Psyllid ID: psy14013

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790--
MHRSIGKRIRMDDPIPPEYDTNPMTPMTEGGDIQEPFTPYTPYSNHAQTPLHNPIHFRNREITIIVHNIFVRQNLFQKKTIAATHYQVDLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKLTAPLPSSRQKNEDWQPLELYKTSLLHGESDSVSAATKKNYSRKNKKDMEEEHEELDIDNLSLDDNDFA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHccccccccccccc
cccccccEEEccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHHcccccccccccccHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccEEcHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHcccEEEccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHEEccccccccccccccccHHHHHHHHHHcHHHHHHcccccccccHHHcc
mhrsigkrirmddpippeydtnpmtpmteggdiqepftpytpysnhaqtplhnpihfrnreITIIVHNIFVRQNLFQKKTIAATHYqvdltstpYQVRLIMLVDEWIEQYKSHKESALLSLMQFFIngsgcrgkitsNMANNMEHAAIIRKMTEEfdeesgeyplimaGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVfalqplyasedlkGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKlfvpddefanvhtkggkrrlkntpLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLlleepnpkyneeplddrqetSLIELMVCCVRQaatgdapvgrgpnrrIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKltnllslpqyfdlniyttsRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCceenasiftrcdVQRRTLIEKTIVDKYTESLDDWNnsleagvkpdddetFNLVSSLKKIATFYschnmgqwnvWDTAYKTILEaqsnspkappqeAVQYCMRACYFSLLWDLHHCEelaqsgagtAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNrkltaplpssrqknedwqplELYKTSLlhgesdsvsaatkknysrkNKKDMEEEHeeldidnlslddndfa
mhrsigkrirmddpippeyDTNPMTPMTEGGDIQEPFTPYTPYSNHAQTPLHNPIHFRNREITIIVHNIFVRQNLFQKKTIAATHyqvdltstpYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSvnldntqrqyeserqktrdkrasdrleslmtkrqELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDefanvhtkggkrrlkntpLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQaatgdapvgrgpnrRIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLtnllslpqyfdLNIYTTSRREKDLDELLKKLQKivdkhndteVLETCAKTLETLcceenasiftrcdvqrrTLIEKTIVDKYTESLDDWNNSleagvkpdddETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKLtaplpssrqknedwQPLELYKTSllhgesdsvsaatkknysrknkkdmeeeheeldidnlslddndfa
MHRSIGKRIRMDDPIPPEYDTNPMTPMTEGGDIQEPFTPYTPYSNHAQTPLHNPIHFRNREITIIVHNIFVRQNLFQKKTIAATHYQVDLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHtatlaamklmtalVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRRekdldellkklqkIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKLTAPLPSSRQKNEDWQPLELYKTSLLHGESDSVSAATKKNYSRKNKKDMEEEHEEldidnlslddndFA
**********************************************AQTPLHNPIHFRNREITIIVHNIFVRQNLFQKKTIAATHYQVDLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLD**************************************IKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLL******************SLIELMVCCVRQAA*****************************LTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILE************AVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEY*****HLNFL************************************************************************
******************************************************************************************TSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQR******************ESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEF*****************IRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPN**********RQETSLIELMVCCVRQ********************************TEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESL*****************TFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEA******APPQEAVQYCMRACYFSLLWDLHH*****************AETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKL*****************ELYKTSLLHGESDS*************************************
MHRSIGKRIRMDDPIPPEYDTNPMTPMTEGGDIQEPFTPYTPYSNHAQTPLHNPIHFRNREITIIVHNIFVRQNLFQKKTIAATHYQVDLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNT*****************DRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASM**********QRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQ*********EAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKLTAPLPSSRQKNEDWQPLELYKTSLLHG****************************DIDNLSLDDNDFA
******KRIRMDDPIPPEYDTNP**********QE*FTPYTPYSNHAQTPLHNP************H*I**************THYQVDLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEEL*****GTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKLTAPLP******EDWQPLELYKTSLLHGE****************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHRSIGKRIRMDDPIPPEYDTNPMTPMTEGGDIQEPFTPYTPYSNHAQTPLHNPIHFRNREITIIVHNIFVRQNLFQKKTIAATHYQVDLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKLTAPLPSSRQKNEDWQPLELYKTSLLHGESDSVSAATKKNYSRKNxxxxxxxxxxxxxxxxxxxxxDFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query792 2.2.26 [Sep-21-2011]
Q8WVM7 1258 Cohesin subunit SA-1 OS=H yes N/A 0.698 0.439 0.481 1e-161
Q9D3E6 1258 Cohesin subunit SA-1 OS=M yes N/A 0.698 0.439 0.481 1e-161
O35638 1231 Cohesin subunit SA-2 OS=M no N/A 0.707 0.454 0.468 1e-159
Q8N3U4 1231 Cohesin subunit SA-2 OS=H no N/A 0.707 0.454 0.466 1e-159
Q9DGN0 1194 Cohesin subunit SA-2 OS=X N/A N/A 0.712 0.472 0.451 1e-151
Q9DGN1 1265 Cohesin subunit SA-1 OS=X N/A N/A 0.698 0.437 0.459 1e-150
Q9UJ98 1225 Cohesin subunit SA-3 OS=H no N/A 0.693 0.448 0.405 1e-128
Q99M76 1256 Cohesin subunit SA-3 OS=R no N/A 0.700 0.441 0.389 1e-116
O70576 1240 Cohesin subunit SA-3 OS=M no N/A 0.731 0.466 0.377 1e-115
Q8TBR4150 STAG3-like protein 4 OS=H no N/A 0.152 0.806 0.595 2e-34
>sp|Q8WVM7|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3 Back     alignment and function desciption
 Score =  568 bits (1465), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 318/660 (48%), Positives = 420/660 (63%), Gaps = 107/660 (16%)

Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
           +VD+WIE YK  ++ ALL L+ FFI  SGCRG +   M  NM++A IIRKMTEEFDE+SG
Sbjct: 101 VVDDWIESYKQDRDIALLDLINFFIQCSGCRGTVRIEMFRNMQNAEIIRKMTEEFDEDSG 160

Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
           +YPL M G QWKKFRSNFC+F+  L++QCQYSIIYD+Y+MD VISLLTGLSDSQVRAFRH
Sbjct: 161 DYPLTMPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRH 220

Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELE-- 279
           T+TLAAMKLMTALV+VAL +S++ DNTQRQYE+ER K   KRA++RLE L+ KR+EL+  
Sbjct: 221 TSTLAAMKLMTALVNVALNLSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQEN 280

Query: 280 ----ENM-----------------DEIKNM---------------------LTYM----- 292
               ENM                  EI+ +                     L Y+     
Sbjct: 281 QDEIENMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLH 340

Query: 293 -------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
                   K + ALQ LY + +L  KLELFT++FKDRIV+MTLDKEYDVAV A+RLV  I
Sbjct: 341 DRQGEVRLKCLKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLI 400

Query: 346 L------------------------------------KLFVPDDEFANVHTKGGKRRLKN 369
           L                                    KLF   D  A       KRR +N
Sbjct: 401 LHGSEEALSNEDCENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQAEEAL--AKRRGRN 458

Query: 370 TP---LIRDLVQFFIESELHEHGAYLVDSLIESN-EMMKDWECMTDLLLEEPNPKYNEEP 425
           +P   LIR LV FF+ESELHEH AYLVDSL ES+ E++KDWECMT+LLLEEP     EE 
Sbjct: 459 SPNGNLIRMLVLFFLESELHEHAAYLVDSLWESSQELLKDWECMTELLLEEP--VQGEEA 516

Query: 426 LDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLP 485
           + DRQE++LIELMVC +RQAA    PVGRG  +R+ + KE K   DD+ +LTEHFI  LP
Sbjct: 517 MSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFIITLP 576

Query: 486 QLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETC 545
            LL KY AD +K+ NLL +PQYFDL IY+T R EK LD LLK+++ +V+KH +++VLE C
Sbjct: 577 MLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVESDVLEAC 636

Query: 546 AKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNL 605
           +KT   LC EE  +I  R D+ R  LI++  VD++  S++D    L+ G + DDD+ +N+
Sbjct: 637 SKTYSILCSEE-YTIQNRVDIARSQLIDE-FVDRFNHSVEDL---LQEGEEADDDDIYNV 691

Query: 606 VSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDL 665
           +S+LK++ +F++ H++ +W+++   Y+ +     +   A P++ V   ++  ++S+LW L
Sbjct: 692 LSTLKRLTSFHNAHDLTKWDLFGNCYRLLKTGIEHG--AMPEQIVVQALQCSHYSILWQL 749
Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Homo sapiens (taxid: 9606)
>sp|Q9D3E6|STAG1_MOUSE Cohesin subunit SA-1 OS=Mus musculus GN=Stag1 PE=1 SV=3 Back     alignment and function description
>sp|O35638|STAG2_MOUSE Cohesin subunit SA-2 OS=Mus musculus GN=Stag2 PE=1 SV=3 Back     alignment and function description
>sp|Q8N3U4|STAG2_HUMAN Cohesin subunit SA-2 OS=Homo sapiens GN=STAG2 PE=1 SV=3 Back     alignment and function description
>sp|Q9DGN0|STAG2_XENLA Cohesin subunit SA-2 OS=Xenopus laevis GN=stag2 PE=1 SV=1 Back     alignment and function description
>sp|Q9DGN1|STAG1_XENLA Cohesin subunit SA-1 OS=Xenopus laevis GN=stag1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UJ98|STAG3_HUMAN Cohesin subunit SA-3 OS=Homo sapiens GN=STAG3 PE=1 SV=2 Back     alignment and function description
>sp|Q99M76|STAG3_RAT Cohesin subunit SA-3 OS=Rattus norvegicus GN=Stag3 PE=2 SV=1 Back     alignment and function description
>sp|O70576|STAG3_MOUSE Cohesin subunit SA-3 OS=Mus musculus GN=Stag3 PE=1 SV=2 Back     alignment and function description
>sp|Q8TBR4|STG34_HUMAN STAG3-like protein 4 OS=Homo sapiens GN=STAG3L4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query792
328713366 1309 PREDICTED: cohesin subunit SA-1-like iso 0.775 0.469 0.614 0.0
328713362 1240 PREDICTED: cohesin subunit SA-1-like iso 0.775 0.495 0.614 0.0
350399529 1217 PREDICTED: cohesin subunit SA-1-like [Bo 0.767 0.499 0.610 0.0
383850038 1255 PREDICTED: cohesin subunit SA-1-like [Me 0.875 0.552 0.539 0.0
332017010 1270 Cohesin subunit SA-1 [Acromyrmex echinat 0.753 0.470 0.599 0.0
91083057 1124 PREDICTED: similar to stromal antigen [T 0.873 0.615 0.519 0.0
340721203 1207 PREDICTED: cohesin subunit SA-1-like [Bo 0.767 0.503 0.597 0.0
321477854 1166 stromal antigen-like protein, copy A [Da 0.767 0.521 0.574 0.0
307204260 1262 Cohesin subunit SA-2 [Harpegnathos salta 0.772 0.484 0.591 0.0
380016518 1129 PREDICTED: cohesin subunit SA-2-like [Ap 0.771 0.541 0.597 0.0
>gi|328713366|ref|XP_001950748.2| PREDICTED: cohesin subunit SA-1-like isoform 1 [Acyrthosiphon pisum] gi|328713368|ref|XP_003245053.1| PREDICTED: cohesin subunit SA-1-like isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/710 (61%), Positives = 516/710 (72%), Gaps = 96/710 (13%)

Query: 96  QVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEE 155
           +V L + VD+WIEQYK +++ ALL LMQFFIN +GC+G IT  M+ NMEHAAIIRKMTEE
Sbjct: 237 RVSLQVTVDDWIEQYKINRDEALLVLMQFFINAAGCKGVITPAMSENMEHAAIIRKMTEE 296

Query: 156 FDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQ 215
           FDEESGEYPLIM+G QWKKFRSNFCDFV HLVKQCQYSIIYDQYLMDN+ISLLTGLSDSQ
Sbjct: 297 FDEESGEYPLIMSGIQWKKFRSNFCDFVGHLVKQCQYSIIYDQYLMDNMISLLTGLSDSQ 356

Query: 216 VRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKR 275
           VRAFRHTATLAAMKLMTALVDVAL+VSVNLDNTQRQYE+ERQK RDKRASDRLESLM KR
Sbjct: 357 VRAFRHTATLAAMKLMTALVDVALIVSVNLDNTQRQYEAERQKARDKRASDRLESLMAKR 416

Query: 276 QELE-----------------------ENMDEIKNM---------------------LTY 291
           QELE                       + + EI+ +                     L Y
Sbjct: 417 QELEENMDEIKNMLTYMFKSVFVHRYRDTLPEIRAICMAEIGVWMKKFHQNFLDDSYLKY 476

Query: 292 M------------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAV 339
           +             K + ALQPLYASE+LK KLELFTSKFKDRIVAMTLDKEYDVAV AV
Sbjct: 477 IGWTLHDKVGEVRLKCLQALQPLYASEELKSKLELFTSKFKDRIVAMTLDKEYDVAVQAV 536

Query: 340 RLVISILK------------------------------------LFVPDDEFANVHTKGG 363
           RLVISILK                                    LF P+++   V TK G
Sbjct: 537 RLVISILKHHRDILSDKDCEHVYELVYSSHRAVAQAAGEFLNERLFKPEEDTKTVRTKRG 596

Query: 364 KRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEEPNPKYNE 423
           K+RL NTPLIRDLVQFFIESELHEHGAYLVDSLI+SNEMMKDWECMTDLLLEEP    +E
Sbjct: 597 KKRLPNTPLIRDLVQFFIESELHEHGAYLVDSLIDSNEMMKDWECMTDLLLEEPG--LSE 654

Query: 424 EPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKV 483
           E +DDRQETSLIELMVCC++QAATG+APVGRGPNR++ S+KE+KQVQDDKQRLTEHFIKV
Sbjct: 655 ERMDDRQETSLIELMVCCIKQAATGEAPVGRGPNRKMMSVKEIKQVQDDKQRLTEHFIKV 714

Query: 484 LPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLE 543
           LP L+DKY AD DKL NLLS+PQYFDL+IYTTSR+E +LD LLKK+  + DKH + EVLE
Sbjct: 715 LPPLIDKYRADADKLINLLSIPQYFDLDIYTTSRQESNLDLLLKKIHLVTDKHQNDEVLE 774

Query: 544 TCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETF 603
           TCAKTLE LC + N+++ TRC VQ+ TL++ TI +K+ E++DDWNN +E   KPDDDE +
Sbjct: 775 TCAKTLEILCSKNNSTLATRCSVQKSTLMD-TITNKHREAMDDWNNLIEGNEKPDDDEIY 833

Query: 604 NLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLW 663
           N+V+S+KKI+ FYSCHN+G WN+WD  +K +  A   S K  P+EA++Y + AC F+ +W
Sbjct: 834 NVVNSMKKISIFYSCHNLGPWNLWDIIFKDLKMAHEGS-KPLPEEAIKYSIAACMFATMW 892

Query: 664 DLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEE 713
           +LH  E + ++G    +E+ VA+ K +L  FMD +  +L       +KEE
Sbjct: 893 ELHSIENVLENGRNEDIEEQVAQVKTKLFDFMDVLRGILAHSTNPLFKEE 942

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328713362|ref|XP_003245051.1| PREDICTED: cohesin subunit SA-1-like isoform 2 [Acyrthosiphon pisum] gi|328713364|ref|XP_003245052.1| PREDICTED: cohesin subunit SA-1-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350399529|ref|XP_003485553.1| PREDICTED: cohesin subunit SA-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383850038|ref|XP_003700635.1| PREDICTED: cohesin subunit SA-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332017010|gb|EGI57809.1| Cohesin subunit SA-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|91083057|ref|XP_966898.1| PREDICTED: similar to stromal antigen [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340721203|ref|XP_003399014.1| PREDICTED: cohesin subunit SA-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|321477854|gb|EFX88812.1| stromal antigen-like protein, copy A [Daphnia pulex] Back     alignment and taxonomy information
>gi|307204260|gb|EFN83057.1| Cohesin subunit SA-2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380016518|ref|XP_003692229.1| PREDICTED: cohesin subunit SA-2-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query792
FB|FBgn0020616 1127 SA "Stromalin" [Drosophila mel 0.443 0.311 0.484 3e-192
UNIPROTKB|D4A3Q2 1122 Stag1 "Stromal antigen 1 (Pred 0.477 0.336 0.401 1.8e-153
UNIPROTKB|Q6P275 1221 STAG1 "STAG1 protein" [Homo sa 0.435 0.282 0.422 5.5e-153
UNIPROTKB|F1MC39 1258 STAG1 "Uncharacterized protein 0.435 0.274 0.422 9.1e-153
UNIPROTKB|F1P9C8 1258 STAG1 "Uncharacterized protein 0.435 0.274 0.422 9.1e-153
UNIPROTKB|Q8WVM7 1258 STAG1 "Cohesin subunit SA-1" [ 0.435 0.274 0.422 9.1e-153
RGD|1310744 1258 Stag1 "stromal antigen 1" [Rat 0.435 0.274 0.422 3.9e-152
UNIPROTKB|F1NYY6 1273 STAG1 "Uncharacterized protein 0.435 0.271 0.419 3.9e-152
MGI|MGI:1098658 1258 Stag1 "stromal antigen 1" [Mus 0.435 0.274 0.422 6.3e-152
UNIPROTKB|Q9DGN0 1194 stag2 "Cohesin subunit SA-2" [ 0.448 0.297 0.392 8.3e-147
FB|FBgn0020616 SA "Stromalin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 904 (323.3 bits), Expect = 3.0e-192, Sum P(5) = 3.0e-192
 Identities = 175/361 (48%), Positives = 246/361 (68%)

Query:   346 LKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMKD 405
             ++LF    +     TK GK R+ NTPL+RDLVQFFIESELHEHGAYLVDS I+SN+M++D
Sbjct:   467 VRLFHLTADMEETKTKRGKVRMPNTPLVRDLVQFFIESELHEHGAYLVDSFIDSNDMVRD 526

Query:   406 WECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIA-SMK 464
             WECMTDLLLEEP P  NEE LD++QE++LIE+MV  V+Q+ATG+ PVGR  NR+   S K
Sbjct:   527 WECMTDLLLEEPGP--NEEVLDNKQESTLIEIMVSSVKQSATGEVPVGRASNRKCTLSAK 584

Query:   465 EMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRRXXXXXX 524
             E+K +QD+K +LTEHFI  LP LL+KY AD +KL NLL++PQYFDLN+YTT+R+      
Sbjct:   585 ELKAIQDEKAKLTEHFIVTLPSLLEKYQADSEKLANLLAVPQYFDLNLYTTNRQEGNLQA 644

Query:   525 XXXXXXXIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESL 584
                    ++  H   EVLETCAKTLE LC E +A+ +TRC++ R  +IE   V+KY +++
Sbjct:   645 LLDRINQVMSMHTGREVLETCAKTLECLCAEGSAT-YTRCNIARSNIIESA-VNKYKDAI 702

Query:   585 DDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQS--NSP 642
             ++W N ++    P++D+ +N+  +LK ++  YS HN+  W ++ + ++ + EAQS  N  
Sbjct:   703 EEWRNLIQGEETPNEDDIYNITITLKVLSILYSSHNLNPWELFKSLFQDVEEAQSKENID 762

Query:   643 KAPPQEAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEML 702
             +  P EA+ YC+ ACYFS+ W L + E   +S     V + VAE +  L  FM +  E+ 
Sbjct:   763 RCLPNEALVYCIEACYFSISWGLQYVENECES---VNVTEVVAELRNNLDTFMGACFELT 819

Query:   703 K 703
             +
Sbjct:   820 R 820
GO:0005634 "nucleus" evidence=ISS
GO:0008278 "cohesin complex" evidence=IDA;NAS
GO:0000780 "condensed nuclear chromosome, centromeric region" evidence=IDA
GO:0005721 "centromeric heterochromatin" evidence=IDA
GO:0000922 "spindle pole" evidence=IDA
GO:0016322 "neuron remodeling" evidence=IMP
GO:0035327 "transcriptionally active chromatin" evidence=IDA
UNIPROTKB|D4A3Q2 Stag1 "Stromal antigen 1 (Predicted), isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P275 STAG1 "STAG1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MC39 STAG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9C8 STAG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WVM7 STAG1 "Cohesin subunit SA-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310744 Stag1 "stromal antigen 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYY6 STAG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1098658 Stag1 "stromal antigen 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DGN0 stag2 "Cohesin subunit SA-2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query792
pfam08514118 pfam08514, STAG, STAG domain 2e-53
COG5537740 COG5537, IRR1, Cohesin [Cell division and chromoso 3e-05
>gnl|CDD|219877 pfam08514, STAG, STAG domain Back     alignment and domain information 
 Score =  179 bits (457), Expect = 2e-53
 Identities = 71/120 (59%), Positives = 95/120 (79%), Gaps = 2/120 (1%)

Query: 158 EESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVR 217
           E+SG+YPL+  G + KKFR N C+F++ LV QCQYS++YD  LMDN+IS LT LS SQVR
Sbjct: 1   EDSGDYPLVSKGPKLKKFRENLCEFLSTLVIQCQYSLLYDDNLMDNLISWLTALSSSQVR 60

Query: 218 AFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQE 277
            FRHTATL A+KLMTAL +VAL +S + + TQ+Q E+E++K+RD RA  R++SL +KR+E
Sbjct: 61  PFRHTATLVALKLMTALCNVALELSNSKETTQKQLEAEKKKSRDNRA--RVDSLNSKRKE 118

STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version. Length = 118
>gnl|CDD|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 792
KOG2011|consensus 1048 100.0
PF08514118 STAG: STAG domain ; InterPro: IPR013721 STAG domai 100.0
COG5537740 IRR1 Cohesin [Cell division and chromosome partiti 99.97
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 82.4
>KOG2011|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-106  Score=949.80  Aligned_cols=607  Identities=41%  Similarity=0.679  Sum_probs=559.8

Q ss_pred             cCCCCcc------cccHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCcccCccccCCCchHHHHHHHHHHHhh-ccC
Q psy14013         89 DLTSTPY------QVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDE-ESG  161 (792)
Q Consensus        89 ~~~~~Lf------~~~~~~va~eWie~Y~~d~~~Al~eLINfil~~cGc~~~It~~d~~d~d~~~ii~~l~e~f~e-~s~  161 (792)
                      ...++||      +.+++++|++|++.|++|++.||++||||||+||||+|.||++|++++|+++++..|++.|.+ +++
T Consensus        78 ~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es~  157 (1048)
T KOG2011|consen   78 FDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERESG  157 (1048)
T ss_pred             cChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhhc
Confidence            5568899      777999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             ccCcccCCccchhHHhhHHHHHHHHHHHhcc-CcccchhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy14013        162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQY-SIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALV  240 (792)
Q Consensus       162 eYPLi~k~k~~K~Fr~n~~eF~~~LV~~~~~-~iLyD~~Lm~~l~~wLt~lS~S~vR~FRHTATl~aLkl~taLv~va~~  240 (792)
                      +||++++||.||+||.+||+|+..||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||+||.+
T Consensus       158 DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~  237 (1048)
T KOG2011|consen  158 DYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALN  237 (1048)
T ss_pred             cCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996 999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------
Q psy14013        241 VSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVF-----------------------  297 (792)
Q Consensus       241 l~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF~~VF-----------------------  297 (792)
                      |+.+.++++||||+|++|+++||+  |+++|..++.++|+++++|++||++||++||                       
T Consensus       238 Ls~~~~~tskQleaEr~k~r~~ra--rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi  315 (1048)
T KOG2011|consen  238 LSSHNDKTSKQLEAERNKSRGNRA--RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWI  315 (1048)
T ss_pred             HHHhhHHHHHHHHHHhcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHH
Confidence            999999999999999999999876  9999999999999999999999999999999                       


Q ss_pred             ---------------------------------hhhhhccCccchhhHhhHHHHHHHHHhhhccCcchhHHHHHHHHHHH
Q psy14013        298 ---------------------------------ALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVIS  344 (792)
Q Consensus       298 ---------------------------------aL~~Ly~~~d~~~~L~~Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~  344 (792)
                                                       +|.+||+++++.++|++||+|||+|||||| |+|.+|+|.||+|+..
T Consensus       316 ~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~  394 (1048)
T KOG2011|consen  316 KSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLC  394 (1048)
T ss_pred             HhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHH
Confidence                                             999999999999999999999999999999 9999999999999888


Q ss_pred             HHh-----------------ccCCCcccc--ccc------------c-----ccCCCCCCCchHHHHHHHHHhhcccccc
Q psy14013        345 ILK-----------------LFVPDDEFA--NVH------------T-----KGGKRRLKNTPLIRDLVQFFIESELHEH  388 (792)
Q Consensus       345 i~~-----------------lf~~~~~~~--~~~------------~-----~~~~~~~~~~~~i~~Ll~f~~ese~he~  388 (792)
                      ++.                 +|+.++..+  ++.            .     ++.....++.+.+..|+.||+++++|+|
T Consensus       395 ~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~~l~~~  474 (1048)
T KOG2011|consen  395 LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEESELHQH  474 (1048)
T ss_pred             HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhhhhhhh
Confidence            887                 444443222  110            0     1111234566789999999999999999


Q ss_pred             hhHHHHhhcc-cchhhcchHHHHHHHccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-cccHHHh
Q psy14013        389 GAYLVDSLIE-SNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRR-IASMKEM  466 (792)
Q Consensus       389 ~~ylVDsLw~-~~~~lkDWe~m~~~LL~D~~~~~~e~~L~~~qe~iLieIL~asVkqa~~g~~p~gR~~~rk-~~s~ke~  466 (792)
                      ++|+||++|+ ....++||+||..+|+..+.+  +++.+++.+++.|+|+|++++||+++|++|+||+.++| .+|.||.
T Consensus       475 ~~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~--~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~  552 (1048)
T KOG2011|consen  475 AAYLVDSLFDSLDFLLKDWACMTSLLLDKLLP--QGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKED  552 (1048)
T ss_pred             HHHHHHHHHHhhHHHhcccHHHHHhhcccccc--hhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHH
Confidence            9999999999 899999999999999999876  67789999999999999999999999999999995555 6899999


Q ss_pred             hhhhhhHHHHHHHHHHhhHHHHHHhccCHHHHHhhhccccccChhhhcccchhhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy14013        467 KQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCA  546 (792)
Q Consensus       467 k~~~e~~~~lT~~li~~LP~LL~Ky~ad~e~v~~LL~ip~~~dLe~y~~~r~e~~l~~LL~~I~~~f~~Hsd~~VL~~~a  546 (792)
                      +...+++.++|.++++.+|+|+.||.+|.+++++|+.||+||+++.|+..|++.+|.+++.++..++.+|.+.+|+++|+
T Consensus       553 ~~~~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~  632 (1048)
T KOG2011|consen  553 ADLEEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCD  632 (1048)
T ss_pred             HHHHHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhHHHHHHHHHHHHHHHhccccCCCcch
Q psy14013        547 KTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNV  626 (792)
Q Consensus       547 ~al~~l~~~~~~~i~s~~~~~~~eL~d~~l~~~~~~~l~~~~~l~~~~~~~~ed~~~~l~~~L~RL~~l~s~~dls~w~l  626 (792)
                      .++.++|.++. +....+...+.++.+ ...+.++..++.+.....     ++++.++++++++|+++|++.+++..|++
T Consensus       633 ~~~~~l~~~el-s~~~~~di~r~~~~d-l~~~~~~~il~~f~~~~~-----~~~~~~~~l~~lk~~~~~q~~~~~~~~~l  705 (1048)
T KOG2011|consen  633 KPYEFLCYEEL-SKITDKDIERSNLYD-LFDTKYDKILDIFLLFIR-----DEDDEYAVLSRLKRLASFQNSIDLLKWDL  705 (1048)
T ss_pred             chHHHHhhHHH-hhhHHHHHHHhhhhH-hHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999988 788889999999999 999999999999875432     67889999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHhcccccchhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy14013        627 WDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEH  706 (792)
Q Consensus       627 ~d~~~~iL~~~~~rg~~~l~~E~v~~al~~~~~~l~W~l~~l~~~~~~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~~~~  706 (792)
                      |+.++..+..... +  ..|..++..+++++++.+.|.+..+..     +..+.++.+..|+++.+.|+..|..+++. .
T Consensus       706 ~~~l~~~l~e~~~-~--d~~~~~~l~~~~~~~~~~~~~~~~i~~-----~~~~~~e~l~~f~~~~~~~~~l~~~~~~~-~  776 (1048)
T KOG2011|consen  706 FKALAESLHERIN-R--DPQRCIILFKLQLLGNKLTYDLVKIKN-----GEVCGAEFLSELRSRSDSMFNLVDEYLEE-V  776 (1048)
T ss_pred             HHHHHHHhhhhhc-c--CchhhHHHHHHHHhhhhhhhhhhhhcc-----CCCccHHHHHHHHHHhHHHHHHHHHHHHh-h
Confidence            9999998887743 3  688899999999999999999998885     15667899999999999999999999987 5


Q ss_pred             chhhhhhhhh
Q psy14013        707 CEEYKEEKGH  716 (792)
Q Consensus       707 ~~~v~~k~~v  716 (792)
                      +.+|+++++.
T Consensus       777 ~~ev~e~~~~  786 (1048)
T KOG2011|consen  777 NMEVEEQAVR  786 (1048)
T ss_pred             hhHHHHHHHH
Confidence            7788888776

>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes Back     alignment and domain information
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query792
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.9 bits (183), Expect = 8e-14
 Identities = 84/562 (14%), Positives = 157/562 (27%), Gaps = 165/562 (29%)

Query: 303 YASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANV---- 358
           Y  +D+   L +F   F            +D      + V  + K  +  +E  ++    
Sbjct: 16  YQYKDI---LSVFEDAFV---------DNFDC-----KDVQDMPKSILSKEEIDHIIMSK 58

Query: 359 HTKGGKRRLKNTPLIR--DLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEE 416
               G  RL  T L +  ++VQ F+E  L  +  +L+  +       +    MT + +E+
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQ 115

Query: 417 PNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEM-KQV------ 469
            +  YN+  +  +   S ++     +RQA     P     N  I  +    K        
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVC 171

Query: 470 QDDKQRLTEHF----IKVLPQLLDKYVADHDKLTNLLSLPQYFDLN-------IYTTSRR 518
              K +    F    + +         +    L  L  L    D N             R
Sbjct: 172 LSYKVQCKMDFKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 519 EKDLDELLKKLQK---------IVDKHNDTEVLET----CAKTLETLCCEENASIFTRCD 565
              +   L++L K         ++    + +        C K L T        +     
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLT---TRFKQVTDFLS 282

Query: 566 VQRRTLIEKTIVDKYTESLDDWNNSLE-----AGVKPDD-----DETFNLVSSLKKIATF 615
               T I    +D ++ +L   +            +P D       T     S+  IA  
Sbjct: 283 AATTTHIS---LDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAES 336

Query: 616 YSCHNMGQWNVWDT-AYKTILEAQSNSPKA-PPQEAVQYCMRACY-----F--------- 659
                +  W+ W       +     +S     P E      R  +     F         
Sbjct: 337 IR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMFDRLSVFPPSAHIPTI 390

Query: 660 --SLLWD------------------------------LH--HCEELAQSGAGTAVEDAVA 685
             SL+W                               +   + E   +     A+  ++ 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 686 ETKGRLLRFMDSMEE----------------MLKLEHCEEYKE-EKGHLN--FLNRKL-- 724
           +    + +  DS +                 +  +EH E         L+  FL +K+  
Sbjct: 451 D-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 725 -TAPLPSSRQKNEDWQPLELYK 745
            +    +S       Q L+ YK
Sbjct: 510 DSTAWNASGSILNTLQQLKFYK 531
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00