+.+|+....    ...|+.++.++  +... .+.     ......+.++.+. .+.++++...+
T Consensus       317 --~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-----~~~~~~l~~~~~~-~~~lv~~~~~~  388 (751)
T 2xe4_A          317 --REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-----HSEDVFMESIAVR-SNYLVVAGRRA  388 (751)
T ss_dssp             --CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-----CCSSEEEEEEEEC-SSEEEEEEEET
T ss_pred             --CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-----CCCCcEEEEEEEE-CCEEEEEEEeC
Confidence              11111233333334456665543    34788888652  2211 121     1111133445554 23566666666


Q ss_pred             CeEEe
Q psy13998        314 HRIQV  318 (319)
Q Consensus       314 ~~i~v  318 (319)
                      +..++
T Consensus       389 g~~~l  393 (751)
T 2xe4_A          389 GLTRI  393 (751)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            65444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.82  E-value=0.12  Score=40.24  Aligned_cols=189  Identities=11%  Similarity=0.098  Sum_probs=100.6

Q ss_pred             CCCcEEEEeCCC----CeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC------CeEEEEcCCCc
Q psy13998         65 PDNSIVVADSSN----HRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN------HRVQVFQSDGT  129 (319)
Q Consensus        65 ~~g~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~  129 (319)
                      .++++|+.++.+    ..+.+    |+..+......  +..+   .+++.. ++++|+.++.+      ..+.+||....
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDC----YNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEE----EETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             ECCEEEEEeCCCCCCcceEEE----EeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            367888887644    57777    77765543322  1211   223322 67888887654      46889996554


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC---------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      .-..+....   .. ..-.+++. .++++|+.++.         ...+.+||+....-.      . ...   .+.....
T Consensus       129 ~W~~~~~~p---~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~------~-~~~---~p~~r~~  193 (306)
T 3ii7_A          129 SWHTKPSML---TQ-RCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT------E-LCP---MIEARKN  193 (306)
T ss_dssp             EEEEECCCS---SC-CBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE------E-ECC---CSSCCBS
T ss_pred             ceEeCCCCc---CC-cceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE------E-CCC---ccchhhc
Confidence            433332211   11 11122333 36788888753         355788888754221      1 110   0111111


Q ss_pred             ceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-----CCEEE
Q psy13998        201 PHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-----NNRIQ  270 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-----~~~i~  270 (319)
                       .+++.. ++++|+.+..+     ..+.+||+.......+....   ...... +++.. ++++|+.++.     ...+.
T Consensus       194 -~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~  266 (306)
T 3ii7_A          194 -HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP---WKGVTV-KCAAV-GSIVYVLAGFQGVGRLGHIL  266 (306)
T ss_dssp             -CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS---CCBSCC-EEEEE-TTEEEEEECBCSSSBCCEEE
T ss_pred             -ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC---CCccce-eEEEE-CCEEEEEeCcCCCeeeeeEE
Confidence             223332 67888887642     46899998766555553211   111112 22332 5688998874     36789


Q ss_pred             EEcCCCceEE
Q psy13998        271 IFTPDGQFLR  280 (319)
Q Consensus       271 ~~~~~g~~~~  280 (319)
                      +||+....-.
T Consensus       267 ~yd~~~~~W~  276 (306)
T 3ii7_A          267 EYNTETDKWV  276 (306)
T ss_dssp             EEETTTTEEE
T ss_pred             EEcCCCCeEE
Confidence            9997654433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.69  E-value=0.14  Score=39.55  Aligned_cols=188  Identities=12%  Similarity=0.144  Sum_probs=98.2

Q ss_pred             CCCcEEEEeCCC-----CeEEEeccccccccce---eeE--EecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcC
Q psy13998         65 PDNSIVVADSSN-----HRVQVCFPHFDLKTNC---VFL--AFTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQS  126 (319)
Q Consensus        65 ~~g~~~~~~~~~-----~~v~~~~~~~~~~~~~---~~~--~~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~  126 (319)
                      .++++|+.++.+     ..+.+    ++..+..   ...  .+..+   .+++.. ++++|+.++.+     ..+.+||.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~----~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~  135 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVEC----LDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDP  135 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEE----EETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             ECCEEEEEcCCCCCccCceEEE----EECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcC
Confidence            367888887643     46778    7766544   222  11111   223332 57888887643     46889995


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      ....-..+...   ... ..-.+++. .++++|+.++.+     ..+.+||+....-.      .. ..   .+......
T Consensus       136 ~~~~W~~~~~~---p~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~------~~-~~---~p~~r~~~  200 (301)
T 2vpj_A          136 NIDQWSMLGDM---QTA-REGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT------NV-TP---MATKRSGA  200 (301)
T ss_dssp             TTTEEEEEEEC---SSC-CBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEE------EE-CC---CSSCCBSC
T ss_pred             CCCeEEECCCC---CCC-cccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEE------eC-CC---CCcccccc
Confidence            54433333211   111 11123333 368899887643     45888888754221      11 10   01111111


Q ss_pred             eeEEEcCCCcEEEEeCC-----CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEE
Q psy13998        202 HYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQI  271 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~  271 (319)
                      . ++. -++++|+.+..     ...+.+||+.......+.....   .... .+++.. ++++|+.++.+     ..+.+
T Consensus       201 ~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~  273 (301)
T 2vpj_A          201 G-VAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT---PRCY-VGATVL-RGRLYAIAGYDGNSLLSSIEC  273 (301)
T ss_dssp             E-EEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS---CCBS-CEEEEE-TTEEEEECCBCSSSBEEEEEE
T ss_pred             e-EEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC---cccc-eeEEEE-CCEEEEEcCcCCCcccccEEE
Confidence            2 222 25788888764     3578999987666555532111   1111 122322 56888888754     46788


Q ss_pred             EcCCCceE
Q psy13998        272 FTPDGQFL  279 (319)
Q Consensus       272 ~~~~g~~~  279 (319)
                      ||+....-
T Consensus       274 yd~~~~~W  281 (301)
T 2vpj_A          274 YDPIIDSW  281 (301)
T ss_dssp             EETTTTEE
T ss_pred             EcCCCCeE
Confidence            88654433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.60  E-value=0.2  Score=39.94  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=48.1

Q ss_pred             CCcEEEEeCC-CCeEEEecccccccc-ceeeEEe---c-Cc---eeeEEcCCCcEEEEcCC-C---------CeEEEEcC
Q psy13998         66 DNSIVVADSS-NHRVQVCFPHFDLKT-NCVFLAF---T-WP---RGIAVGPDNSIVVADSS-N---------HRVQVFQS  126 (319)
Q Consensus        66 ~g~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~~~---~-~~---~~l~~~~~g~~~~~~~~-~---------~~i~~~~~  126 (319)
                      ++++|+.++. ...+.+    ++..+ ...+..+   . .+   .+++.. ++++|+.++. +         ..+.+||.
T Consensus        19 ~~~iyv~GG~~~~~~~~----~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~   93 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYK----LDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNP   93 (357)
T ss_dssp             TTEEEEECGGGTTCEEE----EETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred             CCEEEEEeCcCCCeEEE----EccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence            6788887753 346777    66643 1223322   2 12   223332 5788888765 1         46888996


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN  165 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  165 (319)
                      ....-..+....  + ....-.+++. .++++|+.++.+
T Consensus        94 ~~~~W~~~~~~~--p-~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           94 KTNSWVKLMSHA--P-MGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTTEEEECSCCC--S-SCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCCcEEECCCCC--C-cccccceEEE-ECCEEEEEeCcC
Confidence            554434333221  0 1111123333 578999988753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.60  E-value=0.18  Score=39.39  Aligned_cols=212  Identities=11%  Similarity=0.095  Sum_probs=104.7

Q ss_pred             EEEEeCCCCeEEEeccccccccceeeE-EecCc----eeeEEcCCCcEEEEcCC-----C------CeEEEEcCCCcEEE
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNCVFL-AFTWP----RGIAVGPDNSIVVADSS-----N------HRVQVFQSDGTFVG  132 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~----~~l~~~~~g~~~~~~~~-----~------~~i~~~~~~~~~~~  132 (319)
                      +++.++  ..+..    ||..+..... .++.|    ...+...++++|+.++.     .      ..+.+||.....-.
T Consensus         7 l~~~GG--~~~~~----yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            7 IFMISE--EGAVA----YDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEET--TEEEE----EETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred             EEEEcC--CceEE----ECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence            455555  56778    7776655332 22111    12233346788887762     1      13778886554433


Q ss_pred             EecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI  204 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (319)
                      .+....   .. ..-.+++.. ++++|+.++.+        +.+.+||+....-.      . ...   .+..... .++
T Consensus        81 ~~~~~p---~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~------~-~~~---~p~~r~~-~~~  144 (315)
T 4asc_A           81 GMPPLP---SP-RCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG------E-SDP---LPYVVYG-HTV  144 (315)
T ss_dssp             ECCCBS---SC-EESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE------E-CCC---CSSCCBS-CEE
T ss_pred             ECCCCC---cc-hhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe------E-CCC---CCCcccc-eeE
Confidence            332111   00 111233333 67888887632        45788888753221      1 100   0111111 222


Q ss_pred             EEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC-----EEEEEc
Q psy13998        205 AVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN-----RIQIFT  273 (319)
Q Consensus       205 ~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~-----~i~~~~  273 (319)
                      +. .++++|+.+..      .+.+.+||+....-..+....   ...... +++. -++++|+.++.++     .+.+||
T Consensus       145 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          145 LS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ---TARSLF-GATV-HDGRIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             EE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS---SCCBSC-EEEE-ETTEEEEEEEECSSSEEEEEEEEE
T ss_pred             EE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC---Cchhce-EEEE-ECCEEEEEeccCCCCccceEEEEE
Confidence            22 46688888765      246899998766555543211   111111 2222 2568888876433     688899


Q ss_pred             CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      +....-..+...   + ....-.+++. -++++|+.++.+
T Consensus       219 ~~~~~W~~~~~~---p-~~r~~~~~~~-~~~~l~v~GG~~  253 (315)
T 4asc_A          219 ITDNKWAPFEAF---P-QERSSLSLVS-LVGTLYAIGGFA  253 (315)
T ss_dssp             TTTTEEEEECCC---S-SCCBSCEEEE-ETTEEEEEEEEE
T ss_pred             CCCCeEEECCCC---C-CcccceeEEE-ECCEEEEECCcc
Confidence            765544444211   1 1111122333 366888887653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.46  E-value=0.42  Score=42.10  Aligned_cols=193  Identities=10%  Similarity=0.079  Sum_probs=97.5

Q ss_pred             CCCcEEEEcCCC----CeEEEEcCCCcEEEEec-C-CCccCCCCCCceeEEEeC-CCeEEEEeCCC------CEEEEEec
Q psy13998        107 PDNSIVVADSSN----HRVQVFQSDGTFVGKFG-S-MGNKAGQLEHPHYIAVSN-TNRVIVSDSNN------HRVQIFDV  173 (319)
Q Consensus       107 ~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~------~~i~~~~~  173 (319)
                      .++.+|+.++.+    ..+.+||.....-..+. . +.........-++++... ++++|+.++.+      +.+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            467788887642    46888984333222222 1 000000111224455554 78999987643      35778887


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC--eEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVITSFGSEGSEEGQLKFPRGV  251 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (319)
                      ....-.      .. .   ..+. ...-.+.+.-.++++|+.++.++  .+.+||+.......+...+..+........+
T Consensus       476 ~t~~W~------~~-~---~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~  544 (695)
T 2zwa_A          476 KTREWS------MI-K---SLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL  544 (695)
T ss_dssp             TTTEEE------EC-C---CCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred             CCCcEE------EC-C---CCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence            753211      11 0   0011 11112334434788999877543  6999998766655553221111111122335


Q ss_pred             EEcCC-CcEEEEeCC-------CCEEEEEcCCCce------EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998        252 AVDDQ-GYISVGDSG-------NNRIQIFTPDGQF------LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN  313 (319)
Q Consensus       252 ~~~~~-g~~~v~~~~-------~~~i~~~~~~g~~------~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~  313 (319)
                      +++.+ +++|+.++.       .+.+.+||+....      ...+...   ......-.+++...++++|+.++.+
T Consensus       545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p~~~R~~~~~~~~~~~~iyv~GG~~  617 (695)
T 2zwa_A          545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---PLFQRYGSQIKYITPRKLLIVGGTS  617 (695)
T ss_dssp             EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---GGGCCBSCEEEEEETTEEEEECCBC
T ss_pred             EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---CCCCcccceEEEeCCCEEEEECCcc
Confidence            65655 789998875       2568999954433      2222110   0011112234444447888888743

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.41  E-value=0.13  Score=43.99  Aligned_cols=108  Identities=16%  Similarity=0.302  Sum_probs=68.2

Q ss_pred             CCCCceeEEEcC-CCcEEEEeCC---------------------CCeEEEEeCCCC-----E----EEEeC-CCC-----
Q psy13998        197 QLEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNGR-----V----ITSFG-SEG-----  239 (319)
Q Consensus       197 ~~~~~~~~~~~~-~g~~~v~~~~---------------------~~~i~~~~~~~~-----~----~~~~~-~~~-----  239 (319)
                      .+..|-++.++| ++.+|++...                     .|.|+.|.+++.     .    +..+. ...     
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            456778899997 6788887653                     267888874321     1    11111 100     


Q ss_pred             --------CCcccccCcceEEEcCCCcEEEEeCCC------------CEEEEEcCC-CceEEeecccCCCCCCCCCcceE
Q psy13998        240 --------SEEGQLKFPRGVAVDDQGYISVGDSGN------------NRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGV  298 (319)
Q Consensus       240 --------~~~~~~~~~~~i~~~~~g~~~v~~~~~------------~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l  298 (319)
                              .....+..|..|+|++.|++|++...+            +.+...++. |++.+.+..     .....++++
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-----P~gaE~TG~  536 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-----PIGCEVTGI  536 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-----CTTCEEEEE
T ss_pred             ccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-----CCCccCcCe
Confidence                    012246789999999999999987643            467777754 555444421     123468999


Q ss_pred             EEccCCc-EEEE
Q psy13998        299 AVMSNGN-ILVC  309 (319)
Q Consensus       299 ~~~~~g~-~~v~  309 (319)
                      +|+||++ +|+.
T Consensus       537 ~fspDg~tlfvn  548 (592)
T 3zwu_A          537 SFSPDQKTLFVG  548 (592)
T ss_dssp             EECTTSSEEEEE
T ss_pred             eECCCCCEEEEE
Confidence            9999998 4443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.36  E-value=0.28  Score=39.00  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=27.3

Q ss_pred             CCcEEEEeCC-C---------CeEEEeccccccccceeeE--Eec-Cc---eeeEEcCCCcEEEEcCCC
Q psy13998         66 DNSIVVADSS-N---------HRVQVCFPHFDLKTNCVFL--AFT-WP---RGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        66 ~g~~~~~~~~-~---------~~v~~~~~~~~~~~~~~~~--~~~-~~---~~l~~~~~g~~~~~~~~~  118 (319)
                      ++++|+.++. +         ..+.+    ||..+.....  ... .+   .+++. .++++|+.++.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~----yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHK----YNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEE----EETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEE----EeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            6788888765 1         35777    7776544332  111 11   22333 467888887643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.20  E-value=0.31  Score=37.96  Aligned_cols=193  Identities=14%  Similarity=0.121  Sum_probs=97.7

Q ss_pred             EEcCCCcEEEEeCC-----C------CeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC-------
Q psy13998         62 AVGPDNSIVVADSS-----N------HRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN-------  118 (319)
Q Consensus        62 ~~~~~g~~~~~~~~-----~------~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~-------  118 (319)
                      +...++++|+.++.     .      ..+.+    ||..+.....  .++.+   .+++.. ++++|+.++.+       
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~  115 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ----FDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERC  115 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEE----EETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCB
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEE----ecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcc
Confidence            33457788887762     1      12666    6766544322  11222   223332 57888887632       


Q ss_pred             -CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------CCEEEEEecCCceeeecCceeeeeccc
Q psy13998        119 -HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSM  191 (319)
Q Consensus       119 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~  191 (319)
                       ..+.+||.....-..+...   +.. ..-.+++. .++++|+.++.      .+.+.+||+....-.      . ... 
T Consensus       116 ~~~~~~~d~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~------~-~~~-  182 (315)
T 4asc_A          116 LDSVMCYDRLSFKWGESDPL---PYV-VYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK------E-LAP-  182 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCC---SSC-CBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEE------E-CCC-
T ss_pred             cceEEEECCCCCcEeECCCC---CCc-ccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEE------E-CCC-
Confidence             4688999655443333211   111 11122333 46789988765      246888888754221      1 100 


Q ss_pred             CCcCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998        192 GNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~  266 (319)
                        .+....... ++. -++++|+.+..+     ..+.+||+....-..+.....   .... .+++.. ++++|+.++.+
T Consensus       183 --~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~-~~~~~~-~~~l~v~GG~~  253 (315)
T 4asc_A          183 --MQTARSLFG-ATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ---ERSS-LSLVSL-VGTLYAIGGFA  253 (315)
T ss_dssp             --CSSCCBSCE-EEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS---CCBS-CEEEEE-TTEEEEEEEEE
T ss_pred             --CCCchhceE-EEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC---cccc-eeEEEE-CCEEEEECCcc
Confidence              011111122 222 266888877543     368899987666555532111   1111 123332 56888887643


Q ss_pred             --------------CEEEEEcCCCceEEe
Q psy13998        267 --------------NRIQIFTPDGQFLRA  281 (319)
Q Consensus       267 --------------~~i~~~~~~g~~~~~  281 (319)
                                    +.+.+||+....-..
T Consensus       254 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          254 TLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             ccCcCCccccccccCcEEEecCCCChhhh
Confidence                          347788876544333

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.16  E-value=0.32  Score=37.77  Aligned_cols=190  Identities=14%  Similarity=0.136  Sum_probs=99.3

Q ss_pred             CCcEEEEeCC----C-----CeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcC
Q psy13998         66 DNSIVVADSS----N-----HRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQS  126 (319)
Q Consensus        66 ~g~~~~~~~~----~-----~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~  126 (319)
                      ++++|+.++.    +     ..+.+    ||..+......  +..+   .+++.. ++++|+.++.+     ..+.+||.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~  144 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDC----YNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEP  144 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEE----EETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEET
T ss_pred             CCEEEEECCCcCCCCCCeecceEEE----ECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECC
Confidence            6788888765    2     35667    67665443221  1111   223332 67888887632     46888996


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      ....-..+...   ... ..-.+++.. ++++|+.++.+     ..+.+||+....-...       ..   .+..... 
T Consensus       145 ~~~~W~~~~~~---p~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-------~~---~p~~r~~-  208 (308)
T 1zgk_A          145 ERDEWHLVAPM---LTR-RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-------TA---MNTIRSG-  208 (308)
T ss_dssp             TTTEEEECCCC---SSC-CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-------CC---CSSCCBS-
T ss_pred             CCCeEeECCCC---Ccc-ccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-------CC---CCCcccc-
Confidence            55443333211   111 111233333 68899887643     4588888875422111       00   0111111 


Q ss_pred             eeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-----CCEEEE
Q psy13998        202 HYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-----NNRIQI  271 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-----~~~i~~  271 (319)
                      .+++.. ++++|+.+..+     ..+.+||+.......+....   ..... .+++.. ++++|+.++.     ...+.+
T Consensus       209 ~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~  282 (308)
T 1zgk_A          209 AGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK---HRRSA-LGITVH-QGRIYVLGGYDGHTFLDSVEC  282 (308)
T ss_dssp             CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS---SCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEE
T ss_pred             ceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC---CCccc-eEEEEE-CCEEEEEcCcCCCcccceEEE
Confidence            223332 67888887643     56999998766655553211   11111 123332 5688888764     356888


Q ss_pred             EcCCCceEEee
Q psy13998        272 FTPDGQFLRAF  282 (319)
Q Consensus       272 ~~~~g~~~~~~  282 (319)
                      ||+....-..+
T Consensus       283 yd~~~~~W~~~  293 (308)
T 1zgk_A          283 YDPDTDTWSEV  293 (308)
T ss_dssp             EETTTTEEEEE
T ss_pred             EcCCCCEEeec
Confidence            88765444333

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.06  E-value=0.36  Score=37.34  Aligned_cols=190  Identities=10%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             CCcEEEEeCCC-----CeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcCCCcE
Q psy13998         66 DNSIVVADSSN-----HRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQSDGTF  130 (319)
Q Consensus        66 ~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~  130 (319)
                      ++++|+.++.+     ..+.+    ||..+......  +..+   .+++.. ++++|+.++.+     ..+.+||.....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDS----YDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEE----EETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEE----ECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            67888887643     35777    77765543321  1111   233332 57888877543     357888865544


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      -..+....   .. ..-.+++. -++++|+.++.       ...+.+||+....-.      .. ..   .+..... .+
T Consensus       136 W~~~~~~p---~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~------~~-~~---~p~~r~~-~~  199 (302)
T 2xn4_A          136 WFHVAPMN---TR-RSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT------YI-AE---MSTRRSG-AG  199 (302)
T ss_dssp             EEEECCCS---SC-CBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE------EE-CC---CSSCCBS-CE
T ss_pred             EeecCCCC---Cc-ccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE------EC-CC---Ccccccc-cc
Confidence            33332211   11 11123333 36788888753       245788888754221      11 00   0111111 12


Q ss_pred             EEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEEEc
Q psy13998        204 IAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQIFT  273 (319)
Q Consensus       204 ~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~~~  273 (319)
                      ++. -++++|+.+..+     +.+.+||+.......+.....  .. .. .+++. -++++|+.++.+     ..+.+||
T Consensus       200 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r-~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd  273 (302)
T 2xn4_A          200 VGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CR-RN-AGVCA-VNGLLYVVGGDDGSCNLASVEYYN  273 (302)
T ss_dssp             EEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--CC-BS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             EEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--cc-cc-CeEEE-ECCEEEEECCcCCCcccccEEEEc
Confidence            222 257888887643     468999987666555532211  11 11 12333 257888888754     3589999


Q ss_pred             CCCceEEee
Q psy13998        274 PDGQFLRAF  282 (319)
Q Consensus       274 ~~g~~~~~~  282 (319)
                      +....-..+
T Consensus       274 ~~~~~W~~~  282 (302)
T 2xn4_A          274 PTTDKWTVV  282 (302)
T ss_dssp             TTTTEEEEC
T ss_pred             CCCCeEEEC
Confidence            765554444

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=95.86  E-value=0.18  Score=43.07  Aligned_cols=115  Identities=14%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             CCCCceeEEEeC-CCeEEEEeCC---------------------CCEEEEEecCCceeeecCceee---eecc-------
Q psy13998        143 QLEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNGRVFQSDGTFVG---KFGS-------  190 (319)
Q Consensus       143 ~~~~~~~l~~~~-~g~~~~~~~~---------------------~~~i~~~~~~~~~~~~~~~~~~---~~~~-------  190 (319)
                      .+.++..+.++| ++++|++.+.                     .|.|..|..++..... ..+..   ....       
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a-~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHAS-KTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTC-SEEEEEEEEECCCTTTSTT
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCcccc-ceeEEEEEEeccCcccccc
Confidence            356788999997 7899988653                     2567777654321000 00000   0000       


Q ss_pred             -------cCCcCCCCCCceeEEEcCCCcEEEEeCC------------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998        191 -------MGNKAGQLEHPHYIAVSNTNRVIVSDSN------------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV  251 (319)
Q Consensus       191 -------~~~~~~~~~~~~~~~~~~~g~~~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (319)
                             .......+..|-.|+|++.|+||++...            ++.+..+++....++.+....    ....++++
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P----~gaE~TG~  536 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP----IGCEVTGI  536 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC----TTCEEEEE
T ss_pred             cccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC----CCccCcCe
Confidence                   0001234668899999999999987643            346777776533344442211    12457899


Q ss_pred             EEcCCCcEEEE
Q psy13998        252 AVDDQGYISVG  262 (319)
Q Consensus       252 ~~~~~g~~~v~  262 (319)
                      +|+||++.++.
T Consensus       537 ~fspDg~tlfv  547 (592)
T 3zwu_A          537 SFSPDQKTLFV  547 (592)
T ss_dssp             EECTTSSEEEE
T ss_pred             eECCCCCEEEE
Confidence            99999864444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.61  E-value=0.59  Score=36.44  Aligned_cols=189  Identities=12%  Similarity=0.109  Sum_probs=94.6

Q ss_pred             EcCCCcEEEEeCC----CC-------eEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC-------C
Q psy13998         63 VGPDNSIVVADSS----NH-------RVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN-------H  119 (319)
Q Consensus        63 ~~~~g~~~~~~~~----~~-------~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~-------~  119 (319)
                      ...++++|+.++.    ++       .+.+    +|..+.....  .+..+   .+++.. ++++|+.++.+       .
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~  127 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQ----LDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLD  127 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEE----EETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEE----EeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccc
Confidence            3457888888772    11       2666    6665444322  11222   233333 57888887643       3


Q ss_pred             eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------CCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                      .+.+||.....-..+...   ... ..-.+++. .++++|+.++.      .+.+.+||+....-.      .. ...  
T Consensus       128 ~~~~yd~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~------~~-~~~--  193 (318)
T 2woz_A          128 SVLCYDPVAAKWSEVKNL---PIK-VYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK------DL-APM--  193 (318)
T ss_dssp             EEEEEETTTTEEEEECCC---SSC-EESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE------EE-CCC--
T ss_pred             eEEEEeCCCCCEeECCCC---CCc-ccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE------EC-CCC--
Confidence            588888655443333211   100 11122333 46889988763      245888888754221      11 100  


Q ss_pred             cCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC--
Q psy13998        194 KAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN--  266 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~--  266 (319)
                       +..... .+++. -++++|+.+..+     ..+.+||+.......+.....   .... .+++. -++++|+.++.+  
T Consensus       194 -p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~-~~~~~-~~~~i~v~GG~~~~  265 (318)
T 2woz_A          194 -KTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ---ERSS-ISLVS-LAGSLYAIGGFAMI  265 (318)
T ss_dssp             -SSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS---CCBS-CEEEE-ETTEEEEECCBCCB
T ss_pred             -CCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC---cccc-eEEEE-ECCEEEEECCeecc
Confidence             111111 22333 256888876532     467889976655444422111   1111 12332 356888887643  


Q ss_pred             ------------CEEEEEcCCCce
Q psy13998        267 ------------NRIQIFTPDGQF  278 (319)
Q Consensus       267 ------------~~i~~~~~~g~~  278 (319)
                                  ..+.+||+....
T Consensus       266 ~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          266 QLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             C----CCBCCBCCCEEEEETTTTE
T ss_pred             CCCCceeccceeeeEEEEeCCCCE
Confidence                        457888865443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.60  E-value=0.013  Score=48.94  Aligned_cols=77  Identities=9%  Similarity=0.120  Sum_probs=53.5

Q ss_pred             CCceeEEEeCCCeEEEE-eCCCCEEEEEecCCcee-------eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998        145 EHPHYIAVSNTNRVIVS-DSNNHRVQIFDVNGRVF-------QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD  216 (319)
Q Consensus       145 ~~~~~l~~~~~g~~~~~-~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  216 (319)
                      ..|+++.++|||++++. +..+.++.+++.+...-       .+.......       ...-..|...+|+++|+.|.+-
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-------~e~GlGPlHt~Fd~~G~aYTtl  395 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-------PELGLGPLHTTFDGRGNAYTTL  395 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-------CBCCSCEEEEEECSSSEEEEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-------ccCCCcccEEEECCCCceEeee
Confidence            57899999999977665 45678899998863110       111111111       1123467889999999999999


Q ss_pred             CCCCeEEEEeCC
Q psy13998        217 SNNHRVQIFDVN  228 (319)
Q Consensus       217 ~~~~~i~~~~~~  228 (319)
                      .-+..|..|+.+
T Consensus       396 fidSqvvkWni~  407 (638)
T 3sbq_A          396 FIDSQVVKWNME  407 (638)
T ss_dssp             TTTTEEEEEEHH
T ss_pred             eecceEEEEecc
Confidence            999999999954

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.27  E-value=0.12  Score=40.87  Aligned_cols=73  Identities=11%  Similarity=0.170  Sum_probs=38.4

Q ss_pred             CCcEEEEc-CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeE----EE-e----CCCeEEEEeCCCCEEEEEecCCc
Q psy13998        108 DNSIVVAD-SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI----AV-S----NTNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus       108 ~g~~~~~~-~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l----~~-~----~~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      ++.+++.. ..++.++.++ .+|.....+..+...   ...|...    .+ +    ..+..+++++.++++..+|+.  
T Consensus        55 ~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv---~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~--  129 (339)
T 2be1_A           55 TYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV---STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML--  129 (339)
T ss_dssp             SSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH---TTCSEEEECC----------CCEEEEECEEEEEEEEEETT--
T ss_pred             CCcEEEEEECCCCEEEEEECCCCcEEeeeccccce---eccccccCCCceeecccccccCCEEEEEecCCEEEEEECC--
Confidence            34566665 5789999999 556444433221110   0111110    01 0    034455566778888888876  


Q ss_pred             eeeecCceeeeec
Q psy13998        177 VFQSDGTFVGKFG  189 (319)
Q Consensus       177 ~~~~~~~~~~~~~  189 (319)
                          .|+.+..+.
T Consensus       130 ----tG~~~W~~~  138 (339)
T 2be1_A          130 ----NGEIISAFG  138 (339)
T ss_dssp             ----TCCEEEEES
T ss_pred             ----CCcEEEEEe
Confidence                345655553

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.38  Score=37.92  Aligned_cols=114  Identities=13%  Similarity=0.197  Sum_probs=60.0

Q ss_pred             cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEE---EeCCCeEEEEe-CCCCEEEEEecCCceeeecCce
Q psy13998        110 SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIA---VSNTNRVIVSD-SNNHRVQIFDVNGRVFQSDGTF  184 (319)
Q Consensus       110 ~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~g~~~~~~-~~~~~i~~~~~~~~~~~~~~~~  184 (319)
                      .+++.++.++.|+.+| .+|+....+....     ...+....   ...++..++.. ..+|.+..++..+.      ..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-----~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G------~~   79 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-----FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG------LQ   79 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG-----SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE------EE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc-----cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC------cE
Confidence            3455566788999999 7888888875430     01111100   00234566555 57888888876532      11


Q ss_pred             eeeecccCCcCCCCCCcee----EEE-cC----CCcEEEEeCCCCeEEEEe-CCCCEEEEeCC
Q psy13998        185 VGKFGSMGNKAGQLEHPHY----IAV-SN----TNRVIVSDSNNHRVQIFD-VNGRVITSFGS  237 (319)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~----~~~-~~----~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~  237 (319)
                      ...+......   ...|..    ..+ ++    .+..+++++.+++++.+| .+|+.+..+..
T Consensus        80 ~~~~~~~~lv---~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           80 KLPLSIRQLV---STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             EEEEEHHHHH---TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             Eeeeccccce---eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1111110000   011111    011 11    344566677789999999 47888888753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.16  E-value=0.025  Score=47.37  Aligned_cols=67  Identities=9%  Similarity=0.032  Sum_probs=50.2

Q ss_pred             CCCcceEEcCCCcEEEE-eCCCCeEEEeccccccccc------ee-------eEE---ecCceeeEEcCCCcEEEEcCCC
Q psy13998         56 TWPRGIAVGPDNSIVVA-DSSNHRVQVCFPHFDLKTN------CV-------FLA---FTWPRGIAVGPDNSIVVADSSN  118 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~-~~~~~~v~~~~~~~~~~~~------~~-------~~~---~~~~~~l~~~~~g~~~~~~~~~  118 (319)
                      ..|+++.++|||++++. +-.+.++.+    ++..+.      +.       ..+   -..|...+|+++|+.|.+-.-+
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV----~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfid  398 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSM----IAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFID  398 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEE----EEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEE----EEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeec
Confidence            78999999999996555 456788888    655421      11       111   1267889999999999998889


Q ss_pred             CeEEEEcC
Q psy13998        119 HRVQVFQS  126 (319)
Q Consensus       119 ~~i~~~~~  126 (319)
                      ..|..|+.
T Consensus       399 SqvvkWni  406 (638)
T 3sbq_A          399 SQVVKWNM  406 (638)
T ss_dssp             TEEEEEEH
T ss_pred             ceEEEEec
Confidence            99999983

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.06  E-value=1.9  Score=34.75  Aligned_cols=192  Identities=11%  Similarity=0.012  Sum_probs=91.8

Q ss_pred             CCCcceEEcC--CCcEEEEeCCC--C-eEEEeccccccccceeeEEe------------------cCceeeEEcC---CC
Q psy13998         56 TWPRGIAVGP--DNSIVVADSSN--H-RVQVCFPHFDLKTNCVFLAF------------------TWPRGIAVGP---DN  109 (319)
Q Consensus        56 ~~~~~v~~~~--~g~~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~---~g  109 (319)
                      ..+.+|+++|  ++.+|+.....  + .|..    .+- .+..+..+                  ..+.++++++   .+
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~----s~D-~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~  129 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFR----SDD-GGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG  129 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEE----ESS-TTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEE----eCC-CCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence            4578999998  67788775432  1 4544    111 01111111                  1244678876   45


Q ss_pred             cEEEEcCCCCeEEEEcCCCcEEEEecCCC-cc------------CCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEecC
Q psy13998        110 SIVVADSSNHRVQVFQSDGTFVGKFGSMG-NK------------AGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVN  174 (319)
Q Consensus       110 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~  174 (319)
                      .+|+.. ..+.|++.+..|+.-..+.... ..            ......+..|.++|  .+.+|+... .+.+.+.+-.
T Consensus       130 ~l~~g~-~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~Dg  207 (394)
T 3b7f_A          130 TWYAGT-SPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDA  207 (394)
T ss_dssp             CEEEEE-ETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESST
T ss_pred             EEEEEe-cCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCC
Confidence            666654 3456777765555433321100 00            00112456888887  356776543 3445554433


Q ss_pred             CceeeecCceeeeecc-cC-CcC----CCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998        175 GRVFQSDGTFVGKFGS-MG-NKA----GQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~-~~-~~~----~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  246 (319)
                      |+...      ..... .. ..+    .....+..|++++.  +.+|+..  .+.|++.+..|+....+... .......
T Consensus       208 G~tW~------~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~tW~~~~~~-l~~~~~~  278 (394)
T 3b7f_A          208 GTDWK------PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREGVWKRIGDA-MPREVGD  278 (394)
T ss_dssp             TSSCE------ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTTEEECGGGG-SCTTTCS
T ss_pred             CCCce------ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCCcceECCCC-CCCCCcc
Confidence            32111      11000 00 000    00123677888886  5666654  34577777666655544210 0000001


Q ss_pred             CcceEEEcCC--CcEEEEe
Q psy13998        247 FPRGVAVDDQ--GYISVGD  263 (319)
Q Consensus       247 ~~~~i~~~~~--g~~~v~~  263 (319)
                      ....++++|.  +.+|+..
T Consensus       279 ~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          279 IGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             CEEEEEECSSCTTCEEEEE
T ss_pred             ceEEEEECCCCCCEEEEEe
Confidence            2346788753  5688764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=89.96  E-value=6.6  Score=31.61  Aligned_cols=203  Identities=10%  Similarity=-0.006  Sum_probs=98.4

Q ss_pred             CceeeEEcC--CCcEEEEcCCC--C-eEEEEcCCCcEEEEecCCC-ccCC-------CCCCceeEEEeC---CCeEEEEe
Q psy13998         99 WPRGIAVGP--DNSIVVADSSN--H-RVQVFQSDGTFVGKFGSMG-NKAG-------QLEHPHYIAVSN---TNRVIVSD  162 (319)
Q Consensus        99 ~~~~l~~~~--~g~~~~~~~~~--~-~i~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~l~~~~---~g~~~~~~  162 (319)
                      .+.+|+++|  .+.+|++....  + .|...+..|+.-..+.... ....       ....+.++++++   .+.+|+..
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~  135 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT  135 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe
Confidence            467899998  56788775432  1 5666655554333332110 0000       112456788886   45666654


Q ss_pred             CCCCEEEEEecCCceeeecCceeeeecccCC----------cCCCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCC
Q psy13998        163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN----------KAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGR  230 (319)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~  230 (319)
                       ..+.|.+.+-.|.....    +........          ..........|.++|.  +.+|+... .+.|++.+..|+
T Consensus       136 -~~ggl~~S~DgG~tW~~----~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~  209 (394)
T 3b7f_A          136 -SPQGLFRSTDHGASWEP----VAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGT  209 (394)
T ss_dssp             -ETTEEEEESSTTSBCEE----CHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTS
T ss_pred             -cCCcEEEEcCCCCCeEE----CcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCC
Confidence             34566655444432110    000000000          0001123467888873  46777654 345777665565


Q ss_pred             EEEEeCCCCCC---c----ccccCcceEEEcCC--CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEc
Q psy13998        231 VITSFGSEGSE---E----GQLKFPRGVAVDDQ--GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       231 ~~~~~~~~~~~---~----~~~~~~~~i~~~~~--g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  301 (319)
                      ....+......   .    .....+..|++++.  +.+|+...  +.|++.+..|+....+...- ..........++++
T Consensus       210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D~G~tW~~~~~~l-~~~~~~~~~~i~~~  286 (394)
T 3b7f_A          210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDRREGVWKRIGDAM-PREVGDIGFPIVVH  286 (394)
T ss_dssp             SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEETTTTEEECGGGGS-CTTTCSCEEEEEEC
T ss_pred             CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCCCCCcceECCCCC-CCCCccceEEEEEC
Confidence            44443211000   0    00123678899886  56777653  55777776676655542100 00000234567777


Q ss_pred             c--CCcEEEEe
Q psy13998        302 S--NGNILVCD  310 (319)
Q Consensus       302 ~--~g~~~v~~  310 (319)
                      |  .+.+|+..
T Consensus       287 p~~~~~l~~~t  297 (394)
T 3b7f_A          287 QRDPRTVWVFP  297 (394)
T ss_dssp             SSCTTCEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            5  34577653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=82.73  E-value=18  Score=29.57  Aligned_cols=125  Identities=9%  Similarity=0.097  Sum_probs=69.4

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCc------------EEEEecCCCccCCCCCCceeEEEeCC---CeEEEEe
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGT------------FVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSD  162 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~~---g~~~~~~  162 (319)
                      .+..+.++|+|++++.-+ ...|.+.. +.+.            ..+.+............+..+.|+|-   +..+++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            466799999999776654 55788777 4221            11122211110111345788899984   4567777


Q ss_pred             CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEe-CCCCeEEEEe
Q psy13998        163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSD-SNNHRVQIFD  226 (319)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~-~~~~~i~~~~  226 (319)
                      ..|+.|++||+......+. .+.......+. ......+.+++|.+++ .+|+.. ...|.|+-+-
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~-d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGL-DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEES-CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCC-CcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            7899999999974211111 00000000010 1222556789999877 566533 4567887664

>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}

Probab=82.38  E-value=12  Score=30.00  Aligned_cols=77  Identities=14%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             CCCc--EEEEeCCCC--eEEEEeCC-CCEEEEeCCCCCCcccccCcc-eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEe
Q psy13998        208 NTNR--VIVSDSNNH--RVQIFDVN-GRVITSFGSEGSEEGQLKFPR-GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRA  281 (319)
Q Consensus       208 ~~g~--~~v~~~~~~--~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~  281 (319)
                      .+|.  ++.-.....  .|.++|.+ ++.+.++.....++.....+. ++-+...+.+|+++.....|.+++..|+.+..
T Consensus        36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~G~~~~k  115 (369)
T 3s9j_A           36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQGEIIRN  115 (369)
T ss_dssp             ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTTCCEEEE
T ss_pred             cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCCceEEEE
Confidence            4453  444555667  99999974 555667655444444555563 46666777999999888899999999999887


Q ss_pred             ecc
Q psy13998        282 FGC  284 (319)
Q Consensus       282 ~~~  284 (319)
                      +..
T Consensus       116 ~~~  118 (369)
T 3s9j_A          116 YNF  118 (369)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            643

>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}

Probab=81.04  E-value=17  Score=29.09  Aligned_cols=77  Identities=12%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             CCCeE--EEEeCCCC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCce-eEEEcCCCcEEEEeCCCCeEEEEeCC
Q psy13998        154 NTNRV--IVSDSNNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH-YIAVSNTNRVIVSDSNNHRVQIFDVN  228 (319)
Q Consensus       154 ~~g~~--~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~v~~~~~~~i~~~~~~  228 (319)
                      .+|+-  +.......  .|.++|++..      +++.++......+.....+. ++-+...+.+|+++.....|.++|.+
T Consensus        36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~------kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~  109 (369)
T 3s9j_A           36 ENGKEYLHFENTQKSLYDIVIFDIENQ------QIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQ  109 (369)
T ss_dssp             ETTEEEEEEEECSTTCCEEEEEETTTT------EEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTT
T ss_pred             cCCcEEEEEeCCCCCcCcEEEEECCCC------ceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCC
Confidence            44533  33455667  9999999854      55555443322233344453 46666778999998877899999999


Q ss_pred             CCEEEEeC
Q psy13998        229 GRVITSFG  236 (319)
Q Consensus       229 ~~~~~~~~  236 (319)
                      |+.+..+.
T Consensus       110 G~~~~k~~  117 (369)
T 3s9j_A          110 GEIIRNYN  117 (369)
T ss_dssp             CCEEEEEE
T ss_pred             ceEEEEEe
Confidence            99888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	1e-31
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	4e-07
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	7e-16
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	8e-14
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	7e-09
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	9e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	4e-15
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	1e-11
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	4e-14
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	1e-08
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	9e-05
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	1e-08
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	0.004
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	2e-07
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	5e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.004
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	0.004

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  117 bits (293), Expect = 1e-31
 Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 33/293 (11%)

Query: 36  LQKRRLQF--KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV 93
           ++++R+ +  K G  G   G FT P G+AV   N I+VAD++NHR+Q+    FD +    
Sbjct: 1   IKRQRMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----FDKEGRFK 56

Query: 94  FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK------FGSMGNKAGQLEHP 147
           F      +  +     + V    ++  + V +   T   +             A  L+HP
Sbjct: 57  FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHP 116

Query: 148 HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207
             + V N  R+IV +    RV IFD NG V                 +  LE P+ + V+
Sbjct: 117 RGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-----------KFGCSKHLEFPNGVVVN 165

Query: 208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN 267
           +   + +SD+  H V++F+  G+ +         EG   +P GV ++  G I + D+ NN
Sbjct: 166 DKQEIFISDNRAHCVKVFNYEGQYLRQI----GGEGITNYPIGVGINSNGEILIADNHNN 221

Query: 268 -RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
             + IFT DGQ + A         +      VA+M +G++++  + ++R+ ++
Sbjct: 222 FNLTIFTQDGQLISALE----SKVKHAQCFDVALMDDGSVVLASK-DYRLYIY 269

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 54  CFTWPRGIAVGPDNSIVVADSSN-HRVQVCFPHFD-LKTNCVFLAFTWPRGIAVGPDNSI 111
              +P G+ +  +  I++AD+ N   + +       +      +       +A+  D S+
Sbjct: 198 ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSV 257

Query: 112 VVADSSNHRVQVFQ 125
           V+A   ++R+ +++
Sbjct: 258 VLASK-DYRLYIYR 270

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.1 bits (180), Expect = 7e-16
 Identities = 45/248 (18%), Positives = 71/248 (28%), Gaps = 30/248 (12%)

Query: 58  PRGIAVGPDNSIVVADSSNH-RVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADS 116
           P G+AV    ++ V     + RV          T   F     P+G+AV    ++ V D 
Sbjct: 16  PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF 75

Query: 117 SNHRVQVFQSDGTFVGKFGSM-----------------GNKAGQLEHPHYIAVSNTNRVI 159
           +N  V +                                ++                 + 
Sbjct: 76  NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 135

Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE-------HPHYIAVSNTNRV 212
            +  N+      D +G V+ +D               Q+         P  IAV     V
Sbjct: 136 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTV 195

Query: 213 IVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
            V++ N ++V          T     G     L  P  VAVD    + V D GN+R+   
Sbjct: 196 YVTEHNTNQVVKLLAGSTTSTVLPFTG-----LNTPLAVAVDSDRTVYVADRGNDRVVKL 250

Query: 273 TPDGQFLR 280
           T       
Sbjct: 251 TSLEHHHH 258

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 68.0 bits (164), Expect = 8e-14
 Identities = 39/245 (15%), Positives = 70/245 (28%), Gaps = 35/245 (14%)

Query: 100 PRGIAVGPDNSIVVADSSNH-RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
           P G+AV    ++ V     + RV    +  T     G+       L  P  +AV     V
Sbjct: 16  PSGVAVDSAGNVYVTSEGMYGRVVKLATGST-----GTTVLPFNGLYQPQGLAVDGAGTV 70

Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 218
            V+D NN  V +   +          +     +        +      +   ++      
Sbjct: 71  YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT 130

Query: 219 NHRVQIFDVNGRVITSFGSEGS------------------------EEGQLKFPRGVAVD 254
              +    +N     +  + G+                            +  P G+AVD
Sbjct: 131 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD 190

Query: 255 DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
           + G + V +   N++                G           VAV S+  + V DR N 
Sbjct: 191 EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-----LNTPLAVAVDSDRTVYVADRGND 245

Query: 315 RIQVF 319
           R+   
Sbjct: 246 RVVKL 250

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.3 bits (126), Expect = 7e-09
 Identities = 21/78 (26%), Positives = 30/78 (38%)

Query: 54  CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
             T P GIAV    ++ V + + ++V          T   F     P  +AV  D ++ V
Sbjct: 180 DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 239

Query: 114 ADSSNHRVQVFQSDGTFV 131
           AD  N RV    S     
Sbjct: 240 ADRGNDRVVKLTSLEHHH 257

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-RVQIFDVNGRVITSFGSEGSEEGQ 244
           G+             P  +AV +   V V+    + RV             G+       
Sbjct: 1   GQTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGS-----TGTTVLPFNG 55

Query: 245 LKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCW 285
           L  P+G+AVD  G + V D  N  + +              
Sbjct: 56  LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG 96

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 72.4 bits (176), Expect = 4e-15
 Identities = 28/228 (12%), Positives = 62/228 (27%), Gaps = 10/228 (4%)

Query: 56  TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVAD 115
           T+   +A  PD +I V +     +    P  + + +          G+A   +  +V   
Sbjct: 28  TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGK--VSGLAFTSNGDLVATG 85

Query: 116 SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 175
            +   + V     +       +          + I   +  + + +DS    + + DV  
Sbjct: 86  WNADSIPVVSLVKSDGTVETLLTLPDA--IFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 143

Query: 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSF 235
                         +  N        + +     N + VS++    +    V+       
Sbjct: 144 PS--GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGE 200

Query: 236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFG 283
                E+         A D +G +       N +    PD        
Sbjct: 201 PEIFVEQT---NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ 245

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 62.0 bits (149), Expect = 1e-11
 Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 25/231 (10%)

Query: 94  FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 153
           F   T+   +A  PD +I V +     +     DG         G  +G       +A +
Sbjct: 24  FPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSG-------LAFT 76

Query: 154 NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 213
           +   ++ +  N   + +  +       +           N          I   +  + +
Sbjct: 77  SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN---------GITPLSDTQYL 127

Query: 214 VSDSNNHRVQIFDVNGRV-----ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNR 268
            +DS    + + DV              +  + E       G+      ++ V ++    
Sbjct: 128 TADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKML 186

Query: 269 IQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
           +     D                   ++  A    GN+       + +   
Sbjct: 187 LLRIPVDSTDKPGEPEIFVEQT---NIDDFAFDVEGNLYGATHIYNSVVRI 234

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 69.7 bits (169), Expect = 4e-14
 Identities = 27/261 (10%), Positives = 60/261 (22%), Gaps = 10/261 (3%)

Query: 52  PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
                   G+       + + D     +    P               P  I +  D  +
Sbjct: 36  SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL 95

Query: 112 VVADSSNHRVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI 170
            V    + +        T  G     +            +   +      +D   +    
Sbjct: 96  FVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 155

Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 230
                 V     T      ++    G               + V+++  +R+    +   
Sbjct: 156 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDE------KVLWVTETTANRLHRIALEDD 209

Query: 231 VIT---SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS 287
            +T      +        + P    +D    + V   G  R+ +F   G  +      G 
Sbjct: 210 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGR 269

Query: 288 GDGEFKGLEGVAVMSNGNILV 308
            +G          +   N L+
Sbjct: 270 DEGHMLRSTHPQFIPGTNQLI 290

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 21/228 (9%), Positives = 50/228 (21%), Gaps = 15/228 (6%)

Query: 96  AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 155
                 G+       + + D     +     +   + +            +P  I +   
Sbjct: 38  KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-----VSHKANPAAIKIHKD 92

Query: 156 NRVIVSDSNNHR----VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
            R+ V    + +    +     NG   Q     +     + +     +   Y        
Sbjct: 93  GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 152

Query: 212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI 271
                   +    F     +I +                   +            +RI +
Sbjct: 153 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR------LHRIAL 206

Query: 272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
                                +G +   + S+ N+ V      R+ VF
Sbjct: 207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF 254

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 5/110 (4%)

Query: 210 NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI 269
             +  S  +N  V I   +     +         +     G+  D QG + + D     I
Sbjct: 4   PTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNI 63

Query: 270 QIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
               P+ + ++                 + +  +G + VC   + +    
Sbjct: 64  FKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFKSTGG 108

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 40/285 (14%), Positives = 82/285 (28%), Gaps = 26/285 (9%)

Query: 55  FTWPRGIAVGPDNSIVVADSSNHRVQVCFPH---FDLKTNCVFLAFT--------WPRGI 103
                G     +    +                  DLKT    +            P G 
Sbjct: 17  IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGC 76

Query: 104 AVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 163
               D + +        + V Q+DGTF            +++  +  A      + ++  
Sbjct: 77  QCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGR-RMQGCNDCAFDYEGNLWITAP 135

Query: 164 NNHRVQIFDVNGRVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDS 217
                          +          G M       + P+ IAV + N     ++IV+++
Sbjct: 136 AGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET 195

Query: 218 NNHRVQIFDVNGRVITSFGS--EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
              ++  +D+ G                      G+  D+   + V + G++ I++F PD
Sbjct: 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255

Query: 276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL-VCDRENHRIQVF 319
           G   +           F+    +        + V + EN+ +  F
Sbjct: 256 GGQPK-----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 51  EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPD-N 109
                    G+    DN+++VA+  +  ++V  P        +   F  P  +   P   
Sbjct: 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK 280

Query: 110 SIVVADSSNHRVQVFQSD 127
           +I V +  N+ V  F+  
Sbjct: 281 TIFVTEHENNAVWKFEWQ 298

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 30/207 (14%)

Query: 53  GCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
                P GIA+      I   DS   R++V       +          PRGI   P    
Sbjct: 76  QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGN 135

Query: 112 VV---ADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHR 167
           +     +  N +++    DGT                 P+ +     + ++   D+  HR
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLG-----LPNGLTFDAFSSQLCWVDAGTHR 190

Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227
            +  +            V            L++P  +       +  +D   + V   D+
Sbjct: 191 AECLNPAQ----PGRRKV---------LEGLQYPFAVTSYG-KNLYYTDWKTNSVIAMDL 236

Query: 228 -NGRVITSFGSEGSEEGQLKFPRGVAV 253
              + + +F              G+ +
Sbjct: 237 AISKEMDTFHPHKQTR-----LYGITI 258

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 40/220 (18%)

Query: 108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS-DSNNH 166
           D  +   D S   +                      L  P  IA+ +  R I   DS   
Sbjct: 47  DKVVYWTDISEPSIGRASLH-----GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101

Query: 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV---SDSNNHRVQ 223
           R+++  ++G   +                  L +P  I        +     + +N +++
Sbjct: 102 RIEVAKMDGTQRRVLFD------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE 149

Query: 224 IFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQFLRAF 282
              ++G        +      L  P G+  D     +   D+G +R +   P     R  
Sbjct: 150 TSHMDGTNRRILAQD-----NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204

Query: 283 GCWGSGDGEFKGLE---GVAVMSNGNILVCDRENHRIQVF 319
                     +GL+    V      N+   D + + +   
Sbjct: 205 ---------LEGLQYPFAVTSY-GKNLYYTDWKTNSVIAM 234

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 18/184 (9%), Positives = 54/184 (29%), Gaps = 13/184 (7%)

Query: 60  GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNS-IVV 113
           G A+   +  ++  +  + + V     D+ ++ V+ +        P    + PDN    V
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHV----VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56

Query: 114 ADSSNHRVQVFQSDGTFVGKFGSMG-NKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIF 171
            ++    +     D        ++           +  A+S +   V  + +   R+   
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
            V         +      +   +   +    Y+  +  +  +     +    +    G+ 
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYK-MDVKTGKY 175

Query: 232 ITSF 235
             + 
Sbjct: 176 TVAL 179

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 17/164 (10%), Positives = 44/164 (26%), Gaps = 10/164 (6%)

Query: 61  IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIV-VADSSNH 119
           +A    + +VV D+    V         K   +  A   P    V P   I     + + 
Sbjct: 5   LAPARPDKLVVIDTEKMAV--------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSE 56

Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
            +               +     +++     A+S   + +    +  R+++     +  +
Sbjct: 57  SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116

Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 223
               +  +  S             +A +     +     +  V 
Sbjct: 117 VA-LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM 159

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 29/220 (13%), Positives = 73/220 (33%), Gaps = 9/220 (4%)

Query: 54  CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
             +  + ++   D ++ + D    +  +     D  T             A   D ++ V
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

Query: 114 ADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 173
            DS    +          G         G  +  + +  +   + +VS S +  V+++++
Sbjct: 232 WDSETGFLVERLDSENESGT--------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

Query: 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVI 232
                +SD              G  +    +A +  +  I+S S +  V  +D  +G  +
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
                  +    +    G ++  +  +    SG+ + +I+
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 17/179 (9%)

Query: 57  WPRGIAVG-PDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVAD 115
             + IA G  D ++ V DS            D +             +    D   VV+ 
Sbjct: 216 DGKYIAAGSLDRAVRVWDSETGF---LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 116 SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY-------IAVSNTNRVIVSDSNNHRV 168
           S +  V+++              N                 +A +  +  I+S S +  V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227
             +D         G  +       N    +   +  ++     V  + S + + +I+  
Sbjct: 333 LFWDKK------SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 14/128 (10%), Positives = 42/128 (32%), Gaps = 15/128 (11%)

Query: 99  WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
               I   P+ +     S +   ++F           S  N    +     ++ S + R+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI---TSVSFSKSGRL 284

Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 218
           +++  ++    ++D             G      N+         + V++    + + S 
Sbjct: 285 LLAGYDDFNCNVWDA------LKADRAGVLAGHDNRV------SCLGVTDDGMAVATGSW 332

Query: 219 NHRVQIFD 226
           +  ++I++
Sbjct: 333 DSFLKIWN 340

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 26/236 (11%), Positives = 56/236 (23%), Gaps = 15/236 (6%)

Query: 58  PRGIAVGPD--NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIV 112
           P+      D  N   V      ++ +     D  +  +              +      +
Sbjct: 21  PKKQLNDLDLPNLFSVTLRDAGQIAL----VDGDSKKIVKVIDTGYAVHISRMSASGRYL 76

Query: 113 VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIF 171
           +    + R+ +         K   +                  +R  I       +  I 
Sbjct: 77  LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
           D      +   +  G          +      IA       IV+     +V + +     
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 196

Query: 232 ITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG 286
             +  S G+      F      D    Y     + +N++ +     + L A    G
Sbjct: 197 NLTVTSIGAA----PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 248

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 61  IAVGPDNSIVVADSSNHRVQVCFP-HFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNH 119
            +   D ++ V   +    +     H  +     +   +    I+    +    +     
Sbjct: 159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 218

Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLE-HPHYI---AVSNTNRVIVSDSNNHRVQIFDV-N 174
            +     D T      S G     L  H +++      +  + I+S +++  ++++D  N
Sbjct: 219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278

Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 226
            R  +   T       +            +    T   +V+ S +  V++++
Sbjct: 279 KRCMK---TLNAHEHFV----------TSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 20/197 (10%), Positives = 54/197 (27%), Gaps = 25/197 (12%)

Query: 58  PRGIAVGPDNSIVVADSSNH---RVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSI 111
             G+   P  + + +                 +++      A      PR +A+ P  + 
Sbjct: 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY 206

Query: 112 V-VADSSNHRVQVFQSDG--------------TFVGKFGSMGNKAGQLEHPHYIAVSNTN 156
           +     + +R+  +  D                  G           L      A++ + 
Sbjct: 207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG 266

Query: 157 R-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVI 213
           + +  S   N       + G   +  G+ + K   +        H + ++        + 
Sbjct: 267 KYMFASSRANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA 325

Query: 214 VSDSNNHRVQIFDVNGR 230
           ++D     ++I+     
Sbjct: 326 ITDDQEGWLEIYRWKDE 342

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.91
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.88
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.81
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.8
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.8
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.74
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.74
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.73
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.69
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.69
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.09
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.79
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.69
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.54
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.25
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.0
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.94
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.79
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.79
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.52
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	97.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.05
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.94
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.47
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.46
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.19
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.68
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.13
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	93.3
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.52
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.42
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.86
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.6
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.97
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	88.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.86
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.55

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-31  Score=210.28  Aligned_cols=262  Identities=12%  Similarity=0.158  Sum_probs=209.8

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC-------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFD   87 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~   87 (319)
                      ...|.+++|+|+++++++++ +..+.+|+...             +|...+.+++|+|+|+++++++.|+.|++    |+
T Consensus        51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i----wd  125 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI----WD  125 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE----EE
T ss_pred             CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc----cc
Confidence            57899999999999999987 66777775432             33456889999999999999999999999    77


Q ss_pred             cccce--eeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE
Q psy13998         88 LKTNC--VFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV  160 (319)
Q Consensus        88 ~~~~~--~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~  160 (319)
                      +....  ....    ...+..+++++++.++++++.++.|.+|+ .+++.....      ..+...+.++++++++..++
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~------~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------QGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccc
Confidence            65332  2222    23557889999999999999999999999 555555555      44556788999999999999


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS  240 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (319)
                      +++.++.+.+||++..      +.+..+       .+...+.+++++|+++++++++.++.+++|+.+.......     
T Consensus       200 ~~~~d~~v~i~d~~~~------~~~~~~-------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----  261 (337)
T d1gxra_         200 TGGLDNTVRSWDLREG------RQLQQH-------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-----  261 (337)
T ss_dssp             EEETTSEEEEEETTTT------EEEEEE-------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-----
T ss_pred             cccccccccccccccc------eeeccc-------ccccceEEEEEcccccccceeccccccccccccccccccc-----
Confidence            9999999999998743      333333       2334578899999999999999999999999765444444     


Q ss_pred             CcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        241 EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       241 ~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ..+...+.+++++|+|+++++++.|+.|++|+ .+++.+..+       .+...+.+++|+|+++++++++.|+.|++|
T Consensus       262 -~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         262 -HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------KESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             -cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence             34556789999999999999999999999999 567777766       355689999999999999999999999998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=4.7e-28  Score=187.09  Aligned_cols=251  Identities=34%  Similarity=0.629  Sum_probs=200.7

Q ss_pred             cceeeeecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----------ecCceeeEEcCC
Q psy13998         39 RRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----------FTWPRGIAVGPD  108 (319)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~  108 (319)
                      .....+|+.+|...|+|..|.+|+++++|++||++..+++|++    |+.+. .....          ...|.++++..+
T Consensus         6 ~~~~~~~G~~G~~~g~f~~P~gvavd~dg~i~VaD~~n~rI~v----~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~   80 (279)
T d1q7fa_           6 MIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----FDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRN   80 (279)
T ss_dssp             ECEEEEECCBSSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEE----ECTTS-CEEEEECCBSSSTTCBSSEEEEEEETT
T ss_pred             EEEEeecCCCcCCCCeECCccEEEEcCCCCEEEEECCCCEEEE----EeCCC-CEEEEecccCCCccccccccccccccc
Confidence            3456789999999999999999999999999999999999999    77642 22221          225677887655


Q ss_pred             -CcEEE-EcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceee
Q psy13998        109 -NSIVV-ADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       109 -g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                       +..++ ....++.|..++.+|+....+.     ......|.+++++++|++|++....+.+.+++.++       +++.
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~g~~~~~~~-----~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-------~~~~  148 (279)
T d1q7fa_          81 SGDIIVTERSPTHQIQIYNQYGQFVRKFG-----ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-------NVLH  148 (279)
T ss_dssp             TTEEEEEECGGGCEEEEECTTSCEEEEEC-----TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-------CEEE
T ss_pred             ccccceeccCCccccccccccccceeecC-----CCcccccceeccccCCcEEEEeeccceeeEeccCC-------ceee
Confidence             34444 4556678999999999888774     23456789999999999999999999999988776       4444


Q ss_pred             eecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-
Q psy13998        187 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-  265 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-  265 (319)
                      .+..    ..+...|.++++++++++|+++...+.|++|+.+|+.+..+..    .+.+..|.+|+++++|++|+++.. 
T Consensus       149 ~~g~----~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~----~g~~~~P~giavD~~G~i~Vad~~~  220 (279)
T d1q7fa_         149 KFGC----SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG----EGITNYPIGVGINSNGEILIADNHN  220 (279)
T ss_dssp             EEEC----TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             cccc----cccccccceeeeccceeEEeeeccccceeeeecCCceeeeecc----cccccCCcccccccCCeEEEEECCC
Confidence            4432    3456788999999999999999999999999999999888853    345678999999999999999875 


Q ss_pred             CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++|.+|+++|+.+..+..    ......|++|++++||++|+++ .+++|++|
T Consensus       221 ~~~v~~f~~~G~~~~~~~~----~~~~~~p~~vav~~dG~l~V~~-~n~~v~~f  269 (279)
T d1q7fa_         221 NFNLTIFTQDGQLISALES----KVKHAQCFDVALMDDGSVVLAS-KDYRLYIY  269 (279)
T ss_dssp             SCEEEEECTTSCEEEEEEE----SSCCSCEEEEEEETTTEEEEEE-TTTEEEEE
T ss_pred             CcEEEEECCCCCEEEEEeC----CCCCCCEeEEEEeCCCcEEEEe-CCCeEEEE
Confidence            4589999999999888753    2334579999999999999887 57889986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.1e-28  Score=196.76  Aligned_cols=275  Identities=14%  Similarity=0.220  Sum_probs=202.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------------------------cCCCCcceEEcCCCcEEEEeC
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------------------------CFTWPRGIAVGPDNSIVVADS   74 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------------~~~~~~~v~~~~~g~~~~~~~   74 (319)
                      .+.|.+++|+|++.+++++. +..+.+|+...+                          +...+.+|+|+|+|+++++++
T Consensus        62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            46799999999999999886 667777755432                          234578999999999999999


Q ss_pred             CCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCcee
Q psy13998         75 SNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHY  149 (319)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  149 (319)
                      .|+.|++    |+..+.......    ..+.++.+++++..+++++.++.+++|+.... ......       .......
T Consensus       141 ~dg~v~i----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~~  209 (388)
T d1erja_         141 EDRLIRI----WDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------IEDGVTT  209 (388)
T ss_dssp             TTSCEEE----EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CSSCEEE
T ss_pred             ccccccc----ccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccc-------ccccccc
Confidence            9999999    888766655533    35678999999988888889999999995443 333331       1233455


Q ss_pred             EEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc-CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998        150 IAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV  227 (319)
Q Consensus       150 l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~  227 (319)
                      +.+.+ +++++++++.++.|.+|+....      .....+... .....+...+.+++++|+++++++++.++.|++||.
T Consensus       210 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  283 (388)
T d1erja_         210 VAVSPGDGKYIAAGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  283 (388)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTC------CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ccccCCCCCeEEEEcCCCeEEEeecccC------ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEec
Confidence            56655 7899999999999999998743      333322211 111345566789999999999999999999999996


Q ss_pred             CC-CEEEEeCCCC------CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEE
Q psy13998        228 NG-RVITSFGSEG------SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVA  299 (319)
Q Consensus       228 ~~-~~~~~~~~~~------~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~  299 (319)
                      .. ..........      ....+...+.+++++|+|+++++++.++.|++|| .+++.+..+      .+|...+.+++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l------~~H~~~V~~~~  357 (388)
T d1erja_         284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML------QGHRNSVISVA  357 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEE
T ss_pred             cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE------eCCCCCEEEEE
Confidence            42 2211110000      0023345678999999999999999999999999 578888888      57777888876


Q ss_pred             E------ccCCcEEEEeCCCCeEEeC
Q psy13998        300 V------MSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       300 ~------~~~g~~~v~~~~~~~i~v~  319 (319)
                      +      +|++.++++++.|+.|++|
T Consensus       358 ~~~~~~~spd~~~l~s~s~Dg~I~iW  383 (388)
T d1erja_         358 VANGSSLGPEYNVFATGSGDCKARIW  383 (388)
T ss_dssp             ECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             EecCcccCCCCCEEEEEeCCCEEEEE
Confidence            5      5789999999999999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.7e-28  Score=190.97  Aligned_cols=271  Identities=13%  Similarity=0.236  Sum_probs=208.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.+++|+|++.++++++.+..+.+|+...        +|...+.++++++++.++++...++.+..    ++.....
T Consensus        17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   92 (317)
T d1vyhc1          17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL----WDFQGFE   92 (317)
T ss_dssp             SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE----EETTSSC
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc----ccccccc
Confidence            67899999999999999999999888887554        35577899999999999999988888888    6665444


Q ss_pred             eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998         93 VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR  167 (319)
Q Consensus        93 ~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~  167 (319)
                      ...    +......+.++++++.+++.+.++.+.+|+ .+++....+      ..+...+..++++++++++++++.++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF------TGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE------ccCCCcceeeecccCCCEEEEEeCCCe
Confidence            433    233567889999999999999999999999 667777766      345567789999999999999999999


Q ss_pred             EEEEecCCceeeecCceeeeeccc------------CC--cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEE
Q psy13998        168 VQIFDVNGRVFQSDGTFVGKFGSM------------GN--KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVI  232 (319)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~  232 (319)
                      +++|+.....      ....+...            ..  ................+.++++++.++.|++|+. +++.+
T Consensus       167 v~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         167 VRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             EEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEeeccce------eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence            9999987532      22211100            00  0000111112223345677888889999999995 56667


Q ss_pred             EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                      ..+      .++...+.+++++|+++++++++.++.|++|| .+++.+..+      .+|...+++++|+|+++++++++
T Consensus       241 ~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         241 MTL------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL------NAHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEE------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE------ECCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEE------eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEe
Confidence            776      55666789999999999999999999999999 567888888      57788899999999999999999


Q ss_pred             CCCeEEeC
Q psy13998        312 ENHRIQVF  319 (319)
Q Consensus       312 ~~~~i~v~  319 (319)
                      .|+.|++|
T Consensus       309 ~Dg~i~iW  316 (317)
T d1vyhc1         309 VDQTVKVW  316 (317)
T ss_dssp             TTSEEEEE
T ss_pred             CCCeEEEe
Confidence            99999998

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=7.1e-28  Score=189.34  Aligned_cols=269  Identities=14%  Similarity=0.166  Sum_probs=193.9

Q ss_pred             cccccCCCccchhccccce--eeeecccC-----CCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE
Q psy13998         23 GIGQVGTTPRSQYLQKRRL--QFKIGSRG-----SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL   95 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~--~~~~~~~~-----~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~   95 (319)
                      ....++++|++..++....  ...+....     ...+|...+.+++|+|+|+++++++.|++|++    |+..+.....
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~i----wd~~~~~~~~   94 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI----WDTTQTTHIL   94 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EESSSTTCCE
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEee----eeeecccccc
Confidence            3456778888887665421  12222211     11467789999999999999999999999999    8876554321


Q ss_pred             ------EecCceeeEEcCCCcEEEEcCC--CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCC
Q psy13998         96 ------AFTWPRGIAVGPDNSIVVADSS--NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN  165 (319)
Q Consensus        96 ------~~~~~~~l~~~~~g~~~~~~~~--~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~  165 (319)
                            +-..+.+++|+++++++++++.  +..+.+|+ ..++....+      .+|...+.+++|+|++. ++++++.+
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l------~~h~~~v~~v~~~~~~~~~l~sgs~d  168 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL------TGQARAMNSVDFKPSRPFRIISGSDD  168 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC------CCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccc------cccccccccccccccceeeecccccc
Confidence                  2236689999999987777654  45588888 445544444      45667789999999886 47788899


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC-CCcc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG-SEEG  243 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~  243 (319)
                      +.|++||.++.      +.....      ..+...+.+++++|+++++++++.++.|++|+. ++.....+.... ...+
T Consensus       169 ~~i~i~d~~~~------~~~~~~------~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~  236 (311)
T d1nr0a1         169 NTVAIFEGPPF------KFKSTF------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA  236 (311)
T ss_dssp             SCEEEEETTTB------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred             ccccccccccc------cccccc------ccccccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence            99999998853      333333      334556789999999999999999999999995 556665553221 1234


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCC-CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFK-GLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~-~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |...+.+++|+|+++++++++.|+.|++|| .+++.++++.      .+.. ....+.+.+++..+++++.||.|++|
T Consensus       237 h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~------~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP------VGTRIEDQQLGIIWTKQALVSISANGFINFV  308 (311)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred             ccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE------CCCCccceEEEEEecCCEEEEEECCCEEEEE
Confidence            556788999999999999999999999999 5677777773      2221 12233455556667888899999998

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=6.2e-27  Score=186.09  Aligned_cols=243  Identities=12%  Similarity=0.228  Sum_probs=188.6

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      ..||...|.+|+|+|+++++++++.|++|++    |+..+......+    ..+.+++++|+++++++++.++.+..|+.
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~i----Wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLII----WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEE----EETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceee----eecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            4589999999999999999999999999999    988877766544    35789999999999999999999999972


Q ss_pred             CC-----cEEEEecCCC-----------------------------------ccCCCCCCceeEEEeCCCeEEEEeCCCC
Q psy13998        127 DG-----TFVGKFGSMG-----------------------------------NKAGQLEHPHYIAVSNTNRVIVSDSNNH  166 (319)
Q Consensus       127 ~~-----~~~~~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~  166 (319)
                      ..     .....+....                                   ........+....+.+.+.+++++..++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence            21     1111111000                                   0001112334556667788899999999


Q ss_pred             EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccc
Q psy13998        167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQL  245 (319)
Q Consensus       167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~  245 (319)
                      .|.+||++..      +.+..+      ..+...+.+++++|+++++++++.++.|++|+... .....+..    ..+.
T Consensus       207 ~v~i~d~~~~------~~~~~~------~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~----~~~~  270 (340)
T d1tbga_         207 SAKLWDVREG------MCRQTF------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH----DNII  270 (340)
T ss_dssp             EEEEEETTTT------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----TTCC
T ss_pred             eEEEEECCCC------cEEEEE------eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc----cccc
Confidence            9999998743      444444      34556788999999999999999999999999754 44444421    2233


Q ss_pred             cCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        246 KFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..+..++++|+++++++++.++.|++|| .+++.+..+      .+|...+++++|+|++.++++++.|+.|++|
T Consensus       271 ~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~------~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            4578899999999999999999999999 578888888      6788899999999999999999999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-27  Score=185.80  Aligned_cols=231  Identities=11%  Similarity=0.158  Sum_probs=181.3

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee---E------EecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF---L------AFTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~---~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      +|...|.+|+|+|+|+++++++ ++.|++    |++.+....   .      +-..+.+++|+|+++++++++.++.|++
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~i----Wd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKV----WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEE----EETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEE----EEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            4668899999999999999987 789999    776543221   1      1224689999999999999999999999


Q ss_pred             EcCCC---cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        124 FQSDG---TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       124 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      ||...   +....+      ..+...+..+++++++.++++++.++.+.+|++.+.      +.....      ..+...
T Consensus       124 wd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~------~~~~~~------~~~~~~  185 (337)
T d1gxra_         124 WDLAAPTPRIKAEL------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQF------QGHTDG  185 (337)
T ss_dssp             EECCCC--EEEEEE------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEE------CCCSSC
T ss_pred             cccccccccccccc------cccccccccccccccccccccccccccccccccccc------cccccc------cccccc
Confidence            99432   233333      344566788999999999999999999999998753      333332      334556


Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceE
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL  279 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~  279 (319)
                      +.++++++++..+++++.++.+++||. +++.+..+       .+...+.+++++|+++++++++.++.|++|+......
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             cccccccccccccccccccccccccccccceeeccc-------ccccceEEEEEcccccccceecccccccccccccccc
Confidence            788999999999999999999999996 55555554       2344678999999999999999999999999644333


Q ss_pred             EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...      ..+...+.+++|+|+|+++++++.|+.|++|
T Consensus       259 ~~~------~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iw  292 (337)
T d1gxra_         259 YQL------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             EEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccc------cccccccceEEECCCCCEEEEEeCCCeEEEE
Confidence            333      3567789999999999999999999999998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=8.1e-27  Score=188.05  Aligned_cols=236  Identities=12%  Similarity=0.105  Sum_probs=177.3

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-  127 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-  127 (319)
                      .+.+.+++|+|+|+++++++.++.|++    |+..++.  ...    |...+.+++|+|+++++++++.|+.|++|+.+ 
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~i----w~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHI----YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEE----EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEE----EECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            356899999999999999999999999    8876543  222    23467999999999999999999999999943 


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      +........    ..+...+.+++|+|+++.+++++.++.+.+|+.+...    ........    ...+...+.+++++
T Consensus        83 ~~~~~~~~~----~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~----~~~~~~~~----~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          83 RTWKPTLVI----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN----DWWVCKHI----KKPIRSTVLSLDWH  150 (371)
T ss_dssp             TEEEEEEEC----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT----TEEEEEEE----CTTCCSCEEEEEEC
T ss_pred             ccccccccc----ccccccccccccccccccceeecccCcceeeeeeccc----cccccccc----cccccccccccccc
Confidence            433333221    3455678999999999999999999999999875321    01111100    12344567889999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCCCC-------------------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCE
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVNGR-------------------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNR  268 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~  268 (319)
                      |+++++++++.++.|++|+....                   .....      ..+...+.+++|+|+|+++++++.|+.
T Consensus       151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~s~~~d~~  224 (371)
T d1k8kc_         151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES------SSSCGWVHGVCFSANGSRVAWVSHDST  224 (371)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC------CCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeec------cCccCcEEEEEeecccccccccccCCc
Confidence            99999999999999999995321                   11111      334556789999999999999999999


Q ss_pred             EEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        269 IQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       269 i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      |.+|| ..++.+..+      ..+...+.+++|+||+++++++. |+.+++|
T Consensus       225 i~iwd~~~~~~~~~~------~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         225 VCLADADKKMAVATL------ASETLPLLAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             EEEEEGGGTTEEEEE------ECSSCCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred             ceEEeeecccceeee------ecccccceeeeecCCCCEEEEEc-CCceEEE
Confidence            99999 467777777      56677899999999999888776 5555443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.6e-26  Score=184.25  Aligned_cols=282  Identities=11%  Similarity=0.073  Sum_probs=198.6

Q ss_pred             hhcccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccc
Q psy13998         19 LLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        19 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      +....|.+++|+|++.+++++..+..+.+|+..          .+|...|.+|+|+|+++++++++.|+.|++    |++
T Consensus         5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~v----Wd~   80 (371)
T d1k8kc_           5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV----WTL   80 (371)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE----EEE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEE----Eee
Confidence            445679999999999999988777766666542          356678999999999999999999999999    887


Q ss_pred             ccceeeE------EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEE
Q psy13998         89 KTNCVFL------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS  161 (319)
Q Consensus        89 ~~~~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~  161 (319)
                      .+.....      +...+.+++|+|+++.+++++.++.+.+|+. ...........  ...+...+.+++++|+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI--KKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE--CTTCCSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc--ccccccccccccccccccceec
Confidence            6544322      1235789999999999999999999999972 22211111100  0344567889999999999999


Q ss_pred             eCCCCEEEEEecCCceeeec------------CceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-C
Q psy13998        162 DSNNHRVQIFDVNGRVFQSD------------GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-N  228 (319)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~  228 (319)
                      ++.|+.+++|+.........            +..+..      ...+...+.+++++|+++++++++.++.|++||. .
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE------SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE------CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeee------ccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            99999999999864321100            011111      1334556788999999999999999999999995 5


Q ss_pred             CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE--EcCCCceEEeecc----------------------
Q psy13998        229 GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI--FTPDGQFLRAFGC----------------------  284 (319)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~--~~~~g~~~~~~~~----------------------  284 (319)
                      +..+..+      ..+...+.+++|+|++++++++. |+.+.+  |+.....+.....                      
T Consensus       233 ~~~~~~~------~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (371)
T d1k8kc_         233 KMAVATL------ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  305 (371)
T ss_dssp             TTEEEEE------ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             ccceeee------ecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEeccc
Confidence            6666666      44555678999999998888776 454444  4432222111100                      


Q ss_pred             ------------cCCCCCCCCCcceEEEccCC----cEEEEeCCCCeEEeC
Q psy13998        285 ------------WGSGDGEFKGLEGVAVMSNG----NILVCDRENHRIQVF  319 (319)
Q Consensus       285 ------------~~~~~~~~~~~~~l~~~~~g----~~~v~~~~~~~i~v~  319 (319)
                                  ......|...++++++.+.+    ..+++++.|+.|++|
T Consensus       306 ~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW  356 (371)
T d1k8kc_         306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW  356 (371)
T ss_dssp             CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred             ceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEE
Confidence                        00011255678888887643    368999999999998

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.6e-25  Score=175.87  Aligned_cols=235  Identities=13%  Similarity=0.150  Sum_probs=179.1

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTF  130 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~  130 (319)
                      ..+..++++|+|+.++.+. ++.|.+    |+..+.....    |...+.+++|+|+|+++++++.++.|++|+. .++.
T Consensus        18 ~~~~~~a~~~~g~~l~~~~-~~~v~i----~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN-GTSVYT----VPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEE----EETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCEEEE----EECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence            4677899999999887764 567889    7776554443    3347799999999999999999999999993 3332


Q ss_pred             --EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC--CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        131 --VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN--NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       131 --~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                        ...+      ..+...+.+++|+++++++++++.  +..+.+|+.+..      +....+      ..+...+.++++
T Consensus        93 ~~~~~~------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~------~~~~~l------~~h~~~v~~v~~  154 (311)
T d1nr0a1          93 ILKTTI------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG------TSNGNL------TGQARAMNSVDF  154 (311)
T ss_dssp             CEEEEE------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC------CBCBCC------CCCSSCEEEEEE
T ss_pred             cccccc------ccccCccccccccccccccccccccccccccccccccc------cccccc------cccccccccccc
Confidence              2333      345567899999999988887764  455888988742      332222      345566789999


Q ss_pred             cCCCc-EEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeec
Q psy13998        207 SNTNR-VIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFG  283 (319)
Q Consensus       207 ~~~g~-~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~  283 (319)
                      +|++. ++++++.++.|++||.. ++....+      ..+...+.+++++|+++++++++.++.|.+|+ .+++.+..+.
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~------~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTF------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccceeeeccccccccccccccccccccccc------ccccccccccccCcccccccccccccccccccccccccccccc
Confidence            99886 57788889999999965 4555555      45566789999999999999999999999999 4566666554


Q ss_pred             ccC-CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        284 CWG-SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       284 ~~~-~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ... ...+|...+.+++|+|+++++++++.|+.|++|
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iw  265 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  265 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccccccccccccccccCCCCCEEEEEeCCCeEEEE
Confidence            321 223466789999999999999999999999998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=1.6e-25  Score=170.90  Aligned_cols=232  Identities=23%  Similarity=0.305  Sum_probs=176.8

Q ss_pred             CCCCcceEEcCCCcEEEEeCC-CCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-C
Q psy13998         55 FTWPRGIAVGPDNSIVVADSS-NHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-G  128 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~-~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~  128 (319)
                      ...|.+|+++++|++|+++.. .+.+..    ++..+.....    .+..|.+++++++|++|+++..++.+++++.. +
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVK----LATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEE----EC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEE----EcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            367999999999999998754 467777    5554333222    24578999999999999999888777766633 3


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      ..+  ..     ......|.++++++++++|++...+..+..++..+.       ......     ......|.++++++
T Consensus        89 ~~~--~~-----~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~-------~~~~~~-----~~~~~~p~~i~~~~  149 (260)
T d1rwia_          89 QTV--LP-----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-------TQTVLP-----FTGLNDPDGVAVDN  149 (260)
T ss_dssp             CEE--CC-----CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCS-------SCEECC-----CCSCCSCCEEEECT
T ss_pred             eee--ee-----eeeeeecccccccccceeEeeccccccccccccccc-------eeeeee-----ecccCCcceeeecC
Confidence            322  21     223467899999999999999988888888887653       111111     22346789999999


Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCC
Q psy13998        209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG  288 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~  288 (319)
                      +|++|+++..+++|.+++.++.....+.     ...+..|.+|+++++|++|+++..+++|..+++++.....+.     
T Consensus       150 ~g~~~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~-----  219 (260)
T d1rwia_         150 SGNVYVTDTDNNRVVKLEAESNNQVVLP-----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-----  219 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEEECC-----CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC-----
T ss_pred             CCCEeeeccccccccccccccceeeeee-----ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc-----
Confidence            9999999999999999998876665542     345678999999999999999999999999998876655542     


Q ss_pred             CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        289 DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ...+..|.+|+++++|++|+++..+++|+.+
T Consensus       220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             cCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            2446789999999999999999999998753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3e-26  Score=179.20  Aligned_cols=265  Identities=14%  Similarity=0.136  Sum_probs=187.7

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC---------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP---------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN   91 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~   91 (319)
                      ...|.+++|+|++.++++++.+..+..|+...         +|...+.+++|+|+|+++++ +.|+.+++    |+....
T Consensus        12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~-~~d~~v~~----~~~~~~   86 (299)
T d1nr0a2          12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV-SWDDHLKV----VPAGGS   86 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE-ETTTEEEE----ECSSSS
T ss_pred             CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc-cceeeEEE----eccCCc
Confidence            67899999999999999999888888876543         34567889999999987655 45889999    665322


Q ss_pred             ee-------eEEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC
Q psy13998         92 CV-------FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN  164 (319)
Q Consensus        92 ~~-------~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~  164 (319)
                      ..       ......+.++++++++++++++. ++.+.+|+.. +.....        ....+..++++|+++++++++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~-~~~~~~--------~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG-KLTEVP--------ISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             SSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT-EEEEEE--------CSSCEEEEEECTTSCEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccc-cccccc--------cccccccccccccccccccccc
Confidence            11       11233678899999998776654 4689999843 222221        1134578999999999999999


Q ss_pred             CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcc
Q psy13998        165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEG  243 (319)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~  243 (319)
                      ++.+.+||+++...      .....     ..+...+.+++++|++.++++++.++.|++|+.. +........   ...
T Consensus       157 dg~i~~~d~~~~~~------~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---~~~  222 (299)
T d1nr0a2         157 DSKVHVYKLSGASV------SEVKT-----IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---WTF  222 (299)
T ss_dssp             TSEEEEEEEETTEE------EEEEE-----EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---CCC
T ss_pred             cccccccccccccc------ccccc-----cccccccccccccccccccccccccccccccccccccccccccc---ccc
Confidence            99999999875321      11110     2234567889999999999999999999999964 443322211   134


Q ss_pred             cccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCC-CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGE-FKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +...+.+++++|++.++++++.|+.|++|+.. +........    ..+ ...+..++ .+++.++++++.|+.|++|
T Consensus       223 h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK----GAHAMSSVNSVI-WLNETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET----TSSTTSCEEEEE-EEETTEEEEEETTSCEEEE
T ss_pred             cccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe----cCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEE
Confidence            55678899999999999999999999999943 322111110    122 33445554 4567888999999999998

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-24  Score=174.08  Aligned_cols=243  Identities=14%  Similarity=0.211  Sum_probs=178.1

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----------------------cCceeeEEcCCCc
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----------------------TWPRGIAVGPDNS  110 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~g~  110 (319)
                      +|...|.+|+|+|+|+++++++ |+.|++    |+..+......+                      ..+.+++|+|+++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~i----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQV----YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEE----EETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEE----EEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            4678899999999999999986 889999    888765554422                      1357899999999


Q ss_pred             EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998        111 IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG  189 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  189 (319)
                      ++++++.++.|++|+ ..++.+...      .++...+..+++.+++..+++++.++.+.+|+.....      ..... 
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------~~~~~-  201 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMIL------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ------CSLTL-  201 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------EEEEE-
T ss_pred             cceeccccccccccccccccccccc------ccccccccccccccccccccccccceeeeeeeccccc------ccccc-
Confidence            999999999999999 566666665      4566788999999999999999999999999988542      22211 


Q ss_pred             ccCCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC-CCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998        190 SMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG-SEEGQLKFPRGVAVDDQGYISVGDSGN  266 (319)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~~~v~~~~~  266 (319)
                            ........+.+. ++++++++++.++.|++|+. ++.....+.... ...++...+.+++++|+++++++++.+
T Consensus       202 ------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         202 ------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             ------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence                  111233445555 47789999999999999996 455555553221 113345678899999999999999999


Q ss_pred             CEEEEEcCC-CceEEeecccC------CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        267 NRIQIFTPD-GQFLRAFGCWG------SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       267 ~~i~~~~~~-g~~~~~~~~~~------~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.|++|+.. ++.........      ....+...+.+++++|+|+++++++.|+.|++|
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vw  335 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  335 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            999999943 22211110000      003456678999999999999999999999998

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=6.7e-25  Score=171.44  Aligned_cols=237  Identities=13%  Similarity=0.165  Sum_probs=174.5

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVFQS  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~  126 (319)
                      .||...|.+|+|+|+|+++++++.|++|++    |++.+......+     ..+.+++++|++++++++ .++.+++|+.
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~v----Wd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~-~d~~v~~~~~   83 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINS----WDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS-WDDHLKVVPA   83 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEE----EETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE-TTTEEEEECS
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEE----EECCCCcEEEEEcCCCCCcEEEEEeeccceeeccc-ceeeEEEecc
Confidence            589999999999999999999999999999    888776655533     356889999999876654 5789999995


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      .+........  ....+...+..+++++++++++++. ++.+.+|+...        .....        ....+.++++
T Consensus        84 ~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--------~~~~~--------~~~~~~~~~~  144 (299)
T d1nr0a2          84 GGSGVDSSKA--VANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--------LTEVP--------ISYNSSCVAL  144 (299)
T ss_dssp             SSSSSCTTSC--CEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--------EEEEE--------CSSCEEEEEE
T ss_pred             CCcccccccc--ccccccccccccccccccccccccc-ccccccccccc--------ccccc--------cccccccccc
Confidence            4432111110  0122335678899999998777654 56889998542        11111        1134567899


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeeccc
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCW  285 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~  285 (319)
                      +|+++++++++.++.|.+||.++........    ..+...+.+++++|++.++++++.++.|++|+. ++..+....  
T Consensus       145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~--  218 (299)
T d1nr0a2         145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT----IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN--  218 (299)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEE----EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC--
T ss_pred             ccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccc--
Confidence            9999999999999999999976544332211    234456889999999999999999999999994 444433321  


Q ss_pred             CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        286 GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                       ....|...+.+++|+|+++++++++.|+.|++|
T Consensus       219 -~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         219 -SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             -CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -cccccccccccccccccccceEEEcCCCEEEEE
Confidence             114567789999999999999999999999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.2e-24  Score=167.51  Aligned_cols=234  Identities=16%  Similarity=0.262  Sum_probs=183.4

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      .||...|.+|+|+|+++++++++.|++|++    |+..+......+    ..+.++++++++.++++...++.+..++ .
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~i----Wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKV----WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEE----EETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEE----EECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            578899999999999999999999999999    888776665544    3578899999999998888888888888 4


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      ..+....+      ..+......+.++++++.+++.+.++.+.+|++...      +.+..+      ..+......+++
T Consensus        90 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~------~~~~~~~~~~~~  151 (317)
T d1vyhc1          90 GFECIRTM------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTF------TGHREWVRMVRP  151 (317)
T ss_dssp             SSCEEECC------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEE------ECCSSCEEEEEE
T ss_pred             cccccccc------ccccccceeeeccCCCceEEeeccCcceeEeecccc------eeeeEE------ccCCCcceeeec
Confidence            44444433      345567788999999999999999999999998743      333333      234456788999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEc--------------------CCCcEEEEeCC
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD--------------------DQGYISVGDSG  265 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------~~g~~~v~~~~  265 (319)
                      ++++.++++++.++.|++|+. .+.....+.      .+...+..++++                    ..+.++++++.
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECKAELR------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceeeEEEe------cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            999999999999999999995 455555552      222223333333                    34567888999


Q ss_pred             CCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        266 NNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       266 ~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++.|++|+ .+++.+..+      .++...+.+++++|+++++++++.|+.|++|
T Consensus       226 d~~i~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  274 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLMTL------VGHDNWVRGVLFHSGGKFILSCADDKTLRVW  274 (317)
T ss_dssp             TSEEEEEETTTTEEEEEE------ECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred             CCEEEEEECCCCcEEEEE------eCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence            99999999 567777777      5677889999999999999999999999998

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.8e-25  Score=174.56  Aligned_cols=231  Identities=13%  Similarity=0.168  Sum_probs=180.5

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ...|.+++|+|++.++++++.+..+.+|+...+        |-..+.+++|+|+++++++++.++.+.+|+.........
T Consensus        55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  134 (340)
T d1tbga_          55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCC
T ss_pred             CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccc
Confidence            567999999999999999999999999876544        456789999999999999999999999943211111000


Q ss_pred             eeE---------------------------------------------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         93 VFL---------------------------------------------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        93 ~~~---------------------------------------------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      ...                                             .........+.+.+.+++++..++.|.+|| .
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~  214 (340)
T d1tbga_         135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR  214 (340)
T ss_dssp             EEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECC
Confidence            000                                             001224456667778889999999999999 6


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +++.+..+      .+|...+.+++++|+++++++++.++.|++|+....      .....+..    ..+...+..+++
T Consensus       215 ~~~~~~~~------~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~------~~~~~~~~----~~~~~~i~~~~~  278 (340)
T d1tbga_         215 EGMCRQTF------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSH----DNIICGITSVSF  278 (340)
T ss_dssp             TTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECC----TTCCSCEEEEEE
T ss_pred             CCcEEEEE------eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc------cccccccc----ccccCceEEEEE
Confidence            77777777      456677899999999999999999999999998753      22222211    223345688999


Q ss_pred             cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT  273 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~  273 (319)
                      +++++++++++.++.|++||. +++.+..+      .+|...+.+++|+|++.++++++.|+.|++||
T Consensus       279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~------~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         279 SKSGRLLLAGYDDFNCNVWDALKADRAGVL------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999995 67888887      66777889999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.1e-23  Score=164.79  Aligned_cols=268  Identities=9%  Similarity=0.086  Sum_probs=181.6

Q ss_pred             cccccCCCccchhcccccee-eeecccCC----------CCCcC-CCCcceEEcC--CCcEEEEeCCCCeEEEecccccc
Q psy13998         23 GIGQVGTTPRSQYLQKRRLQ-FKIGSRGS----------EPGCF-TWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        23 ~i~~~~~~~~~~~l~~~~~~-~~~~~~~~----------~~~~~-~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      ....++|+|.+..++.+... ..+..+..          ..+|. ..+.+++|+|  +|+++++++.|++|++    |+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~i----Wd~   94 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV----WGW   94 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE----EEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEE----eee
Confidence            45677888988887654321 12222211          12343 4688999997  5679999999999999    665


Q ss_pred             ccceeeE------------EecCceeeEEcCCCcEEEEc--CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998         89 KTNCVFL------------AFTWPRGIAVGPDNSIVVAD--SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS  153 (319)
Q Consensus        89 ~~~~~~~------------~~~~~~~l~~~~~g~~~~~~--~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (319)
                      .......            +...+.+++++++++.+++.  ..++.+.+|+ ..++.+..+      .+|...+.+++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~  168 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV------SGHSQRINACHLK  168 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC------CSCSSCEEEEEEC
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee------eeccccccccccc
Confidence            4322111            11245789999999866544  3466788888 567777776      4566788999999


Q ss_pred             CCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCCCeEEEEeC-CCC
Q psy13998        154 NTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDV-NGR  230 (319)
Q Consensus       154 ~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~-~~~  230 (319)
                      +++. ++++++.++.+.+|+....      +.......   ...+...+.+++++|+ +.++++++.++.|++||. +++
T Consensus       169 ~~~~~~~~~~~~d~~v~~~d~~~~------~~~~~~~~---~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         169 QSRPMRSMTVGDDGSVVFYQGPPF------KFSASDRT---HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTB------EEEEEECS---SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             ccccceEEEeeccccccccccccc------ccceeccc---ccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence            9875 4677888999999998643      22222211   1334556789999996 588898999999999995 677


Q ss_pred             EEEEeCCCCCCcccccCcceEEEc---CCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccC-Cc
Q psy13998        231 VITSFGSEGSEEGQLKFPRGVAVD---DQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSN-GN  305 (319)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~---~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~  305 (319)
                      .+..+      .++...+.++.++   ++|+++++++.|+.|++|| .+++.++.+..    ..+......+++.+. +.
T Consensus       240 ~~~~l------~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  309 (325)
T d1pgua1         240 FLKYI------EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL----DKQQLGNQQVGVVATGNG  309 (325)
T ss_dssp             EEEEC------CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC----CTTCGGGCEEEEEEEETT
T ss_pred             ccccc------cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe----cCCcccCeEEEEEECCCC
Confidence            77776      3344444444444   6788999999999999999 46777777632    122222334444433 24


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      ++++++.|+.|++|
T Consensus       310 ~l~s~s~dg~i~vw  323 (325)
T d1pgua1         310 RIISLSLDGTLNFY  323 (325)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             EEEEEECCCEEEEE
Confidence            78889999999998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=5.4e-22  Score=152.86  Aligned_cols=204  Identities=41%  Similarity=0.722  Sum_probs=165.7

Q ss_pred             EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEE-eCCCCEEEEEec
Q psy13998         96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVS-DSNNHRVQIFDV  173 (319)
Q Consensus        96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~-~~~~~~i~~~~~  173 (319)
                      ++..|.+|+++++|++|+++..+++|.+||++|+.+..+...+........|.++++..+ +..+++ ...++.|..++.
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             eECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            467899999999999999999999999999999999888766555556668888988764 455444 445678888877


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                      .+       .....+.     ......|.+++++++|++++++...+.+.+++.+++.+..+..    ..++..|..+++
T Consensus       101 ~g-------~~~~~~~-----~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~----~~~~~~~~~i~~  164 (279)
T d1q7fa_         101 YG-------QFVRKFG-----ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC----SKHLEFPNGVVV  164 (279)
T ss_dssp             TS-------CEEEEEC-----TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC----TTTCSSEEEEEE
T ss_pred             cc-------cceeecC-----CCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccc----cccccccceeee
Confidence            65       3333332     2345678999999999999999999999999999998887743    234667899999


Q ss_pred             cCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC-CeEEeC
Q psy13998        254 DDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN-HRIQVF  319 (319)
Q Consensus       254 ~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~-~~i~v~  319 (319)
                      +++|++|+++...++|++|+.+|+.+..++.    .+....|.+|+++++|++|+++..+ ++|.+|
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~----~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNYEGQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             ccceeEEeeeccccceeeeecCCceeeeecc----cccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence            9999999999999999999999999988854    4567789999999999999998754 467764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.91  E-value=1.5e-21  Score=152.35  Aligned_cols=237  Identities=19%  Similarity=0.278  Sum_probs=165.8

Q ss_pred             cCCCCcceEEcCCCcEEEEeCC-------CCeEEEeccccccccceeeE--------EecCceeeEEcCCCc-EEEEcCC
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSS-------NHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGPDNS-IVVADSS  117 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~g~-~~~~~~~  117 (319)
                      .+..+.+++++++|++|++...       +++|..    |+..+.....        ....|.+++++++++ +|+++. 
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r----~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-   90 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILR----IDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-   90 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEE----ECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEE----EECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-
Confidence            4677899999999999988654       467888    7776544322        112588999999986 555554 


Q ss_pred             CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC---------------CCEEEEEecCCceeeecC
Q psy13998        118 NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------------NHRVQIFDVNGRVFQSDG  182 (319)
Q Consensus       118 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~---------------~~~i~~~~~~~~~~~~~~  182 (319)
                      .+.|.+++.++.....+..... ......|++++++++|++|+++..               .+.|..++.++.      
T Consensus        91 ~~~i~~~~~~g~~~~~~~~~~~-g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~------  163 (314)
T d1pjxa_          91 RLGLLVVQTDGTFEEIAKKDSE-GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ------  163 (314)
T ss_dssp             TTEEEEEETTSCEEECCSBCTT-SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC------
T ss_pred             CCeEEEEeCCCcEEEEEecccc-ccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc------
Confidence            4679999988876554432211 112346899999999999999743               245666665543      


Q ss_pred             ceeeeecccCCcCCCCCCceeEEEcCCC-----cEEEEeCCCCeEEEEeC--CCCEEE--EeCCCCCCcccccCcceEEE
Q psy13998        183 TFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRVQIFDV--NGRVIT--SFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~v~~~~~~~i~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~i~~  253 (319)
                       ....       ......|+++++++++     .+|+++...++|+.|+.  ++....  .+...  .......|.+|++
T Consensus       164 -~~~~-------~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~--~~~~~~~pdGiav  233 (314)
T d1pjxa_         164 -MIQV-------DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDF  233 (314)
T ss_dssp             -EEEE-------EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEE
T ss_pred             -eeEe-------eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc--cccccccceeeEE
Confidence             2111       1224568999998865     48999999999999984  333221  11100  0112335889999


Q ss_pred             cCCCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEe
Q psy13998        254 DDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQV  318 (319)
Q Consensus       254 ~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v  318 (319)
                      +++|++|++....++|.+|++++ +.+..+      ......|++++|.+|++ +||+++.+++|..
T Consensus       234 D~~GnlyVa~~~~g~I~~~dp~~g~~~~~i------~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRI------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSCSEEE------ECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ecCCcEEEEEcCCCEEEEEeCCCCEEEEEE------ECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            99999999999999999999874 445555      23446799999999986 9999999998764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.5e-21  Score=150.03  Aligned_cols=255  Identities=13%  Similarity=0.140  Sum_probs=181.0

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC---CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP---GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF   97 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   97 (319)
                      ...|.+++++|    |.+++.+.++..|+...   +|...+.++++++++ .+++++.|+++++    |+.....   ..
T Consensus        13 ~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~----w~~~~~~---~~   80 (287)
T d1pgua2          13 NKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV----NGITKHE---FG   80 (287)
T ss_dssp             SSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEE----TTEEEEE---CS
T ss_pred             CCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCC-eEEEEeecccccc----ccccccc---cc
Confidence            67888999987    88899999998887653   455678889988654 5688888999999    8774321   12


Q ss_pred             cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEE-eCCCCEEEEEecCC
Q psy13998         98 TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS-DSNNHRVQIFDVNG  175 (319)
Q Consensus        98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~i~~~~~~~  175 (319)
                      ..|..+++.+++.++++... +.+.+|+ .+++.+..+...         ....++.+++..++. ...++.+++|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~  150 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTND-DDLLILQSFTGDIIKSVRLN---------SPGSAVSLSQNYVAVGLEEGNTIQVFKLSD  150 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETT-SEEEEEETTTCCEEEEEECS---------SCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred             cceeeeeeccCCceEEEeec-ccceeeeccceeeeeecccc---------ceeeeeeccCcceeeeccccceeeeeeccc
Confidence            35778888888877776654 4677777 667776665321         134566666655554 44556799999864


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                      .      +......     ..+...+.+++++|++.++++++.++.|++||...........    ..|...+.+++++|
T Consensus       151 ~------~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~~h~~~v~~~~~~p  215 (287)
T d1pgua2         151 L------EVSFDLK-----TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW----AFRTSKINAISWKP  215 (287)
T ss_dssp             E------EEEEECS-----SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS----CCCSSCEEEEEECC
T ss_pred             c------ceeeeee-----eccCCceeEEEeccCccccccccccccccceeecccccccccc----cccccccceeeecc
Confidence            2      1111111     2233457889999999999999999999999975443322111    34455677888876


Q ss_pred             C----------CcEEEEeCCCCEEEEEcC-C-CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        256 Q----------GYISVGDSGNNRIQIFTP-D-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 ~----------g~~~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .          +.++++++.|+.|++|+. . ++.+..+      .+|...+++++|++++. +++++.|+.|++|
T Consensus       216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~------~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW  284 (287)
T d1pgua2         216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL------NAHKDGVNNLLWETPST-LVSSGADACIKRW  284 (287)
T ss_dssp             CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET------TSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             cccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe------CCCCCCeEEEEECCCCE-EEEEECCCeEEEE
Confidence            3          468999999999999994 3 4555555      57888899999999865 7778889999998

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=8.8e-22  Score=156.69  Aligned_cols=275  Identities=13%  Similarity=0.146  Sum_probs=190.5

Q ss_pred             hhhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCCCcC----------CCCcceEEcCCCcEEEE
Q psy13998          5 SEAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF----------TWPRGIAVGPDNSIVVA   72 (319)
Q Consensus         5 ~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~g~~~~~   72 (319)
                      .+.+|..+++++..+.  ...|.+++|+|+ .++.+++.+..+..|.......          .......+.++++.+++
T Consensus        35 i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d1nexb2          35 IRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT  113 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeee
Confidence            4577888888888776  678999999885 4677777777777765443321          12234556778889999


Q ss_pred             eCCCCeEEEeccccccccceeeEEec------------------------Cc-eeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998         73 DSSNHRVQVCFPHFDLKTNCVFLAFT------------------------WP-RGIAVGPDNSIVVADSSNHRVQVFQ-S  126 (319)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~------------------------~~-~~l~~~~~g~~~~~~~~~~~i~~~~-~  126 (319)
                      ++.++.|++    |+..+........                        .. .-....+++++++.+..++.|.+|+ .
T Consensus       114 ~~~d~~i~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~  189 (355)
T d1nexb2         114 GSRDNTLHV----WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA  189 (355)
T ss_dssp             EETTSEEEE----EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             ecCCCcEEE----EEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecc
Confidence            999999999    7775543322100                        00 1123445678888888899999999 5


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +++.+...      ..+......+.+++++..+++++.++.|++|+....      ..+..+      ..+...+.++++
T Consensus       190 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~------~~h~~~v~~~~~  251 (355)
T d1nexb2         190 QMKCLYIL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTL------QGHTALVGLLRL  251 (355)
T ss_dssp             TTEEEEEE------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC------CEEEEE------CCCSSCCCEEEE
T ss_pred             cccceeee------eccccccccccccccceeeecccccceEEeeecccc------cccccc------cccccccccccc
Confidence            66666555      344456788999999999999999999999998743      444444      334455677777


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceE-EEcCCCcEEEEeCCCCEEEEEc-CCCceEEeec
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGV-AVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFG  283 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~  283 (319)
                      +  ++++++++.++.|++||.+. ......        +...+..+ ++.+++++++++ .|+.|++|| .+|+.+....
T Consensus       252 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~  320 (355)
T d1nexb2         252 S--DKFLVSAAADGSIRGWDANDYSRKFSY--------HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANI  320 (355)
T ss_dssp             C--SSEEEEECTTSEEEEEETTTCCEEEEE--------ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCT
T ss_pred             c--cceeeeeecccccccccccccceeccc--------ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEe
Confidence            5  46889999999999999653 333322        22233333 456777877776 478999999 5677764321


Q ss_pred             ccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                           .+|...+.+++++|+ .++++++.||.+.+|
T Consensus       321 -----~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         321 -----LKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             -----TTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             -----cCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence                 456678999999986 678888899987765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=7.1e-21  Score=144.97  Aligned_cols=197  Identities=26%  Similarity=0.346  Sum_probs=156.7

Q ss_pred             cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      .+..|.+|+++++|++|+++..++.+++    ++..+.....   .+..|.++++++++++|+++..+..+..++..+..
T Consensus        55 ~~~~p~gvav~~~g~i~v~d~~~~~i~~----~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~  130 (260)
T d1rwia_          55 GLYQPQGLAVDGAGTVYVTDFNNRVVTL----AAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT  130 (260)
T ss_dssp             SCCSCCCEEECTTCCEEEEETTTEEEEE----CTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS
T ss_pred             CccCceEEEEcCCCCEEEeeeeeceeee----eeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccce
Confidence            3578999999999999999999888887    6554333332   34579999999999999999888899999977765


Q ss_pred             EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      .....     ......|.+++++++|++|++...+++|..++.++..       .....     ...+..|.+|+++++|
T Consensus       131 ~~~~~-----~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-------~~~~~-----~~~~~~p~gi~~d~~g  193 (260)
T d1rwia_         131 QTVLP-----FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-------QVVLP-----FTDITAPWGIAVDEAG  193 (260)
T ss_dssp             CEECC-----CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-------EEECC-----CSSCCSEEEEEECTTC
T ss_pred             eeeee-----ecccCCcceeeecCCCCEeeeccccccccccccccce-------eeeee-----ccccCCCccceeeeee
Confidence            54443     2335678999999999999999999999999987632       11111     2345679999999999


Q ss_pred             cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC
Q psy13998        211 RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       211 ~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      ++|+++..+++|+.+++++.....+.     ...+..|.+|+++++|++|+++..+++|+.++..+
T Consensus       194 ~l~vsd~~~~~i~~~~~~~~~~~~~~-----~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         194 TVYVTEHNTNQVVKLLAGSTTSTVLP-----FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CEEEEETTTTEEEEECTTCSCCEECC-----CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             eeeeeecCCCEEEEEeCCCCeEEEEc-----cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            99999999999999998876555442     23456899999999999999999999999998643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.7e-21  Score=153.36  Aligned_cols=261  Identities=14%  Similarity=0.102  Sum_probs=165.0

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee-------eEEecC---------ceeeEEcC-CCcEEE
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV-------FLAFTW---------PRGIAVGP-DNSIVV  113 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~---------~~~l~~~~-~g~~~~  113 (319)
                      .++|...+.+|+++  ++++++++.|++|++    |+..+...       ......         ...+..+. ++.+++
T Consensus        10 ~~~H~~~I~~v~~~--~~~l~S~S~D~~iri----Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_          10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKV----WDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             SSCSSSCEEEEEEC--SSEEEEEETTSEEEE----EESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             CCcccCccEEEEEe--CCEEEEEECCCeEEE----EECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            46888999999986  468999999999999    76543221       111111         11111111 123566


Q ss_pred             EcCCCCeEEEEcC-CC---cEEE--EecCCCccCCCCCCceeEEEeCC-----CeEEEEeCCCCEEEEEecCCceee---
Q psy13998        114 ADSSNHRVQVFQS-DG---TFVG--KFGSMGNKAGQLEHPHYIAVSNT-----NRVIVSDSNNHRVQIFDVNGRVFQ---  179 (319)
Q Consensus       114 ~~~~~~~i~~~~~-~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~i~~~~~~~~~~~---  179 (319)
                      +++.++.|.+|+. ..   ....  ...... ...+......+++.++     +.++++++.++.+.+|++......   
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLD-SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSC-TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceee-eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            7778999999972 11   1111  111110 0111223455666653     467888889999999987431100   


Q ss_pred             ec---CceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998        180 SD---GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDD  255 (319)
Q Consensus       180 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~  255 (319)
                      ..   ...............+...+.+++++|++ ++++++.|+.|++||. +++.+..+.......+|...+.+++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence            00   00000001111112333456789999987 7788999999999996 4666665543333345667889999999


Q ss_pred             CCcEEEEeCCCC---EEEEEc-CCCceEEeeccc-------CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        256 QGYISVGDSGNN---RIQIFT-PDGQFLRAFGCW-------GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       256 ~g~~~v~~~~~~---~i~~~~-~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|+++++++.|+   .|++|| ..|+.+..+...       ....+|...+++++|+|||+++++++.|+.|++|
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            999999998776   589999 467776665321       1223677889999999999999999999999998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=1.9e-20  Score=146.63  Aligned_cols=234  Identities=14%  Similarity=0.171  Sum_probs=164.1

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCCcEEEEcCC----CCeEEEEcCCC
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDNSIVVADSS----NHRVQVFQSDG  128 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~----~~~i~~~~~~~  128 (319)
                      ...+++|+++|++|+++...++|..    ++..+......    ...|.+++++++|++|++...    ...+...+..+
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~r----i~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFK----INPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEE----EECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3479999999999999999999999    77655433322    236899999999999998643    34677777555


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      ..+......   ......++.++++++|++|+++...      +.+..++.++.       .+...      ......|+
T Consensus       117 ~~~~~~~~~---~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-------~~~~~------~~~~~~pn  180 (319)
T d2dg1a1         117 DNLQDIIED---LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-------TVTPI------IQNISVAN  180 (319)
T ss_dssp             CSCEEEECS---SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-------CEEEE------EEEESSEE
T ss_pred             ceeeeeccC---CCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-------eeEEE------eeccceee
Confidence            443333211   1234568999999999999987542      34666666543       22211      12345689


Q ss_pred             eEEEcCCCc-EEEEeCCCCeEEEEeC--CCCEEEEeCC-CCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce
Q psy13998        203 YIAVSNTNR-VIVSDSNNHRVQIFDV--NGRVITSFGS-EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF  278 (319)
Q Consensus       203 ~~~~~~~g~-~~v~~~~~~~i~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~  278 (319)
                      +++++++++ +|+++...++|++|+.  ++........ ..........|.+|+++++|++|++....++|.+|+++|+.
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~  260 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP  260 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcE
Confidence            999999885 8899999999999985  3332221100 00001223358999999999999999999999999999999


Q ss_pred             EEeecccCCCCCCCCCcceEEEccCCc-EEEEe
Q psy13998        279 LRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCD  310 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~  310 (319)
                      +..+..+....++...+.++++.+++. ++++.
T Consensus       261 l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         261 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            998866544445566788999988776 55543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.8e-22  Score=159.65  Aligned_cols=277  Identities=10%  Similarity=0.029  Sum_probs=181.3

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC-----------CcCCCCcceEEcCC-CcEEEEeCCCCeEEEecccccc
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-----------GCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDL   88 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~   88 (319)
                      .+.|..++|+|++.+|++++.+.++.+|+...           +|...|.+++|+++ +.++++++.|+.|++    |+.
T Consensus        11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~----w~~   86 (342)
T d1yfqa_          11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK----VDL   86 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE----ECS
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee----eec
Confidence            67899999999999999999988888885321           35567899999886 558899999999999    777


Q ss_pred             ccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEcC-CC--cEEEEecCCCccCCCCCCceeEEEeCCCeEEE
Q psy13998         89 KTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQS-DG--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV  160 (319)
Q Consensus        89 ~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~  160 (319)
                      ..........     ........++...+++.+.++.+.+||. .+  ..........  ...........+.+.+..++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS--NNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS--SSSSSCCCEEEEEECSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccc--ccccceeeeeeeeccCCcee
Confidence            6554444222     1233444556678888888999999982 21  1111111110  11112334566677788889


Q ss_pred             EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCCCE--------
Q psy13998        161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRV--------  231 (319)
Q Consensus       161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~~~--------  231 (319)
                      +++.++.|++|++.......  .....       ............. .++..+++++.++.+.+|+.+...        
T Consensus       165 ~~~~d~~i~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLCEDDN--GTIEE-------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCC--CEEEE-------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             eecCCCcEEEEecccCcccc--eeeee-------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence            99999999999986431100  00000       1111223334444 456788888889999999854211        


Q ss_pred             -E-EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998        232 -I-TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       232 -~-~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v  308 (319)
                       . ...........+...+.+++|+|+++++++++.|+.|++||. +++.+..+.       .......++++++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~-------~~~~~~~~~~s~~~~~l~  308 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-------KFNEDSVVKIACSDNILC  308 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------CCSSSEEEEEEECSSEEE
T ss_pred             ceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec-------CCCCCEEEEEEeCCCEEE
Confidence             1 111111112334455678999999999999999999999995 566676662       233456788899999888


Q ss_pred             EeCCCCeEEeC
Q psy13998        309 CDRENHRIQVF  319 (319)
Q Consensus       309 ~~~~~~~i~v~  319 (319)
                      +++.|+.+++|
T Consensus       309 ~a~sdd~~~~~  319 (342)
T d1yfqa_         309 LATSDDTFKTN  319 (342)
T ss_dssp             EEEECTHHHHC
T ss_pred             EEEcCCcEEEe
Confidence            87777665544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.3e-19  Score=140.96  Aligned_cols=227  Identities=20%  Similarity=0.333  Sum_probs=165.8

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCc
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGT  129 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~  129 (319)
                      ..|.+++++|+|+ +|+++..+++|++    ||..+.+.+..+   ..|.++++++++. ++++...+..+.+|+ .+++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v----~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSI----IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEE----EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEE----EECCCCceeeeeeccccccccccccccccccccccccceeeecccccce
Confidence            4689999999998 4578888999999    999887776644   3678999999986 667777888999999 4555


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN  208 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (319)
                      ....+.       ....+..++++++++. +++...+..+.+|+....      .....+       .....|..+++++
T Consensus       108 ~~~~~~-------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~~~  167 (301)
T d1l0qa2         108 VAGTVK-------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK------AVINTV-------SVGRSPKGIAVTP  167 (301)
T ss_dssp             EEEEEE-------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEE-------ECCSSEEEEEECT
T ss_pred             eeeecc-------ccccceEEEeecCCCeeeeeeccccceeeeecccc------ceeeec-------ccCCCceEEEeec
Confidence            555553       2246688999998865 566777888999988753      333322       1234578899999


Q ss_pred             CCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcE-EEEe--CCCCEEEEEcC-CCceEEeec
Q psy13998        209 TNR-VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYI-SVGD--SGNNRIQIFTP-DGQFLRAFG  283 (319)
Q Consensus       209 ~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-~v~~--~~~~~i~~~~~-~g~~~~~~~  283 (319)
                      ++. ++++....+.+.+++.........      ......|.++++++++.. |++.  ..++.|.+||. +++.+..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~  241 (301)
T d1l0qa2         168 DGTKVYVANFDSMSISVIDTVTNSVIDT------VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP  241 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEE------EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             cccceeeecccccccccccccceeeeec------ccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc
Confidence            875 556666677888888765544433      122345788999999864 4443  34578999994 567766662


Q ss_pred             ccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                             ....|.+++|+|||+ +|++++.++.|++|
T Consensus       242 -------~~~~~~~va~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         242 -------VGPDPAGIAVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             -------CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             -------CCCCEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence                   234689999999998 67899999999987

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.4e-20  Score=146.19  Aligned_cols=239  Identities=11%  Similarity=0.148  Sum_probs=163.8

Q ss_pred             CCCcceEEcCCCcEEEEeCCCC-eEEEeccccccccc--eeeEEe-----cCceeeEEcC--CCcEEEEcCCCCeEEEEc
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNH-RVQVCFPHFDLKTN--CVFLAF-----TWPRGIAVGP--DNSIVVADSSNHRVQVFQ  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~-~v~~~~~~~~~~~~--~~~~~~-----~~~~~l~~~~--~g~~~~~~~~~~~i~~~~  125 (319)
                      ..+.+++++|+|+.++.++.+. .|+.    |+....  .....+     ..+.+++|+|  ++.++++++.|++|++|+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~----~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd   93 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRC----LDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   93 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEE----CCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEE----EeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEee
Confidence            4678999999999887765443 3556    543221  112222     2578899997  457888999999999998


Q ss_pred             C-CCcEEEEe--cCCCccCCCCCCceeEEEeCCCeEEEEeC--CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        126 S-DGTFVGKF--GSMGNKAGQLEHPHYIAVSNTNRVIVSDS--NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       126 ~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      . .++....+  ........+...+.+++++++++.+++.+  .++.+.+|+.+.      ++.+..+      ..+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~------~~h~~~  161 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS------GNSLGEV------SGHSQR  161 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT------CCEEEEC------CSCSSC
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc------cccceee------eecccc
Confidence            3 22111000  00000023445678999999998776543  456788888763      2444443      345566


Q ss_pred             ceeEEEcCCCc-EEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEc-CCC
Q psy13998        201 PHYIAVSNTNR-VIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFT-PDG  276 (319)
Q Consensus       201 ~~~~~~~~~g~-~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~-~~g  276 (319)
                      ..++++++++. ++++++.++.+++|+.. ++........   ..+...+.+++|+|+ +.++++++.|+.|++|| .++
T Consensus       162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~---~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH---HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS---SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             cccccccccccceEEEeecccccccccccccccceecccc---cCCCCccEEeeeccccceeccccccccceeeeeeccc
Confidence            78899999875 56778889999999964 4444444221   334556789999997 58899999999999999 578


Q ss_pred             ceEEeecccCCCCCCCCCcceEEEc---cCCcEEEEeCCCCeEEeC
Q psy13998        277 QFLRAFGCWGSGDGEFKGLEGVAVM---SNGNILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+..+      .++...+.++.++   +||+++++++.|+.|++|
T Consensus       239 ~~~~~l------~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw  278 (325)
T d1pgua1         239 EFLKYI------EDDQEPVQGGIFALSWLDSQKFATVGADATIRVW  278 (325)
T ss_dssp             CEEEEC------CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             cccccc------cccccccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence            888877      4555556666555   788999999999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-20  Score=148.97  Aligned_cols=264  Identities=12%  Similarity=0.179  Sum_probs=172.4

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      .+.|.. ++++++.++++++.+..+.+|+...        +|...+.++++++  +++++++.|+.+++    |+.....
T Consensus        16 ~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~----~~~~~~~   88 (342)
T d2ovrb2          16 DDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKV----WNAETGE   88 (342)
T ss_dssp             TTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEE----EETTTTE
T ss_pred             CCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecccccc----ccccccc
Confidence            455543 3677889999999998888887654        3557788999986  48899999999999    6654433


Q ss_pred             eeEEec------------------------------------------CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCc
Q psy13998         93 VFLAFT------------------------------------------WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGT  129 (319)
Q Consensus        93 ~~~~~~------------------------------------------~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~  129 (319)
                      ......                                          .............++.++.++.|++|+ ...+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  168 (342)
T d2ovrb2          89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET  168 (342)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred             ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccce
Confidence            322110                                          000011112233445555667777777 3444


Q ss_pred             EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998        130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT  209 (319)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (319)
                      .+..+      .++.  .....+.+++..+++++.++.|++||++..      +.+..+      ..+.....++++  +
T Consensus       169 ~~~~~------~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~------~~~~~~------~~~~~~v~~~~~--~  226 (342)
T d2ovrb2         169 CLHTL------QGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETG------NCIHTL------TGHQSLTSGMEL--K  226 (342)
T ss_dssp             EEEEE------CCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTC------CEEEEE------CCCCSCEEEEEE--E
T ss_pred             eeEEE------cCcc--cccccccCCCCEEEEEeCCCeEEEeecccc------eeeeEe------cccccceeEEec--C
Confidence            44444      2222  234455667889999999999999998743      444433      223334455555  4


Q ss_pred             CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCC
Q psy13998        210 NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGS  287 (319)
Q Consensus       210 g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~  287 (319)
                      ++++++++.++.|++|+.. .+....+...   ..+...+..+.+  +++++++++.|+.|++|| .+|+.++.+.... 
T Consensus       227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~-  300 (342)
T d2ovrb2         227 DNILVSGNADSTVKIWDIKTGQCLQTLQGP---NKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-  300 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECST---TSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECT-
T ss_pred             CCEEEEEcCCCEEEEEeccccccccccccc---ceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEeccc-
Confidence            5688999999999999964 4455554221   122333444444  557889999999999999 5788877763211 


Q ss_pred             CCCCCCCcceEEEccCCcEEEEeCCCCe----EEeC
Q psy13998        288 GDGEFKGLEGVAVMSNGNILVCDRENHR----IQVF  319 (319)
Q Consensus       288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~----i~v~  319 (319)
                      ..++...+++++++|++.++++++.||+    |++|
T Consensus       301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~  336 (342)
T d2ovrb2         301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL  336 (342)
T ss_dssp             TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEE
Confidence            1234567899999999999999998884    6665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.8e-20  Score=151.75  Aligned_cols=249  Identities=10%  Similarity=0.114  Sum_probs=159.9

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCCCcCCCC--------------cceE----EcC---CCcEEEEeCCCCeE
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWP--------------RGIA----VGP---DNSIVVADSSNHRV   79 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~v~----~~~---~g~~~~~~~~~~~v   79 (319)
                      ...|.++++++  .++.+++.+..+.+|+........|              ..+.    ...   ++.++++++.|+.|
T Consensus        14 ~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v   91 (393)
T d1sq9a_          14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   91 (393)
T ss_dssp             SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             cCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcE
Confidence            45566666554  5788888888888886432221111              1111    111   22466788889999


Q ss_pred             EEecccccccccee----eE-Ee---------cCceeeEEcCC-----CcEEEEcCCCCeEEEEcCC--C----------
Q psy13998         80 QVCFPHFDLKTNCV----FL-AF---------TWPRGIAVGPD-----NSIVVADSSNHRVQVFQSD--G----------  128 (319)
Q Consensus        80 ~~~~~~~~~~~~~~----~~-~~---------~~~~~l~~~~~-----g~~~~~~~~~~~i~~~~~~--~----------  128 (319)
                      ++    |+......    .. ..         .....+++.++     +..+++++.++.+.+|+..  .          
T Consensus        92 ~~----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          92 LF----YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             EE----EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             EE----EEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            99    65432211    11 11         12234555543     3577788889999999831  1          


Q ss_pred             -cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        129 -TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                       ..............+...+.+++++|++ ++++++.|+.|++||+...      +.+..+........|...+.+++|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~------~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL------RPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT------EEEEEEECCC---CCCCCEEEEEEC
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc------ccccccccccccccccceEEEcccc
Confidence             0111111111112333557889999987 6789999999999998743      4444443333335667788999999


Q ss_pred             CCCcEEEEeCCCC---eEEEEeC-CCCEEEEeCCCC-------CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CC
Q psy13998        208 NTNRVIVSDSNNH---RVQIFDV-NGRVITSFGSEG-------SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PD  275 (319)
Q Consensus       208 ~~g~~~v~~~~~~---~i~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~  275 (319)
                      |+|+++++++.|+   .|++||. .++.+..+....       ...+|...+.+++|+|+++++++++.|++|++|| .+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            9999999987665   5899996 566666653211       1235677889999999999999999999999999 57


Q ss_pred             CceEEee
Q psy13998        276 GQFLRAF  282 (319)
Q Consensus       276 g~~~~~~  282 (319)
                      |+.+.++
T Consensus       321 g~~~~~l  327 (393)
T d1sq9a_         321 KERITTL  327 (393)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            8888776

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.9e-19  Score=142.99  Aligned_cols=244  Identities=15%  Similarity=0.196  Sum_probs=165.7

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC-
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS-  126 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-  126 (319)
                      .||...+.. +++++|+++++++.|++|++    ||..+.+.+..+    ..+.+++++++ .++++++.|+.|++|+. 
T Consensus         9 ~GH~~~vit-c~~~~~~~l~tgs~Dg~i~v----Wd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           9 RGHMTSVIT-CLQFEDNYVITGADDKMIRV----YDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             ECCSSSCEE-EEEEETTEEEEEETTTEEEE----EETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             CCcCCCcEE-EEEECCCEEEEEeCCCeEEE----EECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            367777632 24456889999999999999    998877766644    36789999885 57788889999999994 


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCcee----eeecccCCcC-----CC
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV----GKFGSMGNKA-----GQ  197 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~  197 (319)
                      ..+........    ............+++..+++++.++.|++|++............    ..........     ..
T Consensus        83 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          83 KGCCTHVFEGH----NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             TTEEEEEECCC----SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccc----cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            44444433211    11122244556678889999999999999998753211100000    0000000000     00


Q ss_pred             CCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CC
Q psy13998        198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PD  275 (319)
Q Consensus       198 ~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~  275 (319)
                      ..........+++++++++..++.|++||. +++.+...      .........+.+++++.++++++.++.|++|+ .+
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeee------eccccccccccccccceeeecccccceEEeeeccc
Confidence            000111334567788889999999999996 45555555      34455677899999999999999999999999 56


Q ss_pred             CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +..+..+      .+|...+.+++++  ++++++++.|+.|++|
T Consensus       233 ~~~~~~~------~~h~~~v~~~~~~--~~~l~~~~~dg~i~iw  268 (355)
T d1nexb2         233 GELMYTL------QGHTALVGLLRLS--DKFLVSAAADGSIRGW  268 (355)
T ss_dssp             CCEEEEE------CCCSSCCCEEEEC--SSEEEEECTTSEEEEE
T ss_pred             ccccccc------ccccccccccccc--cceeeeeecccccccc
Confidence            7777777      5777788888886  4689999999999998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.86  E-value=3.4e-19  Score=138.66  Aligned_cols=237  Identities=14%  Similarity=0.071  Sum_probs=163.6

Q ss_pred             CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcC---CCcEE
Q psy13998         57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS---DGTFV  131 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~---~~~~~  131 (319)
                      ++.++++++||++|+++..+++|..    ++........  ....|.+++++++|++|++...++.+..++.   .+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~----i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVS----ITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEE----ECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEE----EeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            5789999999999999999999999    6654332221  2347899999999999999887887777762   33333


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                      .....     .....++++++++++++|++....+.+..++..+......  .................+.++.++. +.
T Consensus       105 ~~~~~-----~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ngi~~~~-~~  176 (302)
T d2p4oa1         105 TLLTL-----PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIW--LEHPMLARSNSESVFPAANGLKRFG-NF  176 (302)
T ss_dssp             EEEEC-----TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEE--EECGGGSCSSTTCCSCSEEEEEEET-TE
T ss_pred             ecccc-----CCccccceeEEccCCCEEeeccccccceeeeccCCcceeE--ecCCccceeeccCcccccccccccC-Cc
Confidence            32221     2235679999999999999999999999999876432110  0000001111123345677888764 57


Q ss_pred             EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCC
Q psy13998        212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE  291 (319)
Q Consensus       212 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~  291 (319)
                      +|++....+.|+.++.++........   .......|.+++++++|++|++...+++|.+++++|+.......    ...
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~----~~~  249 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKPGEPE---IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA----EQG  249 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCE---EEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG----GGT
T ss_pred             eeeecCCCCeEEeccccccccccccc---cccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec----CCC
Confidence            89999999999999865421110000   01223468999999999999999999999999999986554421    234


Q ss_pred             CCCcceEEE---ccCCc-EEEEeCC
Q psy13998        292 FKGLEGVAV---MSNGN-ILVCDRE  312 (319)
Q Consensus       292 ~~~~~~l~~---~~~g~-~~v~~~~  312 (319)
                      ...|++++|   .+|++ +|++...
T Consensus       250 ~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         250 VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCceEEEEcCCCCCCCEEEEECCC
Confidence            567999999   56766 7777654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.2e-19  Score=143.31  Aligned_cols=248  Identities=11%  Similarity=0.028  Sum_probs=159.9

Q ss_pred             CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee---eE----EecCceeeEEcCCC-cEEEEcCCCCeEE
Q psy13998         51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV---FL----AFTWPRGIAVGPDN-SIVVADSSNHRVQ  122 (319)
Q Consensus        51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~---~~----~~~~~~~l~~~~~g-~~~~~~~~~~~i~  122 (319)
                      ..+|-+.|.+|+|+|+++++++++.|++|++    |+..+...   ..    +-..+.+++|++++ .++++++.++.|.
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~i----wd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTV----YKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEE----EEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEE----EEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            4577789999999999999999999999999    77654322   11    23357899998764 5788888999999


Q ss_pred             EEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        123 VFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       123 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      +|+. .+........     .+..........+++..+++.+.++.+.+||++....  ..........    .......
T Consensus        83 ~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~--~~~~~~~~~~----~~~~~~~  151 (342)
T d1yfqa_          83 KVDLIGSPSFQALTN-----NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD--GVIAVKNLNS----NNTKVKN  151 (342)
T ss_dssp             EECSSSSSSEEECBS-----CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT--BCEEEEESCS----SSSSSCC
T ss_pred             eeecccccccccccc-----cccccccccccccccccccccccccccceeecccccc--ceeeeccccc----cccccee
Confidence            9994 3333333321     1112223444556778888889999999999753210  0011111100    1111223


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeCCC-CE---EEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEEcCCC
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDVNG-RV---ITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      ..+.+.+.+..+++++.++.|++|+... ..   ....      .............+ ++..+++++.++.+.+|+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             eeeeeeccCCceeeecCCCcEEEEecccCcccceeeee------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence            4456677778888888999999999642 11   1111      11122233444444 467888999999999998432


Q ss_pred             ce----------EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        277 QF----------LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       277 ~~----------~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ..          ............+...+++++|+|+++++++++.|+.|++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEE
Confidence            21          11111111223455668899999999999999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=6.8e-20  Score=146.22  Aligned_cols=260  Identities=9%  Similarity=0.044  Sum_probs=165.4

Q ss_pred             cCCCc-cchhccccceeeeecccCCC------CCcCCCCcceEEcCCCcEEEEeCCC--CeEEEeccccccccceeeE--
Q psy13998         27 VGTTP-RSQYLQKRRLQFKIGSRGSE------PGCFTWPRGIAVGPDNSIVVADSSN--HRVQVCFPHFDLKTNCVFL--   95 (319)
Q Consensus        27 ~~~~~-~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~g~~~~~~~~~--~~v~~~~~~~~~~~~~~~~--   95 (319)
                      -.||| ++.+++..+.. .+-.|+..      .+|...+.+++|+|||+.+++.+.+  ..|++    |+..++....  
T Consensus         8 ~~fSP~dG~~~a~~~~g-~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v----~d~~~~~~~~~~   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRG-QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGI----YDYRTGKAEKFE   82 (360)
T ss_dssp             EEEEECGGGCEEEEETT-EEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEE----EETTTCCEEECC
T ss_pred             ccccCCCCCEEEEEECC-eEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEE----EECCCCcEEEee
Confidence            34788 88887754322 22222222      2456788999999999977655433  47889    8887655443  


Q ss_pred             -EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEe----------C
Q psy13998         96 -AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD----------S  163 (319)
Q Consensus        96 -~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~----------~  163 (319)
                       +...+.+++|+|+|+.++++..++.+++|+. .++....+      ..+...+.+++++|+|++++..          .
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE------RSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeee------ecccccccchhhccceeeeeeeccccccceeec
Confidence             3346688999999999999999999999994 55555444      2344566789999999887643          2


Q ss_pred             CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC--------CEEEEe
Q psy13998        164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG--------RVITSF  235 (319)
Q Consensus       164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~--------~~~~~~  235 (319)
                      .++.+.+|+..+..      ... .      ..+......++++|+|+.++..+.++.+.+|+...        .....+
T Consensus       157 ~~~~~~v~d~~~~~------~~~-~------~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~  223 (360)
T d1k32a3         157 VMQAIHVYDMEGRK------IFA-A------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  223 (360)
T ss_dssp             CEEEEEEEETTTTE------EEE-C------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             cccceeeeccccCc------eee-e------cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEE
Confidence            34568889887532      111 1      12233456788999999888888788888887431        111111


Q ss_pred             CC--CCC------------------Ccc----------cccCcceEEEcCCCcEE-------------EEeCCCCEEEEE
Q psy13998        236 GS--EGS------------------EEG----------QLKFPRGVAVDDQGYIS-------------VGDSGNNRIQIF  272 (319)
Q Consensus       236 ~~--~~~------------------~~~----------~~~~~~~i~~~~~g~~~-------------v~~~~~~~i~~~  272 (319)
                      ..  ...                  ...          .......+...+++..+             +++..++.|++|
T Consensus       224 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  303 (360)
T d1k32a3         224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  303 (360)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             ecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEE
Confidence            00  000                  000          00011223333333222             233456789999


Q ss_pred             cCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        273 TPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       273 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +.+++.+..+         ...+.+++|+|||+.+++++.|+.|++|
T Consensus       304 d~~~~~~~~~---------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~  341 (360)
T d1k32a3         304 DVKTRKVTEV---------KNNLTDLRLSADRKTVMVRKDDGKIYTF  341 (360)
T ss_dssp             ETTTCCEEEE---------EEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             ECCCCeEEEe---------cCCcCEEEECCCCCEEEEEECCCeEEEE
Confidence            9765544443         2347899999999999999999999987

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.9e-17  Score=129.45  Aligned_cols=247  Identities=16%  Similarity=0.229  Sum_probs=155.3

Q ss_pred             CCCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeE----E---ecCceeeEEcCCCc-EEEEcCCCCeEEEEc
Q psy13998         55 FTWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFL----A---FTWPRGIAVGPDNS-IVVADSSNHRVQVFQ  125 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~----~---~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~  125 (319)
                      -..|.+|+|+|||+. |+++..++.|++    |++.......    +   ...|.+++++|+|+ ++++...+..+..|+
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~----~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLA----YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEE----EEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEE----EEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            367899999999995 577778999999    7765432211    1   23678899999997 555556678898888


Q ss_pred             CCCc-EEEEecCCCccCCCCCCceeEEEeCCCeEE-EEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        126 SDGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       126 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      .... .......    ..+...++++.++++++.+ +.......+.+|+.....     ...... ...........|..
T Consensus       112 ~~~~~~~~~~~~----~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~-~~~~~~~~g~~p~~  181 (333)
T d1ri6a_         112 LEDGLPVGVVDV----VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG-----HLVAQD-PAEVTTVEGAGPRH  181 (333)
T ss_dssp             EETTEEEEEEEE----ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS-----CEEEEE-EEEEECSTTCCEEE
T ss_pred             cccccceecccc----cCCCccceEEEeeecceeeeccccccceeeEEEeccCC-----cceeee-ceeeeeecCCCccE
Confidence            4332 2222211    2233567889999998654 455566789888875421     111100 00001223456788


Q ss_pred             EEEcCCCcE-EEEeCCCCeEEEEeCC--CC---EEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC--
Q psy13998        204 IAVSNTNRV-IVSDSNNHRVQIFDVN--GR---VITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP--  274 (319)
Q Consensus       204 ~~~~~~g~~-~v~~~~~~~i~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~--  274 (319)
                      +++++++.. +++....+...+++..  ..   .................+..++++++++ ++++....+.+.+|+.  
T Consensus       182 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         182 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  261 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence            999988754 4566666777777632  21   1122211122223345677889999986 6777788888988873  


Q ss_pred             CCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        275 DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       275 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ++........    ......|.+++|+|||+ +|+++..++.|++|
T Consensus       262 ~~~~~~~~~~----~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         262 DGSVLSKEGF----QPTETQPRGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             TSCCEEEEEE----EECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             CCCEEEEEEE----eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEE
Confidence            3433332211    12335689999999999 67777778899886

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.6e-18  Score=129.33  Aligned_cols=256  Identities=15%  Similarity=0.225  Sum_probs=167.2

Q ss_pred             cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998         21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC   92 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~   92 (319)
                      ..+|.++  ++++.++++++.+..+.+|+...        +|...+.+|++  +++++++++.|+.|++    |+.....
T Consensus        15 ~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~----~~~~~~~   86 (293)
T d1p22a2          15 SKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV----WDVNTGE   86 (293)
T ss_dssp             CCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE----EESSSCC
T ss_pred             CCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc----ccccccc
Confidence            3456555  45788999999998888887654        35566766665  6789999999999999    8876655


Q ss_pred             eeEEec--CceeeEEcCCCcEEEEcCCCCeEEEEcCCC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998         93 VFLAFT--WPRGIAVGPDNSIVVADSSNHRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  169 (319)
Q Consensus        93 ~~~~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~  169 (319)
                      ......  ........+....++++..++.+.+|+... .........   ..+...+..+.+  ....+++.+.++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~~~~~s~d~~i~  161 (293)
T d1p22a2          87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL---VGHRAAVNVVDF--DDKYIVSASGDRTIK  161 (293)
T ss_dssp             EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEE---CCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccceeecccccceeEeeccccccccccccc---ccccccccccee--cccccccccCCCcee
Confidence            544332  223333444555667777788899998332 211111100   223333344443  345667777899999


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~  248 (319)
                      +|+....      +.+..+.      .+......+.  +++..++++..++.|++||. ....+...      ..+...+
T Consensus       162 ~~d~~~~------~~~~~~~------~~~~~v~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v  221 (293)
T d1p22a2         162 VWNTSTC------EFVRTLN------GHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVL------EGHEELV  221 (293)
T ss_dssp             EEETTTC------CEEEEEE------CCSSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCE
T ss_pred             eecCCCC------cEEEEEc------cccccccccc--CCCCeEEEecCCCEEEEEecccceeeeee------cccceee
Confidence            9998743      4444331      2222233333  34568888889999999996 45555555      2222222


Q ss_pred             ceEEEcCCCcEEEEeCCCCEEEEEcCC----------CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        249 RGVAVDDQGYISVGDSGNNRIQIFTPD----------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                        ..+.+++.++++++.++.|++|+..          ...+..+      .+|...+.+++++  +.++++++.|+.|++
T Consensus       222 --~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~H~~~V~~v~~d--~~~l~s~s~Dg~i~i  291 (293)
T d1p22a2         222 --RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL------VEHSGRVFRLQFD--EFQIVSSSHDDTILI  291 (293)
T ss_dssp             --EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE------CCCSSCCCCEEEC--SSCEEECCSSSEEEE
T ss_pred             --eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe------cCCCCCEEEEEEc--CCEEEEEecCCEEEE
Confidence              3456677899999999999999831          2344555      5677889999985  568999999999999


Q ss_pred             C
Q psy13998        319 F  319 (319)
Q Consensus       319 ~  319 (319)
                      |
T Consensus       292 W  292 (293)
T d1p22a2         292 W  292 (293)
T ss_dssp             E
T ss_pred             e
Confidence            8

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.80  E-value=1.3e-17  Score=130.47  Aligned_cols=199  Identities=14%  Similarity=0.163  Sum_probs=141.6

Q ss_pred             ceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC----CCEEEEEecCC
Q psy13998        100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN----NHRVQIFDVNG  175 (319)
Q Consensus       100 ~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~----~~~i~~~~~~~  175 (319)
                      ..+++|+++|++|+++...++|+.|+++++......     ......|.+++++++|++|++...    .+.+...+..+
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-----~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-----VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-----ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-----eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            368999999999999999999999998776443332     122346899999999999998754    34566665554


Q ss_pred             ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998        176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPR  249 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (319)
                      ..      .......    ......|+.++++++|++|+++..      .+.++.+++++..+..+      ...+..|+
T Consensus       117 ~~------~~~~~~~----~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~------~~~~~~pn  180 (319)
T d2dg1a1         117 DN------LQDIIED----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI------IQNISVAN  180 (319)
T ss_dssp             CS------CEEEECS----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE------EEEESSEE
T ss_pred             ce------eeeeccC----CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEE------eeccceee
Confidence            21      1111111    122356889999999999999764      34688899888766555      34566799


Q ss_pred             eEEEcCCCc-EEEEeCCCCEEEEEcC--CCceEEeeccc-CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        250 GVAVDDQGY-ISVGDSGNNRIQIFTP--DGQFLRAFGCW-GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       250 ~i~~~~~g~-~~v~~~~~~~i~~~~~--~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +|+++++++ +|++....++|+.|+.  ++......... .........|.+|+++++|++|++...+++|.+|
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~  254 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF  254 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEE
Confidence            999999985 8999999999999984  44332221100 0002233458999999999999999999998875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.6e-17  Score=128.91  Aligned_cols=229  Identities=14%  Similarity=0.234  Sum_probs=143.9

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSD  127 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~  127 (319)
                      .||...|.. +++++|+++++++.|++|++    |+..+.+.+..+    ..+.++++++  +++++++.++.+++|+..
T Consensus        13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~v----Wd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKV----WSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEE----EETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETT
T ss_pred             CCcCCceEE-EEEECCCEEEEEeCCCeEEE----EECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecccccccccc
Confidence            477778765 46678999999999999999    998877766644    3567888876  488888899999999954


Q ss_pred             CcEEEEecCCCccCCCCCCceeE--------------------------------------EEeCCCeEEEEeCCCCEEE
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYI--------------------------------------AVSNTNRVIVSDSNNHRVQ  169 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~g~~~~~~~~~~~i~  169 (319)
                      ..........     ....+...                                      ........++.++.++.++
T Consensus        86 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          86 TGECIHTLYG-----HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             TTEEEEEECC-----CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             cccceecccc-----cceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            4332221110     00011111                                      1111222333444455555


Q ss_pred             EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFP  248 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~  248 (319)
                      +|+....      +.+..+      ..+.  .....+.+++..+++++.++.|++||. .++.+..+      ..+...+
T Consensus       161 ~~d~~~~------~~~~~~------~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~------~~~~~~v  220 (342)
T d2ovrb2         161 VWDPETE------TCLHTL------QGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL------TGHQSLT  220 (342)
T ss_dssp             EEEGGGT------EEEEEE------CCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE------CCCCSCE
T ss_pred             Eeecccc------eeeEEE------cCcc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEe------cccccce
Confidence            5554321      122222      1111  233455567888999999999999996 55666666      4444455


Q ss_pred             ceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        249 RGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       249 ~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .++.++  ++++++++.++.|++|+. ..+....+...   ..+...+..+.  .+++++++++.|+.|++|
T Consensus       221 ~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~s~s~Dg~i~iw  285 (342)
T d2ovrb2         221 SGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP---NKHQSAVTCLQ--FNKNFVITSSDDGTVKLW  285 (342)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST---TSCSSCEEEEE--ECSSEEEEEETTSEEEEE
T ss_pred             eEEecC--CCEEEEEcCCCEEEEEeccccccccccccc---ceeeeceeecc--cCCCeeEEEcCCCEEEEE
Confidence            555554  568999999999999995 45555555211   22333444444  456789999999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.79  E-value=1.6e-18  Score=141.59  Aligned_cols=270  Identities=11%  Similarity=0.042  Sum_probs=158.8

Q ss_pred             hccccceeeeecccCCCCCcC-------CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE--E---ecCcee
Q psy13998         35 YLQKRRLQFKIGSRGSEPGCF-------TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL--A---FTWPRG  102 (319)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~---~~~~~~  102 (319)
                      ++.+.+.+.++..|+...++.       ..|.+++|+|||+++++++.|++|++    |+..+.+...  .   ...+..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~v----wd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM----IDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEE----EETTSSSCEEEEEEECCSEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEE----EEccCCceeEEEEEeCCCCCcc
Confidence            344455556666665554432       57899999999999888888999999    8887665322  1   223444


Q ss_pred             ----eEEcCCCcE-EEEcCCCCeEEEEc-CCCcEEEEecCCCccC-----CCCCCceeEEEeCCCeE-EEEeCCCCEEEE
Q psy13998        103 ----IAVGPDNSI-VVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA-----GQLEHPHYIAVSNTNRV-IVSDSNNHRVQI  170 (319)
Q Consensus       103 ----l~~~~~g~~-~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~  170 (319)
                          ++++|||+. ++++..++.+.+|| ..+.............     .....+..++.++++.. +++....+.+..
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence                445578874 56667889999999 5566655543221110     11123345556665533 444455566655


Q ss_pred             EecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE-EEEeCCCCeEEEEeCC-CCEEEEeCCC----------
Q psy13998        171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVN-GRVITSFGSE----------  238 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~i~~~~~~-~~~~~~~~~~----------  238 (319)
                      ++.....    ...+..       ......+.+++++|++++ +++......+.+++.. ++.+......          
T Consensus       190 ~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (426)
T d1hzua2         190 VNYKDID----NLTVTS-------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  258 (426)
T ss_dssp             EECSSSS----SCEEEE-------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEE
T ss_pred             EEecccc----ceeeEE-------eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceee
Confidence            5543210    001111       123356788999988865 4555566667777643 3222221100          


Q ss_pred             ---------------CC-----------------------CcccccCcceEEEcCCCcEEEEe-------CCCCEEEEEc
Q psy13998        239 ---------------GS-----------------------EEGQLKFPRGVAVDDQGYISVGD-------SGNNRIQIFT  273 (319)
Q Consensus       239 ---------------~~-----------------------~~~~~~~~~~i~~~~~g~~~v~~-------~~~~~i~~~~  273 (319)
                                     +.                       ..++...+..++++|+|+.++++       ..+++|.+||
T Consensus       259 ~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence                           00                       01234457889999999877753       2467899999


Q ss_pred             -CCCceEEee---cccCCCCCCCCCcceEEEccCCc-EEEEe----CCCCeEEeC
Q psy13998        274 -PDGQFLRAF---GCWGSGDGEFKGLEGVAVMSNGN-ILVCD----RENHRIQVF  319 (319)
Q Consensus       274 -~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~~g~-~~v~~----~~~~~i~v~  319 (319)
                       .+++...++   +.......+...+..++|+|||+ +|++.    +.++.|+||
T Consensus       339 ~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~  393 (426)
T d1hzua2         339 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV  393 (426)
T ss_dssp             TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEE
T ss_pred             CCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEE
Confidence             455544332   11111123456688899999998 55653    457888887

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=2e-17  Score=130.95  Aligned_cols=235  Identities=11%  Similarity=0.096  Sum_probs=142.8

Q ss_pred             ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEE
Q psy13998         60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVG  132 (319)
Q Consensus        60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~  132 (319)
                      +++++++++++++++.+++|.+    ||+.+.+.+..+.     .|.+++++|||+ +|+++..++.|.+|| .+++.+.
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v----~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHV----VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEE----EETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CccCCCCCcEEEEEcCCCEEEE----EECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            4688999999999999999999    9999887766432     578999999997 568888899999999 6677776


Q ss_pred             EecCCCccCCCCCCceeEEEeCCCeEEEEeC------------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998        133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS------------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH  200 (319)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (319)
                      .+............|.++++++||+.+++..            .+..+.+|+.....      .......    ......
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~----~~~~~~  146 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL------EAKPVRT----FPMPRQ  146 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG------GBCCSEE----EECCSS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce------eeeEEEe----eeccCc
Confidence            6654332233334678999999996654432            35667777664321      1100000    000011


Q ss_pred             ceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC---------------------------------------
Q psy13998        201 PHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS---------------------------------------  240 (319)
Q Consensus       201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~---------------------------------------  240 (319)
                      ...+...+++++++.+   ..+.+|+. +++.+..+.....                                       
T Consensus       147 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (346)
T d1jmxb_         147 VYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  223 (346)
T ss_dssp             CCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             eEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeE
Confidence            1223333344444332   12333332 2222222110000                                       


Q ss_pred             -----------------------CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcc
Q psy13998        241 -----------------------EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLE  296 (319)
Q Consensus       241 -----------------------~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~  296 (319)
                                             ...+......+.+++++..++... .+.|.+||. +++.+..+.       ....+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-------~~~~~~  295 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-------LDHTYY  295 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-------CSSCCC
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-------CCCCEE
Confidence                                   001112234556666654444333 468999994 677777662       234689


Q ss_pred             eEEEccCCcEEEEeCCCCeEEeC
Q psy13998        297 GVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       297 ~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +++|+|||+++++++.++.|++|
T Consensus       296 ~va~s~DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEE
Confidence            99999999977778889999987

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.79  E-value=1.9e-17  Score=129.01  Aligned_cols=196  Identities=16%  Similarity=0.246  Sum_probs=137.9

Q ss_pred             CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE--------EecCceeeEEcCCCcEEEEcCC---------
Q psy13998         56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGPDNSIVVADSS---------  117 (319)
Q Consensus        56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~g~~~~~~~~---------  117 (319)
                      ..|.+|+++++|+ +|+++. .+.+.+    ++.+......        .+..|++++++++|++|+++..         
T Consensus        71 g~P~Gl~~~~dg~~l~vad~-~~~i~~----~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADM-RLGLLV----VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TTEEEE----EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred             CcceeEEEeCCCCEEEEEEC-CCeEEE----EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc
Confidence            3588999999987 455544 456777    5664332221        2446899999999999998642         


Q ss_pred             ------CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCC-----eEEEEeCCCCEEEEEecCCceeeecCceee
Q psy13998        118 ------NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRVQIFDVNGRVFQSDGTFVG  186 (319)
Q Consensus       118 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  186 (319)
                            .+.|+.++.+|+.....       .....|+++++++++     .+|++++..++|..|++...-.....+...
T Consensus       146 ~~~~~~~G~v~~~~~dg~~~~~~-------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~  218 (314)
T d1pjxa_         146 RSMQEKFGSIYCFTTDGQMIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             BTTSSSCEEEEEECTTSCEEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             ceeccCCceEEEEeecCceeEee-------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE
Confidence                  34788888888765543       234567999999865     489999999999999864311000001111


Q ss_pred             eecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC
Q psy13998        187 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS  264 (319)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~  264 (319)
                      .+.     ......|.+|+++.+|++|++....+.|++|++++ .....+      ......|.+++|.++++ +||+.+
T Consensus       219 ~~~-----~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i------~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         219 HIP-----GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI------RCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             ECC-----CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE------ECSSSCEEEEEECTTSSEEEEEET
T ss_pred             Ecc-----ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEE------ECCCCCEEEEEEeCCCCEEEEEEC
Confidence            111     11234588999999999999999899999999875 444444      22334688999999885 999999


Q ss_pred             CCCEEEEEcC
Q psy13998        265 GNNRIQIFTP  274 (319)
Q Consensus       265 ~~~~i~~~~~  274 (319)
                      .+++|+.++.
T Consensus       288 ~~g~i~~~~~  297 (314)
T d1pjxa_         288 ENNAVWKFEW  297 (314)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCcEEEEEC
Confidence            9999999984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.78  E-value=6.4e-16  Score=119.75  Aligned_cols=214  Identities=19%  Similarity=0.317  Sum_probs=153.6

Q ss_pred             EEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCC
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ  143 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~  143 (319)
                      .||+++.+++|.+    ||..+.+.+..+.   .|.+++++|+|+ +|+++..+++|.+|| .+++.+..+..       
T Consensus         4 ~yV~~~~~~~v~v----~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-------   72 (301)
T d1l0qa2           4 AYIANSESDNISV----IDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-------   72 (301)
T ss_dssp             EEEEETTTTEEEE----EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-------
T ss_pred             EEEEECCCCEEEE----EECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-------
Confidence            5788999999999    9998887766553   689999999997 567888889999999 56777776632       


Q ss_pred             CCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE-EEEeCCCCe
Q psy13998        144 LEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHR  221 (319)
Q Consensus       144 ~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~  221 (319)
                      ...|..+++++++. ++++...+..+.+|+..+.      +....+.       ....+..+++++++.. +++...+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN------TVAGTVK-------TGKSPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-------CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             cccccccccccccccccccccccceeeecccccc------eeeeecc-------ccccceEEEeecCCCeeeeeeccccc
Confidence            14578999999885 5667778889999998753      3333321       2345678999999864 566777888


Q ss_pred             EEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEE
Q psy13998        222 VQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVA  299 (319)
Q Consensus       222 i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~  299 (319)
                      +.+|+.. +.....+       .....|..+++++++. ++++....+.+.+++.....+...      ......|.+++
T Consensus       140 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  206 (301)
T d1l0qa2         140 VSVINTVTKAVINTV-------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------VKVEAAPSGIA  206 (301)
T ss_dssp             EEEEETTTTEEEEEE-------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------EECSSEEEEEE
T ss_pred             eeeeeccccceeeec-------ccCCCceEEEeeccccceeeecccccccccccccceeeeec------ccccCCcceee
Confidence            9999964 4444444       2334578899999875 666767778888888654443332      12345688999


Q ss_pred             EccCCc-EEEEe--CCCCeEEeC
Q psy13998        300 VMSNGN-ILVCD--RENHRIQVF  319 (319)
Q Consensus       300 ~~~~g~-~~v~~--~~~~~i~v~  319 (319)
                      +++++. +++++  ..++.|++|
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEE
T ss_pred             ccccccccccccccceeeeeeee
Confidence            999998 44443  345677765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=2.5e-16  Score=123.98  Aligned_cols=223  Identities=13%  Similarity=0.134  Sum_probs=148.9

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeEEec------CceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCc
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAFT------WPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGN  139 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~  139 (319)
                      +++++++.+++|.+    ||.++.+.+..+.      .|.+++++|||+ +|+++..++.|.+|| .+++.+..+.....
T Consensus         2 ~~~vt~~~d~~v~v----~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVV----IDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEE----EETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             eEEEEEcCCCEEEE----EECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC
Confidence            47889999999999    9998887776542      578999999997 467888889999999 67787776643321


Q ss_pred             cCCCCCCceeEEEeCCCeEEEEeC------------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        140 KAGQLEHPHYIAVSNTNRVIVSDS------------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       140 ~~~~~~~~~~l~~~~~g~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                       ..+...+.+++++|+++.++...            .+..+.+||....      +....+.       ....+.+++++
T Consensus        78 -~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~-------~~~~~~~~~~s  143 (337)
T d1pbyb_          78 -EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL------SRRKAFE-------APRQITMLAWA  143 (337)
T ss_dssp             -TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT------EEEEEEE-------CCSSCCCEEEC
T ss_pred             -cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC------eEEEecc-------ccCCceEEEEc
Confidence             11234567899999987665543            3456777777643      3333321       22457789999


Q ss_pred             CCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCC---------------------------------------------
Q psy13998        208 NTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSE---------------------------------------------  241 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~---------------------------------------------  241 (319)
                      ++|+++++...  .+.+||.. ++....+......                                             
T Consensus       144 ~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (337)
T d1pbyb_         144 RDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             TTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccE
Confidence            99977766543  45667743 3333332110000                                             


Q ss_pred             ---------------cccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998        242 ---------------EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN  305 (319)
Q Consensus       242 ---------------~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~  305 (319)
                                     ..+...+..+++++++.+++..  ++.|.+||. +++.+..+.       ....+.+++|+|||+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dG~  292 (337)
T d1pbyb_         222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-------LPHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-------CSSCCCEEEECTTSC
T ss_pred             EEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-------CCCCEEEEEECCCCC
Confidence                           0001122345566666655444  478999994 567777662       335689999999999


Q ss_pred             EEEEeCCCCeEEeC
Q psy13998        306 ILVCDRENHRIQVF  319 (319)
Q Consensus       306 ~~v~~~~~~~i~v~  319 (319)
                      .+++++.++.|++|
T Consensus       293 ~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         293 TVWLGGALGDLAAY  306 (337)
T ss_dssp             EEEEESBSSEEEEE
T ss_pred             EEEEEeCCCcEEEE
Confidence            88888899999987

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=1.4e-15  Score=121.70  Aligned_cols=279  Identities=10%  Similarity=-0.024  Sum_probs=171.9

Q ss_pred             hccchhhhhhhhhhcccccccCCCccchhccccce----------eeeecccCCCCCc---------------CCCCcce
Q psy13998          7 AKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRL----------QFKIGSRGSEPGC---------------FTWPRGI   61 (319)
Q Consensus         7 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~---------------~~~~~~v   61 (319)
                      ..|..+++++.++.......++|+|+++++.....          ...+..|+...++               ...|..+
T Consensus        51 v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~  130 (373)
T d2madh_          51 VLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMN  130 (373)
T ss_pred             EEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcE
Confidence            45566777777665444557889999999776532          2334444443332               1346788


Q ss_pred             EEcCCCcEEE-E-eCCCCeEEEeccccccccceeeEEecCceeeEEcCCCc-EEEEcCCCCeEEEEcC-CCcEEEEecCC
Q psy13998         62 AVGPDNSIVV-A-DSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IVVADSSNHRVQVFQS-DGTFVGKFGSM  137 (319)
Q Consensus        62 ~~~~~g~~~~-~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~  137 (319)
                      .++++++.++ . ...++.+.+    |+..+.....+...+.++.++++|+ +|++...++.+.+|+. .++........
T Consensus       131 ~~s~dg~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~  206 (373)
T d2madh_         131 ANTPNNADLLFFQFAAGPAVGL----VVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA  206 (373)
T ss_pred             EEEeCCCcEEEEEEcCCCceEE----eeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee
Confidence            9999988433 2 245667888    8887777777888899999999985 6788889999999994 44444333221


Q ss_pred             CccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-------
Q psy13998        138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-------  210 (319)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------  210 (319)
                      ............+..++++. ++....++.+.+++..+............................+++++++       
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  285 (373)
T d2madh_         207 MLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT  285 (373)
T ss_pred             ccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec
Confidence            11112222234445555554 4445567888888876532110000000000000000011122334444444       


Q ss_pred             ---cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc-CCCceEEeec
Q psy13998        211 ---RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT-PDGQFLRAFG  283 (319)
Q Consensus       211 ---~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~-~~g~~~~~~~  283 (319)
                         ..++....++.+.+||. +++.+..+.       ....+.+++|+|||+  +|+++..++.|++|| .+|+.++.+ 
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~-  357 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST-  357 (373)
T ss_pred             CCCceEEeecCCCeEEEEECCCCcEEEEec-------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE-
Confidence               33444555678899995 666666652       234578999999997  678899999999999 579999988 


Q ss_pred             ccCCCCCCCCCcceEEEccC
Q psy13998        284 CWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~  303 (319)
                           ..+...|..|++.++
T Consensus       358 -----~~~g~~P~~l~~~~~  372 (373)
T d2madh_         358 -----VELGSGPQVLSVMNE  372 (373)
T ss_pred             -----CCCCCCCcEEEEecC
Confidence                 556678999988765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-15  Score=115.09  Aligned_cols=224  Identities=15%  Similarity=0.253  Sum_probs=147.8

Q ss_pred             CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CC
Q psy13998         53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SD  127 (319)
Q Consensus        53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~  127 (319)
                      ++...|+++  +++|+++++++.|++|++    |+..+.+....+.    .+.++++  +++++++++.|+.|.+|+ ..
T Consensus        13 ~~~~~V~c~--~~d~~~l~sgs~Dg~i~v----Wd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          13 ETSKGVYCL--QYDDQKIVSGLRDNTIKI----WDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SSCCCEEEE--ECCSSEEEEEESSSCEEE----EESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCCEEEE--EEcCCEEEEEeCCCeEEE----EECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            344556654  567999999999999999    9988777666543    4455554  678999999999999999 45


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      +........        ..............++++..++.+.+|+.......   ......      ..+......+.+ 
T Consensus        85 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~v~~~~~-  146 (293)
T d1p22a2          85 GEMLNTLIH--------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---TLRRVL------VGHRAAVNVVDF-  146 (293)
T ss_dssp             CCEEEEECC--------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---EEEEEE------CCCSSCEEEEEE-
T ss_pred             ccccccccc--------cccccccccccccceeecccccceeEeeccccccc---cccccc------ccccccccccee-
Confidence            555444421        11233444555566777778899999998743110   011111      112222333333 


Q ss_pred             CCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeeccc
Q psy13998        208 NTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCW  285 (319)
Q Consensus       208 ~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~  285 (319)
                       ....+++.+.++.|++|+. +++.+..+      .++...+..+.+  ++..++++..++.|++|+. +++.+...   
T Consensus       147 -~~~~~~~~s~d~~i~~~d~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~---  214 (293)
T d1p22a2         147 -DDKYIVSASGDRTIKVWNTSTCEFVRTL------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL---  214 (293)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE---
T ss_pred             -cccccccccCCCceeeecCCCCcEEEEE------cccccccccccC--CCCeEEEecCCCEEEEEecccceeeeee---
Confidence             3456677778999999996 56666666      333333444444  4568899999999999994 56666665   


Q ss_pred             CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        286 GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                         ..+...+.  .+.+++.++++++.|+.|++|
T Consensus       215 ---~~~~~~v~--~~~~~~~~l~sg~~dg~i~iw  243 (293)
T d1p22a2         215 ---EGHEELVR--CIRFDNKRIVSGAYDGKIKVW  243 (293)
T ss_dssp             ---CCCSSCEE--EEECCSSEEEEEETTSCEEEE
T ss_pred             ---cccceeee--eccccceEEEEEcCCCEEEEE
Confidence               34444443  456678899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.4e-16  Score=120.66  Aligned_cols=220  Identities=9%  Similarity=0.068  Sum_probs=151.4

Q ss_pred             CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998         52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV  131 (319)
Q Consensus        52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  131 (319)
                      .||...+.+|+++|    +++++.|++|++    |+..+.. ..|-..+.++++.+++ .+++++.|+++++|+....  
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~----Wd~~~~~-~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~--   77 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIME----WSSSSMH-QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH--   77 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEE----TTTTEEE-CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE--
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEE----EECCCCC-CCCCCCEEEEEecCCC-eEEEEeecccccccccccc--
Confidence            58899999999987    899999999999    8886432 2344567788887654 5677788999999983211  


Q ss_pred             EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998        132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR  211 (319)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  211 (319)
                       .+         ...|..+++.+++.++++.. ++.+.+|+....      ..+..+..         .....++.+++.
T Consensus        78 -~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~---------~~~~~~~~~~~~  131 (287)
T d1pgua2          78 -EF---------GSQPKVASANNDGFTAVLTN-DDDLLILQSFTG------DIIKSVRL---------NSPGSAVSLSQN  131 (287)
T ss_dssp             -EC---------SSCEEEEEECSSSEEEEEET-TSEEEEEETTTC------CEEEEEEC---------SSCEEEEEECSS
T ss_pred             -cc---------ccceeeeeeccCCceEEEee-cccceeeeccce------eeeeeccc---------cceeeeeeccCc
Confidence             11         13467788888888777765 456777776532      33333211         112345666665


Q ss_pred             EEEE-eCCCCeEEEEeCCCCE-EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCC
Q psy13998        212 VIVS-DSNNHRVQIFDVNGRV-ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSG  288 (319)
Q Consensus       212 ~~v~-~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~  288 (319)
                      .+++ ...++.+++|+..... ...+.     ..+...+.+++++|++.++++++.++.|++|+.. ++......     
T Consensus       132 ~~~v~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----  201 (287)
T d1pgua2         132 YVAVGLEEGNTIQVFKLSDLEVSFDLK-----TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW-----  201 (287)
T ss_dssp             EEEEEETTTSCEEEEETTEEEEEEECS-----SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-----
T ss_pred             ceeeeccccceeeeeeccccceeeeee-----eccCCceeEEEeccCccccccccccccccceeecccccccccc-----
Confidence            5544 4445679999975433 23221     2233457899999999999999999999999954 44333211     


Q ss_pred             CCCCCCcceEEEccC----------CcEEEEeCCCCeEEeC
Q psy13998        289 DGEFKGLEGVAVMSN----------GNILVCDRENHRIQVF  319 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~----------g~~~v~~~~~~~i~v~  319 (319)
                      ..|...+.+++|+|+          +.++++++.|+.|++|
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw  242 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY  242 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEE
Confidence            456778899998764          4689999999999998

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5e-15  Score=111.65  Aligned_cols=214  Identities=17%  Similarity=0.176  Sum_probs=155.4

Q ss_pred             CCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcE
Q psy13998         57 WPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTF  130 (319)
Q Consensus        57 ~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~  130 (319)
                      .+.+|+++. ++++|.++...+.|+.    .++.......    .+..|.+++++. .+++|+++...+.|.+.+.+|+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~----~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGR----ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEE----EESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEE----EEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            456788987 4568999999999998    6664332222    235789999986 46799999989999999988775


Q ss_pred             EEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        131 VGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      ...+.     ......|.+++++| .|.+|++....  ..|...+++|..       ...+.     ......|.+|+++
T Consensus       113 ~~~l~-----~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-------~~~i~-----~~~~~~P~glaiD  175 (263)
T d1npea_         113 RRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-------RRILA-----QDNLGLPNGLTFD  175 (263)
T ss_dssp             CEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-------CEEEE-----CTTCSCEEEEEEE
T ss_pred             EEEEe-----cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-------ceeee-----eecccccceEEEe
Confidence            44432     22346789999998 67888887543  457777777631       11111     2234678999999


Q ss_pred             CC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeeccc
Q psy13998        208 NT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCW  285 (319)
Q Consensus       208 ~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~  285 (319)
                      +. +++|+++...+.|...+.+|...+.+      ......|.+|+++ ++.+|+++...++|..++. .|+.+..+.  
T Consensus       176 ~~~~~lYw~d~~~~~I~~~~~~g~~~~~v------~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~--  246 (263)
T d1npea_         176 AFSSQLCWVDAGTHRAECLNPAQPGRRKV------LEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH--  246 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEEEEEEE------EECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             ecCcEEEEEeCCCCEEEEEECCCCCeEEE------ECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC--
Confidence            64 57999999999999999998776655      2334568899998 5789999999999999996 466665553  


Q ss_pred             CCCCCCCCCcceEEEccC
Q psy13998        286 GSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~  303 (319)
                         +.....|.+|++.++
T Consensus       247 ---~~~~~~~~gi~v~~~  261 (263)
T d1npea_         247 ---PHKQTRLYGITIALS  261 (263)
T ss_dssp             ---CSSCCCCCCEEEECS
T ss_pred             ---CCCCCCcceEEEeCC
Confidence               234456888888654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=2.1e-16  Score=125.74  Aligned_cols=185  Identities=13%  Similarity=0.109  Sum_probs=133.9

Q ss_pred             eeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--CEEEEEecCCcee
Q psy13998        102 GIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--HRVQIFDVNGRVF  178 (319)
Q Consensus       102 ~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--~~i~~~~~~~~~~  178 (319)
                      .-.|+| ||+++++++ .+.|++|+.++..+..+       .|...+.+++|+|||+.+++.+.+  ..|.+|+.++.. 
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~-------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-   77 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-   77 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc-------cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-
Confidence            356898 898877765 56999999666555444       244678999999999877655433  478999988632 


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQG  257 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g  257 (319)
                           . ..+      ..+...+.+++++|+|+++++...++.+++|+.++ +....+      ..+...+.+++++|+|
T Consensus        78 -----~-~~~------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~spdg  139 (360)
T d1k32a3          78 -----A-EKF------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE------RSREAMITDFTISDNS  139 (360)
T ss_dssp             -----E-EEC------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSSCCCCEEECTTS
T ss_pred             -----E-EEe------eCCCceEEeeeecccccccceeccccccccccccccceeeee------ecccccccchhhccce
Confidence                 2 222      34456678899999999999999999999999754 444444      3344567789999999


Q ss_pred             cEEEEe----------CCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        258 YISVGD----------SGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       258 ~~~v~~----------~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      ++++..          ..++.+++|+..+.....+      ..+......++++|||+.+++.+.++.+++|
T Consensus       140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA------TTENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC------SCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             eeeeeeccccccceeeccccceeeeccccCceeee------cccccccccccccCCCCEEEEEeCCCceEcc
Confidence            877643          3445789999765554444      3455567889999999988888887776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.72  E-value=1.8e-15  Score=117.34  Aligned_cols=200  Identities=13%  Similarity=0.108  Sum_probs=141.5

Q ss_pred             CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998         99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF  178 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~  178 (319)
                      .+.++++++||++|+++..+++|+.++++|+.......       ...|.+++++++|++|++...++.+..++..+.  
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~-------~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~--   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS--   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECT--
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcC-------CCCcceEEEcCCCCeEEEecCCceEEEEEeccc--
Confidence            46789999999999999999999999998886554422       256899999999999999888888877765432  


Q ss_pred             eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC-----CCCcccccCcceEEE
Q psy13998        179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE-----GSEEGQLKFPRGVAV  253 (319)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~  253 (319)
                        .+.......     ......+++++++++|++|++...++.++.++..+.....+...     .........+.++.+
T Consensus       100 --~~~~~~~~~-----~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~  172 (302)
T d2p4oa1         100 --DGTVETLLT-----LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR  172 (302)
T ss_dssp             --TSCEEEEEE-----CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred             --ccceeeccc-----cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence              111111111     12235688999999999999999999999999765543332111     111223345677887


Q ss_pred             cCCCcEEEEeCCCCEEEEEcCCCce-EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        254 DDQGYISVGDSGNNRIQIFTPDGQF-LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       254 ~~~g~~~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +. +.+|++....++|+.++.++.. ......    ......|.+|++++||++|++...+++|..|
T Consensus       173 ~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~pdgia~d~dG~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         173 FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEI----FVEQTNIDDFAFDVEGNLYGATHIYNSVVRI  234 (302)
T ss_dssp             ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEE----EEESCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             cC-CceeeecCCCCeEEecccccccccccccc----ccCCCCCcceEECCCCCEEEEEcCCCcEEEE
Confidence            75 4799999999999999854321 111100    1123468999999999999999888877653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.72  E-value=7.3e-15  Score=113.12  Aligned_cols=224  Identities=13%  Similarity=0.141  Sum_probs=152.4

Q ss_pred             cceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-Ee-cCceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEe
Q psy13998         59 RGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-AF-TWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKF  134 (319)
Q Consensus        59 ~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~  134 (319)
                      .+..|++ ++++|.++-..++|..    |+..++.... .+ ..+.++++.++|++|++..  ..+.++|.. ++.....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r----~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~--~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHE----LHLASGRKTVHALPFMGSALAKISDSKQLIASD--DGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEE----EETTTTEEEEEECSSCEEEEEEEETTEEEEEET--TEEEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEE----EECCCCeEEEEECCCCcEEEEEecCCCEEEEEe--CccEEeecccceeeEEe
Confidence            4567776 7789999988999999    8876654332 22 2567889989999988763  479999954 5543332


Q ss_pred             cCCCccCCCCCCceeEEEeCCCeEEEEeCCC----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998        135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN  210 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
                      ....  ......++++.++++|++|++....    +.-.+|...      +++....       ......++++++++++
T Consensus        95 ~~~~--~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~------~g~~~~~-------~~~~~~~Ng~~~s~d~  159 (295)
T d2ghsa1          95 ELES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA------KGKVTKL-------FADISIPNSICFSPDG  159 (295)
T ss_dssp             CSST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE------TTEEEEE-------EEEESSEEEEEECTTS
T ss_pred             eeec--CCCcccceeeEECCCCCEEEEeccccccccceeEeeec------CCcEEEE-------eeccCCcceeeecCCC
Confidence            2211  1223467899999999999986422    222233221      1222211       1224568899999987


Q ss_pred             -cEEEEeCCCCeEEEEeCCCCE------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeec
Q psy13998        211 -RVIVSDSNNHRVQIFDVNGRV------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFG  283 (319)
Q Consensus       211 -~~~v~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~  283 (319)
                       .+|++++..+.|+.|+.+...      ...+...   .+....|.+++++++|++|++....+.|.+|+++|+.+..+.
T Consensus       160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~---~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred             ceEEEeecccceeeEeeecccccccccceEEEecc---CcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEec
Confidence             488999999999999854211      1111000   223346899999999999999988999999999999999884


Q ss_pred             ccCCCCCCCCCcceEEEc-cCCc-EEEEeCC
Q psy13998        284 CWGSGDGEFKGLEGVAVM-SNGN-ILVCDRE  312 (319)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~-~~g~-~~v~~~~  312 (319)
                            .....|++++|. +|.+ +|||...
T Consensus       237 ------lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         237 ------VPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ------CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ------CCCCceEEEEEeCCCCCEEEEEECC
Confidence                  334579999996 5654 8888654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=6.1e-16  Score=126.08  Aligned_cols=191  Identities=10%  Similarity=0.039  Sum_probs=129.4

Q ss_pred             cCCCcEEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc--EEEEecCC
Q psy13998         64 GPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQS-DGT--FVGKFGSM  137 (319)
Q Consensus        64 ~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~--~~~~~~~~  137 (319)
                      +++.-++++.+.+++|.+    ||..+.+.+..+.   .|.+++|+|||+.+++++.++.+.+||. +++  ....+...
T Consensus        29 ~~~~~~~v~~~d~g~v~v----~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIAL----IDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             CGGGEEEEEETTTTEEEE----EETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             CCCcEEEEEEcCCCEEEE----EECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence            333345699999999999    9999888877654   6899999999998887788999999994 333  33444221


Q ss_pred             CccCCCCCCceeEEE----eCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccC-----CcCCCCCCceeEEEc
Q psy13998        138 GNKAGQLEHPHYIAV----SNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-----NKAGQLEHPHYIAVS  207 (319)
Q Consensus       138 ~~~~~~~~~~~~l~~----~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  207 (319)
                             ..+.++++    +|||+. ++++..++.+.+||..+.      +.+..+....     ........+.++.++
T Consensus       105 -------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  171 (432)
T d1qksa2         105 -------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILAS  171 (432)
T ss_dssp             -------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             -------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc------cceeeeccCCccccceeccCCCceeEEEEC
Confidence                   23345544    568865 678888999999998753      3333222111     011223345678889


Q ss_pred             CCCc-EEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCC
Q psy13998        208 NTNR-VIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       208 ~~g~-~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g  276 (319)
                      ++|. ++++...++.|.+++.. ++......     ......|.+++++|+|+ ++++...++.+.+++.+.
T Consensus       172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~-----i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTE-----ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEE-----EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CCCCEEEEEEccCCeEEEEEccCCCcceEEE-----EcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            9885 56777788999999964 34332211     11223578999999997 566666778899998543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.4e-14  Score=113.76  Aligned_cols=207  Identities=13%  Similarity=0.066  Sum_probs=134.7

Q ss_pred             CCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeEEe---------cCceeeEEcCCCcEEEEcC---------
Q psy13998         56 TWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFLAF---------TWPRGIAVGPDNSIVVADS---------  116 (319)
Q Consensus        56 ~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~g~~~~~~~---------  116 (319)
                      ..|.+++++|||++ |++++.++.|.+    ||..+.+.....         ..+.+++++|+++.+++..         
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v----~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVK----IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEE----EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEE----EECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            56889999999985 578888999999    998877766533         3567899999997655432         


Q ss_pred             ---CCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee------------
Q psy13998        117 ---SNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS------------  180 (319)
Q Consensus       117 ---~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~------------  180 (319)
                         .+..+.+|| ..++....+..       ...+.+++++++|+++++.+.+  +.+||........            
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~  180 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFEA-------PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETY  180 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEEC-------CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTB
T ss_pred             ccccccceeeccccCCeEEEeccc-------cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccce
Confidence               346788888 55555555532       2457889999999887776544  5667765432110            


Q ss_pred             ---cCceeeeec----------------------------------ccCC-----cCCCCCCceeEEEcCCCcEEEEeCC
Q psy13998        181 ---DGTFVGKFG----------------------------------SMGN-----KAGQLEHPHYIAVSNTNRVIVSDSN  218 (319)
Q Consensus       181 ---~~~~~~~~~----------------------------------~~~~-----~~~~~~~~~~~~~~~~g~~~v~~~~  218 (319)
                         ++.......                                  ..+.     ...+...+..+++++++.+++..  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  258 (337)
T d1pbyb_         181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--  258 (337)
T ss_dssp             CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--
T ss_pred             ecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--
Confidence               000000000                                  0000     00111233445666766655544  


Q ss_pred             CCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998        219 NHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC  284 (319)
Q Consensus       219 ~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~  284 (319)
                      ++.|.+||.. ++.+..+.       ....+.+++++|||+.+++++.++.|.+|| .+++.+.++..
T Consensus       259 ~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         259 YNVLESFDLEKNASIKRVP-------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             ESEEEEEETTTTEEEEEEE-------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             cccEEEEECCCCcEEEEEc-------CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            4689999964 55555542       234578999999999888888999999999 46788887744

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.71  E-value=6.3e-16  Score=126.08  Aligned_cols=198  Identities=11%  Similarity=0.056  Sum_probs=122.9

Q ss_pred             CCCcceEEcCCCc--EEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc
Q psy13998         56 TWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQS-DGT  129 (319)
Q Consensus        56 ~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~  129 (319)
                      ..|..+.++.+.+  ++|+.+.+++|++    ||..+.+.+..+.   .|.+++|+|||+.+++++.++.|.+||. +++
T Consensus        19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~v----wD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          19 DRPKKQLNDLDLPNLFSVTLRDAGQIAL----VDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEE----EETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             cCCCcccccCCCCeEEEEEEcCCCEEEE----EECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            3445555555543  6788999999999    9999888777553   7899999999998888888999999994 454


Q ss_pred             EE--EEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccC-----CcCCCCCCc
Q psy13998        130 FV--GKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-----NKAGQLEHP  201 (319)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  201 (319)
                      ..  ..+...   .++...+.+++++|||+. ++++..++.+.+||....      ..........     ........+
T Consensus        95 ~~~~~~i~~~---~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  165 (426)
T d1hzua2          95 PTKVAEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL------EPKQIVSTRGMTVDTQTYHPEPRV  165 (426)
T ss_dssp             CEEEEEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC------CEEEEEECCEECSSSCCEESCCCE
T ss_pred             eeEEEEEeCC---CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc------ceeEEeeccCCCccceeecCCCce
Confidence            32  233211   122222334445578875 566678899999998753      2222221110     001112233


Q ss_pred             eeEEEcCCCc-EEEEeCCCCeEEEEeC-CCC--EEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEc
Q psy13998        202 HYIAVSNTNR-VIVSDSNNHRVQIFDV-NGR--VITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFT  273 (319)
Q Consensus       202 ~~~~~~~~g~-~~v~~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~  273 (319)
                      ..++.++++. ++++....+.+..++. ++.  .+..+       .....+.+++++|+|+ ++++....+.+.+++
T Consensus       166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~  235 (426)
T d1hzua2         166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-------GAAPFLADGGWDSSHRYFMTAANNSNKVAVID  235 (426)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-------ECCSSEEEEEECTTSCEEEEEETTCSEEEEEE
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe-------ccCCccEeeeECCCCcEEEeeeecccceeeee
Confidence            4566677764 4455556667776663 222  22222       2344678899999986 455555666777776

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.69  E-value=8.6e-14  Score=111.10  Aligned_cols=271  Identities=11%  Similarity=-0.005  Sum_probs=157.1

Q ss_pred             cccccccCCCccchhccccc-----eeeeecccCCCCCc------CCCCcceEEcCCCcEEEEeC----------CCCeE
Q psy13998         21 VSGIGQVGTTPRSQYLQKRR-----LQFKIGSRGSEPGC------FTWPRGIAVGPDNSIVVADS----------SNHRV   79 (319)
Q Consensus        21 ~~~i~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~------~~~~~~v~~~~~g~~~~~~~----------~~~~v   79 (319)
                      ...+...+++|++..+....     ....+..++...++      .....+++|+|||+.++...          .++.|
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v   99 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEE
Confidence            45677888999998764321     11122222222222      13344799999999766543          35789


Q ss_pred             EEeccccccccceeeEEe-----------cCceeeEEcCCCcE-EEEc-CCCCeEEEEcCC-CcEEEEecCCCccCCCCC
Q psy13998         80 QVCFPHFDLKTNCVFLAF-----------TWPRGIAVGPDNSI-VVAD-SSNHRVQVFQSD-GTFVGKFGSMGNKAGQLE  145 (319)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~g~~-~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~  145 (319)
                      .+    ||..+.+....+           ..+..+.++++++. ++.. ..++.+.+|+.. .+.....          .
T Consensus       100 ~v----~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~  165 (373)
T d2madh_         100 EV----FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----------S  165 (373)
T ss_pred             EE----EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----------c
Confidence            99    888877665432           24566778888763 3332 334566777733 3333332          3


Q ss_pred             CceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        146 HPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       146 ~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                      .+.++.++++| .+|++.+.++.+.+|+......      ................+..+..++++. ++....++.+++
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~  238 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA------GAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQ  238 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee------eEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEE
Confidence            45788899987 4677888999999999875422      111111110111122233445555544 444455778888


Q ss_pred             EeCCCCEEEEeCCC-CCC------cccccCcceEEEcCCCc----------EEEEeCCCCEEEEEc-CCCceEEeecccC
Q psy13998        225 FDVNGRVITSFGSE-GSE------EGQLKFPRGVAVDDQGY----------ISVGDSGNNRIQIFT-PDGQFLRAFGCWG  286 (319)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~------~~~~~~~~~i~~~~~g~----------~~v~~~~~~~i~~~~-~~g~~~~~~~~~~  286 (319)
                      ++............ ...      .........+++++++.          .++....++.+.+|| .+++.+..+    
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~----  314 (373)
T d2madh_         239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI----  314 (373)
T ss_pred             EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe----
Confidence            88654322211100 000      00011123345555543          334455667889999 567777776    


Q ss_pred             CCCCCCCCcceEEEccCCc--EEEEeCCCCeEEeC
Q psy13998        287 SGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF  319 (319)
Q Consensus       287 ~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v~  319 (319)
                         .+...+.+++|+|||+  +|++++.++.|++|
T Consensus       315 ---~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~  346 (373)
T d2madh_         315 ---SLGHDVDAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             ---cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEE
Confidence               2445689999999997  67899999999998

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.3e-14  Score=106.51  Aligned_cols=191  Identities=16%  Similarity=0.177  Sum_probs=141.8

Q ss_pred             CceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCc
Q psy13998         99 WPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGR  176 (319)
Q Consensus        99 ~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~  176 (319)
                      .+.+|+++.. +.+|+++...+.|+..+.+|.....+.     ......|.+++++. .+++|++....+.|.+.++++.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-----~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-----RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-----EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            4667888865 569999999999999997766544442     22346789999996 7799999999999999998864


Q ss_pred             eeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCC--CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEE
Q psy13998        177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV  253 (319)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (319)
                      ..       ....     ......|.+++++| .|.+|++....  ..|...+++|.....+.     ......|.+|++
T Consensus       112 ~~-------~~l~-----~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~-----~~~~~~P~glai  174 (263)
T d1npea_         112 QR-------RVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGLTF  174 (263)
T ss_dssp             SC-------EEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-----CTTCSCEEEEEE
T ss_pred             eE-------EEEe-----cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee-----eecccccceEEE
Confidence            21       1110     22346789999997 45788887643  45888888886544442     234567899999


Q ss_pred             cCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998        254 DDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV  318 (319)
Q Consensus       254 ~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v  318 (319)
                      ++. +++|+++...++|...+.+|...+.+.      .....|.+|++. ++.+|+++..+++|..
T Consensus       175 D~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~------~~~~~P~~lav~-~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------EGLQYPFAVTSY-GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEEEEEEEE------ECCCSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eecCcEEEEEeCCCCEEEEEECCCCCeEEEE------CCCCCcEEEEEE-CCEEEEEECCCCEEEE
Confidence            976 469999999999999999987766652      234568999998 5689999988887753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=2.1e-14  Score=116.93  Aligned_cols=247  Identities=12%  Similarity=0.088  Sum_probs=147.7

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eEE---ecCceeeEE----cCCCc-EEEEcCCCCeEEEEc
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FLA---FTWPRGIAV----GPDNS-IVVADSSNHRVQVFQ  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~---~~~~~~l~~----~~~g~-~~~~~~~~~~i~~~~  125 (319)
                      ..|++++|+|||+++++++.++.+++    |++.+.+.  ...   ...+.++++    +|||+ +++++..++.|.+||
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~----~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d  137 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNM----IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  137 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEE----EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEE----EEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEe
Confidence            46999999999999888888999999    88766542  222   234555554    56887 567888899999999


Q ss_pred             -CCCcEEEEecCCCcc-----CCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998        126 -SDGTFVGKFGSMGNK-----AGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL  198 (319)
Q Consensus       126 -~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (319)
                       .+++.+..+......     ......+.++.++++|. ++++...++.|.+|+......    ..+..+       ...
T Consensus       138 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~----~~~~~i-------~~g  206 (432)
T d1qksa2         138 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTEI-------SAE  206 (432)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEEE-------ECC
T ss_pred             CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc----ceEEEE-------ccc
Confidence             677776665432211     12234556788899875 467778889999998764210    011111       122


Q ss_pred             CCceeEEEcCCCcE-EEEeCCCCeEEEEeCCCCEE-EEeCCCCCCcccccCcceEEEcCCCcEEEEeC-CCCEEEEEcCC
Q psy13998        199 EHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVI-TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-GNNRIQIFTPD  275 (319)
Q Consensus       199 ~~~~~~~~~~~g~~-~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-~~~~i~~~~~~  275 (319)
                      ..|.+++++|+|++ +++....+.+.+++.+.... ..+. .+....+............+..+.+.. .++.|.+|...
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED-TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE-CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             CccccceECCCCCEEEEeccccceEEEeecccceEEEEec-cCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence            45789999999975 55555677899999755443 3332 211111222222333433444444443 46778777632


Q ss_pred             C--------ceEEeecccCCC-------------------CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        276 G--------QFLRAFGCWGSG-------------------DGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       276 g--------~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      .        +....+...+..                   ..+......+++ ||++.+++++.|+.+++|
T Consensus       286 ~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w  355 (432)
T d1qksa2         286 PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTL  355 (432)
T ss_dssp             TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEE
T ss_pred             cccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEec
Confidence            1        222222111000                   000011234554 788888888888888876

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.6e-14  Score=112.24  Aligned_cols=233  Identities=15%  Similarity=0.220  Sum_probs=144.2

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCCc-EEEEcCCCCeEEEEcC--CCcEEEEecCCC
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDNS-IVVADSSNHRVQVFQS--DGTFVGKFGSMG  138 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~--~~~~~~~~~~~~  138 (319)
                      .+||+++.+++|++    |++.+.+.+.      +-..+.+|+++|||+ +|+++..++.|.+|+.  .+........  
T Consensus         5 ~v~v~~~~~~~I~v----~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~--   78 (333)
T d1ri6a_           5 TVYIASPESQQIHV----WNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE--   78 (333)
T ss_dssp             EEEEEEGGGTEEEE----EEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE--
T ss_pred             EEEEECCCCCcEEE----EEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee--
Confidence            47899999999999    8875443222      234679999999997 5577777899999983  2222221111  


Q ss_pred             ccCCCCCCceeEEEeCCCeEEE-EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE-EEEe
Q psy13998        139 NKAGQLEHPHYIAVSNTNRVIV-SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSD  216 (319)
Q Consensus       139 ~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~~  216 (319)
                        ......|.+++++|+|++++ +...++.+.+|+.......      .....    ..+...+.++.++++++. ++.+
T Consensus        79 --~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~------~~~~~----~~~~~~~~~v~~s~d~~~~~~~~  146 (333)
T d1ri6a_          79 --SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV------GVVDV----VEGLDGCHSANISPDNRTLWVPA  146 (333)
T ss_dssp             --EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE------EEEEE----ECCCTTBCCCEECTTSSEEEEEE
T ss_pred             --cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce------ecccc----cCCCccceEEEeeecceeeeccc
Confidence              11234678999999997554 5556788888876543211      11100    223456788999999865 4555


Q ss_pred             CCCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC--Cce---EEeecccCCC
Q psy13998        217 SNNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD--GQF---LRAFGCWGSG  288 (319)
Q Consensus       217 ~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~--g~~---~~~~~~~~~~  288 (319)
                      .....|.+|+...  ......... ........|..+++++++. ++++....+...+++..  ...   ..........
T Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  225 (333)
T d1ri6a_         147 LKQDRICLFTVSDDGHLVAQDPAE-VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN  225 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEE-EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             cccceeeEEEeccCCcceeeecee-eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecC
Confidence            5677899988432  222111000 0022334678899999975 55666677777777632  221   1222221222


Q ss_pred             CCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998        289 DGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       289 ~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~  319 (319)
                      ......+..+++++|++ ++++...++.+.+|
T Consensus       226 ~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~  257 (333)
T d1ri6a_         226 FSDTRWAADIHITPDGRHLYACDRTASLITVF  257 (333)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCccccceeEEEecccCceeeecccCCeEEEE
Confidence            23445678899999998 77777788877765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.6e-14  Score=105.15  Aligned_cols=215  Identities=19%  Similarity=0.160  Sum_probs=151.0

Q ss_pred             CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccce------eeE--EecCceeeEEcCC-CcEEEEcCCCCeEEEE
Q psy13998         55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNC------VFL--AFTWPRGIAVGPD-NSIVVADSSNHRVQVF  124 (319)
Q Consensus        55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~------~~~--~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~  124 (319)
                      +..+.+|++++ .+++|.++...+.|..    .++....      ...  .+..|.+|++++. +++|+++...++|.++
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~----~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEE----EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEE----EEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence            45678899987 4568999988888887    5443211      111  2357889999864 5799999999999999


Q ss_pred             cCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998        125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH  202 (319)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (319)
                      +.+|.....+.     ......|.+++++| .|.+|++... ...|...+++|..       ...+.     ......|.
T Consensus       105 ~~~g~~~~~~~-----~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-------~~~l~-----~~~~~~p~  167 (266)
T d1ijqa1         105 DTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLV-----TENIQWPN  167 (266)
T ss_dssp             ETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEE-----CSSCSCEE
T ss_pred             ecCCceEEEEE-----cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-------eeccc-----ccccceee
Confidence            98887654432     22346789999998 6888988754 4578888887642       11111     22346789


Q ss_pred             eEEEcCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEE
Q psy13998        203 YIAVSNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLR  280 (319)
Q Consensus       203 ~~~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~  280 (319)
                      ++++++. +++|+++...+.|...+.+|.....+...   ......|.+|+++ ++.+|+++..++.|+.++. +|+...
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~---~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  243 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC---CCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceE
Confidence            9999975 57999999999999999887543333111   2334578899998 4689999999999999984 555555


Q ss_pred             eecccCCCCCCCCCcceEEE
Q psy13998        281 AFGCWGSGDGEFKGLEGVAV  300 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~  300 (319)
                      .+      ......|.+|.+
T Consensus       244 ~~------~~~~~~p~~i~v  257 (266)
T d1ijqa1         244 LL------AENLLSPEDMVL  257 (266)
T ss_dssp             EE------ECSCSCCCCEEE
T ss_pred             EE------EcCCCCceEEEE
Confidence            44      234445666655

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=1.2e-14  Score=115.21  Aligned_cols=271  Identities=12%  Similarity=0.045  Sum_probs=156.5

Q ss_pred             hccchhhhhhhhhhcccccccCCCccchhccccc----------eeeeecccCCCCCc---------------CCCCcce
Q psy13998          7 AKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRR----------LQFKIGSRGSEPGC---------------FTWPRGI   61 (319)
Q Consensus         7 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~---------------~~~~~~v   61 (319)
                      ..|..+++++.+........++|||+++++....          .+..+..|+...+.               ...|..+
T Consensus        32 v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~  111 (355)
T d2bbkh_          32 VIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMT  111 (355)
T ss_dssp             EEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGE
T ss_pred             EEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceE
Confidence            4566677777766655556788999999776432          23445555443322               2457889


Q ss_pred             EEcCCCcEEEEe--CCCCeEEEeccccccccceeeEEecCc-----------eeeEEcCCCcE-EEEcCCCCeEEEEcCC
Q psy13998         62 AVGPDNSIVVAD--SSNHRVQVCFPHFDLKTNCVFLAFTWP-----------RGIAVGPDNSI-VVADSSNHRVQVFQSD  127 (319)
Q Consensus        62 ~~~~~g~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~g~~-~~~~~~~~~i~~~~~~  127 (319)
                      +|+++|+.++..  ..+..+.+    |+..+......+..+           ..++++++++. ++.....+.+..++..
T Consensus       112 ~~s~dg~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         112 SLTPDGKTLLFYQFSPAPAVGV----VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EECTTSSEEEEEECSSSCEEEE----EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             EEecCCCeeEEecCCCCceeee----eecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            999999855443  45667888    888777666544432           23444444432 2222222223332211


Q ss_pred             CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                              ..  ...+.......++.+++..++....++.+++|+..+.....-......................++++
T Consensus       188 --------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  257 (355)
T d2bbkh_         188 --------VF--HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH  257 (355)
T ss_dssp             --------CC--SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred             --------cc--cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe
Confidence                    00  01111223345666666666667788999999987532110000000000000000011223458888


Q ss_pred             CCCcEEEEeC----------CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc-
Q psy13998        208 NTNRVIVSDS----------NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT-  273 (319)
Q Consensus       208 ~~g~~~v~~~----------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~-  273 (319)
                      +++..++...          ..+.|.+||. +++.+..+      . ....|.+++++|||+  +|+++..++.|++|| 
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~------~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF------E-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE------E-EEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             CCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe------c-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            8886554332          1257999995 56666665      2 224578999999996  677888899999999 


Q ss_pred             CCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                      .+|+.++.+      ..+...|..+.+..+|
T Consensus       331 ~tg~~~~~i------~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         331 ESGEELRSV------NQLGHGPQVITTADMG  355 (355)
T ss_dssp             TTCCEEEEE------CCCCSSCCEEECCCCC
T ss_pred             CCCCEEEEE------eCcCCCccEEEeCCCC
Confidence            589999888      4455567777766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.4e-13  Score=101.18  Aligned_cols=212  Identities=18%  Similarity=0.137  Sum_probs=148.3

Q ss_pred             CeEEEeccccccccceeeE---EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcE----EEEecCCCccCCCCCCce
Q psy13998         77 HRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTF----VGKFGSMGNKAGQLEHPH  148 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~  148 (319)
                      ..|+.    +++.+.....   ....+.+++++.. +.+|+++...+.|...+.++..    .....     ......|.
T Consensus        10 ~~I~~----~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-----~~~~~~p~   80 (266)
T d1ijqa1          10 HEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDIQAPD   80 (266)
T ss_dssp             SSEEE----EETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSSCSCCC
T ss_pred             CeEEE----EECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-----eCCCCCcc
Confidence            45777    6665433222   3456788999875 4689999888889888755421    11111     22346789


Q ss_pred             eEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC-CCeEEEE
Q psy13998        149 YIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIF  225 (319)
Q Consensus       149 ~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~-~~~i~~~  225 (319)
                      +|++++ .+++|+++...++|.+++++|...       ....     ......|.+++++| .|.+|+++.. .+.|...
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-------~~~~-----~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-------KTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSE-------EEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceE-------EEEE-----cCCCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence            999997 779999999999999999987421       1111     22346799999997 5788888764 4589999


Q ss_pred             eCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998        226 DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG  304 (319)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g  304 (319)
                      +++|.....+.     ......|.+|++++. +++|+++...+.|...+.+|.....+...   ......|.+|++. ++
T Consensus       149 ~~dGs~~~~l~-----~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~---~~~~~~p~~lav~-~~  219 (266)
T d1ijqa1         149 GLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVF-ED  219 (266)
T ss_dssp             ETTSCCEEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEE-TT
T ss_pred             ccCCCceeccc-----ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC---CCcccccEEEEEE-CC
Confidence            99987666552     234567899999986 46999999999999999887643333211   2345578999998 56


Q ss_pred             cEEEEeCCCCeEEe
Q psy13998        305 NILVCDRENHRIQV  318 (319)
Q Consensus       305 ~~~v~~~~~~~i~v  318 (319)
                      .+|+++..++.|..
T Consensus       220 ~ly~td~~~~~I~~  233 (266)
T d1ijqa1         220 KVFWTDIINEAIFS  233 (266)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCeEEE
Confidence            89999988888753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=5.2e-14  Score=110.90  Aligned_cols=239  Identities=15%  Similarity=0.123  Sum_probs=141.4

Q ss_pred             cCCCccchhccccceeeeecccCCCCCc---------CCCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeEE
Q psy13998         27 VGTTPRSQYLQKRRLQFKIGSRGSEPGC---------FTWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFLA   96 (319)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~   96 (319)
                      ++++++++++.+++.+..+..|+...++         -..|.+++++|||++ |+++..++.|.+    ||+.+......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~----~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG----IDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE----EETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEE----EeCccCeeeee
Confidence            5789999999988877777777665443         246889999999984 688888999999    88887766553


Q ss_pred             e----------cCceeeEEcCCCcEEEEcC------------CCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998         97 F----------TWPRGIAVGPDNSIVVADS------------SNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS  153 (319)
Q Consensus        97 ~----------~~~~~l~~~~~g~~~~~~~------------~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (319)
                      +          ..|.+++++|||+.+++..            .+..+.+|+ .+++....+...    ........+...
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  153 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----PMPRQVYLMRAA  153 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----ECCSSCCCEEEC
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee----eccCceEEEEec
Confidence            2          3578899999997544332            345667776 333322111100    001123445555


Q ss_pred             CCCeEEEEeCCCCEEEEEecCCcee---------------eecCceee--------------------------------
Q psy13998        154 NTNRVIVSDSNNHRVQIFDVNGRVF---------------QSDGTFVG--------------------------------  186 (319)
Q Consensus       154 ~~g~~~~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~--------------------------------  186 (319)
                      +++++++++   ..+.+|+......               .+++..+.                                
T Consensus       154 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         154 DDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             TTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            666666654   2345555432110               00000000                                


Q ss_pred             ---eeccc-CC-----cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998        187 ---KFGSM-GN-----KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ  256 (319)
Q Consensus       187 ---~~~~~-~~-----~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  256 (319)
                         .+... +.     ...+......+.+++++..++... .+.|.+||. +++.+..+.       ....+.+++|+||
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-------~~~~~~~va~s~D  302 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-------LDHTYYCVAFDKK  302 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-------CSSCCCEEEECSS
T ss_pred             eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-------CCCCEEEEEEcCC
Confidence               00000 00     001112223445555554333332 457999996 555555552       2235889999999


Q ss_pred             CcEEEEeCCCCEEEEEcC-CCceEEeecc
Q psy13998        257 GYISVGDSGNNRIQIFTP-DGQFLRAFGC  284 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~~-~g~~~~~~~~  284 (319)
                      |+.+++++.++.|.+||. +++.+..+..
T Consensus       303 G~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         303 GDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             SSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            987778888999999994 6788887743

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=2.4e-14  Score=114.31  Aligned_cols=270  Identities=7%  Similarity=-0.053  Sum_probs=158.4

Q ss_pred             hccchhhhhhhhhhcccccccCCCccchhccccc----------eeeeecccCCCCCc---------------CCCCcce
Q psy13998          7 AKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRR----------LQFKIGSRGSEPGC---------------FTWPRGI   61 (319)
Q Consensus         7 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~---------------~~~~~~v   61 (319)
                      .++..+++++.+........++++|+++.+...+          .+..+..|+...+.               ...|.++
T Consensus        50 ~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~  129 (368)
T d1mdah_          50 VSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII  129 (368)
T ss_dssp             EEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred             EEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccce
Confidence            3455566666655544555678899998766533          34445555544332               2457789


Q ss_pred             EEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcCCCCeEEEEcC--CCcEEEEecCC
Q psy13998         62 AVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQS--DGTFVGKFGSM  137 (319)
Q Consensus        62 ~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~--~~~~~~~~~~~  137 (319)
                      +|+|||+ ++++...++.+.+    |+..+.+....+..+.+..+.+.+ ..+++.+.++++..++.  .+...... ..
T Consensus       130 a~SpDGk~l~va~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~-~~  204 (368)
T d1mdah_         130 GNCASSACLLFFLFGSSAAAG----LSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV-GA  204 (368)
T ss_dssp             EECTTSSCEEEEECSSSCEEE----EEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC-CC
T ss_pred             EECCCCCEEEEEeCCCCeEEE----EECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee-ec
Confidence            9999998 4566667899999    999888777766655444333333 46666777777777762  22222111 11


Q ss_pred             CccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC----CcCCCCCCceeEEEcCCCc-E
Q psy13998        138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG----NKAGQLEHPHYIAVSNTNR-V  212 (319)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~  212 (319)
                      .....+...+......+++..+....  +.+.+++.......    .........    ........+..+++++++. +
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~  278 (368)
T d1mdah_         205 QCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGAT----MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCE----EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             ccccccccceeecccccCcEEEEecC--CCEEEEeecCCceE----EEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence            11122223445667777777666543  44555554432110    000000000    0000112334588888774 4


Q ss_pred             EEEeCC--------CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc-CCCceEE
Q psy13998        213 IVSDSN--------NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT-PDGQFLR  280 (319)
Q Consensus       213 ~v~~~~--------~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~-~~g~~~~  280 (319)
                      |++...        ...|.+||. +++.+..+       .....+.+++++|||+  +|+++..++.|++|| .+|+.++
T Consensus       279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-------~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPI-------SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEEECC-------EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EEEecCCCceeecCCceEEEEECCCCcEeEEe-------cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            444321        246889996 45655554       1234588999999985  688889999999999 5788888


Q ss_pred             eecccCCCCCCCCCcceEEEc
Q psy13998        281 AFGCWGSGDGEFKGLEGVAVM  301 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~  301 (319)
                      .+.       ....|++|++-
T Consensus       352 ~i~-------~g~~P~~l~~~  365 (368)
T d1mdah_         352 SVE-------LDKGPESLSVQ  365 (368)
T ss_dssp             ECC-------CCSCCCEEECC
T ss_pred             EEE-------CCCCCCEEEEe
Confidence            872       23458888764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.58  E-value=2.7e-13  Score=107.62  Aligned_cols=251  Identities=10%  Similarity=0.071  Sum_probs=142.9

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCCc-EEEEc--CCCCeEEEEc-
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDNS-IVVAD--SSNHRVQVFQ-  125 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g~-~~~~~--~~~~~i~~~~-  125 (319)
                      ..|..|+++++++.+++.. .+.+..    |.........      .-..|..++++++++ +|++.  ...+.|..+. 
T Consensus        40 ~~~s~la~s~d~~~ly~~~-~~~~~~----~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAA-MKKWSS----FAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEE-BTEEEE----EEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEe-CCcEEE----EEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            4567899999998654443 345666    5544332222      113678889999986 34433  3345555543 


Q ss_pred             -CCCcEEEEe--cCCCc--------cCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998        126 -SDGTFVGKF--GSMGN--------KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN  193 (319)
Q Consensus       126 -~~~~~~~~~--~~~~~--------~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  193 (319)
                       .++.....+  ...+.        .......+++++++|+|+ +|+++....+|.+|+...     .+.....-...  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~-----~g~~~~~~~~~--  187 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-----SGEVELVGSVD--  187 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-----TSCEEEEEEEE--
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccC-----CCceeecccee--
Confidence             222221111  10000        011224578999999996 566777778898887542     11211110000  


Q ss_pred             cCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC---EEEEeC---CCC--------CCcccccCcceEEEcCCCc
Q psy13998        194 KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR---VITSFG---SEG--------SEEGQLKFPRGVAVDDQGY  258 (319)
Q Consensus       194 ~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~---~~~~~~---~~~--------~~~~~~~~~~~i~~~~~g~  258 (319)
                      .......|..++++|+++ +|++...++.|.+|+.+..   .+....   ...        ........+..+.++|+|+
T Consensus       188 ~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  267 (365)
T d1jofa_         188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCC
Confidence            012235789999999995 5688888999999986432   222211   000        0112233466899999997


Q ss_pred             -EEEEeCCC-----CEEEEEc--CCCceEEeecccCCCCCCCCCcceEEEcc-CCc-EEEEeCCCCeEEeC
Q psy13998        259 -ISVGDSGN-----NRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMS-NGN-ILVCDRENHRIQVF  319 (319)
Q Consensus       259 -~~v~~~~~-----~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~-~~v~~~~~~~i~v~  319 (319)
                       +|++...+     ..|..|+  ..+...+..... ........|.+++++| +|+ +|+++..++.|.+|
T Consensus       268 ~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EEEEEcccCCCccceEEEEEEecCCCceeeEeEee-EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence             55655433     3477776  344433221100 0022345789999998 788 78888899999886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=6.8e-13  Score=104.96  Aligned_cols=235  Identities=12%  Similarity=0.043  Sum_probs=137.1

Q ss_pred             CCcceEEcCCCcEE-EEe---------CCCCeEEEeccccccccceeeEEe-----------cCceeeEEcCCCcEE-EE
Q psy13998         57 WPRGIAVGPDNSIV-VAD---------SSNHRVQVCFPHFDLKTNCVFLAF-----------TWPRGIAVGPDNSIV-VA  114 (319)
Q Consensus        57 ~~~~v~~~~~g~~~-~~~---------~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~g~~~-~~  114 (319)
                      ...+++|+|||+.+ +++         ..++.|.+    ||..+......+           ..|..++++++++.+ ++
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v----~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~  123 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV----FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY  123 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE----ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEE
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE----EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEe
Confidence            44579999999944 443         23678999    888776655432           256789999998744 43


Q ss_pred             c-CCCCeEEEEc-CCCcEEEEecCCCccCC-CCCCceeEEEeCCCeEEE-EeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998        115 D-SSNHRVQVFQ-SDGTFVGKFGSMGNKAG-QLEHPHYIAVSNTNRVIV-SDSNNHRVQIFDVNGRVFQSDGTFVGKFGS  190 (319)
Q Consensus       115 ~-~~~~~i~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  190 (319)
                      . ..+..+.+|+ .+++.+..+........ .......+++.++++.++ .....+.+..++....      .       
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~------~-------  190 (355)
T d2bbkh_         124 QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF------H-------  190 (355)
T ss_dssp             ECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC------S-------
T ss_pred             cCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc------c-------
Confidence            3 3456788898 56666666543211000 001223455666654433 3333344444433211      0       


Q ss_pred             cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCc-------ccccCcceEEEcCCCcEEEEe
Q psy13998        191 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEE-------GQLKFPRGVAVDDQGYISVGD  263 (319)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~g~~~v~~  263 (319)
                          ...........+.+++..++....++.+++|+..+..+..+.......       ........+++++++..++..
T Consensus       191 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~  266 (355)
T d2bbkh_         191 ----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL  266 (355)
T ss_dssp             ----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             ----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEE
Confidence                111111223455556666666677889999997654333221110000       011223568899998644432


Q ss_pred             C----------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEeC
Q psy13998        264 S----------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF  319 (319)
Q Consensus       264 ~----------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v~  319 (319)
                      .          ..+.|.+|| .+++.+..+.       ....|.+++++|||+  +++++..++.|++|
T Consensus       267 ~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-------~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~  328 (355)
T d2bbkh_         267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFE-------MGHEIDSINVSQDEKPLLYALSTGDKTLYIH  328 (355)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEE-------EEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             eccCCceeecCCCCeEEEEeCCCCcEEEEec-------CCCCEEEEEEcCCCCeEEEEEECCCCEEEEE
Confidence            2          125799999 4677777662       234689999999997  67888999999987

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.47  E-value=8.7e-12  Score=95.68  Aligned_cols=187  Identities=13%  Similarity=0.115  Sum_probs=126.0

Q ss_pred             CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe--------cCceeeEEcCCCcEEEEcCCC----CeEEE
Q psy13998         56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF--------TWPRGIAVGPDNSIVVADSSN----HRVQV  123 (319)
Q Consensus        56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~g~~~~~~~~~----~~i~~  123 (319)
                      ..|.++++.++|+++++..  ..+..    ++..++......        ..++++.++++|++|++....    +.-.+
T Consensus        59 ~~~~~i~~~~dg~l~va~~--~gl~~----~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASD--DGLFL----RDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             SCEEEEEEEETTEEEEEET--TEEEE----EETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CCcEEEEEecCCCEEEEEe--CccEE----eecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeE
Confidence            3567899999999888754  35777    777655433211        246889999999999986321    12233


Q ss_pred             Ec-CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998        124 FQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP  201 (319)
Q Consensus       124 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (319)
                      |. .+++.....       .....++++++++++ .+|++++..+.|..|+++.......++......    .......|
T Consensus       133 ~~~~~g~~~~~~-------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~----~~~~~g~p  201 (295)
T d2ghsa1         133 YHVAKGKVTKLF-------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID----STGIKGGM  201 (295)
T ss_dssp             EEEETTEEEEEE-------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE----CTTSSSEE
T ss_pred             eeecCCcEEEEe-------eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec----cCcccccc
Confidence            33 345443332       223567999999987 478999999999999876432111111111110    12234568


Q ss_pred             eeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEc-CCC-cEEEEeCC
Q psy13998        202 HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQG-YISVGDSG  265 (319)
Q Consensus       202 ~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~g-~~~v~~~~  265 (319)
                      .+++++.+|++|++....+.|.+|+++|+.+..+..      ....|++++|. ++. .+||+...
T Consensus       202 dG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~l------P~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         202 DGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV------PGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC------SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecC------CCCceEEEEEeCCCCCEEEEEECC
Confidence            999999999999999888999999999999888832      23468999996 453 58887653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=1.1e-12  Score=104.59  Aligned_cols=233  Identities=13%  Similarity=0.073  Sum_probs=137.2

Q ss_pred             EcCCCc-EEEEeCCCCeEEEeccccccccceeeE--E---ecCceeeEEcCCCc-EEEEcCCCCeE--------------
Q psy13998         63 VGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--A---FTWPRGIAVGPDNS-IVVADSSNHRV--------------  121 (319)
Q Consensus        63 ~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~---~~~~~~l~~~~~g~-~~~~~~~~~~i--------------  121 (319)
                      .+|||+ +|+++..+.+|.+    +++.+.+...  .   ...|++++++|+|+ .|++......+              
T Consensus        79 gtpDGr~lfV~d~~~~rVav----IDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVAR----IRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEE----EETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             ccCCCCEEEEEcCCCCEEEE----EECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence            467898 5688889999999    8888766544  2   34789999999986 45554333333              


Q ss_pred             ----EEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCCE--------------EEEEecCCc-eeee
Q psy13998        122 ----QVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHR--------------VQIFDVNGR-VFQS  180 (319)
Q Consensus       122 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~--------------i~~~~~~~~-~~~~  180 (319)
                          ..+| .+.+...++...       ..|..++++|+|++.++.+ ....              +.+.+.... .+.+
T Consensus       155 ~~~~~~iD~~t~~v~~qI~v~-------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         155 YTMFTAIDAETMDVAWQVIVD-------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             EEEEEEEETTTCSEEEEEEES-------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cceEEeecCccceeeEEEecC-------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                3355 233344333221       3578899999997655443 2222              222221000 0011


Q ss_pred             cCceeee--------ecccCC----cCCCCCCceeEEEcCCCcE-EEEeCCCCeEEEEeCCC-------CEE--EEeCCC
Q psy13998        181 DGTFVGK--------FGSMGN----KAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNG-------RVI--TSFGSE  238 (319)
Q Consensus       181 ~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~g~~-~v~~~~~~~i~~~~~~~-------~~~--~~~~~~  238 (319)
                      +|+....        ......    .......|.+++++|+|++ |+++..++.|.+||.+-       ..-  ..+  .
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~--~  305 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI--V  305 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE--E
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE--E
Confidence            1111100        000000    0112346899999999975 56778899999999531       100  000  0


Q ss_pred             CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-------Cc----eEEeecccCCCCCCCCCcceEEEccCCcEE
Q psy13998        239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-------GQ----FLRAFGCWGSGDGEFKGLEGVAVMSNGNIL  307 (319)
Q Consensus       239 ~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-------g~----~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  307 (319)
                      .. ......|...+|+++|+.|.+...+..|..|+.+       |.    .+..+ ......+|...+.+.+++|||+++
T Consensus       306 ~~-~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~-~v~y~~GH~~~~~~~t~~pdGk~l  383 (441)
T d1qnia2         306 AE-PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL-DVQYQPGHNHASLTESRDADGKWL  383 (441)
T ss_dssp             EC-CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE-ECSSCEEEEEETTTTSTTCCCCEE
T ss_pred             ee-cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecc-ccccCCCCCccccccccCCCCcEE
Confidence            00 1112245667899999999999999999999942       11    22221 111224677778889999999999


Q ss_pred             EEe
Q psy13998        308 VCD  310 (319)
Q Consensus       308 v~~  310 (319)
                      ++.
T Consensus       384 ~s~  386 (441)
T d1qnia2         384 VVL  386 (441)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=1.1e-11  Score=98.47  Aligned_cols=234  Identities=11%  Similarity=-0.029  Sum_probs=136.0

Q ss_pred             CcceEEcCCCcEEEEe----------CCCCeEEEeccccccccceeeEEe-----------cCceeeEEcCCCc-EEEEc
Q psy13998         58 PRGIAVGPDNSIVVAD----------SSNHRVQVCFPHFDLKTNCVFLAF-----------TWPRGIAVGPDNS-IVVAD  115 (319)
Q Consensus        58 ~~~v~~~~~g~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~g~-~~~~~  115 (319)
                      ...++++|+|+.++..          ..++.|.+    ||..+.+....+           ..|..++|+|||+ +|++.
T Consensus        67 ~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v----~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~  142 (368)
T d1mdah_          67 LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEV----FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEE----ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred             CCcceECCCCCEEEEEcccCccccccccCCeEEE----EECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEe
Confidence            3479999999854432          23567999    888776665533           2467899999996 66676


Q ss_pred             CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc
Q psy13998        116 SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK  194 (319)
Q Consensus       116 ~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (319)
                      ..++.+.+|| .+++....+......        .+. ......++..+.++++..++.....     ...... .....
T Consensus       143 ~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~-~~~~~~~v~~~~Dg~~~~~~~~~~~-----~~~~~~-~~~~~  207 (368)
T d1mdah_         143 FGSSAAAGLSVPGASDDQLTKSASCF--------HIH-PGAAATHYLGSCPASLAASDLAAAP-----AAAGIV-GAQCT  207 (368)
T ss_dssp             CSSSCEEEEEETTTEEEEEEECSSCC--------CCE-EEETTEEECCCCTTSCEEEECCSSC-----CCCEEC-CCCSC
T ss_pred             CCCCeEEEEECCCCcEeEEeeccCcc--------eEc-cCCCceEEEEcCCCCEEEEEecCCc-----eeeeee-ecccc
Confidence            7788999999 667777666432110        011 1123455556666776666654311     111100 00000


Q ss_pred             CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC-CCCc------ccccCcceEEEcCCCc-EEEEeCC-
Q psy13998        195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE-GSEE------GQLKFPRGVAVDDQGY-ISVGDSG-  265 (319)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~i~~~~~g~-~~v~~~~-  265 (319)
                      ......+.....++++..+...  .+.+++++............ ....      ........+++++++. +|++... 
T Consensus       208 ~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         208 GAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             TTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence            1122234456666776655544  34566666443222222111 1000      0112245688998875 5554322 


Q ss_pred             -------CCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEeC
Q psy13998        266 -------NNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF  319 (319)
Q Consensus       266 -------~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v~  319 (319)
                             ...|.+|| .+++.+..+.       ....+.+++++|||+  +|+++..++.|++|
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~~~~~-------~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~  342 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTSGPIS-------NGHDSDAIIAAQDGASDNYANSAGTEVLDIY  342 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCE-------EEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CceeecCCceEEEEECCCCcEeEEec-------CCCceeEEEECCCCCEEEEEEeCCCCeEEEE
Confidence                   24688999 4677776662       234689999999996  68899999999987

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.33  E-value=1e-10  Score=92.55  Aligned_cols=253  Identities=11%  Similarity=0.096  Sum_probs=137.2

Q ss_pred             ccccCCCccchhccccc--eeeeecccCCC-------CCcCCCCcceEEcCCCcE-EEEeC--CCCeEEEeccc------
Q psy13998         24 IGQVGTTPRSQYLQKRR--LQFKIGSRGSE-------PGCFTWPRGIAVGPDNSI-VVADS--SNHRVQVCFPH------   85 (319)
Q Consensus        24 i~~~~~~~~~~~l~~~~--~~~~~~~~~~~-------~~~~~~~~~v~~~~~g~~-~~~~~--~~~~v~~~~~~------   85 (319)
                      ++.++++|+++++-...  ....+......       ...-..|..++++++++. |++..  ..++|..+...      
T Consensus        42 ~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~  121 (365)
T d1jofa_          42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             CCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcc
Confidence            45678888887754322  11112111100       001146889999999983 44332  34555441000      


Q ss_pred             --cccccceee----E-----EecCceeeEEcCCCc-EEEEcCCCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEE
Q psy13998         86 --FDLKTNCVF----L-----AFTWPRGIAVGPDNS-IVVADSSNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIA  151 (319)
Q Consensus        86 --~~~~~~~~~----~-----~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (319)
                        +........    .     .-.++++++++|+|+ +|+++....+|.+|+  .+++....-....  ...-..|.+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~--~~~g~gPr~i~  199 (365)
T d1jofa_         122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA--PDPGDHPRWVA  199 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC--SSTTCCEEEEE
T ss_pred             eeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee--cCCCCceEEEE
Confidence              111101010    0     112578999999997 777777778898886  4454432211100  11235789999


Q ss_pred             EeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeeccc--------CCcCCCCCCceeEEEcCCCcE-EEEeCCC--
Q psy13998        152 VSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM--------GNKAGQLEHPHYIAVSNTNRV-IVSDSNN--  219 (319)
Q Consensus       152 ~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~-~v~~~~~--  219 (319)
                      ++|+++ +|++...+++|.+|+.+....... .........        .........+..+.++|+|++ |++...+  
T Consensus       200 f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~  278 (365)
T d1jofa_         200 MHPTGNYLYALMEAGNRICEYVIDPATHMPV-YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             ECCCCceEEEeccCCCEEEEEEecCCCceEE-EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC
Confidence            999986 567888899999999865311000 000111000        001122234567999999965 4554322  


Q ss_pred             ---CeEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcC-CCc-EEEEeCCCCEEEEEcCCCceEE
Q psy13998        220 ---HRVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDD-QGY-ISVGDSGNNRIQIFTPDGQFLR  280 (319)
Q Consensus       220 ---~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~-~~v~~~~~~~i~~~~~~g~~~~  280 (319)
                         ..|..|+.  .+......... ........|.+++++| +|+ +|+++..++.|.+|+.+++.+.
T Consensus       279 ~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~  345 (365)
T d1jofa_         279 ELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             TSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred             ccceEEEEEEecCCCceeeEeEee-EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCc
Confidence               33666663  34332221000 0022335689999998 676 7778888999999986555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=1e-10  Score=93.16  Aligned_cols=219  Identities=10%  Similarity=0.026  Sum_probs=128.4

Q ss_pred             EEEEeCCCCeEEEeccccccccceeeEEec--------------------------------Ccee--eEEcCCCc-EEE
Q psy13998         69 IVVADSSNHRVQVCFPHFDLKTNCVFLAFT--------------------------------WPRG--IAVGPDNS-IVV  113 (319)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------------------~~~~--l~~~~~g~-~~~  113 (319)
                      .|++++.+|.|++    |++.+...+..+.                                +|..  ....|||+ +|+
T Consensus        13 ~f~Sgg~sG~V~V----~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV   88 (441)
T d1qnia2          13 GFWSGGHQGEVRV----LGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFI   88 (441)
T ss_dssp             EEEECBTTCCEEE----EEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEE
T ss_pred             EEEeCCCCCcEEE----EeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEE
Confidence            3667777888888    7776665555321                                1221  22246786 678


Q ss_pred             EcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEE------------------EEec
Q psy13998        114 ADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQ------------------IFDV  173 (319)
Q Consensus       114 ~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~------------------~~~~  173 (319)
                      ++..+++|.++|. +.+....+..     .....|++++++++|+. |+++.....+.                  .+|.
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii~i-----P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKITHI-----PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-----TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             EcCCCCEEEEEECCCCcEeeEEec-----CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            8889999999994 5555554432     12357899999998863 55544333332                  2333


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CC---------------------------------
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN---------------------------------  219 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~---------------------------------  219 (319)
                      .+.      +...+..       ....|..++++|+|+..++.+ ..                                 
T Consensus       164 ~t~------~v~~qI~-------v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk  230 (441)
T d1qnia2         164 ETM------DVAWQVI-------VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGN  230 (441)
T ss_dssp             TTC------SEEEEEE-------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTC
T ss_pred             ccc------eeeEEEe-------cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCC
Confidence            321      1111111       113467788899886544432 21                                 


Q ss_pred             -------CeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC-------CceE--Ee
Q psy13998        220 -------HRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD-------GQFL--RA  281 (319)
Q Consensus       220 -------~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~-------g~~~--~~  281 (319)
                             +.+.+++.. ...+..+      + ....|.++.++|||+ +|+++..+++|.+||.+       ++.-  ..
T Consensus       231 ~~~v~~~~v~vvd~~~~~~v~~~I------P-vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~  303 (441)
T d1qnia2         231 FKTIGDSKVPVVDGRGESEFTRYI------P-VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT  303 (441)
T ss_dssp             CBCCTTCCCCEEECSSSCSSEEEE------C-CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred             EEEeCCCCcEEEEcccCCceEEEE------e-CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence                   122222211 1222333      1 124589999999997 56778899999999942       1110  00


Q ss_pred             ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998        282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~  319 (319)
                      +..  . ......|...+|+++|+.|.+...|..|..|
T Consensus       304 ~~~--~-~~~glgplh~~fd~~g~~yts~~~ds~v~kw  338 (441)
T d1qnia2         304 IVA--E-PELGLGPLHTTFDGRGNAYTTLFIDSQVCKW  338 (441)
T ss_dssp             EEE--C-CBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             EEe--e-cccccCcccceecCCceEEEcccccceEEEe
Confidence            000  0 1112246667899999999999999999877

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.09  E-value=2e-08  Score=81.10  Aligned_cols=158  Identities=11%  Similarity=0.176  Sum_probs=89.2

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee--EEec----------CceeeEEcCC----CcEEEEcCC-
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF--LAFT----------WPRGIAVGPD----NSIVVADSS-  117 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~----------~~~~l~~~~~----g~~~~~~~~-  117 (319)
                      +..|++|+|.|+|++||+....|+|++    ++..+....  ..+.          ...+|+++|+    +.+|++-+. 
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~----v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~  101 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILR----VNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK  101 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEE----EECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecC
Confidence            789999999999999999987899999    665443322  2221          2357999985    456765210 


Q ss_pred             -----C----C--eEEEEc--CCCcEEE--EecCCCccCCCCCCceeEEEeCCCeEEEEeCC------------------
Q psy13998        118 -----N----H--RVQVFQ--SDGTFVG--KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------------------  164 (319)
Q Consensus       118 -----~----~--~i~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------------------  164 (319)
                           +    .  .+..+.  .+.....  ............+.-..|+|.++|.+|++.+.                  
T Consensus       102 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~~~~  181 (450)
T d1crua_         102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHT  181 (450)
T ss_dssp             CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCC
T ss_pred             CCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccccccccC
Confidence                 0    1  233333  2221111  00000111122244578999999999998653                  


Q ss_pred             --------------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC
Q psy13998        165 --------------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN  218 (319)
Q Consensus       165 --------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  218 (319)
                                    .++|..++.++.....+. ...... ...-...+..|.+++++++|++|+++..
T Consensus       182 ~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP-~~~~~~-~ei~a~G~RNp~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         182 PTQQELNGKDYHTYMGKVLRLNLDGSIPKDNP-SFNGVV-SHIYTLGHRNPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             CCHHHHHTTCCTTCSSEEEEECTTSCCCTTCC-EETTEE-CSEEEBCCSEEEEEEECTTSCEEEEEEC
T ss_pred             cccccccccccccccCceEEeecccccccccc-cccccc-ceEEEeccccccceeecccceeeecccc
Confidence                          156666666553221000 000000 0000223567899999999999998754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.89  E-value=5.1e-06  Score=64.07  Aligned_cols=232  Identities=15%  Similarity=0.229  Sum_probs=130.9

Q ss_pred             CCCCcceEEcCCCcEEEEeCC------------CCeEEEeccccccccceeeE---E-e--------cCceeeEE--cCC
Q psy13998         55 FTWPRGIAVGPDNSIVVADSS------------NHRVQVCFPHFDLKTNCVFL---A-F--------TWPRGIAV--GPD  108 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~---~-~--------~~~~~l~~--~~~  108 (319)
                      ...+..|++.++|..|++++.            .|.+.+    +|+.+.....   . .        -.|+++.+  .++
T Consensus        34 ~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~----~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~d  109 (340)
T d1v04a_          34 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILL----MDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  109 (340)
T ss_dssp             CSCCCEEEECTTSEEEEEECCCC--------CCCCEEEE----EETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTT
T ss_pred             CCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEE----EecCCCCCcceEEEecCCCCCCcceeccceeEEEcCC
Confidence            346888999999987777531            378888    6654322111   1 0        25788766  445


Q ss_pred             Cc--EEEEc--CCCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----------------C
Q psy13998        109 NS--IVVAD--SSNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----------------N  165 (319)
Q Consensus       109 g~--~~~~~--~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----------------~  165 (319)
                      |.  +++..  ....+|.+|+  .++..+.......  ......|+++++..+|.+|++...                 .
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~--~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~  187 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR--HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW  187 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC--CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecC--CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence            64  44543  2445677776  4444332221111  233467899999999999999531                 1


Q ss_pred             CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCC--EEEEeCCCCCCc
Q psy13998        166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGR--VITSFGSEGSEE  242 (319)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~  242 (319)
                      +.+..|+...         ....      ......|+|+++++++ .+|++....++|++|+.++.  ......     .
T Consensus       188 g~v~~~~~~~---------~~~~------~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~-----~  247 (340)
T d1v04a_         188 SFVTYYSPND---------VRVV------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV-----L  247 (340)
T ss_dssp             EEEEEECSSC---------EEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-----E
T ss_pred             eeEEEEcCCc---------eEEE------cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEE-----e
Confidence            2333343321         1111      1234679999999987 57888888999999986432  211110     1


Q ss_pred             ccccCcceEEEcC-CCcEEEEeCCC--------------CE-EEEEc---CCCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998        243 GQLKFPRGVAVDD-QGYISVGDSGN--------------NR-IQIFT---PDGQFLRAFGCWGSGDGEFKGLEGVAVMSN  303 (319)
Q Consensus       243 ~~~~~~~~i~~~~-~g~~~v~~~~~--------------~~-i~~~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (319)
                      .-...|..+.+++ +|.+|+++...              .. +++..   .+++....+..    .+..-.-.+++.-.+
T Consensus       248 ~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~----~G~~~~~~T~a~~~~  323 (340)
T d1v04a_         248 SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAE----NGTVLQGSTVAAVYK  323 (340)
T ss_dssp             ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEE----CSSSSCSEEEEEEET
T ss_pred             cCCCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeC----CCcEeeceEEEEEEC
Confidence            1123478899986 57888886421              11 22222   23344333322    122222233445557


Q ss_pred             CcEEEEeCCCCeE
Q psy13998        304 GNILVCDRENHRI  316 (319)
Q Consensus       304 g~~~v~~~~~~~i  316 (319)
                      |++|+.+-.+..|
T Consensus       324 g~L~iGs~~~~~l  336 (340)
T d1v04a_         324 GKLLIGTVFHKAL  336 (340)
T ss_dssp             TEEEEEESSSCEE
T ss_pred             CEEEEEeeeCCce
Confidence            8899887666554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.79  E-value=1.6e-06  Score=70.54  Aligned_cols=103  Identities=9%  Similarity=0.013  Sum_probs=64.2

Q ss_pred             cCCCCcceEEcCCCcEEEEeC---------CCCeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCCCeE
Q psy13998         54 CFTWPRGIAVGPDNSIVVADS---------SNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSNHRV  121 (319)
Q Consensus        54 ~~~~~~~v~~~~~g~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i  121 (319)
                      +...+.++.|+|||+.++..+         .++.+.+    |++.++....   +-.....+.|+|||+.++.. .++.+
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l----~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI----YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE----EETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEE----EECCCCcccccccCCccccccccccCcceeeEe-ecccc
Confidence            345688999999999766553         3467778    8887665432   22245778999999865554 35678


Q ss_pred             EEEcC-CCcEEEEecCCCccC-------------CCCCCceeEEEeCCCeEEEEe
Q psy13998        122 QVFQS-DGTFVGKFGSMGNKA-------------GQLEHPHYIAVSNTNRVIVSD  162 (319)
Q Consensus       122 ~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~g~~~~~~  162 (319)
                      ++++. .++..... ..+...             .......++.|+|||+.++..
T Consensus       135 ~~~~~~~g~~~~~t-~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         135 YVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             EEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             eEEECCCCceeeee-eccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            99984 44443322 111100             012334667899998776653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.76  E-value=3.7e-06  Score=64.88  Aligned_cols=194  Identities=12%  Similarity=0.231  Sum_probs=110.9

Q ss_pred             CceeeEEcCCCcEEEEcC------------CCCeEEEEcCCC--cEEEEecCCC-ccCCCCCCceeEEEe--CCC--eEE
Q psy13998         99 WPRGIAVGPDNSIVVADS------------SNHRVQVFQSDG--TFVGKFGSMG-NKAGQLEHPHYIAVS--NTN--RVI  159 (319)
Q Consensus        99 ~~~~l~~~~~g~~~~~~~------------~~~~i~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~l~~~--~~g--~~~  159 (319)
                      .+.+|++.++|..|++.+            ..+.|.++|.+.  .....+...+ ......-.|+++.+.  ++|  .++
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            456677777776666542            136788887322  1122221111 111122367888763  455  455


Q ss_pred             EEeC--CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-----------------CC
Q psy13998        160 VSDS--NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----------------NH  220 (319)
Q Consensus       160 ~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-----------------~~  220 (319)
                      +...  ...+|.+|++...     +..+......  .......|+.+++..+|.+|++...                 .+
T Consensus       116 vvnH~~~~~~ieif~~~~~-----~~~l~~~~~v--~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEE-----EKSLLHLKTI--RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             EEECSTTCCEEEEEEEETT-----TTEEEEEEEE--CCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             EEeccCCCceeEEEEEeCC-----CCeEEEEeec--CCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCce
Confidence            5553  4567887776421     1111111111  1234567899999999999999531                 23


Q ss_pred             eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCCCc-eEEeecccCCCCCCCCCcceE
Q psy13998        221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDGQ-FLRAFGCWGSGDGEFKGLEGV  298 (319)
Q Consensus       221 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~~~~~~l  298 (319)
                      .+..|+..  .....      ...+..|++|+++|++ .+||+....++|++|+.++. .+.....    ..-...|..+
T Consensus       189 ~v~~~~~~--~~~~~------~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~----~~l~~~pDNi  256 (340)
T d1v04a_         189 FVTYYSPN--DVRVV------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV----LSFDTLVDNI  256 (340)
T ss_dssp             EEEEECSS--CEEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE----EECSSEEEEE
T ss_pred             eEEEEcCC--ceEEE------cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEE----ecCCCCCCcc
Confidence            45555543  23333      3346789999999997 58999999999999985432 1111100    1123458889


Q ss_pred             EEcc-CCcEEEEeC
Q psy13998        299 AVMS-NGNILVCDR  311 (319)
Q Consensus       299 ~~~~-~g~~~v~~~  311 (319)
                      .+++ +|.++++..
T Consensus       257 ~~d~~~g~lwva~~  270 (340)
T d1v04a_         257 SVDPVTGDLWVGCH  270 (340)
T ss_dssp             EECTTTCCEEEEEE
T ss_pred             EEecCCCEEEEEEC
Confidence            9986 567777753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.69  E-value=7.7e-07  Score=69.11  Aligned_cols=204  Identities=12%  Similarity=0.067  Sum_probs=118.8

Q ss_pred             CcCCCCcceEEcC---CCc-EEEEeCCCCeEEEeccccccccceeeE--Ee---cCceeeEEcCCCc-EEEEc-CCC---
Q psy13998         53 GCFTWPRGIAVGP---DNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--AF---TWPRGIAVGPDNS-IVVAD-SSN---  118 (319)
Q Consensus        53 ~~~~~~~~v~~~~---~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~---~~~~~l~~~~~g~-~~~~~-~~~---  118 (319)
                      |...+| .+++..   ||+ +|+.+..+.+|.+    .++.+.+...  .+   ..++++...++.+ .|+.+ +..   
T Consensus        83 GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAv----Idl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP  157 (459)
T d1fwxa2          83 GDLHHV-HMSFTEGKYDGRFLFMNDKANTRVAR----VRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETP  157 (459)
T ss_dssp             CCBCCE-EEEEETTEEEEEEEEEEETTTTEEEE----EETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEE
T ss_pred             CCcCCC-cccccCCccceeEEEEEcCCCceEEE----EECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccc
Confidence            455666 677764   677 6788889999999    8887666533  33   3667777766543 34432 221   


Q ss_pred             ---------------CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---------------CE
Q psy13998        119 ---------------HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---------------HR  167 (319)
Q Consensus       119 ---------------~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---------------~~  167 (319)
                                     +.+..+| .+.+....+...       ..+..++++++|++.++.+.+               ..
T Consensus       158 ~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~  230 (459)
T d1fwxa2         158 LVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH  230 (459)
T ss_dssp             SSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             cCCCCccccchhhcceEEEEEecCCceEEEEeeeC-------CChhccccCCCCCEEEEEeccccCCcchhhcccccceE
Confidence                           2345667 344444444322       245789999999877664322               12


Q ss_pred             EEEEecCC--------ceeeecCc-eeeeecccCCc----CCCCCCceeEEEcCCCcEE-EEeCCCCeEEEEeCC-----
Q psy13998        168 VQIFDVNG--------RVFQSDGT-FVGKFGSMGNK----AGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVN-----  228 (319)
Q Consensus       168 i~~~~~~~--------~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-v~~~~~~~i~~~~~~-----  228 (319)
                      +.+++...        +.....+. .+......+..    ......|+++.++|||+++ +++..+..+.++|.+     
T Consensus       231 i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~  310 (459)
T d1fwxa2         231 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV  310 (459)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhh
Confidence            44444321        00001110 01000000000    1113568999999999655 555568899999964     


Q ss_pred             --CC-----EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998        229 --GR-----VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP  274 (319)
Q Consensus       229 --~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~  274 (319)
                        ..     .+...      ......|..-+|+.+|+.|.+-.-+..|..|+.
T Consensus       311 ~~~~~~~~~~~~~e------~elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         311 FYENADPRSAVVAE------PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             HHSCC-GGGGEEEC------CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             hcccCCccccEEee------cccCcCccccccCCCceEEEEeeccceEEEEec
Confidence              11     01110      112235788899999999999999999999994

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.54  E-value=2.9e-06  Score=68.23  Aligned_cols=157  Identities=11%  Similarity=0.142  Sum_probs=92.0

Q ss_pred             CCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC----CcEEEEeCC
Q psy13998        143 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT----NRVIVSDSN  218 (319)
Q Consensus       143 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~v~~~~  218 (319)
                      .+..|.+|++.|+|++||+....++|++++..+...    +.+..+..............+|+++|+    +.+|++-..
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~----~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~  100 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE----eecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEec
Confidence            357899999999999999997789999998765322    111221111111122235578999984    566765320


Q ss_pred             ----------CC--eEEEEeC--CCCEEE----EeCCCCCCcccccCcceEEEcCCCcEEEEeCC---------------
Q psy13998        219 ----------NH--RVQIFDV--NGRVIT----SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG---------------  265 (319)
Q Consensus       219 ----------~~--~i~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~---------------  265 (319)
                                .+  .+..+..  ......    .+....  ......-..|+|++||.+|++.+.               
T Consensus       101 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p--~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~  178 (450)
T d1crua_         101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQA  178 (450)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCT
T ss_pred             CCCCCcccccccceEEEeeecccccccccceEEEeeccc--ccccccccceeEcCCCCEEEEecCCCccccccccccccc
Confidence                      01  2333332  211111    110000  111123468999999999998763               


Q ss_pred             -----------------CCEEEEEcCCCceE-----------EeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998        266 -----------------NNRIQIFTPDGQFL-----------RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR  311 (319)
Q Consensus       266 -----------------~~~i~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~  311 (319)
                                       .++|..++.++...           ..+      ...+..|.+++|+|+|++|+++.
T Consensus       179 ~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~------a~G~RNp~g~~~~p~g~l~~~e~  246 (450)
T d1crua_         179 QHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY------TLGHRNPQGLAFTPNGKLLQSEQ  246 (450)
T ss_dssp             TCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE------EBCCSEEEEEEECTTSCEEEEEE
T ss_pred             ccCcccccccccccccccCceEEeeccccccccccccccccceEE------Eeccccccceeecccceeeeccc
Confidence                             26777777665431           111      12456799999999999998864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=9.7e-07  Score=71.89  Aligned_cols=149  Identities=12%  Similarity=0.017  Sum_probs=91.9

Q ss_pred             eeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC---------C
Q psy13998        148 HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---------N  218 (319)
Q Consensus       148 ~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---------~  218 (319)
                      ..+.+.+++.++...  ++.+.+||..+..      ....+.. .....+...+.++.++|||+.++...         .
T Consensus        20 ~~~~W~~d~~~~~~~--~~~~~~~~~~t~~------~~~~~~~-~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~   90 (470)
T d2bgra1          20 YSLRWISDHEYLYKQ--ENNILVFNAEYGN------SSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (470)
T ss_dssp             CCCEECSSSEEEEES--SSCEEEEETTTCC------EEEEECT-TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cCCEeCCCCEEEEEc--CCcEEEEECCCCC------EEEEEch-hhhhhccCccceeEECCCCCEEEEEECCcceeeecc
Confidence            567788888876654  5679999988642      2111111 11123344567899999998665442         2


Q ss_pred             CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCC---------
Q psy13998        219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSG---------  288 (319)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~---------  288 (319)
                      .+.+++||..+.....+      ..+......+.|+|||+.++.. .++.+++++.. |+..+........         
T Consensus        91 ~~~~~l~d~~~~~~~~l------~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~  163 (470)
T d2bgra1          91 TASYDIYDLNKRQLITE------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW  163 (470)
T ss_dssp             EEEEEEEETTTTEECCS------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred             CceEEEEECCCCccccc------ccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccce
Confidence            46788999877666555      3333456788999999866654 45789999954 4433322110000         


Q ss_pred             ---CCCCCCcceEEEccCCcEEEEeCC
Q psy13998        289 ---DGEFKGLEGVAVMSNGNILVCDRE  312 (319)
Q Consensus       289 ---~~~~~~~~~l~~~~~g~~~v~~~~  312 (319)
                         ........++.|+|||+.++....
T Consensus       164 ~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         164 VYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             eeeeeecCCccccEECCCCCccceeEe
Confidence               012234567889999997776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=0.00036  Score=51.53  Aligned_cols=209  Identities=13%  Similarity=0.088  Sum_probs=104.1

Q ss_pred             CCcceEEcCCCcEEEEe-CCC--CeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEc-CCC--CeEEEEc-C
Q psy13998         57 WPRGIAVGPDNSIVVAD-SSN--HRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVAD-SSN--HRVQVFQ-S  126 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~-~~~--~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~-~~~--~~i~~~~-~  126 (319)
                      .+..-+|+|||+.++-. ...  ..+.+    .+........   .........++|+|+.++.. ...  ..+..+. .
T Consensus        40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          40 PLMSPAWSPDGSKLAYVTFESGRSALVI----QTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEE----EETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             ceeeeEECCCCCEEEEEEeeccCcceee----eecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence            34577999999965433 222  23444    3443333222   22355678899999755432 222  2233333 2


Q ss_pred             CCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998        127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY  203 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (319)
                      .........       .........+.+++ .++++...++  .+...+..+...       ...      .........
T Consensus       116 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-------~~~------~~~~~~~~~  175 (269)
T d2hqsa1         116 SGQIRQVTD-------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------QRI------TWEGSQNQD  175 (269)
T ss_dssp             TCCEEECCC-------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------EEC------CCSSSEEEE
T ss_pred             cccceeeee-------ccccccccccccccccceecccccCCceEeeeecccccc-------eee------ecccccccc
Confidence            222222221       11122333445544 3444443333  566666554211       111      111222344


Q ss_pred             EEEcCCCcEEEEeC-C--CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-Ee--CCCCEEEEEcCCCc
Q psy13998        204 IAVSNTNRVIVSDS-N--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GD--SGNNRIQIFTPDGQ  277 (319)
Q Consensus       204 ~~~~~~g~~~v~~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~--~~~~~i~~~~~~g~  277 (319)
                      ..++|+++.++... .  ...+.+++..+........       ........|+|||+.++ +.  .....|++++.+|.
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-------TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-------SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEeec-------CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            67888886554433 2  2356666665554444321       11234568999997443 22  34567899998887


Q ss_pred             eEEeecccCCCCCCCCCcceEEEcc
Q psy13998        278 FLRAFGCWGSGDGEFKGLEGVAVMS  302 (319)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~  302 (319)
                      ....+      ......+...+|+|
T Consensus       249 ~~~~l------t~~~g~~~~p~WSP  267 (269)
T d2hqsa1         249 FKARL------PATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEEC------CCSSSEEEEEEECC
T ss_pred             CEEEE------eCCCCcEEeEEeCC
Confidence            77666      23333455667776

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.00  E-value=0.0016  Score=50.49  Aligned_cols=189  Identities=12%  Similarity=0.098  Sum_probs=100.5

Q ss_pred             EEEEcCCCCeEEEEc-CCCcEEEEecCCCc------------------------------------cCCCCCCceeEEEe
Q psy13998        111 IVVADSSNHRVQVFQ-SDGTFVGKFGSMGN------------------------------------KAGQLEHPHYIAVS  153 (319)
Q Consensus       111 ~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~l~~~  153 (319)
                      .|.+++..|.|+++- ++.+.++.+.....                                    ..+..+.| .+.+.
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~T   93 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFT   93 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEE
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-ccccc
Confidence            355666778888887 77777766543210                                    01222334 45554


Q ss_pred             C---CCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEe-CCC--------
Q psy13998        154 N---TNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSD-SNN--------  219 (319)
Q Consensus       154 ~---~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~-~~~--------  219 (319)
                      .   ||++ |+.+..+++|.+.|++.....      ....     ......+.++...+++ ..||.+ +..        
T Consensus        94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~------kIi~-----iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg  162 (459)
T d1fwxa2          94 EGKYDGRFLFMNDKANTRVARVRCDVMKCD------AILE-----IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  162 (459)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEE------EEEE-----CSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             CCccceeEEEEEcCCCceEEEEECcceeee------EEEe-----cCCCCCCceeecccCCCeEEEEccCccccccCCCC
Confidence            3   5655 667778999999999864321      1111     1223456677765543 223332 211        


Q ss_pred             ----------CeEEEEeCCCC-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC---------------CEEEEEc
Q psy13998        220 ----------HRVQIFDVNGR-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN---------------NRIQIFT  273 (319)
Q Consensus       220 ----------~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~---------------~~i~~~~  273 (319)
                                +.+..+|.+.. ...++..       ...+..++++++|++.++.+.+               ..+.+++
T Consensus       163 ~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n  235 (459)
T d1fwxa2         163 TNMEDVANYVNVFTAVDADKWEVAWQVLV-------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFN  235 (459)
T ss_dssp             SSTTCGG-EEEEEEEEETTTTEEEEEEEE-------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEE
T ss_pred             ccccchhhcceEEEEEecCCceEEEEeee-------CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEec
Confidence                      23556776543 3333311       1246789999999866654321               1344444


Q ss_pred             C--------CCceE-----Eeeccc---CCC----CCCCCCcceEEEccCCc-EEEEeCCCCeEEe
Q psy13998        274 P--------DGQFL-----RAFGCW---GSG----DGEFKGLEGVAVMSNGN-ILVCDRENHRIQV  318 (319)
Q Consensus       274 ~--------~g~~~-----~~~~~~---~~~----~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v  318 (319)
                      .        +|+..     ..+...   +..    -.....|.++.++|||+ +++++..+..+.|
T Consensus       236 ~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSV  301 (459)
T d1fwxa2         236 IAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTV  301 (459)
T ss_dssp             HHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred             hHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEE
Confidence            1        11110     001000   000    01235689999999999 6677777777765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=0.0016  Score=47.79  Aligned_cols=176  Identities=11%  Similarity=0.031  Sum_probs=86.7

Q ss_pred             ceeeEEcCCCcEEE-EcCC--CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCC--EEEEEec
Q psy13998        100 PRGIAVGPDNSIVV-ADSS--NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNH--RVQIFDV  173 (319)
Q Consensus       100 ~~~l~~~~~g~~~~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~--~i~~~~~  173 (319)
                      ....+|+|||+.++ +...  ...+...+..+.....+.      ..........++|+|+.++... ..+  .+..+..
T Consensus        41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             eeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe------eeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            45678999997544 3222  235666675554444332      1224557788999987655432 222  2222222


Q ss_pred             CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCC--CeEEEEeCCCCEEEEeCCCCCCcccccCcce
Q psy13998        174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRG  250 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (319)
                      ...      .....       ...........+.+++. ++++...+  ..|...+.++......      .........
T Consensus       115 ~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~------~~~~~~~~~  175 (269)
T d2hqsa1         115 ASG------QIRQV-------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI------TWEGSQNQD  175 (269)
T ss_dssp             TTC------CEEEC-------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC------CCSSSEEEE
T ss_pred             ccc------cceee-------eeccccccccccccccccceecccccCCceEeeeecccccceee------ecccccccc
Confidence            111      11110       11111222234444443 34443333  3567777665444443      112223345


Q ss_pred             EEEcCCCcEEEEeC-CC--CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEE
Q psy13998        251 VAVDDQGYISVGDS-GN--NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL  307 (319)
Q Consensus       251 i~~~~~g~~~v~~~-~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  307 (319)
                      ..++|+|+.++..+ ..  ..+.+.+..+......       ..........|+|||+.+
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~p~~SPDG~~i  228 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-------SSTFLDETPSLAPNGTMV  228 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-------CCSSSCEEEEECTTSSEE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEe-------ecCccccceEECCCCCEE
Confidence            67899987544433 22  3555566555444433       122334567899999843

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.93  E-value=0.0011  Score=50.71  Aligned_cols=187  Identities=14%  Similarity=0.350  Sum_probs=100.5

Q ss_pred             CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC----CC--e-E-EEEeCC--CCEEEEEecCCce
Q psy13998        108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN----TN--R-V-IVSDSN--NHRVQIFDVNGRV  177 (319)
Q Consensus       108 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~g--~-~-~~~~~~--~~~i~~~~~~~~~  177 (319)
                      +..++++....+.+++||.+|+.+..+..        ..++.+.+-.    ++  . + +++...  ..+|.+|.++.. 
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~--------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~-  109 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYHT--------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-  109 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECCS--------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT-
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEeccc--------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc-
Confidence            34566665556679999999999987731        3445444331    22  1 2 333333  246777765431 


Q ss_pred             eeecCceeeeeccc-CCcCCCCCCceeEEE--cCC-CcE-EEEeCCCCeEEEEeC----CCC----EEEEeCCCCCCccc
Q psy13998        178 FQSDGTFVGKFGSM-GNKAGQLEHPHYIAV--SNT-NRV-IVSDSNNHRVQIFDV----NGR----VITSFGSEGSEEGQ  244 (319)
Q Consensus       178 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~-g~~-~v~~~~~~~i~~~~~----~~~----~~~~~~~~~~~~~~  244 (319)
                          ...+..+... .........+.++|+  ++. |.+ .++....+.+..|..    ++.    .++.+.       .
T Consensus       110 ----~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-------~  178 (353)
T d1h6la_         110 ----NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-------M  178 (353)
T ss_dssp             ----TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-------C
T ss_pred             ----ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-------C
Confidence                1222222111 111122345778887  553 554 355566788887753    232    333442       1


Q ss_pred             ccCcceEEEcCC-CcEEEEeCCCCEEEEEcC--CC----ceEEeecccCCCCCCCCCcceEEEc--c--CCcEEEEeCCC
Q psy13998        245 LKFPRGVAVDDQ-GYISVGDSGNNRIQIFTP--DG----QFLRAFGCWGSGDGEFKGLEGVAVM--S--NGNILVCDREN  313 (319)
Q Consensus       245 ~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~--~g----~~~~~~~~~~~~~~~~~~~~~l~~~--~--~g~~~v~~~~~  313 (319)
                      ...+.+++++.+ +.+|++.- +..|+.++.  ++    ..+....    .......|.+|++-  +  +|-+++++..+
T Consensus       179 ~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~----g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD----GRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS----SSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             CCccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeeccc----CccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            235678999887 46777754 567777763  21    2222211    01234568888864  2  34577777777


Q ss_pred             CeEEeC
Q psy13998        314 HRIQVF  319 (319)
Q Consensus       314 ~~i~v~  319 (319)
                      ++..+|
T Consensus       254 n~f~vy  259 (353)
T d1h6la_         254 SSYAIY  259 (353)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            777665

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.79  E-value=0.0044  Score=48.16  Aligned_cols=240  Identities=10%  Similarity=0.102  Sum_probs=118.6

Q ss_pred             cceEEcCCCcEEEEeCCC-CeEEEeccccccccceeeEE--ec---CceeeEEcCCCcEEEEcCCC------CeEEEEcC
Q psy13998         59 RGIAVGPDNSIVVADSSN-HRVQVCFPHFDLKTNCVFLA--FT---WPRGIAVGPDNSIVVADSSN------HRVQVFQS  126 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~~---~~~~l~~~~~g~~~~~~~~~------~~i~~~~~  126 (319)
                      .+.++.++|++++.+..+ ..+.+    ||..+......  +.   .-...+..++|++|+.++..      ..+.+||+
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~----yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSL----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEE----EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             eEEEEecCCcEEEeecCCCcceeE----ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecC
Confidence            466788999999987643 68889    77765544331  11   22467777899999887642      36889996


Q ss_pred             CCcEEEEecCCCccCC----C-----CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998        127 DGTFVGKFGSMGNKAG----Q-----LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ  197 (319)
Q Consensus       127 ~~~~~~~~~~~~~~~~----~-----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (319)
                      ....-..+........    +     ...-..+...++|++++.+.....+..++.........+.....   ... ...
T Consensus       155 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~  230 (387)
T d1k3ia3         155 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN---RGV-APD  230 (387)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET---TEE-CCC
T ss_pred             CCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccC---ccc-Ccc
Confidence            5554433322110000    0     00111123345678888777777777777664322111100000   000 000


Q ss_pred             CCCceeEEE-cCCCcEEEEeCCCC--------eEEEEe---CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998        198 LEHPHYIAV-SNTNRVIVSDSNNH--------RVQIFD---VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG  265 (319)
Q Consensus       198 ~~~~~~~~~-~~~g~~~v~~~~~~--------~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~  265 (319)
                      ...-..+.+ ..++++++.+....        ....++   .............. . ....-.+.++.++|++|+.++.
T Consensus       231 ~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~r~~~~~~~~~dg~i~v~GG~  308 (387)
T d1k3ia3         231 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-Y-FARTFHTSVVLPDGSTFITGGQ  308 (387)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-S-SCCBSCEEEECTTSCEEEECCB
T ss_pred             cccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccc-c-cccccceeeeccCCeEEEECCc
Confidence            111122223 34667777765321        222222   11111111110000 0 0111134566688999998874


Q ss_pred             C-----------CEEEEEcCCCceEEeecccCCCCCCCCCcce-EEEccCCcEEEEeCC
Q psy13998        266 N-----------NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG-VAVMSNGNILVCDRE  312 (319)
Q Consensus       266 ~-----------~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~~g~~~v~~~~  312 (319)
                      +           ..+.+||+....-..+...    .....-.+ ..+.+||++|+.++.
T Consensus       309 ~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~----~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         309 RRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SBCCTTCCCSBCCCCEEEEGGGTEEEECCCC----SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ccCccCCCCcEeceEEEEECCCCeEEECCCC----CCcccceEEEEECCCCEEEEEeCC
Confidence            2           2477899755544444211    11111123 345789999988874

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.0044  Score=49.68  Aligned_cols=100  Identities=9%  Similarity=-0.034  Sum_probs=54.2

Q ss_pred             CCcceEEcCCCcEEEEe---------CCCCeEEEeccccccccceeeEE--e----cCceeeEEcCCCcEEEEcCCCCeE
Q psy13998         57 WPRGIAVGPDNSIVVAD---------SSNHRVQVCFPHFDLKTNCVFLA--F----TWPRGIAVGPDNSIVVADSSNHRV  121 (319)
Q Consensus        57 ~~~~v~~~~~g~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~--~----~~~~~l~~~~~g~~~~~~~~~~~i  121 (319)
                      .+....++|||+.++..         +..+.+.+    +++.++....-  .    .......|+|+|+.++-.. ++.|
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i----~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl  136 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL----SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNI  136 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE----EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEE----EEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceE
Confidence            45677899999954443         23466777    77765443221  1    1223477899986433322 4568


Q ss_pred             EEEcC-CCcEEEEecCCCccC-------------CCCCCceeEEEeCCCeEEEEe
Q psy13998        122 QVFQS-DGTFVGKFGSMGNKA-------------GQLEHPHYIAVSNTNRVIVSD  162 (319)
Q Consensus       122 ~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~g~~~~~~  162 (319)
                      ++.+. .+..++.. ..+...             .......++-|+|||+.++..
T Consensus       137 ~~~~~~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         137 YYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             EEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             EEEecCCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            87773 33333322 211100             001223577899999776653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.73  E-value=0.0054  Score=47.61  Aligned_cols=167  Identities=10%  Similarity=0.041  Sum_probs=89.6

Q ss_pred             cceEEcCCCcEEEEeCCC-----C------eEEEeccccccccceeeE--Eec-----CceeeEEcCCCcEEEEcCCC-C
Q psy13998         59 RGIAVGPDNSIVVADSSN-----H------RVQVCFPHFDLKTNCVFL--AFT-----WPRGIAVGPDNSIVVADSSN-H  119 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~-----~------~v~~~~~~~~~~~~~~~~--~~~-----~~~~l~~~~~g~~~~~~~~~-~  119 (319)
                      ...+...+|++++.++.+     +      .+.+    ||+.++....  ...     ...+.++.++|++++.+..+ .
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~----yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~   98 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS----WDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK   98 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEE----ECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEE----EECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCc
Confidence            334455689988876531     1      3667    6766543321  111     22456788899999987644 6


Q ss_pred             eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC------CEEEEEecCCceeeecCceeeee--ccc
Q psy13998        120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVFQSDGTFVGKF--GSM  191 (319)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~--~~~  191 (319)
                      .+.+||.....-.......    ....-...++.++|++|+.++..      ..+.+||+....-..-.......  ...
T Consensus        99 ~~~~yd~~~~~w~~~~~~~----~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~  174 (387)
T d1k3ia3          99 KTSLYDSSSDSWIPGPDMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD  174 (387)
T ss_dssp             CEEEEEGGGTEEEECCCCS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred             ceeEecCccCccccccccc----ccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccc
Confidence            8999996554443332211    11223567778899999987642      45888998764322110000000  000


Q ss_pred             CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEE
Q psy13998        192 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVIT  233 (319)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~  233 (319)
                      .........-..+...++|++++.+...+.+..++.......
T Consensus       175 ~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         175 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             ccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            000000001111233356788887777778888886554433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.52  E-value=0.0082  Score=44.01  Aligned_cols=95  Identities=13%  Similarity=0.146  Sum_probs=49.1

Q ss_pred             EEcCC--CcEEEEeCCCCeEEEeccccccccceeeEE---ecCceeeEEcCCCcEEE-Ec---CCC--CeEEEEcCCCcE
Q psy13998         62 AVGPD--NSIVVADSSNHRVQVCFPHFDLKTNCVFLA---FTWPRGIAVGPDNSIVV-AD---SSN--HRVQVFQSDGTF  130 (319)
Q Consensus        62 ~~~~~--g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~g~~~~-~~---~~~--~~i~~~~~~~~~  130 (319)
                      .++|+  |+.++-. .++.|.+    .++.++....-   .......+|+|||+.++ +.   ...  ..|++++..+..
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~----~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWE----HDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEE----EETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEE-eCCcEEE----EECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            44566  6643322 2345666    56654333221   12346678999997443 32   122  247777866555


Q ss_pred             EEEecCCCc-cCCCCCCceeEEEeCCCeEEEE
Q psy13998        131 VGKFGSMGN-KAGQLEHPHYIAVSNTNRVIVS  161 (319)
Q Consensus       131 ~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~  161 (319)
                      ...+..... ...........+++|+|+.++.
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEE
Confidence            555432211 1111123467789999876554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.25  E-value=0.013  Score=40.41  Aligned_cols=148  Identities=11%  Similarity=0.153  Sum_probs=71.0

Q ss_pred             CCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEEcCC---CcEE-EEc----CCCCeEEEEcCC--CcEEEEec
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPD---NSIV-VAD----SSNHRVQVFQSD--GTFVGKFG  135 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---g~~~-~~~----~~~~~i~~~~~~--~~~~~~~~  135 (319)
                      +.++++.+...|.+.+    +-+...+...--..|......|.   +.+. +-+    ...+.|++.+..  |+....- 
T Consensus        25 ~d~ll~~~~seG~vni----~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~-   99 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNA----YLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLE-   99 (313)
T ss_dssp             TTEEEEEEEETTEEEE----EEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECT-
T ss_pred             CCcEEEEEeccceEEE----EEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEec-
Confidence            4456677666777777    55543444433334544444443   2222 222    223456777754  5543322 


Q ss_pred             CCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc-CCCCCCceeEEEcCCC--cE
Q psy13998        136 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK-AGQLEHPHYIAVSNTN--RV  212 (319)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g--~~  212 (319)
                      .+     ..-++.+++.+ +.++.+++...+...+|-++|..+.    .+......+.. .-....+.++-+-..+  .+
T Consensus       100 sp-----k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklr----kL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sf  169 (313)
T d2hu7a1         100 AV-----KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLR----ELARLPGFGFVSDIRGDLIAGLGFFGGGRVSL  169 (313)
T ss_dssp             TS-----CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEE----EEEEESSCEEEEEEETTEEEEEEEEETTEEEE
T ss_pred             CC-----ceEEEEEeeec-CceEEEecccCCceEEEEEeCCcee----eeccCCCcceEEeccCCeEEEEeeecCCcceE
Confidence            11     11233444444 4567777777777777776654321    11111100000 0011233444443222  36


Q ss_pred             EEEeCCCCeEEEEeCC
Q psy13998        213 IVSDSNNHRVQIFDVN  228 (319)
Q Consensus       213 ~v~~~~~~~i~~~~~~  228 (319)
                      |+++...|.++++++.
T Consensus       170 F~adl~SG~lri~tpk  185 (313)
T d2hu7a1         170 FTSNLSSGGLRVFDSG  185 (313)
T ss_dssp             EEEETTTEEEEEECCS
T ss_pred             EEEecccCCEEEecCC
Confidence            7777778888888864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.049  Score=43.36  Aligned_cols=105  Identities=9%  Similarity=0.039  Sum_probs=55.7

Q ss_pred             EEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-------cCceeeEEcCCCcEEEEc---------CCCCeEEEEc
Q psy13998         62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-------TWPRGIAVGPDNSIVVAD---------SSNHRVQVFQ  125 (319)
Q Consensus        62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~g~~~~~~---------~~~~~i~~~~  125 (319)
                      .|.+++.++.. ..++.+.+    ++..++....-+       ..+....++||++.++..         +..+.+.++|
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRL----WNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEE----BCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEE----EECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            35556665443 34567888    777655432211       134566799999743332         2345788888


Q ss_pred             CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998        126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG  175 (319)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~  175 (319)
                      ........+...   ......+....|+|+|+.++-.. ++.+.+.+..+
T Consensus        98 ~~~~~~~~l~~~---~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~  143 (465)
T d1xfda1          98 IPHGDPQSLDPP---EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG  143 (465)
T ss_dssp             SSSCCCEECCCT---TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred             ccCCceeeccCc---cCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence            433323333221   11112334567888886544332 45566666543

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.94  E-value=0.012  Score=39.67  Aligned_cols=148  Identities=5%  Similarity=0.020  Sum_probs=83.6

Q ss_pred             CCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee---------eE--EecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998         55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV---------FL--AFTWPRGIAVGPDNSIVVADSSNHRVQV  123 (319)
Q Consensus        55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~  123 (319)
                      +..+.-|+++|+|++|+.-.  +.++.    -...+...         +.  ....-.-+.|+|.|-+|++..  +.++.
T Consensus        39 ~~n~~~i~fsP~G~LyaVr~--~~lY~----Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~--~~LYr  110 (235)
T d1tl2a_          39 WSNFKFLFLSPGGELYGVLN--DKIYK----GTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK--DKLYK  110 (235)
T ss_dssp             CTTCSEEEECTTSCEEEEET--TEEEE----ESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET--TEEEE
T ss_pred             ccceeEEEECCCCcEEEEEC--CeEEE----CCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEecC--cceec
Confidence            57778899999999998754  36666    33322111         11  122446689999998888773  56766


Q ss_pred             Ec-CCCcEE------EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998        124 FQ-SDGTFV------GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG  196 (319)
Q Consensus       124 ~~-~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (319)
                      =. ++....      ..+.     .........+-|+|+|.+|...+.  .+.....-...   ....+......  ...
T Consensus       111 ~~pPtn~~q~W~g~a~~vG-----~~gw~df~~lFFdP~G~LYaV~~~--~l~k~~pP~~~---~d~WL~~st~i--gr~  178 (235)
T d1tl2a_         111 ASPPQSDTDNWIARATEVG-----SGGWSGFKFLFFHPNGYLYAVHGQ--QFYKALPPVSN---QDNWLARATKI--GQG  178 (235)
T ss_dssp             ESCCCSTTCCHHHHSEEEE-----CSSGGGEEEEEECTTSCEEEEETT--EEEEECCCSST---TCCHHHHCEEE--ESS
T ss_pred             CCcCcccchhhhhhhhhhc-----cCCcCceeEEEECCCceEEEEECC--cEEEcCCCCCC---Cchhhhhhhhh--ccC
Confidence            55 322111      1111     223345567889999999988543  46655432110   00111100000  023


Q ss_pred             CCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998        197 QLEHPHYIAVSNTNRVIVSDSNNHRVQI  224 (319)
Q Consensus       197 ~~~~~~~~~~~~~g~~~v~~~~~~~i~~  224 (319)
                      +...++.+.|+|+|+++.+..  +.++.
T Consensus       179 ~w~~~~fi~Fs~dG~L~~v~~--g~~Y~  204 (235)
T d1tl2a_         179 GWDTFKFLFFSSVGTLFGVQG--GKFYE  204 (235)
T ss_dssp             SGGGEEEEEECTTSCEEEEET--TEEEE
T ss_pred             cccCceEEEECCCCcEEEEeC--CeEEe
Confidence            344567899999999987743  44444

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.47  E-value=0.044  Score=36.96  Aligned_cols=146  Identities=10%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEE
Q psy13998        144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ  223 (319)
Q Consensus       144 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~  223 (319)
                      .....-|+++|+|++|+.-.  +.+++=.+.......--....+++     ...-..-.-+-++|+|.+|++..  +.++
T Consensus        39 ~~n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG-----~ggWn~FkflffdP~G~LyaVt~--~~LY  109 (235)
T d1tl2a_          39 WSNFKFLFLSPGGELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIG-----NGGWNQFQFLFFDPNGYLYAVSK--DKLY  109 (235)
T ss_dssp             CTTCSEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHCEEEE-----CSCGGGCSEEEECTTSCEEEEET--TEEE
T ss_pred             ccceeEEEECCCCcEEEEEC--CeEEECCCCCcchHHHHHhhhhcc-----cCcccceEEEEECCCceEEEecC--ccee
Confidence            45667799999999998764  344432221100000000011111     11112234588999999998874  5777


Q ss_pred             EEeC-CCCE------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCc---eE---EeecccCCCC
Q psy13998        224 IFDV-NGRV------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQ---FL---RAFGCWGSGD  289 (319)
Q Consensus       224 ~~~~-~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~---~~---~~~~~~~~~~  289 (319)
                      .=.+ +.+.      ...++     ....+...-|-|+|+|.+|++.+.  .++...+ .+.   .+   ..++     .
T Consensus       110 r~~pPtn~~q~W~g~a~~vG-----~~gw~df~~lFFdP~G~LYaV~~~--~l~k~~pP~~~~d~WL~~st~ig-----r  177 (235)
T d1tl2a_         110 KASPPQSDTDNWIARATEVG-----SGGWSGFKFLFFHPNGYLYAVHGQ--QFYKALPPVSNQDNWLARATKIG-----Q  177 (235)
T ss_dssp             EESCCCSTTCCHHHHSEEEE-----CSSGGGEEEEEECTTSCEEEEETT--EEEEECCCSSTTCCHHHHCEEEE-----S
T ss_pred             cCCcCcccchhhhhhhhhhc-----cCCcCceeEEEECCCceEEEEECC--cEEEcCCCCCCCchhhhhhhhhc-----c
Confidence            7663 3211      11121     122333457889999999999553  5777773 221   11   1122     2


Q ss_pred             CCCCCcceEEEccCCcEEEEe
Q psy13998        290 GEFKGLEGVAVMSNGNILVCD  310 (319)
Q Consensus       290 ~~~~~~~~l~~~~~g~~~v~~  310 (319)
                      .+...+.-+.|+|||+++...
T Consensus       178 ~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         178 GGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             SSGGGEEEEEECTTSCEEEEE
T ss_pred             CcccCceEEEECCCCcEEEEe
Confidence            445567789999999987764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.46  E-value=0.0059  Score=44.84  Aligned_cols=98  Identities=7%  Similarity=0.044  Sum_probs=54.6

Q ss_pred             EEcCC--CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-EeC---CC--CEEEEEcCCC
Q psy13998        205 AVSNT--NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GDS---GN--NRIQIFTPDG  276 (319)
Q Consensus       205 ~~~~~--g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~~---~~--~~i~~~~~~g  276 (319)
                      .++|+  |+.++-. .++.|+++|.++...+.+.      .........+|+|||+.++ +..   ..  ..|++++..+
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt------~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIV------SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEE------CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEe------cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            34566  6543322 2457999998766666652      2222346678999997444 321   11  2477888666


Q ss_pred             ceEEeecccCCC-CCCCCCcceEEEccCCcEEEE
Q psy13998        277 QFLRAFGCWGSG-DGEFKGLEGVAVMSNGNILVC  309 (319)
Q Consensus       277 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~v~  309 (319)
                      .....+...... ..........+++|||+.++.
T Consensus        78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             CceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence            555544211100 111234567889999985543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.34  E-value=0.13  Score=38.87  Aligned_cols=198  Identities=13%  Similarity=0.279  Sum_probs=101.7

Q ss_pred             cEEEEeCCCCeEEEeccccccccceeeEEec--Cceee------EEcCCCc-EEE-EcCC--CCeEEEEc--CCCcEEEE
Q psy13998         68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--WPRGI------AVGPDNS-IVV-ADSS--NHRVQVFQ--SDGTFVGK  133 (319)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~l------~~~~~g~-~~~-~~~~--~~~i~~~~--~~~~~~~~  133 (319)
                      .+++.....+-|++    |++. ++.+..+.  .++.+      .+..... +++ +...  ..+|.+|.  .....+..
T Consensus        41 SlI~gTdK~~Gl~v----YdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          41 SKLITTNKKSGLAV----YSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             CEEEEEETTSCCEE----EETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cEEEEEcCcCCEEE----EcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            34444444555888    8874 33333222  33333      3322222 323 3332  23566665  34444554


Q ss_pred             ecCCCcc-CCCCCCceeEEE--eC-CCeEE-EEeCCCCEEEEEecCCce-eeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998        134 FGSMGNK-AGQLEHPHYIAV--SN-TNRVI-VSDSNNHRVQIFDVNGRV-FQSDGTFVGKFGSMGNKAGQLEHPHYIAVS  207 (319)
Q Consensus       134 ~~~~~~~-~~~~~~~~~l~~--~~-~g~~~-~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (319)
                      +...... ......+.++|+  ++ +|.++ +....++.+..|.+.... -....+.++.+..       ...+.+++++
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-------~~q~EGCVvD  188 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-------NSQTEGMAAD  188 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-------SSCEEEEEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-------CCccceEEEe
Confidence            4322111 122345788888  55 45544 455567888877552100 0011133444422       2356788998


Q ss_pred             CC-CcEEEEeCCCCeEEEEeCC--C----CEEEEeCCCCCCcccccCcceEEEcC----CCcEEEEeCCCCEEEEEcCCC
Q psy13998        208 NT-NRVIVSDSNNHRVQIFDVN--G----RVITSFGSEGSEEGQLKFPRGVAVDD----QGYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       208 ~~-g~~~v~~~~~~~i~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~~~v~~~~~~~i~~~~~~g  276 (319)
                      .+ +.+|++.. +..|+.++.+  .    ..+....  +  .....-|.+|++-.    +|.++++..++++..+|+..+
T Consensus       189 de~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~--g--~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         189 DEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD--G--RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             TTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS--S--SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             CCCCcEEEecC-ccceEEEEeccCCCccceeeeccc--C--ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            76 46777655 5567888743  1    1221211  0  11234577887642    356788888899999999654


Q ss_pred             --ceEEee
Q psy13998        277 --QFLRAF  282 (319)
Q Consensus       277 --~~~~~~  282 (319)
                        +.+..+
T Consensus       264 ~~~~~g~F  271 (353)
T d1h6la_         264 QNKYVADF  271 (353)
T ss_dssp             TCCEEEEE
T ss_pred             CccccceE
Confidence              555554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.19  E-value=0.24  Score=40.39  Aligned_cols=47  Identities=15%  Similarity=0.157  Sum_probs=31.4

Q ss_pred             CcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998        257 GYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       257 g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v  308 (319)
                      +.+++++..|+.++.|| .+|+.+.++....   .....|  +.+..||+.|+
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~---~~~a~P--~ty~~dGkqYi  522 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPS---GGIGSP--MTYSFKGKQYI  522 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSS---CCCSCC--EEEEETTEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCC---Cceecc--eEEEECCEEEE
Confidence            44556688999999999 6899998874321   111222  56666888554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.68  E-value=0.39  Score=33.06  Aligned_cols=173  Identities=13%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             CCeEEEeccccccccceeeEEecCce-----eeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecC-CCcc---CCCCCC
Q psy13998         76 NHRVQVCFPHFDLKTNCVFLAFTWPR-----GIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGS-MGNK---AGQLEH  146 (319)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~---~~~~~~  146 (319)
                      -+.+.+    .++...+.-.++..|.     +++.+ +.++.++++......+|-.+|..++.+.. ++-.   .-....
T Consensus        81 ~Hai~~----~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~  155 (313)
T d2hu7a1          81 QHALFK----VNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDL  155 (313)
T ss_dssp             CEEEEE----EETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTE
T ss_pred             eeeEEE----EccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCe
Confidence            356666    5665334444444443     44443 34566777666777777744433333321 1100   000122


Q ss_pred             ceeEEEeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC---CCe
Q psy13998        147 PHYIAVSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---NHR  221 (319)
Q Consensus       147 ~~~l~~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---~~~  221 (319)
                      +.++.+...+  .+|+++-..|.+++++...      |.+-.                 ..+.+..+. +++..   ...
T Consensus       156 I~G~g~~~g~~~sfF~adl~SG~lri~tpke------GS~~~-----------------ay~~~gnKV-~sdyEt~gEsy  211 (313)
T d2hu7a1         156 IAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE------GSFSS-----------------ASISPGMKV-TAGLETAREAR  211 (313)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEECCSS------EEEEE-----------------EEECTTSCE-EEEEEESSCEE
T ss_pred             EEEEeeecCCcceEEEEecccCCEEEecCCC------Ccccc-----------------eeEccCcee-eeccCCCCceE
Confidence            3344443322  3566666678888887652      12211                 122232222 33321   222


Q ss_pred             EEEEeCCCCEEEEeCCCCCCcccccCcceEE---EcCCCcEEEEeCCCCEEEEEcCCCceE
Q psy13998        222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVA---VDDQGYISVGDSGNNRIQIFTPDGQFL  279 (319)
Q Consensus       222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~g~~~v~~~~~~~i~~~~~~g~~~  279 (319)
                      ..-+|+.......+..+.. .-....|..|.   .+|++++++.+-.+|+=.+|. +|+.+
T Consensus       212 wit~D~~s~~yerve~P~k-d~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~-nGk~i  270 (313)
T d2hu7a1         212 LVTVDPRDGSVEDLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI-DGERV  270 (313)
T ss_dssp             EEEECTTTCCEEECCCSSC-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE-TTEEE
T ss_pred             EEEEecccCceeeeecCcc-cceeecceEEEeeeeCCCCcEEEEEecCCchheee-cceEe
Confidence            2345654333333321111 11122355555   899999988888889888887 34444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.13  E-value=1.2  Score=36.38  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=32.6

Q ss_pred             CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998        256 QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV  308 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v  308 (319)
                      .|.+++.+..|+.++.|| .+|+.+.++....   .....|  |.+..||+.||
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~---~~~a~P--~tY~~dGkQYv  531 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS---GAIGYP--MTYTHKGTQYV  531 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSS---CCCSCC--EEEEETTEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCC---CcccCC--eEEEECCEEEE
Confidence            456666789999999999 6899998875322   222233  55566887444

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=93.30  E-value=1.3  Score=34.18  Aligned_cols=166  Identities=10%  Similarity=0.030  Sum_probs=76.8

Q ss_pred             CCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC--cEEEEeCC--
Q psy13998        144 LEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSDSN--  218 (319)
Q Consensus       144 ~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~v~~~~--  218 (319)
                      -..+.+|+++|. .++++++...+-|.+-.-.|..      ...................+|+++|.+  .+|+....  
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~t------W~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~   84 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSK------WIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV   84 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTE------EEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCc------eEECCCCCCCCCcccccEeEEEECCCCCCEEEEEecccc
Confidence            356789999994 3444444444555544333321      111100000001122345679999864  45554321  


Q ss_pred             ---CCeEEEEeCCCCEEEEeCCCCC---CcccccCcceEEEcCCC--cEEEEeCCCCEEEEEcCCCceEEeecccCCCCC
Q psy13998        219 ---NHRVQIFDVNGRVITSFGSEGS---EEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDG  290 (319)
Q Consensus       219 ---~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~g--~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~  290 (319)
                         .+.|++=.-.|+.-..+.....   ..........|+++|..  .+|++ ..++.|+.-...|+.-..+........
T Consensus        85 ~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~S~D~G~tW~~~~~~~~~~~  163 (427)
T d2ebsa1          85 GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWKSSDRAKTWTNVTSIPDAFT  163 (427)
T ss_dssp             TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEEESSTTSSCEECTTSSCCCC
T ss_pred             CCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceeeecCCCceeeecccCccccc
Confidence               2334433334554444321111   01112234568999864  45555 444556554445554443322111122


Q ss_pred             CCCCcceEEEccCC--cEEEEeCCCCeE
Q psy13998        291 EFKGLEGVAVMSNG--NILVCDRENHRI  316 (319)
Q Consensus       291 ~~~~~~~l~~~~~g--~~~v~~~~~~~i  316 (319)
                      ....+..+.++|..  .+|++....+.|
T Consensus       164 ~~~~~~~i~~~p~~~~~~y~~~~~~~gi  191 (427)
T d2ebsa1         164 NGIGYTSVIFDPERNGTIYASATAPQGM  191 (427)
T ss_dssp             SSSCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred             CCccceEEEecccccceeeeeeeecccc
Confidence            23346678888753  377666554444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.44  E-value=0.91  Score=36.90  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             CeEEEeccccccccceeeEEec--Cc-eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEE
Q psy13998         77 HRVQVCFPHFDLKTNCVFLAFT--WP-RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAV  152 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (319)
                      +.+..    +|+.+++..-...  .| .+=.+.-.|.+++++..++.++.|| .+|+.+.++....   +....|  +.+
T Consensus       457 G~l~A----iD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~---~~~~~P--~ty  527 (573)
T d1kb0a2         457 GRLLA----WDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT---GVVAAP--STY  527 (573)
T ss_dssp             EEEEE----EETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS---CCCSCC--EEE
T ss_pred             ccEEE----eCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC---CccccC--EEE
Confidence            35666    7777666554332  22 1222333566777788899999999 8999999887653   222333  445


Q ss_pred             eCCCeEEEE
Q psy13998        153 SNTNRVIVS  161 (319)
Q Consensus       153 ~~~g~~~~~  161 (319)
                      ..+|+.|++
T Consensus       528 ~~~GkQYv~  536 (573)
T d1kb0a2         528 MVDGRQYVS  536 (573)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEE
Confidence            557887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.52  E-value=2.8  Score=33.78  Aligned_cols=76  Identities=11%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998        220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      +.|.-+|+ +|+.+.+......      ...+. +.-.|.+++++..++.++.|| .+|+.+..+....   .....|  
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~------~~gg~-l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~---~~~~~P--  505 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH------WNGGT-LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS---GIVAAP--  505 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS------CCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS---CCCSCC--
T ss_pred             cceEEEeCCCCeEeeeccCCCC------CCCce-eEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC---CccccC--
Confidence            45777885 5666655421110      11122 222345666788999999999 6899998875422   122223  


Q ss_pred             EEEccCCcEE
Q psy13998        298 VAVMSNGNIL  307 (319)
Q Consensus       298 l~~~~~g~~~  307 (319)
                      +.+..||+.|
T Consensus       506 ~ty~~dGkqy  515 (560)
T d1kv9a2         506 MTFELAGRQY  515 (560)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCEEE
Confidence            5566688744

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.42  E-value=3  Score=33.93  Aligned_cols=104  Identities=18%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             CCcEEEEeCCCCeEEEecccccc-ccceeeEEec---------------CceeeEEcCC----CcEEEEcCCCCeEEEEc
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDL-KTNCVFLAFT---------------WPRGIAVGPD----NSIVVADSSNHRVQVFQ  125 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~---------------~~~~l~~~~~----g~~~~~~~~~~~i~~~~  125 (319)
                      +|.+|++.+..+.+..    .+. ++++.+-++.               .-.++++.++    +.+++....++.++.+|
T Consensus        62 ~g~ly~~t~~~~~v~a----~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Ald  137 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFA----LGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN  137 (596)
T ss_dssp             TTEEEEECSTTTCEEE----EETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred             CCEEEEeeCCCCcEEE----EeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeec
Confidence            5677776665555655    554 3454444332               0145666443    23556667789999999


Q ss_pred             -CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----CCCEEEEEecCC
Q psy13998        126 -SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----NNHRVQIFDVNG  175 (319)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----~~~~i~~~~~~~  175 (319)
                       .+|+.+..+............ ..-.+. ++.+++..+     ..+.|..||..+
T Consensus       138 a~tG~~~w~~~~~d~~~~~~~t-~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~T  191 (596)
T d1w6sa_         138 AETGETVWKVENSDIKVGSTLT-IAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKT  191 (596)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCC-SCCEEE-TTEEEECCBCGGGTCCCEEEEEETTT
T ss_pred             cccCceeccccccccccccccc-cCCcEE-CCeEEEeeccccccccCceEEEECCC
Confidence             789988877432111110000 111111 455555432     247899999874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.86  E-value=0.83  Score=37.24  Aligned_cols=76  Identities=13%  Similarity=0.212  Sum_probs=46.7

Q ss_pred             CeEEEeccccccccceeeEEec--Cc-eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEE
Q psy13998         77 HRVQVCFPHFDLKTNCVFLAFT--WP-RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAV  152 (319)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (319)
                      +.+..    +|+.+++..-...  .| .+-.+...+.++++++.++.++.|| .+|+++.++.....   ....|  +++
T Consensus       466 G~l~A----iD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~---~~~~P--~ty  536 (582)
T d1flga_         466 GSLRA----MDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG---IVSPP--ITW  536 (582)
T ss_dssp             EEEEE----ECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---CCSCC--EEE
T ss_pred             CeEEE----EcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC---ccccC--EEE
Confidence            45666    6666665544333  11 1112223455666788899999999 89999999876532   22333  566


Q ss_pred             eCCCeEEEE
Q psy13998        153 SNTNRVIVS  161 (319)
Q Consensus       153 ~~~g~~~~~  161 (319)
                      ..+|+.|++
T Consensus       537 ~~~G~qYv~  545 (582)
T d1flga_         537 EQDGEQYLG  545 (582)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEE
Confidence            668877654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.60  E-value=4.2  Score=32.70  Aligned_cols=48  Identities=10%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE
Q psy13998        209 TNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV  261 (319)
Q Consensus       209 ~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v  261 (319)
                      .+.+++++..++.++.|| .+|+.+.++.....   ....|  +.+.-+|+.||
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~---~~~~P--~ty~~dGkqyv  516 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG---IVAAP--MTFELAGRQYV  516 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---CCSCC--EEEEETTEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCC---ccccC--EEEEECCEEEE
Confidence            455666788899999999 58999888754321   22233  44445675443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.45  E-value=4.4  Score=32.69  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=56.3

Q ss_pred             CCcEEEEeCCCCeEEEecccccc-ccceeeEEec---------------CceeeEEcCCCcEEEEcCCCCeEEEEc-CCC
Q psy13998         66 DNSIVVADSSNHRVQVCFPHFDL-KTNCVFLAFT---------------WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDG  128 (319)
Q Consensus        66 ~g~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~---------------~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~  128 (319)
                      +|.+|++.+.++.|..    +|. ++++.+-++.               ...++++. ++++|+. ..++.++..| .+|
T Consensus        62 ~g~vyv~t~~~~~v~A----lda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~-~~~g~l~alda~tG  135 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYA----LNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKK-QANGHLLALDAKTG  135 (571)
T ss_dssp             TTEEEEECSTTTCEEE----EETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEE-CTTSEEEEEETTTC
T ss_pred             CCEEEEecCCCCeEEE----EeCCCCCceEEEecCCCCcccccccccCcCCCcceee-CCeEEEE-eCCCcEEeeehhhh
Confidence            5777777655566777    665 3455444332               11345554 3556654 5678899999 788


Q ss_pred             cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----CCCEEEEEecCC
Q psy13998        129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----NNHRVQIFDVNG  175 (319)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----~~~~i~~~~~~~  175 (319)
                      +.+............  ..+.--+-.++.+++..+     ..+.|..+|..+
T Consensus       136 ~~~w~~~~~~~~~~~--~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~T  185 (571)
T d2ad6a1         136 KINWEVEVCDPKVGS--TLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKT  185 (571)
T ss_dssp             CEEEEEECCCGGGTC--BCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTT
T ss_pred             hhhcccccccccccc--ceeecCeEeCCeEEEeeccccccccCcEEEEECCC
Confidence            887766432211111  111111112466666543     357889998874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.97  E-value=3.1  Score=30.31  Aligned_cols=204  Identities=13%  Similarity=0.225  Sum_probs=105.6

Q ss_pred             cceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeE---EcCCCcEEEEcCCCCeEEEEcCCC--cEEEE
Q psy13998         59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIA---VGPDNSIVVADSSNHRVQVFQSDG--TFVGK  133 (319)
Q Consensus        59 ~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~g~~~~~~~~~~~i~~~~~~~--~~~~~  133 (319)
                      .+.-.+|..++++.-+ ...+.+    ||+++..++..+..+..+.   |-.+..+-+..  +..|+-|+.+|  .+.+.
T Consensus        66 dsAIMhP~~~IiALra-g~~LQi----FnletK~klks~~~~e~VvfWkWis~~~L~lVT--~taVYHW~~~g~s~P~k~  138 (327)
T d1utca2          66 DSAIMNPASKVIALKA-GKTLQI----FNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKM  138 (327)
T ss_dssp             SEEEECSSSSEEEEEE-TTEEEE----EETTTTEEEEEEECSSCCCEEEESSSSEEEEEC--SSEEEEEESSSSCCCEEE
T ss_pred             hhhhcCCCCcEEEEec-CCeEEE----EehhHhhhhceEEcCCCcEEEEecCCCEEEEEc--CCceEEEcccCCCCchhh
Confidence            3455678878776654 568999    9999998888766555543   33344443332  45799999644  45555


Q ss_pred             ecCCCccCCCCCCceeEEEeCCCeEEEEeC---CC----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998        134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NN----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV  206 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (319)
                      +......  ....+..-..+++.++++..+   .+    |.+.+|..+.+....-......|.... ..+......-+++
T Consensus       139 fdR~~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~-~~g~~~~~~lf~f  215 (327)
T d1utca2         139 FDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK-MEGNAEESTLFCF  215 (327)
T ss_dssp             EECCGGG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEEC-CTTCSSCEEEEEE
T ss_pred             hhhcccc--cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEE-cCCCCCCceEEEE
Confidence            5443322  123445566777777765422   22    456677666432221101111111000 0011111111222


Q ss_pred             cCCCcEEEEeCCCCeEEEEeCC----C-----CEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEc-CC
Q psy13998        207 SNTNRVIVSDSNNHRVQIFDVN----G-----RVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFT-PD  275 (319)
Q Consensus       207 ~~~g~~~v~~~~~~~i~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~-~~  275 (319)
                      ...      +...+++.+.+..    +     +....+.-+  .......|.++.+++.- -+|+. ...|.|++|| .+
T Consensus       216 a~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp--pea~~DFPvamqvs~kygiiyvi-TK~G~i~lyDleT  286 (327)
T d1utca2         216 AVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP--PEAQNDFPVAMQISEKHDVVFLI-TKYGYIHLYDLET  286 (327)
T ss_dssp             EEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCC--TTCTTCCEEEEEEETTTTEEEEE-ETTSEEEEEETTT
T ss_pred             EEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECC--ccccCCcEEEEEeeccCCEEEEE-ecCcEEEEEEccc
Confidence            211      1223567777632    2     111122111  12334678899998874 45555 4679999999 46


Q ss_pred             CceEEe
Q psy13998        276 GQFLRA  281 (319)
Q Consensus       276 g~~~~~  281 (319)
                      |..+..
T Consensus       287 gt~i~~  292 (327)
T d1utca2         287 GTCIYM  292 (327)
T ss_dssp             CCEEEE
T ss_pred             ccEEEE
Confidence            666544

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=88.45  E-value=4.2  Score=31.17  Aligned_cols=172  Identities=13%  Similarity=0.099  Sum_probs=77.7

Q ss_pred             CceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCC-CccCCCCCCceeEEEeCCC--eEEEEeCC-----CCEEE
Q psy13998         99 WPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVSNTN--RVIVSDSN-----NHRVQ  169 (319)
Q Consensus        99 ~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~g--~~~~~~~~-----~~~i~  169 (319)
                      .+.+|+++|.. ++++++...+.|++-+-.|+.-..+... .........+.+|+++|..  .+|+....     .+.|.
T Consensus        13 ~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~gi~   92 (427)
T d2ebsa1          13 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFY   92 (427)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEE
T ss_pred             cEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCccEE
Confidence            46789999875 4444444445566554444443333211 1111123456789999853  45554321     12232


Q ss_pred             EEecCCceeeecCceeeeecc--cCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998        170 IFDVNGRVFQSDGTFVGKFGS--MGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLK  246 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  246 (319)
                      +=.=.|+      ........  .............++++|.+ ..++++..++.|++-.-.|+.-..+...........
T Consensus        93 ~S~DgG~------TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~  166 (427)
T d2ebsa1          93 VSEDRGQ------SFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGI  166 (427)
T ss_dssp             EESSTTS------EEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEEESSTTSSCEECTTSSCCCCSSS
T ss_pred             EeCCCCc------cceeecCCcccCccccCccceeEEEECCCccCcccccccccceeeecCCCceeeecccCcccccCCc
Confidence            1111111      11111000  00001111233458898854 333334444456553334444333322111111222


Q ss_pred             CcceEEEcCC--CcEEEEeCCCCEEEEEcCCC
Q psy13998        247 FPRGVAVDDQ--GYISVGDSGNNRIQIFTPDG  276 (319)
Q Consensus       247 ~~~~i~~~~~--g~~~v~~~~~~~i~~~~~~g  276 (319)
                      ....+.++|.  +.+|++....+.|++-...|
T Consensus       167 ~~~~i~~~p~~~~~~y~~~~~~~giy~S~DgG  198 (427)
T d2ebsa1         167 GYTSVIFDPERNGTIYASATAPQGMYVTHDGG  198 (427)
T ss_dssp             CEEEEEECTTSTTCEEEEESSTTCEEEESSTT
T ss_pred             cceEEEecccccceeeeeeeecccceeccCCC
Confidence            3456888876  35777777666676544334

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.86  E-value=6.6  Score=31.64  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEE
Q psy13998        256 QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL  307 (319)
Q Consensus       256 ~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~  307 (319)
                      .|.+++++..|+.++.|| .+|+.+..+....   +....|  +.+..||+.|
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~---~~~~~P--~ty~~~GkQY  534 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGT---GVVAAP--STYMVDGRQY  534 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSS---CCCSCC--EEEEETTEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCC---CccccC--EEEEECCEEE
Confidence            456777888999999999 6899998875322   112223  5555688744

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.55  E-value=8.7  Score=30.96  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=45.2

Q ss_pred             CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998        220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG  297 (319)
Q Consensus       220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  297 (319)
                      +.|.-+|+ +|+.+.+.....      ....+. +...|.+++++..|+.++.|| .+|+.+..+.....   ....|  
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~------p~~~g~-lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~---~~~~P--  533 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL------PLWAGV-LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG---IVSPP--  533 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSCC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---CCSCC--
T ss_pred             CeEEEEcCCCCcEEeecCCCC------CCccce-eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC---ccccC--
Confidence            46777774 566665552111      111111 223455666789999999999 68999988854221   12223  


Q ss_pred             EEEccCCcEE
Q psy13998        298 VAVMSNGNIL  307 (319)
Q Consensus       298 l~~~~~g~~~  307 (319)
                      |.+..||+.|
T Consensus       534 ~ty~~~G~qY  543 (582)
T d1flga_         534 ITWEQDGEQY  543 (582)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCEEE
Confidence            6677789744