Psyllid ID: psy14047

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MEATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccccccccccEEEEHHHHHHHHHcccEEEcccccccHHHHHHHHccccEEEEccccccccccccccccccEEEHHHHHcccEEEEccccHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHccccEEccccccccccccEEEccccccccccccccHHHHHHHccccEEEEEccEEEEEccccccccccccEEEEEEEcccccEEEEEEEEccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccEEEEEccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcccccccccccccccEEEHHHHHHHHHcccEEEEEcccccHHHHHHHHHHccEEEEccccccccccHcccEEEEEEEcccHHHHHHHccccccHHHHHHHHHHccEEEEcccccccccccHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHccccccEEEEEEEEEEEccEEccccccccccccccHHHHHHHHHcccEEEEEEEEEEHHHHHHcHHHHHHEEEEEEEEccccEEEEEEEEccccEEEEcccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcHHHcccEEccccccccEEEEEEEc
Coil and Loop (DISEMBL)
meaterpiigiltqepclgvdkhfadfksyipASYVKAVeasgarvapifignpEAYYRKILGQVngvlipgggasfyaddgyAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVngvlipgggasfyaddgyAKAGAMIYKIAKEFnenrdyfpimGICLGFQLLLytsnnenelrtrCDCFYENLALEFMPSFRqsllysrapiHVLQELATshithnwhmwcitpsnftdnglAKEWKVLSTnsnnrglkfissvehkvypfagiqfhpeknayewkltqdnphtriAIENARYFFDWLVsqasgshhsfetEEEEKAALIYNycpeytayipgigydqtylfk
Flexible Loop (DISEMBL)
meaterpiigiltqepclGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK
Low Complexity Region (SEG)
MEATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK
Disordered region (IsUnstruct)
*******IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA*************KAALIYNYCPEYTAYIPGIGYDQTYLF*
Disordered Region (DISOPRED)
**ATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHH*****EEEKAALIYNYCPEYTAYIPGIGYDQTYLFK
Disordered Region (DISEMBL)
MEATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS***********EKAALIYNYCPEYTAYIPGIGYDQTYLFK
Disordered Region (DISPRO)
****ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q62867	317	Gamma-glutamyl hydrolase	yes	N/A	0.82	0.905	0.323	1e-42
Q9Z0L8	317	Gamma-glutamyl hydrolase	yes	N/A	0.817	0.902	0.327	2e-41
A7YWG4	318	Gamma-glutamyl hydrolase	yes	N/A	0.665	0.732	0.368	2e-36
Q54HL4	347	Gamma-glutamyl hydrolase	yes	N/A	0.782	0.789	0.312	1e-35
Q92820	318	Gamma-glutamyl hydrolase	yes	N/A	0.822	0.905	0.300	1e-35
Q54LN4	317	Gamma-glutamyl hydrolase	no	N/A	0.817	0.902	0.316	2e-34
O65355	347	Gamma-glutamyl hydrolase	no	N/A	0.808	0.815	0.295	2e-30
P93164	342	Gamma-glutamyl hydrolase	no	N/A	0.814	0.833	0.28	3e-24
A0Q6C0	516	GMP synthase [glutamine-h	yes	N/A	0.368	0.25	0.245	2e-05
A4IXW6	516	GMP synthase [glutamine-h	yes	N/A	0.368	0.25	0.239	0.0001

>sp|Q62867|GGH_RAT Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=Ggh PE=1 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 169/349 (48%), Gaps = 62/349 (17%)

Query: 2   EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61
             ++RPIIGI+ QE C G       F  YI ASYVK +E++GARV PI +   +A Y   
Sbjct: 29  RGSKRPIIGIIMQE-CYGNMTKLGRF--YIAASYVKFIESAGARVVPIRLDLNDAQY--- 82

Query: 62  LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
                                                             E +   +NGV
Sbjct: 83  --------------------------------------------------ETLFRSINGV 92

Query: 122 LIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT 181
           L+PGGGA+     GY++   + +  A E  +N DYFP+ G CLG + L    +N+N L T
Sbjct: 93  LLPGGGANL-THSGYSRVAKIFFTKALESFDNGDYFPVWGTCLGLEELSVLVSNDN-LLT 150

Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLA 240
             +     L L F    +QS ++   P  +L  LA+ ++T N+H W ++  NFT+N  L 
Sbjct: 151 LTNTSSVKLPLNFTRDSKQSRMFRNLPEELLNSLASENLTANFHKWSLSVKNFTENEKLK 210

Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
           K + +L+ N++ +  +FISS+E   YP   +Q+HPEK  +EWK  +   H   A++ + Y
Sbjct: 211 KFFNILTVNTDGKT-EFISSMEGYKYPIYAVQWHPEKAPFEWKKLRGISHAPNAVKTSFY 269

Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
              + +S+A  + H FE E EE  +LIY +CP YT  I    + Q Y+F
Sbjct: 270 LAKFFISEALKNDHHFENELEETESLIYQFCPVYTGNIS--SFQQAYMF 316

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates. Exhibits either endo- or exopeptidase activity depending upon the tissue of origin. When secreted, it acts primarily as an endopeptidase.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 9

>sp|Q9Z0L8|GGH_MOUSE Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE=1 SV=2

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 172/348 (49%), Gaps = 62/348 (17%)

Query: 3   ATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKIL 62
            +ERPIIG++ QE C G      ++  YI ASYVK +E+                     
Sbjct: 30  GSERPIIGVVMQE-CFGKMAKLGNY--YIAASYVKYIES--------------------- 65

Query: 63  GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVL 122
                                  AGA +  I  ++S  E          E++   +NGVL
Sbjct: 66  -----------------------AGARVVPIRPDLSDAEY---------EELFRSINGVL 93

Query: 123 IPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTR 182
           +PGGGA+   D GY++   + +  A E  +N D+FP+ G CLGF+ L    + EN L T 
Sbjct: 94  LPGGGANL-TDSGYSRVAKIFFSKALESFDNGDHFPVWGTCLGFEELSVLVSGEN-LLTS 151

Query: 183 CDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLAK 241
            D   + L L F    R+S ++   P  +L  LA  ++T N+H W ++  NFT+N  L K
Sbjct: 152 TDTKSKKLPLNFTEGARKSRMFKHFPTELLDSLALENLTANFHKWSLSVKNFTENEKLKK 211

Query: 242 EWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYF 301
            + +L+TN++ +  +FISS+E   YP   +Q+HPEK A+EWK      H   A++ + Y 
Sbjct: 212 FFNILTTNTDGK-TEFISSMEGFKYPVYAVQWHPEKAAFEWKNLGGISHAPNAVKTSFYL 270

Query: 302 FDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
            ++LVS+A  + H FE   +E A+LIY + P YT  I    + Q Y+F
Sbjct: 271 AEFLVSEARKNSHHFENVVKETASLIYKFNPIYTGNIS--SFQQAYMF 316

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates. Acts as endopeptidase. Lysosomal enzyme is activated by sulfhydryl compounds.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|A7YWG4|GGH_BOVIN Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 130/239 (54%), Gaps = 6/239 (2%)

Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIA-KEFNENRDYFPIMGICLGFQLLL 170
           EK+   +NGVL PGG  +     GYA+   M Y ++ K F E  DYFP+ G CLGF+ L+
Sbjct: 84  EKLFKSINGVLFPGGSVNL-MRSGYARVAKMFYNLSIKSFGEG-DYFPVWGTCLGFEELI 141

Query: 171 YTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCIT 230
           Y  + E+ L T  D     L L F     QS ++   P  +L  LA   +T ++H W ++
Sbjct: 142 YLVSGES-LLTLTDTVGIKLPLNFSRGTLQSRMFQNFPADLLLSLAVEPLTAHFHKWSLS 200

Query: 231 PSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPH 290
             NFT N   K +  + T + +  + FIS++E   YP  G+Q+HPEK  YEW   +   H
Sbjct: 201 VMNFTKNEKLKAFFSILTTNTDGNIDFISTMEGYRYPIYGVQWHPEKAPYEWGQLRGISH 260

Query: 291 TRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
              A++ A Y  ++ V++A  S+H FE++ EE  ALIY Y P YT  +    + Q+Y+F
Sbjct: 261 APNAVKAAFYLAEFFVAEARKSNHHFESDVEETKALIYQYRPTYTGNVS--SFQQSYIF 317

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates. Exhibits either endo- or exopeptidase activity depending upon the tissue of origin. When secreted, it acts primarily as an endopeptidase.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|Q54HL4|GGHB_DICDI Gamma-glutamyl hydrolase B OS=Dictyostelium discoideum GN=gghB PE=3 SV=1

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 155/330 (46%), Gaps = 56/330 (16%)

Query: 7   PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVN 66
           P+IGILTQ     ++  + D  +Y+ ASYVK VE++GARV PIF                
Sbjct: 27  PVIGILTQPFPSSINIKYGD--NYLMASYVKYVESAGARVVPIF---------------- 68

Query: 67  GVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGG 126
                     +  DD                        +SL  I K   Q+NG+L+PGG
Sbjct: 69  ----------YNQDD------------------------ESLTTIFK---QINGILLPGG 91

Query: 127 GASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCF 186
              F  +  Y K   +I+    + N N DYFP+ G CLG + ++       ++ T  +  
Sbjct: 92  DVDFKTEIQYVKTLTLIWDYVLDVNINGDYFPLWGTCLGLEEIVSLQAESFDVLTDFNAE 151

Query: 187 YENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE-WKV 245
             ++ L F     +S +    P +++  LA   IT N H + I+P+ F +N L  + + V
Sbjct: 152 NYSIPLNFSNIALESKIMKNCPTNIINSLANDPITMNNHHFGISPNTFDNNSLLNQFFNV 211

Query: 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWL 305
           L+TN++  G +FIS +E K YP   I +HPEK+ Y W       H+  AI   +Y  ++ 
Sbjct: 212 LATNNDKSGNEFISLIESKDYPIYAIIWHPEKSPYSWYSKDATDHSFNAILACQYMSNFF 271

Query: 306 VSQASGSHHSFETEEEEKAALIYNYCPEYT 335
           V++   S+H F  EE    +LIYNY P YT
Sbjct: 272 VNETRKSNHKFNDEEVLFKSLIYNYNPTYT 301

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|Q92820|GGH_HUMAN Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 167/349 (47%), Gaps = 61/349 (17%)

Query: 2   EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61
           +  ++PIIGIL Q+    V K++  +  YI ASYVK +E+                    
Sbjct: 29  DTAKKPIIGILMQKCRNKVMKNYGRY--YIAASYVKYLES-------------------- 66

Query: 62  LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
                                   AGA +  +  +++ ++ +I         +   +NG+
Sbjct: 67  ------------------------AGARVVPVRLDLTEKDYEI---------LFKSINGI 93

Query: 122 LIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT 181
           L PGG       D YAK   + Y ++ +  ++ DYFP+ G CLGF+ L    + E  L T
Sbjct: 94  LFPGGSVDLRRSD-YAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLT 151

Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLA 240
             D     + L F      S ++   P  +L  LA   +T N+H W ++  NFT N  L 
Sbjct: 152 ATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLK 211

Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
           K + VL+TN++ + ++FIS++E   YP  G+Q+HPEK  YEWK      H   A++ A Y
Sbjct: 212 KFFNVLTTNTDGK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFY 270

Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             ++ V++A  ++H F++E EE+ ALIY + P YT  I    + Q Y+F
Sbjct: 271 LAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS--SFQQCYIF 317

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|Q54LN4|GGHA_DICDI Gamma-glutamyl hydrolase A OS=Dictyostelium discoideum GN=gghA PE=3 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 159/348 (45%), Gaps = 62/348 (17%)

Query: 6   RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQV 65
           RPIIGILTQ P  G    F     YI ASYVK +E+                        
Sbjct: 29  RPIIGILTQ-PTDGDMTTFG--SQYIAASYVKYIES------------------------ 61

Query: 66  NGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPG 125
                               AGA +  I  ++  + L          +++G +NGV  PG
Sbjct: 62  --------------------AGARVVPILYDIDIKSL---------TELMGSINGVFFPG 92

Query: 126 GGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ-LLLYTSNNENELRTRCD 184
           GG  F     Y      I+    EFN N DYFP+ G C+GFQ L L +++N N L +   
Sbjct: 93  GGVDFNNQTVYTDTIQSIWSQVVEFNNNGDYFPLWGTCMGFQELALLSADNFNLLSSYNS 152

Query: 185 CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD-NGLAKEW 243
             Y  + L F      S L+S A   ++Q LA+  IT N H + ++P  +   + +   +
Sbjct: 153 ENYT-VPLNFTSLAAGSRLFSLASSSIMQSLASEPITMNNHQFGLSPQTYQQTSSINTFF 211

Query: 244 KVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFD 303
            VLSTN +  G  FIS++E K YP  G Q+HPEK  +EW   +   H+  +I   +Y  +
Sbjct: 212 DVLSTNVDRDGNTFISTIEAKNYPIYGTQWHPEKPIFEWWDQEVMNHSFDSIMANQYTSN 271

Query: 304 WLVSQASGSHHSFETEEEEKAALIYNYCPEYT-AYIPGIGYDQTYLFK 350
           + V++   S HSF     E + LIYNY P+Y+ + +P   ++Q Y F 
Sbjct: 272 FFVNECRKSLHSFSDPSVEASTLIYNYTPQYSESTVP--DFEQIYYFN 317

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|O65355|GGH_ARATH Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 172/349 (49%), Gaps = 66/349 (18%)

Query: 6   RPIIGILTQEPCLGVDKHFADFK--SYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG 63
           RP+IGIL+  P  G     ++    S I ASYVK  E+ GAR                  
Sbjct: 53  RPVIGILSH-PGDGASGRLSNATDASSIAASYVKLAESGGAR------------------ 93

Query: 64  QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLI 123
                +IP                 +I+   +E+ +++L++             VNGV++
Sbjct: 94  -----VIP-----------------LIFNEPEEILFQKLEL-------------VNGVIL 118

Query: 124 PGGGASFYADDG-YAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTR 182
            GG    +A +G Y +    I+    E N+  ++FPI  ICLGF+LL    +   ++  +
Sbjct: 119 TGG----WAKEGLYFEIVKKIFNKVLERNDAGEHFPIYAICLGFELLTMIISQNRDIFEK 174

Query: 183 CDCFYENLALEFMPSFR-QSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLA 240
            D      +L+F+ +   Q  ++ R P  +L++L T  +    H + I+P +F  N  L+
Sbjct: 175 MDARNSASSLQFVENVNIQGTIFQRFPPELLKKLGTDCLVMQNHRFGISPQSFEGNIALS 234

Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
             +K+++T  ++ G  ++S+V+   YP  G Q+HPEKNA+EW  +   PH+  AI+  ++
Sbjct: 235 NFFKIVTTCVDDNGKVYVSTVQSTKYPVTGFQWHPEKNAFEWG-SSKIPHSEDAIQVTQH 293

Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             + LVS+A  S +  E+ ++  + LIYNY P Y  Y  GIGYD+ Y+F
Sbjct: 294 AANHLVSEARKSLNRPES-KKVLSNLIYNYKPTYCGY-AGIGYDEVYIF 340

Has endopeptidase activity against 4-amino-10-methylpteroyl penta-, tetra-, tri- and di-gamma-L-glutamate substrates and is responsible for the production of folic acid, pteglu from teroylpolyglutamates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|P93164|GGH_SOYBN Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 156/350 (44%), Gaps = 65/350 (18%)

Query: 6   RPIIGILTQEPCLGVDKHFADFK--SYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG 63
           +P+IGILT  P  G     ++    SYI ASYVK VE+ GARV P               
Sbjct: 53  KPVIGILTH-PGDGASGRLSNATGVSYIAASYVKFVESGGARVIP--------------- 96

Query: 64  QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLI 123
                                    +IY  + E   ++LD+             VNGVL 
Sbjct: 97  -------------------------LIYNESPENLNKKLDL-------------VNGVLF 118

Query: 124 PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT-- 181
            GG A       Y      I+K A E N+  D+FP++   LG  L++   + + ++    
Sbjct: 119 TGGWA---VSGPYLDTLGNIFKKALERNDAGDHFPVIAFNLGGNLVIRIVSEQTDILEPF 175

Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG-LA 240
                  +L L    + + SL + R P  +L +L T  +  + H + I+P     N  L+
Sbjct: 176 TASSLPSSLVLWNEANAKGSL-FQRFPSDLLTQLKTDCLVLHNHRYAISPRKLQYNTKLS 234

Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
             +++L+T+ +  G  F+S+   + YP     + PEKNA+EW  +   PHT  AI   + 
Sbjct: 235 DFFEILATSGDRDGKTFVSTARGRKYPVTVNLWQPEKNAFEWATSLKAPHTEDAIRVTQS 294

Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350
             ++ +S+A  S ++ +  ++ + +LIYNY P +     G GYDQ YLF+
Sbjct: 295 TANFFISEARKSTNTPDA-QKVRDSLIYNYKPTFGG-TAGKGYDQVYLFE 342

Glycine max (taxid: 3847)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|A0Q6C0|GUAA_FRATN GMP synthase [glutamine-hydrolyzing] OS=Francisella tularensis subsp. novicida (strain U112) GN=guaA PE=3 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 38/167 (22%)

Query: 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE 176
           Q  G+++ GG  S Y  D   KA  +++K+           P++GIC G Q ++     E
Sbjct: 49  QAKGIILSGGPESVYDSD--VKAPEIVFKLG---------IPVLGICYGMQTMVMQHGGE 97

Query: 177 NELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT--SHITHNWHMWCITPSNF 234
            +   + +                   + +A I++L       S++ H   +W       
Sbjct: 98  VKGADQSE-------------------FGKAIINILNSTNNIFSNMEHEQLVWMSHSDKV 138

Query: 235 TDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYE 281
           T  G   E    STN+       +++V HK  PF G+QFHPE    E
Sbjct: 139 TQTGEHFEIIASSTNAP------VAAVAHKSKPFFGVQFHPETTHTE 179

Catalyzes the synthesis of GMP from XMP.

Francisella tularensis subsp. novicida (strain U112) (taxid: 401614)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|A4IXW6|GUAA_FRATW GMP synthase [glutamine-hydrolyzing] OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=guaA PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 38/167 (22%)

Query: 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE 176
           Q  G+++ GG  S Y  D   KA  +++++           P++GIC G Q ++     E
Sbjct: 49  QAKGIILSGGPESVYDSD--VKAPEIVFELG---------VPVLGICYGMQTMVMQHGGE 97

Query: 177 NELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT--SHITHNWHMWCITPSNF 234
            +   + +                   + +A I++L       S++ H   +W       
Sbjct: 98  VKGADQSE-------------------FGKAIINILNSTNNIFSNMEHEQLVWMSHSDKV 138

Query: 235 TDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYE 281
           T  G   E    STN+       +++V HK  PF G+QFHPE    E
Sbjct: 139 TQTGEHFEIIASSTNAP------VAAVAHKNKPFFGVQFHPETTHTE 179

Catalyzes the synthesis of GMP from XMP.

Francisella tularensis subsp. tularensis (strain WY96-3418) (taxid: 418136)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
345497598	320	PREDICTED: gamma-glutamyl hydrolase A-li	0.837	0.915	0.405	1e-65
307206353	344	Gamma-glutamyl hydrolase A [Harpegnathos	0.84	0.854	0.406	8e-65
340720772	322	PREDICTED: gamma-glutamyl hydrolase A-li	0.817	0.888	0.406	9e-64
242009081	320	gamma-glutamyl hydrolase precursor, puta	0.825	0.903	0.395	2e-63
307184425	349	Gamma-glutamyl hydrolase [Camponotus flo	0.842	0.845	0.409	3e-63
350398057	328	PREDICTED: gamma-glutamyl hydrolase-like	0.811	0.865	0.417	7e-63
322794376	342	hypothetical protein SINV_12245 [Solenop	0.842	0.862	0.392	2e-62
332030776	341	Gamma-glutamyl hydrolase B [Acromyrmex e	0.84	0.862	0.4	5e-62
158296287	377	AGAP006670-PA [Anopheles gambiae str. PE	0.834	0.774	0.373	2e-61
321466413	340	hypothetical protein DAPPUDRAFT_305752 [	0.825	0.85	0.376	1e-58

>gi|345497598|ref|XP_001601392.2| PREDICTED: gamma-glutamyl hydrolase A-like [Nasonia vitripennis]

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/348 (40%), Positives = 196/348 (56%), Gaps = 55/348 (15%)

Query: 4   TERPIIGILTQEPCLGVDKHFAD-FKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKIL 62
            ERPIIGIL+QE    +++ +   + SYI ASYVK +E++GARV PI+IG P        
Sbjct: 24  NERPIIGILSQEISYKLNEVYPGMYDSYIAASYVKYIESAGARVVPIWIGQP-------- 75

Query: 63  GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVL 122
                        S+Y D                                 ILG++NGVL
Sbjct: 76  ------------VSYYKD---------------------------------ILGKINGVL 90

Query: 123 IPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTR 182
            PGG   F   +GYA AGA+IYKIAK+FN+  D+FPI G CLGF+LL Y + N+ E R+ 
Sbjct: 91  FPGGSTYFNQSNGYADAGAVIYKIAKKFNKQGDFFPIWGTCLGFELLTYVAANKFEHRSD 150

Query: 183 CDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE 242
           C    + L LEF   FR S L+ +AP  V+Q L + ++T N+H +C+T        L  +
Sbjct: 151 CSSHNQALPLEFTSDFRDSRLFGKAPSDVIQILRSENVTGNYHRYCVTQEGLAKANLTNK 210

Query: 243 WKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFF 302
           ++V+S N +  G +FIS++EH   PF G+QFHPEKNAYEW   ++ PH+  A+   +YF 
Sbjct: 211 FRVMSVNHDWNGQEFISTLEHVSMPFYGVQFHPEKNAYEWVKGKNIPHSFNAVRTNQYFA 270

Query: 303 DWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350
           D+ V++A  +HH+F +  EE AALIYNY   +T  + G  Y Q Y+FK
Sbjct: 271 DFFVNEARKNHHAFPSAGEENAALIYNYPATFTG-MKGSSYLQCYMFK 317

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206353|gb|EFN84405.1| Gamma-glutamyl hydrolase A [Harpegnathos saltator]

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 142/349 (40%), Positives = 193/349 (55%), Gaps = 55/349 (15%)

Query: 3   ATERPIIGILTQEPCLGVDKHF-ADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61
           + +RPIIG+LTQE    +D+ +   + SYI ASYVK VE +GAR  PI+IG   +YY   
Sbjct: 39  SNDRPIIGVLTQEIDYNLDRKYPGQYHSYIAASYVKFVEGAGARPVPIWIGENNSYY--- 95

Query: 62  LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
                                                             E IL +VNGV
Sbjct: 96  --------------------------------------------------EDILSKVNGV 105

Query: 122 LIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT 181
           L PGG   F   DGYA AGA IY+IAK+ N+  +YFPI+GICLGF+LL Y + N  E RT
Sbjct: 106 LWPGGATYFNQRDGYADAGAAIYRIAKKINDEGEYFPILGICLGFELLTYVAANGIEHRT 165

Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK 241
            C    + L LEF P+F +S L+  AP+ +++ L    +T N+H +C+T  +     L  
Sbjct: 166 NCSSLNQPLPLEFKPNFNKSNLFKHAPLDIVEILKLERVTANYHQFCVTEESLRRVNLIN 225

Query: 242 EWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYF 301
           E++V+S N +  G +FIS++EHK YPF G+QFHPEKN YEWK  ++ PH   A   A+YF
Sbjct: 226 EFRVMSLNHDKLGQEFISTLEHKNYPFYGMQFHPEKNIYEWKTGKNIPHGINATRVAQYF 285

Query: 302 FDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350
            D+ +++A  + H F T +EE+ +LIYNY   YTA   G  Y Q Y+FK
Sbjct: 286 ADFFINEARRNSHRFSTPQEEERSLIYNYPVTYTA-PQGSTYLQCYMFK 333

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720772|ref|XP_003398804.1| PREDICTED: gamma-glutamyl hydrolase A-like [Bombus terrestris]

 Score =  250 bits (638), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 141/347 (40%), Positives = 186/347 (53%), Gaps = 61/347 (17%)

Query: 3   ATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKIL 62
              RPIIGIL QE        F+  KSYI ASYVK +E +GARV P++IG  E YY    
Sbjct: 28  VNNRPIIGILAQEK-------FSSNKSYIAASYVKFIEGAGARVVPLWIGRDECYY---- 76

Query: 63  GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVL 122
                                                            E IL ++NGVL
Sbjct: 77  -------------------------------------------------EDILSKINGVL 87

Query: 123 IPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTR 182
            PGG ASF ++ GYA AG  IYKIAK  N N DYFPI+GICLGF+LL Y        RT 
Sbjct: 88  WPGGSASFTSNKGYADAGYKIYKIAKRMNNNGDYFPILGICLGFELLTYVVAERVHHRTN 147

Query: 183 CDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE 242
           C      L LEF P +R+S ++S    +V   L T  +T N H +C+T       G++ +
Sbjct: 148 CSAQSLPLELEFTPGYRRSRMFSNISDNVEDILRTKKVTSNQHQYCVTKRGLQCAGVSNK 207

Query: 243 WKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFF 302
           +++LS N +  G++FISS+EH  YPF G+QFHPEKN YEW + +  PH + AIE ++YF 
Sbjct: 208 FRILSLNHDLDGVEFISSLEHITYPFYGLQFHPEKNLYEWIIGKKIPHGKNAIEISQYFA 267

Query: 303 DWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
           ++ V++A  +HH F+  +EE   LIYNY P YTA    I + Q+Y+F
Sbjct: 268 NFFVNEARKNHHIFQNSKEEARTLIYNYSPTYTALGNSI-FMQSYIF 313

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009081|ref|XP_002425321.1| gamma-glutamyl hydrolase precursor, putative [Pediculus humanus corporis] gi|212509095|gb|EEB12583.1| gamma-glutamyl hydrolase precursor, putative [Pediculus humanus corporis]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/344 (39%), Positives = 186/344 (54%), Gaps = 55/344 (15%)

Query: 6   RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQV 65
           RPIIG+LTQE    +++++    SY+ ASYVK +E++GARV PI+IG  E+YYR      
Sbjct: 31  RPIIGVLTQEVTGLLEQNYGKHCSYVAASYVKHLESAGARVVPIWIGADESYYRN----- 85

Query: 66  NGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPG 125
                                                           IL  +NGVL+PG
Sbjct: 86  ------------------------------------------------ILSLINGVLLPG 97

Query: 126 GGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC 185
           G + F   +GYA AG  I  IA EFN+N DYFPI G CLGF+L+ Y SNN N+LR  C  
Sbjct: 98  GASEFNVTNGYAAAGWYIMSIADEFNKNGDYFPIWGTCLGFELITYLSNNNNDLREDCKS 157

Query: 186 FYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV 245
             E L ++F P F  S L+   P  +++ L   + T N+H +CIT        L K WKV
Sbjct: 158 SNEALPIKFKPDFGNSRLFRLIPSEIVEILCKQNSTINFHQYCITEKLLYKYDLFKIWKV 217

Query: 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWL 305
           LSTN +  GL+F+SS+EH +YP+ G+QFHPEK AYEW    + PHTR  I+  +YF ++ 
Sbjct: 218 LSTNFDECGLEFVSSIEHNIYPYFGVQFHPEKPAYEWNPKHNTPHTRDVIKANQYFMEFF 277

Query: 306 VSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
           V +   + H+F +EE+E+  LIYN+   Y   +P   + Q Y F
Sbjct: 278 VDETRKNCHTFTSEEQERENLIYNFPTTYG--LPQSTFTQIYFF 319

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184425|gb|EFN70834.1| Gamma-glutamyl hydrolase [Camponotus floridanus]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/352 (40%), Positives = 198/352 (56%), Gaps = 57/352 (16%)

Query: 2   EATERPIIGILTQEPCLGVDKHFAD-FKSYIPASYVKAVEASGARVAPIFIGNPEAYYRK 60
           E  +RPIIGILTQE    ++K + D + SYI ASYVK VE +GAR  PI+I         
Sbjct: 39  ELNDRPIIGILTQEIDYNLNKEYPDQYHSYIAASYVKFVEGAGARPIPIWI--------- 89

Query: 61  ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNG 120
                      G   S+Y D                                 IL ++NG
Sbjct: 90  -----------GRNDSYYED---------------------------------ILNKING 105

Query: 121 VLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELR 180
           VL PGG   F+  +GYA AGA IY+IAK+ N+  +YFPI+GICLGF+LL Y + N  E R
Sbjct: 106 VLWPGGATYFFQKEGYADAGAAIYRIAKKINDRGEYFPILGICLGFELLTYVAANCVEHR 165

Query: 181 TRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITP--SNFTDNG 238
           T C    + L LEF   FR++ L+ + P  +L+ L   ++T N+H +C+T   S+ +   
Sbjct: 166 TACSSQNQPLPLEFTHDFREANLFKQVPPDILKILDEENVTANFHQYCVTKEASDLSRVQ 225

Query: 239 LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENA 298
           L  E++VLS N + +GL+FIS++EHK YPF G+QFHPEKN YEW   ++ PH R A   A
Sbjct: 226 LIDEFRVLSLNHDKKGLEFISTLEHKRYPFYGVQFHPEKNLYEWVTGKNIPHGRNATLAA 285

Query: 299 RYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350
           +YF ++ V++A  + H F TE+E K +LIYNY   YTA +    + Q Y+FK
Sbjct: 286 QYFANFFVNEARKNLHEFATEQEAKESLIYNYPVTYTA-LQNSTFQQCYMFK 336

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398057|ref|XP_003485074.1| PREDICTED: gamma-glutamyl hydrolase-like [Bombus impatiens]

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 144/345 (41%), Positives = 187/345 (54%), Gaps = 61/345 (17%)

Query: 6   RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQV 65
           RPIIGIL QE      K     KSYI ASYVK +E +GARV PI+IG  E YY       
Sbjct: 37  RPIIGILAQE------KSPDHSKSYIAASYVKFIEGAGARVVPIWIGRDECYY------- 83

Query: 66  NGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPG 125
                                                         E IL ++NGVL PG
Sbjct: 84  ----------------------------------------------EDILSKINGVLWPG 97

Query: 126 GGASFY-ADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCD 184
           G ASF  ++ GYA AG  IYKIAK  N+N DYFPI+GICLGF+LL Y        RTRC 
Sbjct: 98  GSASFANSNGGYADAGYKIYKIAKRMNDNGDYFPILGICLGFELLTYVVAERFPHRTRCR 157

Query: 185 CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWK 244
                L LEF P ++   ++S    +V   L T  +T N H+ C+T S     G++ +++
Sbjct: 158 AQTLPLQLEFTPDYKSGRMFSDISDNVEDILRTKKVTSNQHLNCVTKSGLQRAGVSDKFQ 217

Query: 245 VLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDW 304
           +LS N +   L+FISS+EH  YPF G+QFHPEKN YEWK+ +  PH + AIE A+YF ++
Sbjct: 218 ILSLNHDLNNLEFISSLEHITYPFYGLQFHPEKNLYEWKIGEKIPHGKNAIEIAQYFANF 277

Query: 305 LVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
            V++A  +HH F++ EEE   LIYNY P YTA    + + Q+Y+F
Sbjct: 278 FVNEARKNHHIFQSSEEEAQTLIYNYSPTYTALGDSV-FMQSYIF 321

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794376|gb|EFZ17480.1| hypothetical protein SINV_12245 [Solenopsis invicta]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 196/362 (54%), Gaps = 67/362 (18%)

Query: 2   EATERPIIGILTQEPCLGVDKHFAD-FKSYIPASYVKAVEASGARVAPIFIGNPEAYYRK 60
           E+ +RPI+GILTQE    ++K + + + SYI ASYVK VE +GAR  PI+IG  ++YY  
Sbjct: 22  ESNDRPIVGILTQEIDYNLNKKYPNQYHSYIAASYVKFVEGAGARPVPIWIGENDSYY-- 79

Query: 61  ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNG 120
                                                              E IL +VNG
Sbjct: 80  ---------------------------------------------------EDILNKVNG 88

Query: 121 VLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELR 180
           VL PGG   F+  +GYA AG  IY+IAKE NE  +YFPI GICLGF+LL Y + N  E R
Sbjct: 89  VLWPGGSTYFFQREGYADAGTTIYRIAKEINERGEYFPIFGICLGFELLTYVAANRVEHR 148

Query: 181 TRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITP--------- 231
           T C    + L LEF   FR+S L+  AP +VL+ L+  ++T N+H +C+T          
Sbjct: 149 TSCSSSNQPLPLEFTDDFRESNLFKDAPPNVLRILSEENVTANYHHFCVTKKAIKRMYTI 208

Query: 232 ---SNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDN 288
               +     L+ E+ VLS N + +GL+FISS+EH  YPF G+QFHPEKN YEW   ++ 
Sbjct: 209 FLLQDLHRVNLSDEFHVLSLNRDKKGLEFISSLEHTQYPFYGLQFHPEKNLYEWVTGKNI 268

Query: 289 PHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYL 348
           PH   A   ++YF ++ V++   + H F T++EE+ +LIYNY   YTA +    + Q Y+
Sbjct: 269 PHGIDATIVSQYFANFFVNEVRKNSHEFRTKQEEEQSLIYNYPVTYTA-LKNSTFQQCYM 327

Query: 349 FK 350
           FK
Sbjct: 328 FK 329

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030776|gb|EGI70452.1| Gamma-glutamyl hydrolase B [Acromyrmex echinatior]

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/350 (40%), Positives = 191/350 (54%), Gaps = 56/350 (16%)

Query: 2   EATERPIIGILTQEPCLGVDKHFAD-FKSYIPASYVKAVEASGARVAPIFIGNPEAYYRK 60
           E   RPIIGILTQE    ++K + + + SYI ASYVK VE +GAR  PI+IG        
Sbjct: 35  ELNNRPIIGILTQEISYNLNKTYPNQYHSYIAASYVKFVEGAGARAVPIWIG-------- 86

Query: 61  ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNG 120
                       G   +Y D                                 IL +VNG
Sbjct: 87  ------------GNTLYYKD---------------------------------ILSKVNG 101

Query: 121 VLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELR 180
           VL PGG   F   +GYA AGA IY+IAK  NE   YFPI GICLGF+LL Y + N    R
Sbjct: 102 VLWPGGSTYFSQKEGYADAGAKIYRIAKRINEEGKYFPIFGICLGFELLTYVAANRVAHR 161

Query: 181 TRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA 240
           T+C    + L LEF P +R+S L+  AP++VL+ L+  ++T N+H  C+T        L 
Sbjct: 162 TQCSSNNQRLPLEFTPGYRESKLFKNAPLNVLRVLSEQNVTANYHHLCVTKKALRHVNLT 221

Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
            E+ VLS N +  GL+FIS++EHK +PF G+QFHPEKN YEW + +  PH+  A   ++Y
Sbjct: 222 DEFHVLSLNHDENGLEFISTLEHKQFPFYGLQFHPEKNLYEWVIGKRIPHSINATIASQY 281

Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350
           F ++ V++A  + + F  +EE++ +LIYNY   YTA +    + Q Y+FK
Sbjct: 282 FANFFVNEARKNFNEFRKQEEQR-SLIYNYPITYTA-LQNSSFQQCYMFK 329

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296287|ref|XP_316706.4| AGAP006670-PA [Anopheles gambiae str. PEST] gi|157016439|gb|EAA11416.4| AGAP006670-PA [Anopheles gambiae str. PEST]

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 190/348 (54%), Gaps = 56/348 (16%)

Query: 5   ERPIIGILTQEPCLGVDKHFAD--FKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKIL 62
           ++P++GIL+QE    + +++ D  + SYI ASYVK VE +GARV PI+I  P  YY+ I+
Sbjct: 52  DQPVVGILSQELSYLMTQNYGDAGYDSYIAASYVKFVEGAGARVVPIWINQPVEYYQTIM 111

Query: 63  GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVL 122
             +NGVL+PGG   F   +GYA AG  IY IA +                          
Sbjct: 112 ANLNGVLLPGGATWFNQSNGYADAGRHIYDIAMQ-------------------------- 145

Query: 123 IPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTR 182
                                      +NEN +YFP+ G CLGF+LL Y + N  E R  
Sbjct: 146 ---------------------------YNENGEYFPLWGTCLGFELLTYLAANGTEHRAH 178

Query: 183 CDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE 242
           C    + L L F   FR+S L++ AP  V+  L+   +T N+H +C+T +N T  GL +E
Sbjct: 179 CRSNSQALPLNFKDDFRKSRLFASAPNDVIDILSNEPVTANFHQFCVTEANLTAYGLDEE 238

Query: 243 WKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFF 302
           W+V+S + +  G++FIS++EHK YPF GIQFHPEKN YEW   ++  HT  A+  A++F 
Sbjct: 239 WRVMSVDRDWNGMEFISTIEHKSYPFYGIQFHPEKNIYEWIQNKNISHTANAVRAAQFFA 298

Query: 303 DWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350
           D+ +++A  S HSF  E   +  +IYNY P +T  +    ++Q Y+F+
Sbjct: 299 DFFIAEARKSDHSFPNEATLEKHVIYNYQPTFTG-LQRSSFEQCYMFQ 345

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466413|gb|EFX77408.1| hypothetical protein DAPPUDRAFT_305752 [Daphnia pulex]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 182/345 (52%), Gaps = 56/345 (16%)

Query: 6   RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQV 65
           RPIIGIL+QEP   +     +  SYI ASYVK +E  GARV PI I  P++YY       
Sbjct: 50  RPIIGILSQEPSKSMASVSPESVSYIAASYVKWLEGQGARVVPIRINQPDSYY------- 102

Query: 66  NGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPG 125
                                                         + I   +NG+LIPG
Sbjct: 103 ----------------------------------------------KAIFNSINGLLIPG 116

Query: 126 GGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC 185
           GGAS     GY +AG+++Y ++ E N N D+FP+ G CLGF+LLLY S  +    T C+ 
Sbjct: 117 GGASL-VTSGYGRAGSILYDLSIEANNNGDFFPVWGTCLGFELLLYLSAAKKNYLTSCES 175

Query: 186 FYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV 245
           +     L+F+P    S LY RAP  VL+ L+    T N+H WC+T  N T + L K ++ 
Sbjct: 176 YNRASTLKFLPDASTSHLYQRAPDGVLKTLSKEKSTSNFHHWCMTRENMTMSNLDKFYRP 235

Query: 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDN-PHTRIAIENARYFFDW 304
           L+T++++ GL+F++++E   YP  G+QFHPEKN YEW     + PH+  A++   YF D+
Sbjct: 236 LATSTDDSGLEFVATIEAVNYPIWGVQFHPEKNVYEWGANLTSVPHSPGAVKAGLYFADF 295

Query: 305 LVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
            VSQA  S H F +  EE++ LIYNY P YT  +    + Q+Y F
Sbjct: 296 FVSQARKSQHRFSSRREEESYLIYNYSPVYTGNVSS-SFLQSYFF 339

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
DICTYBASE|DDB_G0286535	317	gghA "peptidase C26 family pro	0.674	0.744	0.351	1.1e-46
FB|FBgn0263607	373	l(3)72Dp "lethal (3) 72Dp" [Dr	0.82	0.769	0.350	1.1e-46
ZFIN|ZDB-GENE-040426-2615	312	ggh "gamma-glutamyl hydrolase	0.66	0.740	0.420	5.7e-43
UNIPROTKB|F1NR48	321	GGH "Uncharacterized protein"	0.742	0.809	0.372	1.1e-41
MGI|MGI:1329035	317	Ggh "gamma-glutamyl hydrolase"	0.742	0.820	0.354	1.4e-39
RGD|2682	317	Ggh "gamma-glutamyl hydrolase	0.751	0.829	0.343	2.1e-38
UNIPROTKB|A7YWG4	318	GGH "Gamma-glutamyl hydrolase"	0.662	0.729	0.375	3.4e-38
ZFIN|ZDB-GENE-050309-193	314	zgc:171566 "zgc:171566" [Danio	0.665	0.742	0.372	8e-37
UNIPROTKB|Q92820	318	GGH "Gamma-glutamyl hydrolase"	0.74	0.814	0.334	5.7e-36
UNIPROTKB|E2QUT9	318	GGH "Uncharacterized protein"	0.662	0.729	0.358	7.2e-36

DICTYBASE|DDB_G0286535 gghA "peptidase C26 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 357 (130.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 85/242 (35%), Positives = 129/242 (53%)

Query:   111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ-LL 169
             + +++G +NGV  PGGG  F     Y      I+    EFN N DYFP+ G C+GFQ L 
Sbjct:    78 LTELMGSINGVFFPGGGVDFNNQTVYTDTIQSIWSQVVEFNNNGDYFPLWGTCMGFQELA 137

Query:   170 LYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCI 229
             L +++N N L +     Y  + L F      S L+S A   ++Q LA+  IT N H + +
Sbjct:   138 LLSADNFNLLSSYNSENY-TVPLNFTSLAAGSRLFSLASSSIMQSLASEPITMNNHQFGL 196

Query:   230 TPSNFTD-NGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDN 288
             +P  +   + +   + VLSTN +  G  FIS++E K YP  G Q+HPEK  +EW   +  
Sbjct:   197 SPQTYQQTSSINTFFDVLSTNVDRDGNTFISTIEAKNYPIYGTQWHPEKPIFEWWDQEVM 256

Query:   289 PHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYT-AYIPGIGYDQTY 347
              H+  +I   +Y  ++ V++   S HSF     E + LIYNY P+Y+ + +P   ++Q Y
Sbjct:   257 NHSFDSIMANQYTSNFFVNECRKSLHSFSDPSVEASTLIYNYTPQYSESTVPD--FEQIY 314

Query:   348 LF 349
              F
Sbjct:   315 YF 316

GO:0005615 "extracellular space" evidence=IEA;ISS;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA;ISS

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0263607 l(3)72Dp "lethal (3) 72Dp" [Drosophila melanogaster (taxid:7227)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 102/291 (35%), Positives = 163/291 (56%)

Query:    61 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIW--QSLLKIEKILGQV 118
             I+G +   +   G  S + D+  +   A   K  +    R + IW  ++    + ++ ++
Sbjct:    27 IIGVLTQEVYVDGLISRHFDNKTSYIAASYVKYLEGAGARVVPIWIGRNRSYYDDLMRKI 86

Query:   119 NGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENE 178
             NGVL+PGG   F   +GYA AG  +  +A E N+   + P+ G CLG +LL+Y   NE E
Sbjct:    87 NGVLLPGGATWFNQSNGYADAGEHLIHLAIELNDQGVFMPVWGTCLGMELLVYKLANETE 146

Query:   179 LRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG 238
              R  C+     + +EF   +++S L++     V+  +   ++T++WH +C T  +F  + 
Sbjct:   147 HRINCEATGMAVPMEFKEDYKKSRLFASITDDVVDTMVKENVTYHWHQFCYTEKDFERDL 206

Query:   239 LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENA 298
             L + W+V+S N +  G++FIS+VEH  YPF G+QFHPE+  YE+  T   PHT  A+ + 
Sbjct:   207 LNETWRVMSLNHDWNGVEFISTVEHIKYPFYGVQFHPEEPLYEFTKTSI-PHTAAAVLSG 265

Query:   299 RYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             ++F D+ VS+A  S+ SF    E+   LIYNY PEYT+ + G  Y Q YLF
Sbjct:   266 QFFADFFVSEARESNQSFSNATEQARTLIYNYKPEYTSIL-GSSYIQQYLF 315

GO:0008242 "omega peptidase activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA

ZFIN|ZDB-GENE-040426-2615 ggh "gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)" [Danio rerio (taxid:7955)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 100/238 (42%), Positives = 141/238 (59%)

Query:   113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172
             ++   +NGVL PGGG S  +  GY+KA  + Y++A E N N DYFP+ G CLGF+LL   
Sbjct:    80 RLFKSINGVLFPGGGVSLESS-GYSKAAGIFYRLALEANSNGDYFPVWGTCLGFELLTLL 138

Query:   173 SNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPS 232
             ++ E  L +  +     L L+F    + S L+   P  +++ LAT  +T N H W IT  
Sbjct:   139 TSGEL-LLSHTNTSGIALPLDFTEDVKGSRLFKEFPEELMKSLATEPLTENSHQWSITTE 197

Query:   233 NFTDNG-LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHT 291
             NFT N  L K ++VLSTN++    KF+S++E   +P    Q+HPEKNA+EW      PHT
Sbjct:   198 NFTANKKLKKFYRVLSTNTDGYN-KFVSTMEAYDFPIYATQWHPEKNAFEWTRPYI-PHT 255

Query:   292 RIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
               AI+   Y  ++ V++A  + HSF + EEE+ ALIYNY PEYT  I    ++QTY F
Sbjct:   256 PSAIKTTFYMANFFVNEARKNLHSFASTEEEEKALIYNYKPEYTG-IQS-AFEQTYFF 311

GO:0003824 "catalytic activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IDA

GO:0006760 "folic acid-containing compound metabolic process" evidence=IDA

UNIPROTKB|F1NR48 GGH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 105/282 (37%), Positives = 152/282 (53%)

Query:    74 GASFYADDGYAK----AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGAS 129
             G+S+ A   Y K    AGA I  I   +S  E D         +I   +NGVL PGGG  
Sbjct:    55 GSSYIAAS-YVKFLESAGARIVPIRLNLSDEEYD---------RIFHSINGVLFPGGGVD 104

Query:   130 FYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL-RTRCDCFYE 188
                 + Y++   + Y+ A E N+  DYFP+ G CLG +LL Y ++ E  L  T+ + F  
Sbjct:   105 LKTSE-YSRVAKIFYRKALEANDKGDYFPVWGTCLGHELLTYLTSGEILLVNTKTNGF-- 161

Query:   189 NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG-LAKEWKVLS 247
             +L L F  + ++S L+   P  +L   A   +T N+H+W I+  NFT N  L   + +L+
Sbjct:   162 SLPLNFTSAAKRSRLFKNLPNDLLHAFANEPLTSNFHVWSISMENFTKNEKLYNFYNILT 221

Query:   248 TNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307
             TN +N  ++FIS++E   YP  G+Q+HPEKN++EWK +   PH+  AI  A Y  D+ ++
Sbjct:   222 TNIDNE-VEFISTMEAYKYPIYGVQWHPEKNSFEWKNSSGIPHSSSAIRAAHYIADFFIN 280

Query:   308 QASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             +A  S H F +E EE   LIYNY P YT       + Q Y F
Sbjct:   281 EARKSLHRFPSEGEETKELIYNYTPTYTGTFSS--FQQVYFF 320

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IEA

MGI|MGI:1329035 Ggh "gamma-glutamyl hydrolase" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 99/279 (35%), Positives = 152/279 (54%)

Query:    76 SFYADDGYAK----AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFY 131
             ++Y    Y K    AGA +  I  ++S  E          E++   +NGVL+PGGGA+  
Sbjct:    52 NYYIAASYVKYIESAGARVVPIRPDLSDAEY---------EELFRSINGVLLPGGGANL- 101

Query:   132 ADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191
              D GY++   + +  A E  +N D+FP+ G CLGF+ L    + EN L T  D   + L 
Sbjct:   102 TDSGYSRVAKIFFSKALESFDNGDHFPVWGTCLGFEELSVLVSGEN-LLTSTDTKSKKLP 160

Query:   192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG-LAKEWKVLSTNS 250
             L F    R+S ++   P  +L  LA  ++T N+H W ++  NFT+N  L K + +L+TN+
Sbjct:   161 LNFTEGARKSRMFKHFPTELLDSLALENLTANFHKWSLSVKNFTENEKLKKFFNILTTNT 220

Query:   251 NNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310
             + +  +FISS+E   YP   +Q+HPEK A+EWK      H   A++ + Y  ++LVS+A 
Sbjct:   221 DGK-TEFISSMEGFKYPVYAVQWHPEKAAFEWKNLGGISHAPNAVKTSFYLAEFLVSEAR 279

Query:   311 GSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
              + H FE   +E A+LIY + P YT  I    + Q Y+F
Sbjct:   280 KNSHHFENVVKETASLIYKFNPIYTGNISS--FQQAYMF 316

GO:0003824 "catalytic activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005764 "lysosome" evidence=TAS

GO:0005829 "cytosol" evidence=ISO

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0010043 "response to zinc ion" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=ISO

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

RGD|2682 Ggh "gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 94/274 (34%), Positives = 145/274 (52%)

Query:    77 FYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGY 136
             FY    Y K    I      V    LD+  +  + E +   +NGVL+PGGGA+     GY
Sbjct:    53 FYIAASYVK---FIESAGARVVPIRLDLNDA--QYETLFRSINGVLLPGGGANL-THSGY 106

Query:   137 AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMP 196
             ++   + +  A E  +N DYFP+ G CLG + L    +N+N L T  +     L L F  
Sbjct:   107 SRVAKIFFTKALESFDNGDYFPVWGTCLGLEELSVLVSNDN-LLTLTNTSSVKLPLNFTR 165

Query:   197 SFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG-LAKEWKVLSTNSNNRGL 255
               +QS ++   P  +L  LA+ ++T N+H W ++  NFT+N  L K + +L+ N++ +  
Sbjct:   166 DSKQSRMFRNLPEELLNSLASENLTANFHKWSLSVKNFTENEKLKKFFNILTVNTDGK-T 224

Query:   256 KFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHS 315
             +FISS+E   YP   +Q+HPEK  +EWK  +   H   A++ + Y   + +S+A  + H 
Sbjct:   225 EFISSMEGYKYPIYAVQWHPEKAPFEWKKLRGISHAPNAVKTSFYLAKFFISEALKNDHH 284

Query:   316 FETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             FE E EE  +LIY +CP YT  I    + Q Y+F
Sbjct:   285 FENELEETESLIYQFCPVYTGNISS--FQQAYMF 316

GO:0005615 "extracellular space" evidence=IDA;TAS

GO:0005764 "lysosome" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0010043 "response to zinc ion" evidence=IDA

GO:0032868 "response to insulin stimulus" evidence=IDA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=ISO;ISS

GO:0042470 "melanosome" evidence=IEA

GO:0042493 "response to drug" evidence=IDA

GO:0045471 "response to ethanol" evidence=IDA

UNIPROTKB|A7YWG4 GGH "Gamma-glutamyl hydrolase" [Bos taurus (taxid:9913)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 90/240 (37%), Positives = 133/240 (55%)

Query:   112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIA-KEFNENRDYFPIMGICLGFQLLL 170
             EK+   +NGVL PGG  +     GYA+   M Y ++ K F E  DYFP+ G CLGF+ L+
Sbjct:    84 EKLFKSINGVLFPGGSVNLMRS-GYARVAKMFYNLSIKSFGEG-DYFPVWGTCLGFEELI 141

Query:   171 YTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCIT 230
             Y  + E+ L T  D     L L F     QS ++   P  +L  LA   +T ++H W ++
Sbjct:   142 YLVSGES-LLTLTDTVGIKLPLNFSRGTLQSRMFQNFPADLLLSLAVEPLTAHFHKWSLS 200

Query:   231 PSNFTDNGLAKEW-KVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNP 289
               NFT N   K +  +L+TN++   + FIS++E   YP  G+Q+HPEK  YEW   +   
Sbjct:   201 VMNFTKNEKLKAFFSILTTNTDGN-IDFISTMEGYRYPIYGVQWHPEKAPYEWGQLRGIS 259

Query:   290 HTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             H   A++ A Y  ++ V++A  S+H FE++ EE  ALIY Y P YT  +    + Q+Y+F
Sbjct:   260 HAPNAVKAAFYLAEFFVAEARKSNHHFESDVEETKALIYQYRPTYTGNVSS--FQQSYIF 317

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050309-193 zgc:171566 "zgc:171566" [Danio rerio (taxid:7955)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 89/239 (37%), Positives = 133/239 (55%)

Query:   112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171
             E +   +NG+L+PGG         + +A  + Y++A + N+  DYFPI G C GFQ    
Sbjct:    80 ETLFNAINGLLLPGGNVDIETSQ-FTRAARIFYELALKANDASDYFPIWGTCQGFQQFTV 138

Query:   172 TSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITP 231
              ++N+N L T  D     L L F P  + S L+ + P  VLQ LA  +IT N+H W ++ 
Sbjct:   139 LTSNKN-LLTLTDTKAVALPLTFSPGAQNSRLFKKFPKDVLQSLAEENITSNFHSWSLST 197

Query:   232 SNFTDNGLAKE-WKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPH 290
              N++ N   K  ++VL+TN++ R  +FIS++E   YPF  +Q+HPEK+ +EW       H
Sbjct:   198 QNYSANPKLKRFYRVLTTNTDGRK-EFISTMEAYRYPFYAVQWHPEKSPFEWIEKSGMVH 256

Query:   291 TRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             T  AI+   Y   + VS+A  + H F ++ EE+ ALIYNY P Y   +  I + Q Y F
Sbjct:   257 TLSAIKATFYTAHFFVSEAMKNRHQFPSQIEEEKALIYNYQPVYNG-LNSI-FLQNYYF 313

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q92820 GGH "Gamma-glutamyl hydrolase" [Homo sapiens (taxid:9606)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 93/278 (33%), Positives = 146/278 (52%)

Query:    77 FYADDGYAK----AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYA 132
             +Y    Y K    AGA +  +  +++ ++ +I   L K       +NG+L PGG      
Sbjct:    54 YYIAASYVKYLESAGARVVPVRLDLTEKDYEI---LFK------SINGILFPGGSVDLRR 104

Query:   133 DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192
              D YAK   + Y ++ +  ++ DYFP+ G CLGF+ L    + E  L T  D     + L
Sbjct:   105 SD-YAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLTATDTVDVAMPL 162

Query:   193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG-LAKEWKVLSTNSN 251
              F      S ++   P  +L  LA   +T N+H W ++  NFT N  L K + VL+TN++
Sbjct:   163 NFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD 222

Query:   252 NRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311
              + ++FIS++E   YP  G+Q+HPEK  YEWK      H   A++ A Y  ++ V++A  
Sbjct:   223 GK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARK 281

Query:   312 SHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             ++H F++E EE+ ALIY + P YT  I    + Q Y+F
Sbjct:   282 NNHHFKSESEEEKALIYQFSPIYTGNISS--FQQCYIF 317

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0010043 "response to zinc ion" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IDA

GO:0008238 "exopeptidase activity" evidence=TAS

GO:0008242 "omega peptidase activity" evidence=TAS

UNIPROTKB|E2QUT9 GGH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 86/240 (35%), Positives = 131/240 (54%)

Query:   112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171
             +K+   +NG+L PGG        GYA A    Y  AK+  ++ DYFP+ G CLGF+ L Y
Sbjct:    84 KKLFQSINGILFPGGSVDL-KKSGYALAAKTFYNFAKQSFDDGDYFPVWGTCLGFEELSY 142

Query:   172 TSNNENELR-TRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCIT 230
               + +  L  T  D     + L F     QS ++   P  +L+ L+   +T N+H W ++
Sbjct:   143 LISGQCLLTLTHTDGI--TMPLNFTKDASQSRMFQNFPPDLLKSLSVEPLTANFHKWSLS 200

Query:   231 PSNFTDNGLAKEW-KVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNP 289
              +NFT N   KE+  VL+TN++ +  +FIS++E   YP  G+Q+HPEK  YEW   +   
Sbjct:   201 VTNFTKNENLKEFFNVLTTNTDGK-TEFISTMEGYKYPVYGVQWHPEKAPYEWGQLKGIS 259

Query:   290 HTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             H   A++ A Y  ++ V++A  + H FE+  EE  ALIY + P YT  I    + Q+Y+F
Sbjct:   260 HAPNAVKAAFYLAEFFVAEARKNSHHFESAVEENEALIYQFRPVYTGNISS--FQQSYIF 317

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q62867	GGH_RAT	3, ., 4, ., 1, 9, ., 9	0.3237	0.82	0.9053	yes	N/A
Q92820	GGH_HUMAN	3, ., 4, ., 1, 9, ., 9	0.3008	0.8228	0.9056	yes	N/A
Q54HL4	GGHB_DICDI	3, ., 4, ., 1, 9, ., 9	0.3121	0.7828	0.7896	yes	N/A
Q9Z0L8	GGH_MOUSE	3, ., 4, ., 1, 9, ., 9	0.3275	0.8171	0.9022	yes	N/A
A7YWG4	GGH_BOVIN	3, ., 4, ., 1, 9, ., 9	0.3682	0.6657	0.7327	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19.9	0.824
3rd Layer	3.4.19	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	350
cd01747	273	cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutam	2e-87
pfam07722	219	pfam07722, Peptidase_C26, Peptidase C26	6e-22
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	4e-11
COG2071	243	COG2071, COG2071, Predicted glutamine amidotransfe	2e-07
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	5e-06
cd01740	238	cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotr	4e-05
cd01745	189	cd01745, GATase1_2, Subgroup of proteins having th	5e-05
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	6e-05
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	6e-05
cd01742	181	cd01742, GATase1_GMP_Synthase, Type 1 glutamine am	7e-05
COG0047	231	COG0047, PurL, Phosphoribosylformylglycinamidine (	7e-05
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	1e-04
TIGR01823	742	TIGR01823, PabB-fungal, aminodeoxychorismate synth	2e-04
CHL00101	190	CHL00101, trpG, anthranilate synthase component 2	4e-04
TIGR00888	188	TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd	5e-04
TIGR00337	525	TIGR00337, PyrG, CTP synthase	6e-04
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	6e-04
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	0.001
COG0118	204	COG0118, HisH, Glutamine amidotransferase [Amino a	0.001
PLN02617	538	PLN02617, PLN02617, imidazole glycerol phosphate s	0.002
PRK03619	219	PRK03619, PRK03619, phosphoribosylformylglycinamid	0.002
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	0.002
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	0.003
cd01748	198	cd01748, GATase1_IGP_Synthase, Type 1 glutamine am	0.003
PRK06895	190	PRK06895, PRK06895, putative anthranilate synthase	0.003

>gnl|CDD|153218 cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

 Score =  263 bits (675), Expect = 2e-87
 Identities = 123/328 (37%), Positives = 165/328 (50%), Gaps = 57/328 (17%)

Query: 9   IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGV 68
           IGILTQ P  G         SYI ASYVK +E++GARV PI+I   E YY K+   +NG+
Sbjct: 1   IGILTQ-PVDG-AGSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGI 58

Query: 69  LIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGA 128
           L PGG                  + AK                                 
Sbjct: 59  LFPGGAVDIDTSG--------YARTAKI-------------------------------- 78

Query: 129 SFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE 188
                         IY +A E N+  DYFP+ G CLGF+LL Y ++ E  L    +    
Sbjct: 79  --------------IYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNS 124

Query: 189 NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW-KVLS 247
            L L F     QS L+ R P  +L+ LAT  +T N H + I+P NFT+NGL  ++  VL+
Sbjct: 125 ALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLT 184

Query: 248 TNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307
           TN +  G++FIS+VE   YP  G+Q+HPEKNA+EWK +   PH+  AI   +YF ++ V+
Sbjct: 185 TNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVN 244

Query: 308 QASGSHHSFETEEEEKAALIYNYCPEYT 335
           +A  S++ FE+ EEE   LIYNY P YT
Sbjct: 245 EARKSNNRFESAEEETKHLIYNYKPTYT 272

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 273

>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26

 Score = 91.9 bits (229), Expect = 6e-22
 Identities = 60/289 (20%), Positives = 82/289 (28%), Gaps = 89/289 (30%)

Query: 7   PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVN 66
           P+IGI       G     A   SYI ASYVKAVE +G     + I         +L  V+
Sbjct: 1   PVIGITANLGEEGGHVFHAAGASYIAASYVKAVEGAGGLPVLLPILEDPEDLEALLDLVD 60

Query: 67  GVLIPGGGA----SFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVL 122
           G+L+ GG +    S Y                                            
Sbjct: 61  GLLLTGGQSNVDPSLY-------------------------------------------- 76

Query: 123 IPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL-------LYTSNN 175
               G       GY       +++A          PI+GIC G QLL       LY    
Sbjct: 77  ----GEEPSPSGGYYDPARDAFELALIRAALERGKPILGICRGMQLLNVALGGTLYQDIP 132

Query: 176 ENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHV-----LQELATSHITH--NWHMWC 228
           E+   +                           + +     L  L  +      + H   
Sbjct: 133 EHPGNSDHHH------------QLAVQYAPSHAVSLEPGSLLARLLGAEEILVNSLHHQA 180

Query: 229 ITPSNFTDNGLAKEWKVLSTNSNNRGLK-FISSVEHKVYPFAGIQFHPE 276
           I         LA   +V +T     G    I S     Y   G+Q+HPE
Sbjct: 181 IKR-------LAPGLRVEATAP--DGTIEAIESPNAP-YFVLGVQWHPE 219

These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 31/158 (19%)

Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL 179
           G++I  G  S  A  G       I +  KE  EN+   PI+GICLG QLL          
Sbjct: 43  GIIISPGPGSPGALGG------AI-EAIKELRENK--IPILGICLGHQLL---------- 83

Query: 180 RTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL 239
                 F   +                    +   L    I   +H + + P       L
Sbjct: 84  ---ALAFGGKVIKAKKEPHHGKNSPVGHDKGLFYGLPNVFIVRRYHSYAVDPDT-----L 135

Query: 240 AKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
               +V + + N      I ++ HK  P  G+QFHPE 
Sbjct: 136 PDGLEVTAASENGG----IMAIRHKENPIFGVQFHPES 169

Length = 186

>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 62/319 (19%), Positives = 101/319 (31%), Gaps = 104/319 (32%)

Query: 6   RPIIGILTQEPCLGVDKHFADFK-SYIPASYVKAVEASGARVAPIFI--GNPEAYYRKIL 62
           +P+IGI T +        F     SY+P  YV A+  +G    PI +         R+ L
Sbjct: 3   KPVIGI-TADLIQ-EIVGFDGNPWSYLPYDYVDAIIKAG--GIPILLPALEDPEDARQYL 58

Query: 63  GQVNGVLIPGGG---ASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVN 119
             ++G+++ GG     S Y ++   K G                                
Sbjct: 59  DLIDGLILTGGSNVDPSLYGEEPSEKDGPY------------------------------ 88

Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL-------LYT 172
                         D +  A   + + A E        PI+GIC G QLL       LY 
Sbjct: 89  ----------DPERDAFELA---LIRAALERG-----IPILGICRGLQLLNVALGGTLYQ 130

Query: 173 SNNE----NELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC 228
             +E     + R       E+  +   P  + + +   +   V          +++H   
Sbjct: 131 DISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESEFMV----------NSFH--- 177

Query: 229 ITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQD 287
               +     LA    V +   +      + +VE K   F  G+Q+HPE       L   
Sbjct: 178 ----HQAIKKLAPGLVVEARAPDG----TVEAVEVKNDAFVLGVQWHPE------YLVDT 223

Query: 288 NPHTRIAIENARYFFDWLV 306
           NP +          F+  V
Sbjct: 224 NPLSLA-------LFEAFV 235

Length = 243

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173
           L   +G+++PGG  +           A++ + A          PI+GICLG QLL+   
Sbjct: 44  LDDYDGLILPGGPGTPDDLARDEALLALLREAAAA------GKPILGICLGAQLLVLGV 96

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 103 DIW-QSLLKIEKILGQVNGVLIPGGGASF-YAD--DGYAKAGAMIYKIA--KEFNENRDY 156
           D+W   LL   K L   +GV++PGG   F Y D     A A A    +   KEF E R  
Sbjct: 28  DVWHNDLLAGRKDLDDYDGVVLPGG---FSYGDYLRAGAIAAASPLLMEEVKEFAE-RGG 83

Query: 157 FPIMGICLGFQLL 169
             ++GIC GFQ+L
Sbjct: 84  -LVLGICNGFQIL 95

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 238

>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 48/161 (29%)

Query: 9   IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGV 68
           IGI T         +    + Y+   YV AV  +G     +   + E    + L  ++G+
Sbjct: 1   IGI-TARLREEEGGYE--RRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGL 57

Query: 69  LIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGA 128
           L+ GGG                            D+   L               P  G 
Sbjct: 58  LLTGGG----------------------------DVDPPLY---------GEEPHPELGP 80

Query: 129 SFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
                D +  A   + + A E        PI+GIC G QLL
Sbjct: 81  IDPERDAFELA---LLRAALERG-----KPILGICRGMQLL 113

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 189

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 11/64 (17%)

Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAM-----IYKIAKEFNENRDYFPIMGICLGF 166
           +  L   +GV++PGG   F   D Y +AGA+     I +  +EF E     P++GIC GF
Sbjct: 35  DGSLPDYDGVVLPGG---FSYGD-YLRAGAIAAASPIMQEVREFAE--KGVPVLGICNGF 88

Query: 167 QLLL 170
           Q+L+
Sbjct: 89  QILV 92

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 42/130 (32%)

Query: 157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELA 216
            PI+G+CLG Q +              + F     +   P          + IH      
Sbjct: 72  VPILGVCLGHQAI-------------AEAF--GGKVVRAPEPMHGK---TSEIHHDGSGL 113

Query: 217 TSHITHNWHMWCITPSNFT----------DNGLAKEWKVLSTNSNNRGLKFISSVEHKVY 266
              +          P  FT           + L    +V  T S   G+  I ++ H+  
Sbjct: 114 FKGL----------PQPFTVGRYHSLVVDPDPLPDLLEV--TASTEDGV--IMALRHRDL 159

Query: 267 PFAGIQFHPE 276
           P  G+QFHPE
Sbjct: 160 PIYGVQFHPE 169

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 61/199 (30%)

Query: 93  IAKEVSYRELDIWQSLL----KIEKILGQ-VNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
           IA+ V  REL ++  +L     +E+I  +   G+++ GG +S Y +D          ++ 
Sbjct: 14  IARRV--RELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED--------APRVD 63

Query: 148 KE-FNENRDYFPIMGICLGFQLLLY-------TSNNENELRTRCDCFYENLALEFMPSFR 199
            E F       P++GIC G QL+           +     +   +    +   E +P   
Sbjct: 64  PEIFELG---VPVLGICYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGLPD-E 119

Query: 200 QSLLYSRAPIHVLQELATSHITHNWHMWCIT--PSNFTDNGLAKEWKVLSTNSNNRGLKF 257
           Q++  S                   H   +   P  F         KV++++ N      
Sbjct: 120 QTVWMS-------------------HGDEVVKLPEGF---------KVIASSDNCP---- 147

Query: 258 ISSVEHKVYPFAGIQFHPE 276
           ++++ ++     G+QFHPE
Sbjct: 148 VAAIANEEKKIYGVQFHPE 166

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181

>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 16/73 (21%)

Query: 103 DIWQSLLKIEKILGQ-VNGVLIPGGGASF-YADDGYAKAGAM--IYKIAKEFNE--NRDY 156
           D+W S    + +LG+  +GV++PGG   F Y D  Y +AGA+  I  +  E  E   +  
Sbjct: 32  DVWHS----DLLLGRDFDGVVLPGG---FSYGD--YLRAGAIAAIAPVMDEVREFAEKGK 82

Query: 157 FPIMGICLGFQLL 169
            P++GIC GFQ+L
Sbjct: 83  -PVLGICNGFQIL 94

Length = 231

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
           L   +G+++PGG  +           A++ + A          P++GICLG QLL
Sbjct: 44  LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAA------GKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 44/179 (24%)

Query: 103 DIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162
            + + L   + I      V+ PG G     +   A+   +I ++ +    N D  P++GI
Sbjct: 46  QLLELLPLFDAI------VVGPGPG-----NPNNAQDMGIISELWE--LANLDEVPVLGI 92

Query: 163 CLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYS-----RAPIHVLQELAT 217
           CLGFQ L               C  +   +  +P+ +   +Y       A    L  +  
Sbjct: 93  CLGFQSL---------------CLAQGADISRLPTPKHGQVYEMHTNDAAIFCGLFSV-K 136

Query: 218 SHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
           S   H+ +          D  L     +            + S + K  P+ G+Q+HPE
Sbjct: 137 STRYHSLYANPEGI----DTLLP--LCLTEDEEGI----ILMSAQTKKKPWFGVQYHPE 185

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742

>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 30/135 (22%), Positives = 41/135 (30%), Gaps = 47/135 (34%)

Query: 155 DYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIH---- 210
            Y PI+G+CLG Q + Y                          F   ++ +  P+H    
Sbjct: 71  PYIPILGVCLGHQSIGYL-------------------------FGGKIIKAPKPMHGKTS 105

Query: 211 --------VLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVE 262
                   + Q L        +H   I P N         W       +      I +  
Sbjct: 106 KIYHNHDDLFQGLPNPFTATRYHSLIIDPLNLPSPLEITAW-----TEDG----LIMACR 156

Query: 263 HKVYPFA-GIQFHPE 276
           HK Y    GIQFHPE
Sbjct: 157 HKKYKMLRGIQFHPE 171

Length = 190

>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 55/196 (28%)

Query: 93  IAKEVSYREL--DIWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKE 149
           IA+ +    +  ++  +   +E+I      G+++ GG +S YA++   +A   I+++   
Sbjct: 14  IARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENAP-RADEKIFELGV- 71

Query: 150 FNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPI 209
                   P++GIC G QL+                    L  E   + ++   Y +A +
Sbjct: 72  --------PVLGICYGMQLMAKQ-----------------LGGEVGRAEKRE--YGKAEL 104

Query: 210 HVLQELATSHITHN-------W--HMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISS 260
            +L E     +          W  H   +         L + +KVL+T+ N      +++
Sbjct: 105 EILDE---DDLFRGLPDESTVWMSHGDKVK-------ELPEGFKVLATSDNCP----VAA 150

Query: 261 VEHKVYPFAGIQFHPE 276
           + H+  P  G+QFHPE
Sbjct: 151 MAHEEKPIYGVQFHPE 166

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188

>gnl|CDD|232926 TIGR00337, PyrG, CTP synthase

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 42/189 (22%), Positives = 64/189 (33%), Gaps = 47/189 (24%)

Query: 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL--Y 171
            L  V+G+L+PGG    + + G       I  I K   EN    P +GICLG QL +  +
Sbjct: 340 FLKGVDGILVPGG----FGERGVE---GKILAI-KYARENN--IPFLGICLGMQLAVIEF 389

Query: 172 TSN-------NENELRTRCDCFYENLALEFMPSF--------------RQSLLYSRAPIH 210
             N       N  E         +   ++ +P                   +L       
Sbjct: 390 ARNVLGLKGANSTEFDPET----KYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAF 445

Query: 211 VLQELATSHITHNWHMWCITPS---NFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP 267
            L      +  H  H + +         + GL     V  T+ + R ++ I   +H    
Sbjct: 446 KLYGKEEVYERHR-HRYEVNNEYREQLENKGL----IVSGTSPDGRLVEIIELPDHPF-- 498

Query: 268 FAGIQFHPE 276
           F   QFHPE
Sbjct: 499 FVACQFHPE 507

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7) [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 525

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 89  MIYKIAKEVSYRELDIWQSLLKIEKI-LGQVNGVLIPGGGASFYADDGYAKA-GAMIYKI 146
           +I +  +E+ Y   +I       E++ L   +G++I GG  S Y +D +      +I   
Sbjct: 16  LIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDA 75

Query: 147 AKEFNENRDYFPIMGICLGFQLL 169
                      P++GICLG QLL
Sbjct: 76  GVP------GKPVLGICLGHQLL 92

Length = 198

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 39/156 (25%), Positives = 53/156 (33%), Gaps = 61/156 (39%)

Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL----EFMPSFRQSLLYSRAPIHVLQ 213
           PI GICLG QLL                    LAL      M          R   H ++
Sbjct: 71  PIFGICLGHQLL-------------------ALALGAKTYKMK------FGHRGSNHPVK 105

Query: 214 ELATSHI---THNWHMWCITPSNFTDNGLAKEWKVLSTNSN---NRGLKFISSVEHKVYP 267
           +L T  +   + N H + + P +     L    +V   N N     G++      HK  P
Sbjct: 106 DLITGRVYITSQN-HGYAVDPDS-----LPGGLEVTHVNLNDGTVEGIR------HKDLP 153

Query: 268 FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFD 303
              +QFHPE +          PH      +  Y FD
Sbjct: 154 VFSVQFHPEASP--------GPH------DTEYLFD 175

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 36/177 (20%)

Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGA--MIYKIAKEFNENRDYFPIMGICLGFQLLL 170
           + + + + +++PG GA        A      +I  I +     +   P +GICLG QL L
Sbjct: 35  EEILKADKLILPGVGA---FGAAMANLRERGLIEAIKEAVESGK---PFLGICLGMQL-L 87

Query: 171 YTSNNENELRTRCDCFYENLALEFMPSFRQSL-------LYSRAPIHVLQELAT-SHI-- 220
           +  + E             +     P+    +       +       + + +   ++   
Sbjct: 88  FERSEEGGGVKGLGLIPGKV--VRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYF 145

Query: 221 THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
            H++++    P             V +T+    G  F ++V        G QFHPEK
Sbjct: 146 VHSYYVPPGNPET----------VVATTD---YGEPFPAAVAKD--NVFGTQFHPEK 187

Length = 204

>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 30/138 (21%)

Query: 154 RDYF----PIMGICLGFQLLLYTSNNENE-------LRTRCDCFYENLALEFMPSFRQSL 202
           R+Y     P +GICLG QLL + S+ EN        +      F  +  L  +P    + 
Sbjct: 73  REYIQNDRPFLGICLGLQLL-FESSEENGPVEGLGVIPGVVGRFDSSNGLR-VPHIGWNA 130

Query: 203 LYSRAPIHVLQELATSHI--THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISS 260
           L       +L  +   H+   H++     TPS+  +N   K+W VL+T   N G +FI+S
Sbjct: 131 LQITKDSELLDGVGGRHVYFVHSYR---ATPSD--EN---KDW-VLATC--NYGGEFIAS 179

Query: 261 VEH-KVYPFAGIQFHPEK 277
           V    V+    +QFHPEK
Sbjct: 180 VRKGNVH---AVQFHPEK 194

Length = 538

>gnl|CDD|235140 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I; Provisional

 Score = 38.9 bits (92), Expect = 0.002
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 13/62 (20%)

Query: 115 LGQVNGVLIPGGGASF-YADDGYAKAGAM-----IYKIAKEFNENRDYFPIMGICLGFQL 168
           L  V+ V++PGG   F Y D  Y + GA+     I K  KEF E     P++GIC GFQ+
Sbjct: 39  LDGVDAVVLPGG---FSYGD--YLRCGAIAAFSPIMKAVKEFAE--KGKPVLGICNGFQI 91

Query: 169 LL 170
           L 
Sbjct: 92  LT 93

Length = 219

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 43/130 (33%)

Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT 217
           PI+G+CLG Q +              + F   +              ++ P+H      T
Sbjct: 76  PILGVCLGHQAI-------------AEAFGGKVV------------RAKEPMHG----KT 106

Query: 218 SHITHNWH-MWCITPSNFT----------DNGLAKEWKVLSTNSNNRGLKFISSVEHKVY 266
           S ITH+   ++   P+ FT             L +E +V + + +      I +V HK  
Sbjct: 107 SIITHDGSGLFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDG---GVIMAVRHKKL 163

Query: 267 PFAGIQFHPE 276
           P  G+QFHPE
Sbjct: 164 PIYGVQFHPE 173

Length = 191

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 55/153 (35%)

Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL----EFMPSFRQSLLYSRAPIHVLQ 213
           PI GICLG QLL                    LAL      M  F       R   H ++
Sbjct: 252 PIFGICLGHQLL-------------------ALALGAKTYKMK-FGH-----RGANHPVK 286

Query: 214 ELATSHI---THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270
           +L T  +   + N H + +   +     L +  KV   N N+     +  + HK  P   
Sbjct: 287 DLDTGRVYITSQN-HGYAVDEDS-----LVETLKVTHVNLND---GTVEGIRHKDLPAFS 337

Query: 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFD 303
           +Q+HPE +          PH      + RY FD
Sbjct: 338 VQYHPEASP--------GPH------DTRYLFD 356

Length = 368

>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 29/131 (22%)

Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSL-------LYSRAPIH 210
           P +GICLG QLL + S+ E    T+         + F  S    +       L       
Sbjct: 73  PFLGICLGMQLL-FESSEEGGG-TKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESP 130

Query: 211 VLQELATSHITHNW----HMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVY 266
           + + +       ++    H +   P +        ++ + +T+    G KF ++VE    
Sbjct: 131 LFKGI----PDGSYFYFVHSYYAPPDD-------PDYILATTD---YGGKFPAAVEKD-- 174

Query: 267 PFAGIQFHPEK 277
              G QFHPEK
Sbjct: 175 NIFGTQFHPEK 185

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 198

>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 27/121 (22%)

Query: 159 IMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFR---QSLLYSRAPIHVLQEL 215
           I+G+CLG Q L               C +    L  + + R   Q  L  R+   +   L
Sbjct: 75  ILGVCLGHQTL---------------CEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGL 119

Query: 216 ATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHP 275
                   +H W ++  NF         ++ +    N     + +++HK  P  G+QFHP
Sbjct: 120 PEEFNIGLYHSWAVSEENFPT-----PLEITAVCDEN----VVMAMQHKTLPIYGVQFHP 170

Query: 276 E 276
           E
Sbjct: 171 E 171

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	100.0
KOG1559|consensus	340		100.0
COG2071	243	Predicted glutamine amidotransferases [General fun	100.0
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	100.0
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	100.0
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.96
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.95
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.95
PRK05670	189	anthranilate synthase component II; Provisional	99.95
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.95
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.95
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.95
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.95
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.95
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.94
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.94
PRK05637	208	anthranilate synthase component II; Provisional	99.94
PLN02335	222	anthranilate synthase	99.94
PRK06895	190	putative anthranilate synthase component II; Provi	99.94
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.94
PRK00758	184	GMP synthase subunit A; Validated	99.94
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.94
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.94
CHL00101	190	trpG anthranilate synthase component 2	99.94
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.94
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.93
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.93
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.93
PLN02347	536	GMP synthetase	99.93
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.92
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.92
PRK00074	511	guaA GMP synthase; Reviewed	99.92
PRK09065	237	glutamine amidotransferase; Provisional	99.92
PRK07567	242	glutamine amidotransferase; Provisional	99.92
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.91
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.91
PRK13566	720	anthranilate synthase; Provisional	99.91
PRK05665	240	amidotransferase; Provisional	99.91
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.91
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.9
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.9
PRK06490	239	glutamine amidotransferase; Provisional	99.9
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.9
PRK07053	234	glutamine amidotransferase; Provisional	99.89
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.89
PRK08250	235	glutamine amidotransferase; Provisional	99.89
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.89
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.88
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.88
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.88
KOG3179|consensus	245		99.88
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.87
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.87
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.87
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.87
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.87
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.86
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.86
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.86
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	99.86
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.85
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.84
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.84
PRK06186	229	hypothetical protein; Validated	99.84
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.83
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.83
PRK05380	533	pyrG CTP synthetase; Validated	99.83
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.8
KOG0026|consensus	223		99.8
PLN02327	557	CTP synthase	99.79
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	99.78
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.76
KOG1224|consensus	767		99.72
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	99.7
KOG1622|consensus	552		99.7
KOG0370|consensus	1435		99.68
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	99.68
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.67
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	99.61
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.6
KOG0623|consensus	541		99.58
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.58
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	99.57
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.55
KOG2387|consensus	585		99.47
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.33
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	99.32
KOG3210|consensus	226		99.21
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	99.03
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.83
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.8
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.78
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.76
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.7
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.58
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	98.49
PHA03366	1304	FGAM-synthase; Provisional	98.47
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	98.42
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.4
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.36
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.25
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.18
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	98.15
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	98.13
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	98.1
TIGR00313	475	cobQ cobyric acid synthase CobQ.	98.06
PRK00784	488	cobyric acid synthase; Provisional	98.03
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	97.98
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.91
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	97.57
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	97.48
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	97.24
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	97.11
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	97.05
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	96.95
KOG1907|consensus	1320		96.89
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	96.8
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	96.69
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	96.65
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.58
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	96.58
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	96.53
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	96.42
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	96.36
COG3442	250	Predicted glutamine amidotransferase [General func	96.36
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	96.31
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	96.16
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	96.14
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	95.98
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	95.93
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	95.89
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	95.89
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	95.82
PRK04155	287	chaperone protein HchA; Provisional	95.8
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	95.63
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	95.62
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	95.55
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	95.53
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	95.36
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	95.29
PRK11249	752	katE hydroperoxidase II; Provisional	95.09
KOG2764|consensus	247		94.69
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	94.5
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	94.33
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	94.17
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	93.73
COG4090	154	Uncharacterized protein conserved in archaea [Func	84.66
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	80.8

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=100.00  E-value=3.6e-53  Score=391.69  Aligned_cols=271  Identities=44%  Similarity=0.747  Sum_probs=232.1

Q ss_pred             EEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047          9 IGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG   87 (350)
Q Consensus         9 Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~   87 (350)
                      |||+|++..   ...+.+. ++|++++|+++|+++|+++++|+++.+.+.++++|+.+||||+|||++|+++..      
T Consensus         1 igil~~~~~---~~~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~------   71 (273)
T cd01747           1 IGILTQPVD---GAGSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSG------   71 (273)
T ss_pred             CeEEeeecC---ccccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccc------
Confidence            899999974   2222334 899999999999999999999999877788899999999999999998875211      


Q ss_pred             eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047         88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ  167 (350)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q  167 (350)
                                                                      |.+..+.+++.+.+.+++|+++||||||+|||
T Consensus        72 ------------------------------------------------~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~Q  103 (273)
T cd01747          72 ------------------------------------------------YARTAKIIYNLALERNDAGDYFPVWGTCLGFE  103 (273)
T ss_pred             ------------------------------------------------cchHHHHHHHHHHHhhhcCCCCcEEEEcHHHH
Confidence                                                            11112258888999988888899999999999


Q ss_pred             HHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccc-cccccceEE
Q psy14047        168 LLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLAKEWKVL  246 (350)
Q Consensus       168 lLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~-~L~~~~~vl  246 (350)
                      +|+.++||++..+...+.++...|+++++....++||+.++..+.+.+.+...++++|++++.+.++..+ .|...++++
T Consensus       104 lL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vl  183 (273)
T cd01747         104 LLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVL  183 (273)
T ss_pred             HHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEE
Confidence            9999999975434555666777888887766778999999999988888888999999999987766543 577788999


Q ss_pred             EEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHhh
Q psy14047        247 STNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAAL  326 (350)
Q Consensus       247 a~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~~~~~~l  326 (350)
                      |++.++++.+||++++++++|+||+|||||++.+||.....++|+.++++.++++.++|+++||+|.|+|.+.+++.++|
T Consensus       184 a~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~~~f~~~~~~~~~l  263 (273)
T cd01747         184 TTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSNNRFESAEEETKHL  263 (273)
T ss_pred             EEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Confidence            99744457889999999999999999999999999998878999999999999999999999999999999999999999


Q ss_pred             hhcccceeee
Q psy14047        327 IYNYCPEYTA  336 (350)
Q Consensus       327 ~~n~~~~~~~  336 (350)
                      ||||+|+||+
T Consensus       264 Iyn~~p~~~~  273 (273)
T cd01747         264 IYNYKPTYTG  273 (273)
T ss_pred             hccCCCccCC
Confidence            9999999874

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>KOG1559|consensus

Probab=100.00  E-value=2.6e-53  Score=368.91  Aligned_cols=287  Identities=36%  Similarity=0.610  Sum_probs=246.8

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCC-c-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047          4 TERPIIGILTQEPCLGVDKHFAD-F-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD   81 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~-~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~   81 (350)
                      +-||+|||+++++.. +.+.+.. . .+||+++||+.+|.+||+|+++.++++++.+.++|..++||+||||-  ..   
T Consensus        50 nykPvIGIL~hpg~g-~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGw--ak---  123 (340)
T KOG1559|consen   50 NYKPVIGILSHPGDG-ASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGW--AK---  123 (340)
T ss_pred             ccCceeEEeccCCCC-ccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcc--cc---
Confidence            458999999999763 3333333 3 89999999999999999999999999999999999999999999994  21   


Q ss_pred             cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEE
Q psy14047         82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMG  161 (350)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlG  161 (350)
                                                                         ...|.+..+.++..+.+.+++|+++||+|
T Consensus       124 ---------------------------------------------------~~dY~~vvkkifnk~le~nDaGehFPvyg  152 (340)
T KOG1559|consen  124 ---------------------------------------------------RGDYFEVVKKIFNKVLERNDAGEHFPVYG  152 (340)
T ss_pred             ---------------------------------------------------cccHHHHHHHHHHHHHhccCCccccchhh
Confidence                                                               12344444568899999999999999999


Q ss_pred             ehHHHHHHHHHhcCccccCCccCceeeeeeceeec-CCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccc-cc
Q psy14047        162 ICLGFQLLLYTSNNENELRTRCDCFYENLALEFMP-SFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GL  239 (350)
Q Consensus       162 IC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~-~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~-~L  239 (350)
                      ||+||.+|.....-+-..+...+......+++++. ....+.+|+++|.++..++..+..+...|.+++.+.+|+.+ .|
T Consensus       153 ~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~L  232 (340)
T KOG1559|consen  153 ICLGFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPAL  232 (340)
T ss_pred             hhhhHHHHHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHH
Confidence            99999999988763323355556555667777765 33467899999999999999999999999999999999988 89


Q ss_pred             cccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCH
Q psy14047        240 AKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETE  319 (350)
Q Consensus       240 ~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~  319 (350)
                      .+.|.|+.++.+.+..+||..++.+++||+|+|||||+.++||.+.. +||+.++++..++..++||++||++.|+++|+
T Consensus       233 s~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~-IpHsedAiqvtqhaA~~lVsEARKs~nrp~Se  311 (340)
T KOG1559|consen  233 SSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSD-IPHSEDAIQVTQHAANYLVSEARKSLNRPESE  311 (340)
T ss_pred             HHHHhheeeecCCCceEEEEeecceeccceeeeecCccCccccccCC-CCCChhHHHHHHHHHHHHHHHHHhhcCCccHH
Confidence            99999999985555778999999999999999999999999999854 99999999999999999999999999999997


Q ss_pred             HHHHHhhhhcccceeeeccCCCCceEEeecC
Q psy14047        320 EEEKAALIYNYCPEYTAYIPGIGYDQTYLFK  350 (350)
Q Consensus       320 ~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~~  350 (350)
                       ++.+.|||||+|+|+|+- +++|||||+|.
T Consensus       312 -kvlsnLIYnykPtY~Gy~-gsg~devYIFt  340 (340)
T KOG1559|consen  312 -KVLSNLIYNYKPTYCGYA-GSGYDEVYIFT  340 (340)
T ss_pred             -HHHHHHHhccCcceeccc-cCccceEEeeC
Confidence             557779999999999987 79999999995

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=100.00  E-value=7.3e-39  Score=282.12  Aligned_cols=229  Identities=20%  Similarity=0.189  Sum_probs=167.9

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDG   82 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~   82 (350)
                      |+||+|||++.....  ...+.+. ++|+...|++++..+|+.|+.||...+.+.+..+++.+|||++||| .||+|..|
T Consensus         1 ~~kpvIGIt~~~~~~--~~~~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~~Y   77 (243)
T COG2071           1 MSKPVIGITADLIQE--IVGFDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPSLY   77 (243)
T ss_pred             CCCCEEEEecchhcc--ccccCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHHHc
Confidence            579999999987652  2335556 9999999999999999999999987788899999999999999999 59999999


Q ss_pred             ccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047         83 YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI  162 (350)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI  162 (350)
                      +++|.+..+                                    .+.+++|.++.   .|++   ++.++|  +|||||
T Consensus        78 Gee~~~~~~------------------------------------~~~p~RD~~E~---aLi~---~ALe~~--iPILgI  113 (243)
T COG2071          78 GEEPSEKDG------------------------------------PYDPERDAFEL---ALIR---AALERG--IPILGI  113 (243)
T ss_pred             CCCCCcccC------------------------------------CCCccccHHHH---HHHH---HHHHcC--CCEEEE
Confidence            888875532                                    12333566654   2444   444455  999999


Q ss_pred             hHHHHHHHHHhcCccccCCccC------ceeeeeec----eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecC
Q psy14047        163 CLGFQLLLYTSNNENELRTRCD------CFYENLAL----EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPS  232 (350)
Q Consensus       163 C~G~QlLa~a~Gg~v~~~~~~~------~~~~~~~i----~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~  232 (350)
                      |+|+|+|++++||++.  +...      .|....+.    +.+....++.|.+.+...       ...|+++|++++.  
T Consensus       114 CRG~QllNVa~GGtL~--q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~-------~~~VNS~HhQaIk--  182 (243)
T COG2071         114 CRGLQLLNVALGGTLY--QDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGES-------EFMVNSFHHQAIK--  182 (243)
T ss_pred             ccchHHHHHHhcCeee--hhhhcccccccccCCCCcccceeEEEecCCccHHHhcCcc-------ceeecchHHHHHH--
Confidence            9999999999999863  2221      11110011    112222344443332211       1479999999998  


Q ss_pred             CCccccccccceEEEEeecCCCceEEEEEEcCC-ccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        233 NFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKV-YPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       233 ~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~-~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                           +|++++++.|++ +|+.   ||||++++ ..++|||||||+...+   .          ..++.||+.|+++|+.
T Consensus       183 -----~La~~L~V~A~a-~DG~---VEAie~~~~~fvlGVQWHPE~~~~~---~----------~~~~~LFe~F~~~~~~  240 (243)
T COG2071         183 -----KLAPGLVVEARA-PDGT---VEAVEVKNDAFVLGVQWHPEYLVDT---N----------PLSLALFEAFVNACKK  240 (243)
T ss_pred             -----HhCCCcEEEEEC-CCCc---EEEEEecCCceEEEEecChhhhccC---C----------hHHHHHHHHHHHHHHh
Confidence                 999999999997 5665   89999986 4468999999965321   1          2478999999999987


Q ss_pred             C
Q psy14047        312 S  312 (350)
Q Consensus       312 ~  312 (350)
                      .
T Consensus       241 ~  241 (243)
T COG2071         241 H  241 (243)
T ss_pred             h
Confidence            5

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.3e-37  Score=277.86  Aligned_cols=205  Identities=27%  Similarity=0.390  Sum_probs=125.8

Q ss_pred             CEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047          7 PIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK   85 (350)
Q Consensus         7 p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~   85 (350)
                      |+|||++++... ....+... ++|++++|+++++++|++|++||+..+.+.++.+++++|||+||||..||+|..|++.
T Consensus         1 PvIGI~~~~~~~-~~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~   79 (217)
T PF07722_consen    1 PVIGITAQPSES-DSSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEE   79 (217)
T ss_dssp             -EEEEE-EE-----SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT--
T ss_pred             CEEEEeCCcccc-ccCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCc
Confidence            899999998531 12222333 8999999999999999999999999999999999999999999999999998777765


Q ss_pred             cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047         86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG  165 (350)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G  165 (350)
                      +.+...                                            +....+.+++++...++.+.++||||||+|
T Consensus        80 ~~~~~~--------------------------------------------~~~~~rd~~e~~l~~~a~~~~~PilGICrG  115 (217)
T PF07722_consen   80 PSPESG--------------------------------------------YIDPERDIFELALIRNALGRGKPILGICRG  115 (217)
T ss_dssp             -BTTSH--------------------------------------------HHHHHHHHHHHHHHHHHCCTT--EEEETHH
T ss_pred             ccccCC--------------------------------------------CcCHHHHHHHHHHHHHHHhcCCCEEEEcHH
Confidence            542110                                            000011233444444444455999999999


Q ss_pred             HHHHHHHhcCccccCCccCc----eeee-----eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047        166 FQLLLYTSNNENELRTRCDC----FYEN-----LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD  236 (350)
Q Consensus       166 ~QlLa~a~Gg~v~~~~~~~~----~~~~-----~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~  236 (350)
                      ||+|++++||++.  .+...    ....     .+.+.+....++.|.+.+.       .+...|+++|++++.      
T Consensus       116 ~Q~lnv~~GGtl~--q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~-------~~~~~vns~Hhq~v~------  180 (217)
T PF07722_consen  116 MQLLNVAFGGTLY--QDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILG-------SEEIEVNSFHHQAVK------  180 (217)
T ss_dssp             HHHHHHHCCSSEE--SCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSH-------HCTEEEEEEECEEEC------
T ss_pred             HHHHHHHhCCCce--eecccCcCcccccccccccccccceeccCchHHHHhC-------cCcceeecchhhhhh------
Confidence            9999999999863  22221    1000     0111111122333322221       034579999999998      


Q ss_pred             ccccccceEEEEeecCCCceEEEEEEcCC--ccEEEEcccCC
Q psy14047        237 NGLAKEWKVLSTNSNNRGLKFISSVEHKV--YPFAGIQFHPE  276 (350)
Q Consensus       237 ~~L~~~~~vla~s~~~~~~e~v~ai~~~~--~~i~gvQfHPE  276 (350)
                       .|+++++++|++ .|+.   +++|+..+  ++++|+|||||
T Consensus       181 -~l~~~l~v~A~s-~Dg~---iEaie~~~~~~~~~GvQwHPE  217 (217)
T PF07722_consen  181 -PLGEGLRVTARS-PDGV---IEAIESPEHKYPILGVQWHPE  217 (217)
T ss_dssp             -CHHCCEEEEEEE-CTSS---EEEEEECCESS-EEEESS-CC
T ss_pred             -ccCCCceEEEEe-cCCc---EEEEEEcCCCCCEEEEEeCCC
Confidence             899999999998 6776   66666666  46999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=100.00  E-value=1.2e-35  Score=272.60  Aligned_cols=227  Identities=18%  Similarity=0.247  Sum_probs=153.2

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDG   82 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~   82 (350)
                      |.||+|||+++....   .  ....+++...|+++++++|+.|+.||... +.+.++++++.+|||||+||+.||+|..|
T Consensus         5 m~~P~Igi~~~~~~~---~--~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~y   79 (254)
T PRK11366          5 MNNPVIGVVMCRNRL---K--GHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLY   79 (254)
T ss_pred             CCCCEEEEeCCCccc---C--cchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhc
Confidence            578999999865321   1  11267799999999999999999999754 35677788899999999999889998777


Q ss_pred             ccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047         83 YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI  162 (350)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI  162 (350)
                      ++.+.+-+                                      ....++.+      .+++++.+.+++  +|||||
T Consensus        80 g~~~~~~~--------------------------------------~~~~rD~~------e~~li~~a~~~~--~PILGI  113 (254)
T PRK11366         80 GENGDEPD--------------------------------------ADPGRDLL------SMALINAALERR--IPIFAI  113 (254)
T ss_pred             CCCCCCCC--------------------------------------CChhHHHH------HHHHHHHHHHCC--CCEEEE
Confidence            65442110                                      00112222      334455555555  999999


Q ss_pred             hHHHHHHHHHhcCccccCCc--cC---ceeee---------eeceeecCCCCCcccccCCchhHHhhcccceEEEeecce
Q psy14047        163 CLGFQLLLYTSNNENELRTR--CD---CFYEN---------LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC  228 (350)
Q Consensus       163 C~G~QlLa~a~Gg~v~~~~~--~~---~~~~~---------~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~  228 (350)
                      |+|||+|++++||++. ...  ..   .+...         .+.+.+....++.+...++.      .....|+++|+++
T Consensus       114 CrG~Qllnva~GGtl~-~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~------~~~~~Vns~H~q~  186 (254)
T PRK11366        114 CRGLQELVVATGGSLH-RKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPE------CSNFWVNSLHGQG  186 (254)
T ss_pred             CHhHHHHHHHhCCeEe-ecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCC------CceEEeehHHHHH
Confidence            9999999999999974 211  00   01100         01111111112221111110      0123689999999


Q ss_pred             eecCCCccccccccceEEEEeecCCCceEEEEEEcCCccE-EEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        229 ITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPF-AGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       229 v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i-~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      |.       .||++++++|++ +++.   ++||+++++++ +|||||||+...+.             ...+.+|++|++
T Consensus       187 V~-------~l~~gl~v~A~s-~dg~---ieAie~~~~~~~~GVQwHPE~~~~~~-------------~~~~~lf~~fv~  242 (254)
T PRK11366        187 AK-------VVSPRLRVEARS-PDGL---VEAVSVINHPFALGVQWHPEWNSSEY-------------ALSRILFEGFIT  242 (254)
T ss_pred             Hh-------hcccceEEEEEc-CCCc---EEEEEeCCCCCEEEEEeCCCcCCCCC-------------chHHHHHHHHHH
Confidence            97       899999999996 6655   99999998885 99999999774321             124789999999


Q ss_pred             HHHcC
Q psy14047        308 QASGS  312 (350)
Q Consensus       308 ~~~~~  312 (350)
                      +|+..
T Consensus       243 ~~~~~  247 (254)
T PRK11366        243 ACQHH  247 (254)
T ss_pred             HHHHH
Confidence            99753

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.96  E-value=1.6e-28  Score=216.32  Aligned_cols=188  Identities=23%  Similarity=0.255  Sum_probs=136.4

Q ss_pred             EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccce
Q psy14047          9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGA   88 (350)
Q Consensus         9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~   88 (350)
                      |||+++...   ........+++..+++++|+.+|+.++++|...+.+.+...++.+||||||||+ +..|..|++.+.+
T Consensus         1 ~gi~~~~~~---~~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~-~~~~~~~~~~~~~   76 (189)
T cd01745           1 IGITARLRE---EEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGG-DVDPPLYGEEPHP   76 (189)
T ss_pred             CEEcCcccc---ccCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCC-CCChhhcCCCCCc
Confidence            689998764   222222378999999999999999999999988777777778999999999999 4554444332211


Q ss_pred             eeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047         89 MIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL  168 (350)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql  168 (350)
                      ..                                    .......+.      ...+.++++.+.+  +||||||+|||+
T Consensus        77 ~~------------------------------------~~~~~~r~~------~~~~~~~~~~~~~--~PilgiC~G~Q~  112 (189)
T cd01745          77 EL------------------------------------GPIDPERDA------FELALLRAALERG--KPILGICRGMQL  112 (189)
T ss_pred             cc------------------------------------CCCChhHHH------HHHHHHHHHHHCC--CCEEEEcchHHH
Confidence            10                                    000000111      1345566666666  999999999999


Q ss_pred             HHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEE
Q psy14047        169 LLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLST  248 (350)
Q Consensus       169 La~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~  248 (350)
                      |+.++||++. ...                                     .++.+|++.+.       .+|++++++|+
T Consensus       113 l~~~~Gg~v~-~~~-------------------------------------~v~~~H~~~v~-------~~~~~~~vla~  147 (189)
T cd01745         113 LNVALGGTLY-QDI-------------------------------------RVNSLHHQAIK-------RLADGLRVEAR  147 (189)
T ss_pred             HHHHhCCeEE-cCC-------------------------------------ceechHHHHHh-------hcCCCCEEEEE
Confidence            9999999863 111                                     16789999997       78999999999


Q ss_pred             eecCCCceEEEEEEcCC-ccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047        249 NSNNRGLKFISSVEHKV-YPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV  306 (350)
Q Consensus       249 s~~~~~~e~v~ai~~~~-~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv  306 (350)
                      + +++.   ++++++++ .+++|+|||||+.....             ..++.+|+.|+
T Consensus       148 ~-~d~~---vea~~~~~~~~~~gvQfHPE~~~~~~-------------~~~~~if~~f~  189 (189)
T cd01745         148 A-PDGV---IEAIESPDRPFVLGVQWHPEWLADTD-------------PDSLKLFEAFV  189 (189)
T ss_pred             C-CCCc---EEEEEeCCCCeEEEEecCCCcCcccC-------------chHhHHHHHhC
Confidence            6 5554   99999987 68999999999875310             24778888874

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.95  E-value=3.8e-27  Score=207.46  Aligned_cols=174  Identities=24%  Similarity=0.350  Sum_probs=126.8

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...++++++.|+++..+|++.+.+++..+  .+|||+||||+.+...                                 
T Consensus        12 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~~~~~---------------------------------   56 (188)
T TIGR00888        12 QLIARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPSSVYA---------------------------------   56 (188)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCCCcCc---------------------------------
Confidence            56678999999999999998876666542  3679999999864320                                 


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          ....     .++   ++..+++  +||||||+|||+|+.++||++. ..... +....++
T Consensus        57 --------------------~~~~-----~~i---~~~~~~~--~PilGIC~G~Qll~~~lgg~v~-~~~~~-~~g~~~v  104 (188)
T TIGR00888        57 --------------------ENAP-----RAD---EKIFELG--VPVLGICYGMQLMAKQLGGEVG-RAEKR-EYGKAEL  104 (188)
T ss_pred             --------------------CCch-----HHH---HHHHhCC--CCEEEECHHHHHHHHhcCceEe-cCCCc-cceeEEE
Confidence                                0000     122   3333344  9999999999999999999874 22222 2234455


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..+.   .+++|..++..+        .++.+|++++.       .||++++++|++ +++   .++++++++.|+||+|
T Consensus       105 ~~~~---~~~l~~~~~~~~--------~~~~~H~~~v~-------~l~~~~~vla~~-~~~---~v~a~~~~~~~~~g~Q  162 (188)
T TIGR00888       105 EILD---EDDLFRGLPDES--------TVWMSHGDKVK-------ELPEGFKVLATS-DNC---PVAAMAHEEKPIYGVQ  162 (188)
T ss_pred             EEec---CCHhhcCCCCCc--------EEEeEccceee-------cCCCCCEEEEEC-CCC---CeEEEEECCCCEEEEe
Confidence            4432   456887776543        68999999997       799999999996 544   3899999988999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH-HHH
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS-QAS  310 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~-~~~  310 (350)
                      ||||++...               .+..|+++|++ .|+
T Consensus       163 fHPE~~~~~---------------~g~~i~~~f~~~~~~  186 (188)
T TIGR00888       163 FHPEVTHTE---------------YGNELLENFVYDVCG  186 (188)
T ss_pred             eCCccCCCh---------------hhHHHHHHHHHHhhC
Confidence            999987531               37889999999 665

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.95  E-value=4.3e-27  Score=206.44  Aligned_cols=171  Identities=19%  Similarity=0.250  Sum_probs=124.7

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ..++++|+++|.++.+++++.+.+.+.+ ++.+||||++||+.+..                                  
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~~~~----------------------------------   56 (184)
T cd01743          12 YNLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPGHPE----------------------------------   56 (184)
T ss_pred             HHHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCCCcc----------------------------------
Confidence            5688999999999999999877655434 47899999998885431                                  


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          .+.       ....+++..+++  +||||||+|||+|+.++||++. .......+...++
T Consensus        57 --------------------~~~-------~~~~i~~~~~~~--~PvlGIC~G~Qlla~~~Gg~v~-~~~~~~~g~~~~v  106 (184)
T cd01743          57 --------------------DAG-------ISLEIIRALAGK--VPILGVCLGHQAIAEAFGGKVV-RAPEPMHGKTSEI  106 (184)
T ss_pred             --------------------cch-------hHHHHHHHHhcC--CCEEEECHhHHHHHHHhCCEEE-eCCCCCcCceeEE
Confidence                                011       112222333344  9999999999999999999975 3443344444454


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccccc--ceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE--WKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~--~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ...    .+.+|..++..+        .++++|++++.       .++.+  ++++|++ +++   .+++++++++|+||
T Consensus       107 ~~~----~~~~~~~~~~~~--------~~~~~H~~~v~-------~~~~~~~~~~la~~-~~~---~v~a~~~~~~~i~g  163 (184)
T cd01743         107 HHD----GSGLFKGLPQPF--------TVGRYHSLVVD-------PDPLPDLLEVTAST-EDG---VIMALRHRDLPIYG  163 (184)
T ss_pred             EEC----CCccccCCCCCc--------EEEeCcEEEEe-------cCCCCceEEEEEeC-CCC---eEEEEEeCCCCEEE
Confidence            432    355777766543        69999999997       55655  9999986 444   59999999989999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV  306 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv  306 (350)
                      +|||||+..++|               +..|+++|+
T Consensus       164 vQfHPE~~~~~~---------------g~~l~~~f~  184 (184)
T cd01743         164 VQFHPESILTEY---------------GLRLLENFL  184 (184)
T ss_pred             EeeCCCcCCCcc---------------hHHHHHhhC
Confidence            999999988776               567888873

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.95  E-value=4e-27  Score=207.45  Aligned_cols=177  Identities=19%  Similarity=0.275  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         32 PASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      ...++++|+++|..+.+++++. +.+.++. + ..||||++||+.+..  +                             
T Consensus        12 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~-~~dglIlsgGpg~~~--d-----------------------------   58 (189)
T PRK05670         12 TYNLVQYLGELGAEVVVYRNDEITLEEIEA-L-NPDAIVLSPGPGTPA--E-----------------------------   58 (189)
T ss_pred             HHHHHHHHHHCCCcEEEEECCCCCHHHHHh-C-CCCEEEEcCCCCChH--H-----------------------------
Confidence            3678899999999999999975 4444433 3 389999999986542  0                             


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                            ...       ..+++++ .+++  +||||||+|||+|+.++||++. ......++...
T Consensus        59 ----------------------~~~-------~~~~l~~-~~~~--~PvLGIClG~Qlla~alGg~v~-~~~~~~~g~~~  105 (189)
T PRK05670         59 ----------------------AGI-------SLELIRE-FAGK--VPILGVCLGHQAIGEAFGGKVV-RAKEIMHGKTS  105 (189)
T ss_pred             ----------------------cch-------HHHHHHH-hcCC--CCEEEECHHHHHHHHHhCCEEE-ecCCcccCcee
Confidence                                  001       1122222 2333  9999999999999999999975 33333334333


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ++.    ...+.+|..++..        ..++++|++.+...     .+|++++++|++ +++.   ++++++++.|+||
T Consensus       106 ~v~----~~~~~l~~~~~~~--------~~v~~~H~~~v~~~-----~lp~~~~~la~s-~~~~---i~a~~~~~~~~~g  164 (189)
T PRK05670        106 PIE----HDGSGIFAGLPNP--------FTVTRYHSLVVDRE-----SLPDCLEVTAWT-DDGE---IMGVRHKELPIYG  164 (189)
T ss_pred             EEE----eCCCchhccCCCC--------cEEEcchhheeccc-----cCCCceEEEEEe-CCCc---EEEEEECCCCEEE
Confidence            433    1245677776654        36999999999521     489999999997 5554   9999998889999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      +|||||+...               ..+..||+.|++.+|
T Consensus       165 vQfHPE~~~~---------------~~g~~i~~~F~~~~~  189 (189)
T PRK05670        165 VQFHPESILT---------------EHGHKLLENFLELAR  189 (189)
T ss_pred             EeeCCCcCCC---------------cchHHHHHHHHHhhC
Confidence            9999998642               137899999999864

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.95  E-value=7e-27  Score=209.42  Aligned_cols=182  Identities=19%  Similarity=0.265  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCH-HHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPE-AYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~-~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      ...++++|++.|..+..++++.+. +.+..+++.+|||||+||+.+..                                
T Consensus        13 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~--------------------------------   60 (214)
T PRK07765         13 VFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPE--------------------------------   60 (214)
T ss_pred             HHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChh--------------------------------
Confidence            456889999999999999998642 34444567899999999985421                                


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                            ....      ..++++++.+++  +||||||+|||+|+.++||++. ....+.++...
T Consensus        61 ----------------------~~~~------~~~~i~~~~~~~--~PiLGIC~G~Qlla~a~GG~v~-~~~~~~~g~~~  109 (214)
T PRK07765         61 ----------------------RAGA------SIDMVRACAAAG--TPLLGVCLGHQAIGVAFGATVD-RAPELLHGKTS  109 (214)
T ss_pred             ----------------------hcch------HHHHHHHHHhCC--CCEEEEccCHHHHHHHhCCEEe-eCCCCccCcee
Confidence                                  0111      224445545444  9999999999999999999975 33333344434


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ++...    .+.+|.+++..+        .++++|++.+.+.     .+|++++++|++ .++.   ++++++++.++||
T Consensus       110 ~v~~~----~~~~~~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~vla~s-~~~~---vqa~~~~~~~i~g  168 (214)
T PRK07765        110 SVHHT----GVGVLAGLPDPF--------TATRYHSLTILPE-----TLPAELEVTART-DSGV---IMAVRHRELPIHG  168 (214)
T ss_pred             EEEEC----CCccccCCCCcc--------EEEecchheEecc-----cCCCceEEEEEc-CCCc---EEEEEeCCCCEEE
Confidence            44332    223666655533        5899999999643     589999999997 5554   8999999888999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      +|||||+..++               .+..+...|+..|...
T Consensus       169 vQfHPE~~~t~---------------~g~~~l~~f~~~~~~~  195 (214)
T PRK07765        169 VQFHPESVLTE---------------GGHRMLANWLTVCGWA  195 (214)
T ss_pred             EeeCCCcccCc---------------chHHHHHHHHHHhccc
Confidence            99999986431               3667777888888554

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.95  E-value=1.2e-26  Score=198.88  Aligned_cols=144  Identities=24%  Similarity=0.451  Sum_probs=112.5

Q ss_pred             CCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeec
Q psy14047        118 VNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMP  196 (350)
Q Consensus       118 ~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~  196 (350)
                      +|+||+ ||+|.+.+.    .    ...+.++++ .  +++||||||+|||.|+.++||++. +...+.++....++.  
T Consensus        46 pd~iviSPGPG~P~d~----G----~~~~~i~~~-~--~~~PiLGVCLGHQai~~~fGg~V~-~a~~~~HGK~s~i~h--  111 (191)
T COG0512          46 PDAIVISPGPGTPKDA----G----ISLELIRRF-A--GRIPILGVCLGHQAIAEAFGGKVV-RAKEPMHGKTSIITH--  111 (191)
T ss_pred             CCEEEEcCCCCChHHc----c----hHHHHHHHh-c--CCCCEEEECccHHHHHHHhCCEEE-ecCCCcCCeeeeeec--
Confidence            466677 888776421    1    134555655 2  249999999999999999999986 666778887664432  


Q ss_pred             CCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCC
Q psy14047        197 SFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE  276 (350)
Q Consensus       197 ~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE  276 (350)
                        .++.+|+++|+++        .+..||+..+.+.     .+|+.++++|++ ++++  .|++++|+++|+||+|||||
T Consensus       112 --~g~~iF~glp~~f--------~v~RYHSLvv~~~-----~lP~~l~vtA~~-~d~~--~IMai~h~~~pi~gvQFHPE  173 (191)
T COG0512         112 --DGSGLFAGLPNPF--------TVTRYHSLVVDPE-----TLPEELEVTAES-EDGG--VIMAVRHKKLPIYGVQFHPE  173 (191)
T ss_pred             --CCcccccCCCCCC--------EEEeeEEEEecCC-----CCCCceEEEEEe-CCCC--EEEEEeeCCCCEEEEecCCc
Confidence              3578999999876        5999999999844     489999999997 5554  59999999999999999999


Q ss_pred             cCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        277 KNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       277 ~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      +..++.               +.++.++|++.
T Consensus       174 SilT~~---------------G~~il~Nfl~~  190 (191)
T COG0512         174 SILTEY---------------GHRILENFLRL  190 (191)
T ss_pred             cccccc---------------hHHHHHHHHhh
Confidence            987653               68899999875

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.95  E-value=1.2e-26  Score=203.78  Aligned_cols=173  Identities=17%  Similarity=0.246  Sum_probs=124.6

Q ss_pred             HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...+++|++.|+.+..++.+. +.+.+..  .+.||||++||+.+..  +                              
T Consensus        13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~--~------------------------------   58 (187)
T PRK08007         13 WNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPD--E------------------------------   58 (187)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChH--H------------------------------
Confidence            347788999999999999875 4444433  3689999999996532  0                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                            ...      ..+.++. .+++  +||||||+|||+|+.++||++. ....+.++...+
T Consensus        59 ----------------------~~~------~~~~~~~-~~~~--~PiLGIClG~Q~la~a~Gg~v~-~~~~~~~g~~~~  106 (187)
T PRK08007         59 ----------------------AGI------SLDVIRH-YAGR--LPILGVCLGHQAMAQAFGGKVV-RAAKVMHGKTSP  106 (187)
T ss_pred             ----------------------CCc------cHHHHHH-hcCC--CCEEEECHHHHHHHHHcCCEEE-eCCCcccCCceE
Confidence                                  011      1122222 2333  9999999999999999999985 344444554455


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +...    .+.+|.+++..        ..++++|++++.+.     .+|++++++|++ +++.   ++++++++.|+||+
T Consensus       107 v~~~----~~~l~~~~~~~--------~~v~~~H~~~v~~~-----~lp~~~~v~a~~-~~~~---i~a~~~~~~~i~Gv  165 (187)
T PRK08007        107 ITHN----GEGVFRGLANP--------LTVTRYHSLVVEPD-----SLPACFEVTAWS-ETRE---IMGIRHRQWDLEGV  165 (187)
T ss_pred             EEEC----CCCcccCCCCC--------cEEEEcchhEEccC-----CCCCCeEEEEEe-CCCc---EEEEEeCCCCEEEE
Confidence            5432    33477776554        36999999999533     589999999997 6555   89999999999999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      |||||+..++               .++.++++|++
T Consensus       166 QfHPE~~~t~---------------~G~~il~nFl~  186 (187)
T PRK08007        166 QFHPESILSE---------------QGHQLLANFLH  186 (187)
T ss_pred             EeCCcccCCc---------------chHHHHHHHhh
Confidence            9999987542               37889999975

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.95  E-value=2.6e-26  Score=201.97  Aligned_cols=175  Identities=18%  Similarity=0.238  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         32 PASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      ...++++|++.|+.+++++++. +.+.+.+  ..+|||+|+||+.+..  +                             
T Consensus        12 t~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~--~-----------------------------   58 (188)
T TIGR00566        12 TYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPN--E-----------------------------   58 (188)
T ss_pred             HHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChh--h-----------------------------
Confidence            3577889999999999999764 4555543  2589999999996542  0                             


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                             ....      .++++++ +++  +||||||+|||+|+.++||++. ......++...
T Consensus        59 -----------------------~~~~------~~~i~~~-~~~--~PvLGIC~G~Qll~~~~GG~v~-~~~~~~~g~~~  105 (188)
T TIGR00566        59 -----------------------AGIS------LEAIRHF-AGK--LPILGVCLGHQAMGQAFGGDVV-RANTVMHGKTS  105 (188)
T ss_pred             -----------------------cchh------HHHHHHh-ccC--CCEEEECHHHHHHHHHcCCEEe-eCCCccccceE
Confidence                                   0111      1223333 233  9999999999999999999985 33333445455


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ++...    .+.++.+++..        ..++++|++.+.+.     .+|++++++|++ .+++  .+++++++++|+||
T Consensus       106 ~v~~~----~~~~~~~l~~~--------~~v~~~H~~~v~~~-----~l~~~~~v~a~s-~~~~--~v~a~~~~~~~i~g  165 (188)
T TIGR00566       106 EIEHN----GAGIFRGLFNP--------LTATRYHSLVVEPE-----TLPTCFPVTAWE-EENI--EIMAIRHRDLPLEG  165 (188)
T ss_pred             EEEEC----CCccccCCCCC--------cEEEEcccceEecc-----cCCCceEEEEEc-CCCC--EEEEEEeCCCCEEE
Confidence            55432    23456655543        35899999999543     589999999996 5443  49999999999999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      +|||||+..++               .+..++++|+.
T Consensus       166 vQfHPE~~~t~---------------~G~~il~nfl~  187 (188)
T TIGR00566       166 VQFHPESILSE---------------QGHQLLANFLH  187 (188)
T ss_pred             EEeCCCccCCc---------------ccHHHHHHHHh
Confidence            99999987542               37889999975

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.95  E-value=3.2e-26  Score=202.32  Aligned_cols=178  Identities=15%  Similarity=0.190  Sum_probs=125.5

Q ss_pred             HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ..++++|+++|..+.+++++. +.+.+..  ...++|+++||+.++.  +                              
T Consensus        13 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~~~~--~------------------------------   58 (193)
T PRK08857         13 YNLYQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPCTPN--E------------------------------   58 (193)
T ss_pred             HHHHHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCCChH--H------------------------------
Confidence            458899999999999999874 4333322  2478999999986642  0                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                           .....    .+++.    .+++  +||||||+|||+|+.++||++. ......++...+
T Consensus        59 ---------------------~~~~~----~~i~~----~~~~--~PiLGIClG~Qlia~a~Gg~v~-~~~~~~~G~~~~  106 (193)
T PRK08857         59 ---------------------AGISL----QAIEH----FAGK--LPILGVCLGHQAIAQVFGGQVV-RARQVMHGKTSP  106 (193)
T ss_pred             ---------------------CcchH----HHHHH----hcCC--CCEEEEcHHHHHHHHHhCCEEE-eCCCceeCceEE
Confidence                                 00011    12222    2334  9999999999999999999975 333333333333


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeec-CCCceEEEEEEcCCccEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSN-NRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~-~~~~e~v~ai~~~~~~i~g  270 (350)
                      +..    ..+.+|.+++..+        .++++|++++.+.     .||++++++|++.. ++..+.++++++++.|+||
T Consensus       107 ~~~----~~~~l~~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~g  169 (193)
T PRK08857        107 IRH----TGRSVFKGLNNPL--------TVTRYHSLVVKND-----TLPECFELTAWTELEDGSMDEIMGFQHKTLPIEA  169 (193)
T ss_pred             EEE----CCCcccccCCCcc--------EEEEccEEEEEcC-----CCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEE
Confidence            332    1345777765543        6999999998533     58999999998721 4434579999999999999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      +|||||+..+++               +..|+++|++.
T Consensus       170 vQfHPE~~~t~~---------------g~~i~~nFl~~  192 (193)
T PRK08857        170 VQFHPESIKTEQ---------------GHQLLANFLAR  192 (193)
T ss_pred             EeeCCCcCCCcc---------------hHHHHHHHHhh
Confidence            999999986654               67899999864

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.94  E-value=3.6e-26  Score=199.48  Aligned_cols=168  Identities=21%  Similarity=0.326  Sum_probs=117.0

Q ss_pred             HHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHH
Q psy14047         34 SYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEK  113 (350)
Q Consensus        34 ~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (350)
                      .++++|+++|++++++|++.+.+.+.  ...+|||+++||+.+..                                   
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~~~~-----------------------------------   53 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPGDPA-----------------------------------   53 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCCChh-----------------------------------
Confidence            57999999999999999987655442  35789999999985431                                   


Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeece
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE  193 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~  193 (350)
                                         .  +.    ...++++++.+++  +||||||+|||+|+.++||++. ....+.++...++.
T Consensus        54 -------------------~--~~----~~~~~~~~~~~~~--~PvlGIC~G~Q~l~~~~Gg~v~-~~~~~~~g~~~~v~  105 (178)
T cd01744          54 -------------------L--LD----EAIKTVRKLLGKK--IPIFGICLGHQLLALALGAKTY-KMKFGHRGSNHPVK  105 (178)
T ss_pred             -------------------H--hH----HHHHHHHHHHhCC--CCEEEECHHHHHHHHHcCCcee-cCCCCCCCCceeeE
Confidence                               0  11    1334455555555  9999999999999999999974 22222233233332


Q ss_pred             eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047        194 FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQF  273 (350)
Q Consensus       194 ~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf  273 (350)
                      ...   ...               ...++++|++++.++     .+|++++++|++.+++.   ++++++++.|+||+||
T Consensus       106 ~~~---~~~---------------~~~v~~~H~~~v~~~-----~lp~~~~v~a~s~~~~~---i~a~~~~~~~i~GvQf  159 (178)
T cd01744         106 DLI---TGR---------------VYITSQNHGYAVDPD-----SLPGGLEVTHVNLNDGT---VEGIRHKDLPVFSVQF  159 (178)
T ss_pred             EcC---CCC---------------cEEEEcCceEEEccc-----ccCCceEEEEEECCCCc---EEEEEECCCCeEEEee
Confidence            110   000               124788999999643     58999999999623343   8999999889999999


Q ss_pred             cCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047        274 HPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV  306 (350)
Q Consensus       274 HPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv  306 (350)
                      |||+...+.              ..+.+|..|+
T Consensus       160 HPE~~~~~~--------------~~~~lf~~f~  178 (178)
T cd01744         160 HPEASPGPH--------------DTEYLFDEFL  178 (178)
T ss_pred             CCCCCCCCC--------------CchHhHhhhC
Confidence            999875321              2457888874

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.94  E-value=1.2e-26  Score=202.99  Aligned_cols=170  Identities=21%  Similarity=0.318  Sum_probs=122.4

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ..+.++|+++|+.+++++++.+.+.  ..++++||||+|||+.++.  +                               
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~~dgvIl~Gg~~~~~--~-------------------------------   56 (181)
T cd01742          12 HLIARRVRELGVYSEILPNTTPLEE--IKLKNPKGIILSGGPSSVY--E-------------------------------   56 (181)
T ss_pred             HHHHHHHHhcCceEEEecCCCChhh--hcccCCCEEEECCCccccc--c-------------------------------
Confidence            4578899999999999999876542  2468899999999985432  0                               


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                           +...+    +.+.+.+   .+  +|+||||+|||+|+.++||++. ....+ +....++
T Consensus        57 ---------------------~~~~~----~~~~~~~---~~--~PilGIC~G~Qll~~~~gg~v~-~~~~~-~~G~~~v  104 (181)
T cd01742          57 ---------------------EDAPR----VDPEIFE---LG--VPVLGICYGMQLIAKALGGKVE-RGDKR-EYGKAEI  104 (181)
T ss_pred             ---------------------cccch----hhHHHHh---cC--CCEEEEcHHHHHHHHhcCCeEE-eCCCC-cceEEEE
Confidence                                 00001    2222332   23  9999999999999999999874 22222 2233343


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..   ...+++|..++..+        .++++|++.+.       .+|++++++|++ +++.   ++++++++.++||+|
T Consensus       105 ~~---~~~~~l~~~~~~~~--------~~~~~H~~~v~-------~l~~~~~~la~~-~~~~---i~a~~~~~~~~~g~Q  162 (181)
T cd01742         105 EI---DDSSPLFEGLPDEQ--------TVWMSHGDEVV-------KLPEGFKVIASS-DNCP---VAAIANEEKKIYGVQ  162 (181)
T ss_pred             Ee---cCCChhhcCCCCce--------EEEcchhhhhh-------hcCCCcEEEEeC-CCCC---EEEEEeCCCcEEEEE
Confidence            32   23567888877643        58999999996       799999999997 5454   899999888999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV  306 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv  306 (350)
                      ||||++..+               .+.+++++|+
T Consensus       163 fHPE~~~~~---------------~g~~ll~~f~  181 (181)
T cd01742         163 FHPEVTHTE---------------KGKEILKNFL  181 (181)
T ss_pred             cCCccccCc---------------ChHHHHHhhC
Confidence            999988532               3678888773

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.94  E-value=7.9e-26  Score=201.42  Aligned_cols=189  Identities=18%  Similarity=0.154  Sum_probs=130.7

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...++.|++.|..+..++++.+.+++..  ...||||++||+.++.                                  
T Consensus        15 ~nl~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg~~~----------------------------------   58 (208)
T PRK05637         15 YNLVDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPGHPR----------------------------------   58 (208)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCCCHH----------------------------------
Confidence            4578899999999999999866555542  3678999999986542                                  


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          ....      ..++++.+. .  ++||||||+|||+|+.++||++.. .. ..++...++
T Consensus        59 --------------------d~~~------~~~li~~~~-~--~~PiLGIClG~Qlla~alGG~V~~-~~-~~~G~~~~i  107 (208)
T PRK05637         59 --------------------DAGN------MMALIDRTL-G--QIPLLGICLGFQALLEHHGGKVEP-CG-PVHGTTDNM  107 (208)
T ss_pred             --------------------HhhH------HHHHHHHHh-C--CCCEEEEcHHHHHHHHHcCCeecc-CC-cccceEEEe
Confidence                                0000      112222222 2  399999999999999999999752 22 233433344


Q ss_pred             eeecCCCCCcccccCCchhH----HhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccE
Q psy14047        193 EFMPSFRQSLLYSRAPIHVL----QELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPF  268 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~----~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i  268 (350)
                      ..+.....+++|..++....    ..++.+..|+++|++.+.       .+|++++++|++ +++...+++++++.+.++
T Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~-------~lp~~~~vlA~s-~~~~~~v~~a~~~~~~~~  179 (208)
T PRK05637        108 ILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCV-------VAPDGMESLGTC-SSEIGPVIMAAETTDGKA  179 (208)
T ss_pred             EECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhh-------cCCCCeEEEEEe-cCCCCCEEEEEEECCCCE
Confidence            44443345678877653211    111233579999999997       899999999996 432222578889888899


Q ss_pred             EEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        269 AGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       269 ~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      ||+|||||+..++               .+..|+++|+++...
T Consensus       180 ~GvQfHPE~~~T~---------------~G~~il~nfl~~~~~  207 (208)
T PRK05637        180 IGLQFHPESVLSP---------------TGPIILSRCVEQLLA  207 (208)
T ss_pred             EEEEeCCccCcCC---------------CHHHHHHHHHHHHhc
Confidence            9999999987653               378999999988754

>PLN02335 anthranilate synthase

Probab=99.94  E-value=5.9e-26  Score=204.46  Aligned_cols=182  Identities=16%  Similarity=0.241  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         32 PASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      ....+++|+++|..+.+++.+. +.+.+..  ...|||||+||+.+.+  +                             
T Consensus        31 t~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~--d-----------------------------   77 (222)
T PLN02335         31 TYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQ--D-----------------------------   77 (222)
T ss_pred             HHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChh--h-----------------------------
Confidence            3567899999999999999864 3333332  3678999999996542  1                             


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccC-ceeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCD-CFYEN  189 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~-~~~~~  189 (350)
                                            ...       ..+.+++.   +.++||||||+|||+|+.++||++. ..... .++..
T Consensus        78 ----------------------~~~-------~~~~~~~~---~~~~PiLGIClG~QlLa~alGg~v~-~~~~~~~~G~~  124 (222)
T PLN02335         78 ----------------------SGI-------SLQTVLEL---GPLVPLFGVCMGLQCIGEAFGGKIV-RSPFGVMHGKS  124 (222)
T ss_pred             ----------------------ccc-------hHHHHHHh---CCCCCEEEecHHHHHHHHHhCCEEE-eCCCccccCce
Confidence                                  001       11222222   2349999999999999999999875 33322 34455


Q ss_pred             eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccccc-ceEEEEeecCCCceEEEEEEcCCcc-
Q psy14047        190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE-WKVLSTNSNNRGLKFISSVEHKVYP-  267 (350)
Q Consensus       190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~-~~vla~s~~~~~~e~v~ai~~~~~~-  267 (350)
                      .++..+.. ..+.||.+++..+        .++++|++++.+.     .+|++ ++++|++ .++.   +++++++++| 
T Consensus       125 ~~v~~~~~-~~~~Lf~~l~~~~--------~v~~~H~~~v~~~-----~lp~~~~~v~a~~-~~~~---v~ai~~~~~~~  186 (222)
T PLN02335        125 SPVHYDEK-GEEGLFSGLPNPF--------TAGRYHSLVIEKD-----TFPSDELEVTAWT-EDGL---IMAARHRKYKH  186 (222)
T ss_pred             eeeEECCC-CCChhhhCCCCCC--------EEEechhheEecc-----cCCCCceEEEEEc-CCCC---EEEEEecCCCC
Confidence            56654332 3457888877543        6999999999754     46766 9999986 5554   9999999888 


Q ss_pred             EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        268 FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       268 i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      +||+|||||+..++               .+..+|++|++.|+..
T Consensus       187 i~GvQfHPE~~~~~---------------~g~~i~~nF~~~~~~~  216 (222)
T PLN02335        187 IQGVQFHPESIITT---------------EGKTIVRNFIKIIEKK  216 (222)
T ss_pred             EEEEEeCCCCCCCh---------------hHHHHHHHHHHHHHhh
Confidence            89999999987542               3789999999988544

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.94  E-value=5.1e-26  Score=200.57  Aligned_cols=177  Identities=18%  Similarity=0.331  Sum_probs=124.6

Q ss_pred             ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhh
Q psy14047         28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQS  107 (350)
Q Consensus        28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (350)
                      .+|... .+++|+++|..+..++.+...  .. .++.+||||++||+. . |.                           
T Consensus        11 dsf~~~-i~~~l~~~g~~~~v~~~~~~~--~~-~l~~~d~iIi~gGp~-~-~~---------------------------   57 (190)
T PRK06895         11 DSFTFN-LVDLIRKLGVPMQVVNVEDLD--LD-EVENFSHILISPGPD-V-PR---------------------------   57 (190)
T ss_pred             CchHHH-HHHHHHHcCCcEEEEECCccC--hh-HhccCCEEEECCCCC-C-hH---------------------------
Confidence            445445 789999999998888875321  22 256789999998884 2 10                           


Q ss_pred             hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCcee
Q psy14047        108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFY  187 (350)
Q Consensus       108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~  187 (350)
                                                 .+..    +.+++++ .+++  +|+||||+|||+|+.++||+|. ......++
T Consensus        58 ---------------------------~~~~----~~~~i~~-~~~~--~PiLGIClG~Qlla~~~Gg~V~-~~~~~~~g  102 (190)
T PRK06895         58 ---------------------------AYPQ----LFAMLER-YHQH--KSILGVCLGHQTLCEFFGGELY-NLNNVRHG  102 (190)
T ss_pred             ---------------------------HhhH----HHHHHHH-hcCC--CCEEEEcHHHHHHHHHhCCeEe-ecCCCccC
Confidence                                       1111    2344444 3444  9999999999999999999985 22222334


Q ss_pred             eeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCcc
Q psy14047        188 ENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP  267 (350)
Q Consensus       188 ~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~  267 (350)
                      ...++..   ..++++|++++..+        .++++|++++.+.     .+|+++.++|.+ .++   ++++++++++|
T Consensus       103 ~~~~v~~---~~~~~l~~~~~~~~--------~v~~~Hs~~v~~~-----~lp~~l~~~a~~-~~~---~i~a~~~~~~p  162 (190)
T PRK06895        103 QQRPLKV---RSNSPLFDGLPEEF--------NIGLYHSWAVSEE-----NFPTPLEITAVC-DEN---VVMAMQHKTLP  162 (190)
T ss_pred             ceEEEEE---CCCChhhhcCCCce--------EEEcchhheeccc-----ccCCCeEEEEEC-CCC---cEEEEEECCCC
Confidence            3334432   34577888877654        5999999999643     478889998885 333   59999999999


Q ss_pred             EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        268 FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       268 i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      +||+|||||+..++|               +..++++|++
T Consensus       163 i~GvQFHPE~~~~~~---------------g~~il~nf~~  187 (190)
T PRK06895        163 IYGVQFHPESYISEF---------------GEQILRNWLA  187 (190)
T ss_pred             EEEEEeCCCcCCCcc---------------hHHHHHHHHh
Confidence            999999999977665               5678888875

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.94  E-value=7.3e-26  Score=199.98  Aligned_cols=178  Identities=19%  Similarity=0.259  Sum_probs=127.8

Q ss_pred             HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...+++|++.|..+..++.++ +.+.+..  ...||||++||+.++.  +                              
T Consensus        13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p~--~------------------------------   58 (195)
T PRK07649         13 FNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSPN--E------------------------------   58 (195)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChH--h------------------------------
Confidence            457899999999999999874 3344432  4689999999996542  1                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                           ....       .+.++.+ +++  +||||||+|||+|+.++||++. ......++...+
T Consensus        59 ---------------------~~~~-------~~~i~~~-~~~--~PvLGIClG~Qlla~~lGg~V~-~~~~~~~G~~~~  106 (195)
T PRK07649         59 ---------------------AGIS-------MEVIRYF-AGK--IPIFGVCLGHQSIAQVFGGEVV-RAERLMHGKTSL  106 (195)
T ss_pred             ---------------------CCCc-------hHHHHHh-cCC--CCEEEEcHHHHHHHHHcCCEEe-eCCCcccCCeEE
Confidence                                 0001       1112222 233  9999999999999999999985 333333444333


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..    .++++|.+++..+        .++++|++.+...     .+|++++++|++ +++.   ++++++++.++||+
T Consensus       107 i~~----~~~~lf~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~~~a~s-~~~~---v~a~~~~~~~i~gv  165 (195)
T PRK07649        107 MHH----DGKTIFSDIPNPF--------TATRYHSLIVKKE-----TLPDCLEVTSWT-EEGE---IMAIRHKTLPIEGV  165 (195)
T ss_pred             EEE----CCChhhcCCCCCC--------EEEEechheEecc-----cCCCCeEEEEEc-CCCc---EEEEEECCCCEEEE
Confidence            321    2456888877654        6999999998532     589999999996 5554   89999999899999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      |||||+..++               .+..++++|++.+..+
T Consensus       166 QFHPE~~~t~---------------~g~~il~nfl~~~~~~  191 (195)
T PRK07649        166 QFHPESIMTS---------------HGKELLQNFIRKYSPS  191 (195)
T ss_pred             EECCCCCCCc---------------cHHHHHHHHHHHhHhh
Confidence            9999977532               3789999999877554

>PRK00758 GMP synthase subunit A; Validated

Probab=99.94  E-value=4.2e-26  Score=200.11  Aligned_cols=170  Identities=21%  Similarity=0.309  Sum_probs=123.2

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhccc-ceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQV-NGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~-dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...+++++++|..+.++++..+.+++    +.. |||++|||+ ++.                          +      
T Consensus        13 ~~i~~~l~~~g~~~~~~~~~~~~~~l----~~~~dgivi~Gg~-~~~--------------------------~------   55 (184)
T PRK00758         13 HLIHRTLRYLGVDAKIIPNTTPVEEI----KAFEDGLILSGGP-DIE--------------------------R------   55 (184)
T ss_pred             HHHHHHHHHcCCcEEEEECCCCHHHH----hhcCCEEEECCCC-Chh--------------------------h------
Confidence            45678899999999999987765544    445 999999998 432                          0      


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                           ..       .+.+++++   .+  +||||||+|||+|+.++||++. ....... ...+
T Consensus        56 ---------------------~~-------~~~~~l~~---~~--~PilGIC~G~Q~L~~a~Gg~v~-~~~~~~~-g~~~  100 (184)
T PRK00758         56 ---------------------AG-------NCPEYLKE---LD--VPILGICLGHQLIAKAFGGEVG-RGEYGEY-ALVE  100 (184)
T ss_pred             ---------------------cc-------ccHHHHHh---CC--CCEEEEeHHHHHHHHhcCcEEe-cCCCcee-eeEE
Confidence                                 00       02233332   23  9999999999999999999975 3322222 2334


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..+   ..+.+|.+++..+        .++++|++.+.       .+|++++++|++ +++.   +++++++++++||+
T Consensus       101 i~~~---~~~~l~~~~~~~~--------~~~~~H~~~v~-------~l~~~~~~la~~-~~~~---v~a~~~~~~~~~g~  158 (184)
T PRK00758        101 VEIL---DEDDILKGLPPEI--------RVWASHADEVK-------ELPDGFEILARS-DICE---VEAMKHKEKPIYGV  158 (184)
T ss_pred             EEEc---CCChhhhCCCCCc--------EEEeehhhhhh-------hCCCCCEEEEEC-CCCC---EEEEEECCCCEEEE
Confidence            4332   2455777766543        68999999986       799999999996 5554   88999988889999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      |||||++..+               .+..|++.|++.|.+
T Consensus       159 QfHPE~~~~~---------------~g~~l~~~f~~~~~~  183 (184)
T PRK00758        159 QFHPEVAHTE---------------YGEEIFKNFLEICGK  183 (184)
T ss_pred             EcCCccCCCc---------------hHHHHHHHHHHHHcc
Confidence            9999987532               378999999987754

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.94  E-value=1e-25  Score=214.74  Aligned_cols=174  Identities=20%  Similarity=0.348  Sum_probs=124.4

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...++++|+++|+.++++|++.+.+++.+  ...|||+|+||+.|..                                 
T Consensus       184 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~pDGIiLSgGPgdp~---------------------------------  228 (358)
T TIGR01368       184 KQNILRRLVKRGCEVTVVPYDTDAEEIKK--YNPDGIFLSNGPGDPA---------------------------------  228 (358)
T ss_pred             HHHHHHHHHHCCCEEEEEcCCCCHHHHHh--hCCCEEEECCCCCCHH---------------------------------
Confidence            45799999999999999999876555433  2459999999985421                                 


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                             ...    ...+.++++.+ +  +||||||+|||+|+.++||++. ....++++...|
T Consensus       229 -----------------------~~~----~~i~~i~~~~~-~--~PILGIClG~QlLa~a~Gg~v~-kl~~gh~G~nhp  277 (358)
T TIGR01368       229 -----------------------AVE----PAIETIRKLLE-K--IPIFGICLGHQLLALAFGAKTY-KMKFGHRGGNHP  277 (358)
T ss_pred             -----------------------HHH----HHHHHHHHHHc-C--CCEEEECHHHHHHHHHhCCcee-ccCcCcCCCcee
Confidence                                   011    12334444443 3  9999999999999999999874 334455555555


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccc-ccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      +....   ...+               ..+.++|++++.++     .++ ++++++|++.+|+.   |++++++++|+||
T Consensus       278 V~~~~---~~~v---------------~itsqnH~~aV~~~-----~l~~~~l~vta~~~nDg~---Vegi~h~~~pi~g  331 (358)
T TIGR01368       278 VKDLI---TGRV---------------EITSQNHGYAVDPD-----SLPAGDLEVTHVNLNDGT---VEGIRHKDLPVFS  331 (358)
T ss_pred             eEECC---CCcE---------------EEeecCCCcEEccc-----ccCCCceEEEEEECCCCc---EEEEEECCCCEEE
Confidence            53211   1111               13567899999755     355 68999999734554   9999999999999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +|||||+.+.+.              +.++||+.|++.+++
T Consensus       332 VQfHPE~~~gp~--------------d~~~lF~~F~~~~~~  358 (358)
T TIGR01368       332 VQYHPEASPGPH--------------DTEYLFDEFIDLIKK  358 (358)
T ss_pred             EEECCCCCCCCC--------------ChHHHHHHHHHHhhC
Confidence            999999875422              367899999988753

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.94  E-value=9.5e-26  Score=215.36  Aligned_cols=174  Identities=21%  Similarity=0.338  Sum_probs=126.8

Q ss_pred             chhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhh
Q psy14047         30 YIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLL  109 (350)
Q Consensus        30 ~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (350)
                      .+..+++++|+++|+.++++|++.+.+++..  ..+|||+|+||+.|..                               
T Consensus       186 G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIvLSgGPgdp~-------------------------------  232 (360)
T PRK12564        186 GVKRNILRELAERGCRVTVVPATTTAEEILA--LNPDGVFLSNGPGDPA-------------------------------  232 (360)
T ss_pred             CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHh--cCCCEEEEeCCCCChH-------------------------------
Confidence            3567899999999999999999877665543  2689999999985421                               


Q ss_pred             hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeee
Q psy14047        110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYEN  189 (350)
Q Consensus       110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~  189 (350)
                                               .+.    ...+.++++.+++  +||||||+|||+|+.++||++. ....+.++..
T Consensus       233 -------------------------~~~----~~~~~i~~~~~~~--~PilGIClG~QlLa~a~Gg~v~-kl~~gh~G~~  280 (360)
T PRK12564        233 -------------------------ALD----YAIEMIRELLEKK--IPIFGICLGHQLLALALGAKTY-KMKFGHRGAN  280 (360)
T ss_pred             -------------------------HHH----HHHHHHHHHHHcC--CeEEEECHHHHHHHHHhCCcEe-ccCCCccCCc
Confidence                                     011    1334455555444  9999999999999999999975 3444555555


Q ss_pred             eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047        190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA  269 (350)
Q Consensus       190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~  269 (350)
                      .|+....   ...               ...+.++|+++|.+.     .||++++++|++.+|+.   +++++++++|+|
T Consensus       281 ~pv~~~~---~~~---------------~~its~~H~~~V~~~-----~lp~~l~v~a~~~~Dg~---iegi~~~~~pi~  334 (360)
T PRK12564        281 HPVKDLE---TGK---------------VEITSQNHGFAVDED-----SLPANLEVTHVNLNDGT---VEGLRHKDLPAF  334 (360)
T ss_pred             eeeEECC---CCc---------------EEEEecCcccEEccc-----ccCCceEEEEEeCCCCc---EEEEEECCCCEE
Confidence            5553221   010               124678999999654     57889999999733444   999999999999


Q ss_pred             EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      |+|||||..+.+.              +++++|+.|++.
T Consensus       335 gVQfHPE~~~gp~--------------d~~~lF~~F~~~  359 (360)
T PRK12564        335 SVQYHPEASPGPH--------------DSAYLFDEFVEL  359 (360)
T ss_pred             EEEeCCcCCCCCC--------------CHHHHHHHHHHh
Confidence            9999999876432              367899999875

>CHL00101 trpG anthranilate synthase component 2

Probab=99.94  E-value=8.4e-26  Score=199.10  Aligned_cols=174  Identities=18%  Similarity=0.245  Sum_probs=123.5

Q ss_pred             HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...+++|++.|..+..++.+. +.+.+.  ...+||||++||+.++.                                 
T Consensus        13 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiiisgGpg~~~---------------------------------   57 (190)
T CHL00101         13 YNLVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIIISPGPGHPR---------------------------------   57 (190)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEECCCCCChH---------------------------------
Confidence            457889999999999999874 333332  24689999999986432                                 


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                           ......   .++    +..+++  +||||||+|||+|+.++||+|. ......++....
T Consensus        58 ---------------------~~~~~~---~i~----~~~~~~--~PiLGIClG~Qlla~~~Gg~V~-~~~~~~~g~~~~  106 (190)
T CHL00101         58 ---------------------DSGISL---DVI----SSYAPY--IPILGVCLGHQSIGYLFGGKII-KAPKPMHGKTSK  106 (190)
T ss_pred             ---------------------HCcchH---HHH----HHhcCC--CcEEEEchhHHHHHHHhCCEEE-ECCCcccCceee
Confidence                                 011111   122    223344  9999999999999999999985 333333443332


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCcc-EEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP-FAG  270 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~-i~g  270 (350)
                      +.    ...+++|.+++..+        .++++|++.+...     .||++++++|++ +++.   +++++++++| +||
T Consensus       107 ~~----~~~~~l~~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~vla~s-~~~~---v~a~~~~~~~~i~g  165 (190)
T CHL00101        107 IY----HNHDDLFQGLPNPF--------TATRYHSLIIDPL-----NLPSPLEITAWT-EDGL---IMACRHKKYKMLRG  165 (190)
T ss_pred             Ee----eCCcHhhccCCCce--------EEEcchhheeecc-----cCCCceEEEEEc-CCCc---EEEEEeCCCCCEEE
Confidence            21    12456777776543        6899999999532     589999999996 5555   8999999999 999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      +|||||+..++               .+..|+++|++.
T Consensus       166 vQfHPE~~~~~---------------~g~~l~~nf~~~  188 (190)
T CHL00101        166 IQFHPESLLTT---------------HGQQILRNFLSL  188 (190)
T ss_pred             EEeCCccCCCh---------------hHHHHHHHHHhh
Confidence            99999986432               378899999874

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.94  E-value=1.1e-25  Score=198.63  Aligned_cols=177  Identities=16%  Similarity=0.203  Sum_probs=121.5

Q ss_pred             HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...++.|++.|+.+..++.+. +.+++++  ...||||++||+.+..  +                              
T Consensus        13 ~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~--~------------------------------   58 (191)
T PRK06774         13 YNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPN--E------------------------------   58 (191)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChH--h------------------------------
Confidence            456778888999999999874 4555543  2679999999997542  0                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                           .....    .+++   . .+++  +||||||+|||+|+.++||++. ......++. ..
T Consensus        59 ---------------------~~~~~----~~i~---~-~~~~--~PiLGIC~G~Qlla~~~GG~v~-~~~~~~~G~-~~  105 (191)
T PRK06774         59 ---------------------AGISL----AVIR---H-FADK--LPILGVCLGHQALGQAFGARVV-RARQVMHGK-TS  105 (191)
T ss_pred             ---------------------CCCch----HHHH---H-hcCC--CCEEEECHHHHHHHHHhCCEEE-eCCcceecc-eE
Confidence                                 00000    1222   2 2333  9999999999999999999975 222222222 22


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..   ...+.+|++++..        ..++++|++++.+.     .+|++++++|+|..++..+.++++++++.|+||+
T Consensus       106 ~~~---~~~~~lf~~l~~~--------~~v~~~Hs~~v~~~-----~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~Gv  169 (191)
T PRK06774        106 AIC---HSGQGVFRGLNQP--------LTVTRYHSLVIAAD-----SLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGV  169 (191)
T ss_pred             EEE---ecCchhhcCCCCC--------cEEEEeCcceeecc-----CCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEE
Confidence            211   1235577776553        36999999999532     6899999999972233335688899988899999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      |||||+..+.               .+..||++|++
T Consensus       170 QfHPE~~~~~---------------~G~~i~~nf~~  190 (191)
T PRK06774        170 QFHPESILSE---------------QGHQLLDNFLK  190 (191)
T ss_pred             EECCCcCCCc---------------cHHHHHHHHhh
Confidence            9999986432               37889999975

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.93  E-value=4.2e-25  Score=194.90  Aligned_cols=167  Identities=25%  Similarity=0.402  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      ...+.++++++.|..+..+++..+.....+.++..|||+++||+.++.                                
T Consensus         9 ~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~--------------------------------   56 (192)
T PF00117_consen    9 FTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPY--------------------------------   56 (192)
T ss_dssp             THHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTT--------------------------------
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCccc--------------------------------
Confidence            357889999999999999998765444422478899999999986543                                


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCc-cCceeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTR-CDCFYEN  189 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~-~~~~~~~  189 (350)
                                             + +.    .+.++++++.+.+  +||||||+|||+|+.++||++. ... .+..+..
T Consensus        57 -----------------------d-~~----~~~~~i~~~~~~~--~PilGIC~G~Q~la~~~G~~v~-~~~~~~~~g~~  105 (192)
T PF00117_consen   57 -----------------------D-IE----GLIELIREARERK--IPILGICLGHQILAHALGGKVV-PSPEKPHHGGN  105 (192)
T ss_dssp             -----------------------S-HH----HHHHHHHHHHHTT--SEEEEETHHHHHHHHHTTHEEE-EEESEEEEEEE
T ss_pred             -----------------------c-cc----ccccccccccccc--eEEEEEeehhhhhHHhcCCccc-ccccccccccc
Confidence                                   1 11    1333444444444  9999999999999999999975 222 3444444


Q ss_pred             eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccc---ccccceEEEEeecCCCceEEEEEEcCCc
Q psy14047        190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG---LAKEWKVLSTNSNNRGLKFISSVEHKVY  266 (350)
Q Consensus       190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~---L~~~~~vla~s~~~~~~e~v~ai~~~~~  266 (350)
                      .++....   .+++|.+.+..+        .++.+|++.+.       .   +|++++++|++ .++.  .++++.+.+.
T Consensus       106 ~~~~~~~---~~~~~~~~~~~~--------~~~~~H~~~v~-------~~~~~p~~~~~la~s-~~~~--~~~~~~~~~~  164 (192)
T PF00117_consen  106 IPISETP---EDPLFYGLPESF--------KAYQYHSDAVN-------PDDLLPEGFEVLASS-SDGC--PIQAIRHKDN  164 (192)
T ss_dssp             EEEEEEE---EHGGGTTSTSEE--------EEEEEECEEEE-------EGHHHHTTEEEEEEE-TTTT--EEEEEEECTT
T ss_pred             ccccccc---cccccccccccc--------ccccccceeee-------ccccccccccccccc-cccc--cccccccccc
Confidence            4443321   146777776644        68999999997       5   89999999997 4442  2778888887


Q ss_pred             cEEEEcccCCcCCcc
Q psy14047        267 PFAGIQFHPEKNAYE  281 (350)
Q Consensus       267 ~i~gvQfHPE~~~~~  281 (350)
                      |+||+|||||++...
T Consensus       165 ~i~g~QfHPE~~~~~  179 (192)
T PF00117_consen  165 PIYGVQFHPEFSSSP  179 (192)
T ss_dssp             SEEEESSBTTSTTST
T ss_pred             EEEEEecCCcCCCCC
Confidence            899999999988653

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.93  E-value=8.4e-26  Score=198.98  Aligned_cols=176  Identities=19%  Similarity=0.225  Sum_probs=131.9

Q ss_pred             HHHHHHHHHcC-CeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASG-ARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G-~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ..+.+++++.| ..-..++++.+.+.+..  ...+|||++||+++++.                                
T Consensus        15 ~li~r~~re~g~v~~e~~~~~~~~~~~~~--~~~~giIlsGgp~sv~~--------------------------------   60 (198)
T COG0518          15 GLIARRLRELGYVYSEIVPYTGDAEELPL--DSPDGIIISGGPMSVYD--------------------------------   60 (198)
T ss_pred             HHHHHHHHHcCCceEEEEeCCCCcccccc--cCCCEEEEcCCCCCCcc--------------------------------
Confidence            45668999999 66677788877766542  45599999999977651                                


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                           .++|..   .+.+++++....+  +||||||+|||+|+.++||+|. .+.. .+.+..+
T Consensus        61 ---------------------~~~w~~---~~~~~i~~~~~p~--~pvLGIC~G~Ql~A~~lGg~V~-~~~~-~E~G~~~  112 (198)
T COG0518          61 ---------------------EDPWLP---REKDLIKDAGVPG--KPVLGICLGHQLLAKALGGKVE-RGPK-REIGWTP  112 (198)
T ss_pred             ---------------------ccccch---hHHHHHHHhCCCC--CCEEEEChhHHHHHHHhCCEEe-ccCC-CccceEE
Confidence                                 111221   2567777777555  7899999999999999999986 4433 4455677


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      ++.++  ..+.+|++++....       .|+.+|.+.+.       +||++++++|+| +.+.   ++++++. .++||+
T Consensus       113 v~~~~--~~~~l~~gl~~~~~-------~v~~sH~D~v~-------~lP~g~~vlA~s-~~cp---~qa~~~~-~~~~gv  171 (198)
T COG0518         113 VELTE--GDDPLFAGLPDLFT-------TVFMSHGDTVV-------ELPEGAVVLASS-ETCP---NQAFRYG-KRAYGV  171 (198)
T ss_pred             EEEec--CccccccCCccccC-------ccccchhCccc-------cCCCCCEEEecC-CCCh---hhheecC-CcEEEE
Confidence            76654  23378888776431       48999999997       899999999997 6665   7899988 689999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      |||||.+.                +.++.++++|+.
T Consensus       172 QFHpEv~~----------------~~~~~~l~nf~~  191 (198)
T COG0518         172 QFHPEVTH----------------EYGEALLENFAH  191 (198)
T ss_pred             eeeeEEeH----------------HHHHHHHHHhhh
Confidence            99999763                357788888873

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.93  E-value=3e-25  Score=191.12  Aligned_cols=158  Identities=24%  Similarity=0.316  Sum_probs=116.3

Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh--cCccccCCccCceeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS--NNENELRTRCDCFYEN  189 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~--Gg~v~~~~~~~~~~~~  189 (350)
                      ++.+..+|+||+||.|++..+++.+.+..  +.+.+++..+.|  +|+||||+|||+|....  ++...+++.++....+
T Consensus        34 ~~~i~~AD~liLPGVGaf~~am~~L~~~g--l~~~i~~~~~~~--kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r  109 (204)
T COG0118          34 PEEILKADKLILPGVGAFGAAMANLRERG--LIEAIKEAVESG--KPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVR  109 (204)
T ss_pred             HHHHhhCCEEEecCCCCHHHHHHHHHhcc--hHHHHHHHHhcC--CCEEEEeHhHHhhhhcccccCCCCCcceecceEEE
Confidence            45678999999999999999899888764  899999998888  99999999999999763  2222455655555433


Q ss_pred             eece--eecCC--------CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEE
Q psy14047        190 LALE--FMPSF--------RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFIS  259 (350)
Q Consensus       190 ~~i~--~~~~~--------~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~  259 (350)
                      .+-.  .+++.        .+++||.++++        ...+|+.|+|.+.+        .+.-.++++  .+++.+|.+
T Consensus       110 ~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~--------~~~~YFVHSY~~~~--------~~~~~v~~~--~~YG~~f~A  171 (204)
T COG0118         110 FPAEDLKVPHMGWNQVEFVRGHPLFKGIPD--------GAYFYFVHSYYVPP--------GNPETVVAT--TDYGEPFPA  171 (204)
T ss_pred             cCCCCCCCCccccceeeccCCChhhcCCCC--------CCEEEEEEEEeecC--------CCCceEEEe--ccCCCeeEE
Confidence            2221  12222        34556666554        35799999999962        233456666  567767999


Q ss_pred             EEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047        260 SVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA  309 (350)
Q Consensus       260 ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~  309 (350)
                      +|+..  +++|+|||||++.                +.+..+.++|++.+
T Consensus       172 aV~k~--N~~g~QFHPEKSg----------------~~Gl~lL~NFl~~~  203 (204)
T COG0118         172 AVAKD--NVFGTQFHPEKSG----------------KAGLKLLKNFLEWI  203 (204)
T ss_pred             EEEeC--CEEEEecCcccch----------------HHHHHHHHHHHhhc
Confidence            99876  6999999999985                35788999998764

>PLN02347 GMP synthetase

Probab=99.93  E-value=1.1e-24  Score=217.96  Aligned_cols=189  Identities=15%  Similarity=0.212  Sum_probs=133.4

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...+++|++.|..+.++|++.+.+.+..  ..+||||||||+.+++..+                               
T Consensus        24 ~~I~r~lrelgv~~~v~p~~~~~~~i~~--~~~dgIILsGGP~sv~~~~-------------------------------   70 (536)
T PLN02347         24 HLITRRVRELGVYSLLLSGTASLDRIAS--LNPRVVILSGGPHSVHVEG-------------------------------   70 (536)
T ss_pred             HHHHHHHHHCCCeEEEEECCCCHHHHhc--CCCCEEEECCCCCcccccC-------------------------------
Confidence            5667899999999999999877666643  2789999999986653100                               


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          ...+..   .+++.+.+   .+  +||||||+|||+|+.++||+|. ..... +.+..++
T Consensus        71 --------------------~p~~~~---~i~~~~~~---~~--iPILGIClG~QlLa~alGG~V~-~~~~~-e~G~~~v  120 (536)
T PLN02347         71 --------------------APTVPE---GFFDYCRE---RG--VPVLGICYGMQLIVQKLGGEVK-PGEKQ-EYGRMEI  120 (536)
T ss_pred             --------------------CchhhH---HHHHHHHh---cC--CcEEEECHHHHHHHHHcCCEEE-ecCCc-ccceEEE
Confidence                                001111   24454443   23  9999999999999999999975 22222 2233444


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..   ..+++||++++...      ...++++|++.+.       .+|++++++|++ +++.   ++++++++.|+||+|
T Consensus       121 ~i---~~~~~Lf~~l~~~~------~~~v~~~Hsd~V~-------~lP~g~~vlA~s-~~~~---iaai~~~~~~i~GvQ  180 (536)
T PLN02347        121 RV---VCGSQLFGDLPSGE------TQTVWMSHGDEAV-------KLPEGFEVVAKS-VQGA---VVAIENRERRIYGLQ  180 (536)
T ss_pred             EE---cCCChhhhcCCCCc------eEEEEEEEEEEee-------eCCCCCEEEEEe-CCCc---EEEEEECCCCEEEEE
Confidence            33   23567888876531      1368999999997       899999999997 5554   799999888999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcC-CCCCCCH
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGS-HHSFETE  319 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~-~~~~~~~  319 (350)
                      ||||++.++               .+..++++|+ +.|+.+ ..+.++.
T Consensus       181 FHPE~~~t~---------------~G~~iL~NFl~~ic~~~~~~~~~~~  214 (536)
T PLN02347        181 YHPEVTHSP---------------KGMETLRHFLFDVCGVTADWKMQDV  214 (536)
T ss_pred             ccCCCCccc---------------hHHHHHHHHHHHHhCcCCCcCcchH
Confidence            999987542               3677787776 677665 3444443

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.92  E-value=2.3e-24  Score=205.20  Aligned_cols=175  Identities=21%  Similarity=0.333  Sum_probs=125.0

Q ss_pred             hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      +...++++|+++|+.++++|++.+.+.+.+  .++|||+|+||+.|..  +                             
T Consensus       177 ~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPgdp~--~-----------------------------  223 (354)
T PRK12838        177 YKKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPGDPK--E-----------------------------  223 (354)
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCCChH--H-----------------------------
Confidence            567899999999999999999877655543  3789999999986431  0                             


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                            ...       ..+.++++.+ .  +||||||+|||+|+.++||++. ....+.++...
T Consensus       224 ----------------------~~~-------~~~~i~~~~~-~--~PvlGIClG~QlLa~a~Gg~v~-kl~~gh~G~~h  270 (354)
T PRK12838        224 ----------------------LQP-------YLPEIKKLIS-S--YPILGICLGHQLIALALGADTE-KLPFGHRGANH  270 (354)
T ss_pred             ----------------------hHH-------HHHHHHHHhc-C--CCEEEECHHHHHHHHHhCCEEe-cCCCCccCCce
Confidence                                  011       2233444442 2  9999999999999999999975 33444555555


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccc-cceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK-EWKVLSTNSNNRGLKFISSVEHKVYPFA  269 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~-~~~vla~s~~~~~~e~v~ai~~~~~~i~  269 (350)
                      |+....   .+.++               .+.++|++++...     .++. ++++++.+..|+   .|+++++++.|+|
T Consensus       271 pV~~~~---~~~~~---------------~ts~~H~~aV~~~-----sl~~~~l~v~a~~~~Dg---~Veai~~~~~pi~  324 (354)
T PRK12838        271 PVIDLT---TGRVW---------------MTSQNHGYVVDED-----SLDGTPLSVRFFNVNDG---SIEGLRHKKKPVL  324 (354)
T ss_pred             EEEECC---CCeEE---------------EeccchheEeccc-----ccCCCCcEEEEEECCCC---eEEEEEECCCCEE
Confidence            554321   11121               3567899999743     3554 589999863344   4999999999999


Q ss_pred             EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      |+|||||..+.+        |      ++++||+.|++.+++
T Consensus       325 gVQfHPE~~~gp--------~------d~~~lF~~F~~~~~~  352 (354)
T PRK12838        325 SVQFHPEAHPGP--------H------DAEYIFDEFLEMMEK  352 (354)
T ss_pred             EEEeCCCCCCCC--------c------cHHHHHHHHHHHHHh
Confidence            999999987532        1      377999999999864

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.92  E-value=3e-24  Score=205.74  Aligned_cols=175  Identities=21%  Similarity=0.338  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ....+++|+++|+.++++|++.+.+++..  .++|||+|+||+.|..  .                              
T Consensus       203 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~dgIilSgGPg~p~--~------------------------------  248 (382)
T CHL00197        203 KYNILRRLKSFGCSITVVPATSPYQDILS--YQPDGILLSNGPGDPS--A------------------------------  248 (382)
T ss_pred             HHHHHHHHHHCCCeEEEEcCCCCHHHHhc--cCCCEEEEcCCCCChh--H------------------------------
Confidence            45689999999999999999887666643  3789999999985421  0                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                           ...       +.+.++++.+.+  +||||||+|||+|+.++||++. ....+..+...|
T Consensus       249 ---------------------~~~-------~i~~i~~~~~~~--~PilGIClGhQlLa~a~Gg~v~-k~~~Gh~g~n~p  297 (382)
T CHL00197        249 ---------------------IHY-------GIKTVKKLLKYN--IPIFGICMGHQILSLALEAKTF-KLKFGHRGLNHP  297 (382)
T ss_pred             ---------------------HHH-------HHHHHHHHHhCC--CCEEEEcHHHHHHHHHhCCEEe-ccCCCCCCCCEe
Confidence                                 111       223333333333  9999999999999999999874 334444443333


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccc-cceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK-EWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~-~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      +..             +..+       ..+.++|++++.++     .++. ++++++.+.+|+.   +++++++++|+||
T Consensus       298 v~~-------------~~~v-------~itsq~H~~~v~~~-----sv~~~~~~vt~~~~nDgt---vegi~h~~~pi~g  349 (382)
T CHL00197        298 SGL-------------NQQV-------EITSQNHGFAVNLE-----SLAKNKFYITHFNLNDGT---VAGISHSPKPYFS  349 (382)
T ss_pred             cCC-------------CCce-------EEeecchheEeecc-----ccCCCCcEEEEEECCCCC---EEEEEECCCCcEE
Confidence            321             1110       13567899998755     4554 6889888634554   8999999999999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH  313 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~  313 (350)
                      +|||||+.+.+        |      +.+++|++|++.|+++.
T Consensus       350 VQFHPE~~~gp--------~------d~~~lf~~Fv~~~~~~~  378 (382)
T CHL00197        350 VQYHPEASPGP--------H------DADYLFEYFIEIIKHSK  378 (382)
T ss_pred             EeeCCCCCCCC--------C------CHHHHHHHHHHHHHhhh
Confidence            99999987643        2      25689999999998753

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.92  E-value=5.7e-24  Score=213.06  Aligned_cols=175  Identities=23%  Similarity=0.318  Sum_probs=127.3

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ..++++|+++|..+.++|++.+.+.+..+  ++||||||||+.++.-..                               
T Consensus        17 ~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~sv~~~~-------------------------------   63 (511)
T PRK00074         17 QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPASVYEEG-------------------------------   63 (511)
T ss_pred             HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcccccCC-------------------------------
Confidence            67789999999999999998776666442  569999999996553000                               


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          ...       +.+.+.+   .+  +||||||+|||+|+.++||++. ..... +.+..++
T Consensus        64 --------------------~p~-------~~~~i~~---~~--~PvLGIC~G~QlLa~~lGG~V~-~~~~~-e~G~~~i  109 (511)
T PRK00074         64 --------------------APR-------ADPEIFE---LG--VPVLGICYGMQLMAHQLGGKVE-RAGKR-EYGRAEL  109 (511)
T ss_pred             --------------------Ccc-------ccHHHHh---CC--CCEEEECHHHHHHHHHhCCeEE-ecCCc-ccceEEE
Confidence                                000       1111222   33  9999999999999999999974 23222 2233444


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      +.+   .++++|++++..        ..++++|++.+.       .+|++++++|++ +++.   ++++++.+.++||+|
T Consensus       110 ~i~---~~~~Lf~~l~~~--------~~v~~~H~d~V~-------~lp~g~~vlA~s-~~~~---v~ai~~~~~~i~GvQ  167 (511)
T PRK00074        110 EVD---NDSPLFKGLPEE--------QDVWMSHGDKVT-------ELPEGFKVIAST-ENCP---IAAIANEERKFYGVQ  167 (511)
T ss_pred             EEc---CCChhhhcCCCc--------eEEEEECCeEEE-------ecCCCcEEEEEe-CCCC---EEEEEeCCCCEEEEe
Confidence            432   246788777654        368999999997       899999999997 5554   899998888999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHc
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASG  311 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~  311 (350)
                      ||||++.+               ..+..|+++|+ +.|..
T Consensus       168 FHPE~~~t---------------~~G~~il~nFl~~i~~~  192 (511)
T PRK00074        168 FHPEVTHT---------------PQGKKLLENFVFDICGC  192 (511)
T ss_pred             CCCCcCCc---------------hhHHHHHHHHHHHhcCC
Confidence            99998753               24788999999 56643

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.92  E-value=1.8e-24  Score=196.83  Aligned_cols=139  Identities=22%  Similarity=0.281  Sum_probs=108.4

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeecee
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEF  194 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~  194 (350)
                      ++++||||++||.....+...|..   .+.++++++.+.+  +||||||+|||+|+.++||++. ....+.+.+..++..
T Consensus        52 ~~~~dgvvi~Gg~~~~~d~~~w~~---~~~~~i~~~~~~~--~PvlGIC~G~Qlla~alGg~V~-~~~~g~e~G~~~v~~  125 (237)
T PRK09065         52 PDDFAGVIITGSWAMVTDRLDWSE---RTADWLRQAAAAG--MPLLGICYGHQLLAHALGGEVG-YNPAGRESGTVTVEL  125 (237)
T ss_pred             hhhcCEEEEeCCCcccCCCchhHH---HHHHHHHHHHHCC--CCEEEEChhHHHHHHHcCCccc-cCCCCCccceEEEEE
Confidence            456899999998887665555543   3667777777766  9999999999999999999975 443334445566666


Q ss_pred             ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEccc
Q psy14047        195 MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFH  274 (350)
Q Consensus       195 ~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfH  274 (350)
                      +.....+++|++++..+        .++.+|++.+.       .||++++++|++ +++.   ++++++++ ++||+|||
T Consensus       126 ~~~~~~~~l~~~~~~~~--------~v~~~H~d~v~-------~lp~~~~~la~s-~~~~---iqa~~~~~-~i~gvQfH  185 (237)
T PRK09065        126 HPAAADDPLFAGLPAQF--------PAHLTHLQSVL-------RLPPGAVVLARS-AQDP---HQAFRYGP-HAWGVQFH  185 (237)
T ss_pred             ccccccChhhhcCCccC--------cEeeehhhhhh-------hCCCCCEEEEcC-CCCC---eeEEEeCC-CEEEEEeC
Confidence            65555667888877654        58999999987       799999999997 5555   88999876 69999999


Q ss_pred             CCcCC
Q psy14047        275 PEKNA  279 (350)
Q Consensus       275 PE~~~  279 (350)
                      ||++.
T Consensus       186 PE~~~  190 (237)
T PRK09065        186 PEFTA  190 (237)
T ss_pred             CcCCH
Confidence            99874

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.92  E-value=3.6e-24  Score=195.28  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEE
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITH  222 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~  222 (350)
                      +.+++....+++  +||||||+|||+|+.++||+|. . ..+.+.+..+++++.....+++|..++..+        .++
T Consensus        82 i~~~i~~~~~~~--~PvLGIC~G~Qlla~a~GG~V~-~-~~g~e~G~~~v~l~~~g~~~~l~~~~~~~~--------~~~  149 (242)
T PRK07567         82 LSGLLDEVVARD--FPFLGACYGVGTLGHHQGGVVD-R-TYGEPVGAVTVSLTDAGRADPLLAGLPDTF--------TAF  149 (242)
T ss_pred             HHHHHHHHHhcC--CCEEEEchhHHHHHHHcCCEEe-c-CCCCcCccEEEEECCccCCChhhcCCCCce--------EEE
Confidence            334455555566  9999999999999999999985 3 223333455666655555667888776654        589


Q ss_pred             EeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCc
Q psy14047        223 NWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAY  280 (350)
Q Consensus       223 ~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~  280 (350)
                      ++|++.|.       .||++++++|+| +++.   ++++++++ ++||+|||||.+..
T Consensus       150 ~~H~d~V~-------~lp~~~~vlA~s-~~~~---vqa~~~~~-~~~gvQfHPE~~~~  195 (242)
T PRK07567        150 VGHKEAVS-------ALPPGAVLLATS-PTCP---VQMFRVGE-NVYATQFHPELDAD  195 (242)
T ss_pred             eehhhhhh-------hCCCCCEEEEeC-CCCC---EEEEEeCC-CEEEEEeCCcCCHH
Confidence            99999997       799999999997 5555   88999865 79999999998753

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.91  E-value=7.3e-24  Score=196.09  Aligned_cols=179  Identities=21%  Similarity=0.334  Sum_probs=137.6

Q ss_pred             chhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhh
Q psy14047         30 YIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLL  109 (350)
Q Consensus        30 ~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (350)
                      =+....++.|.+.|+++.++|+..+.+++.+  ...|||+|+.||.|-  .                             
T Consensus       188 GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~--~~pDGiflSNGPGDP--~-----------------------------  234 (368)
T COG0505         188 GVKRNILRELVKRGCRVTVVPADTSAEEILA--LNPDGIFLSNGPGDP--A-----------------------------  234 (368)
T ss_pred             CccHHHHHHHHHCCCeEEEEcCCCCHHHHHh--hCCCEEEEeCCCCCh--h-----------------------------
Confidence            3556888999999999999999988877654  478999999998651  1                             


Q ss_pred             hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeee
Q psy14047        110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYEN  189 (350)
Q Consensus       110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~  189 (350)
                                               ...    ..++.+++.....  +|+||||+|||||+.|+|++.. ..+.++++.+
T Consensus       235 -------------------------~~~----~~i~~ik~l~~~~--iPifGICLGHQllalA~Ga~T~-KmkFGHrG~N  282 (368)
T COG0505         235 -------------------------PLD----YAIETIKELLGTK--IPIFGICLGHQLLALALGAKTY-KMKFGHRGAN  282 (368)
T ss_pred             -------------------------HHH----HHHHHHHHHhccC--CCeEEEcHHHHHHHHhcCCcee-ecccCCCCCC
Confidence                                     111    1445666666543  6999999999999999999964 6778888888


Q ss_pred             eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047        190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA  269 (350)
Q Consensus       190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~  269 (350)
                      .|+.-.   ...++               ..+.++|.++|++++     +++..+++..+..|+.   ++++++++.|+|
T Consensus       283 hPV~dl---~tgrv---------------~ITSQNHGyaVd~~s-----~~~~~~vth~nlnDgT---vEGi~h~~~P~f  336 (368)
T COG0505         283 HPVKDL---DTGRV---------------YITSQNHGYAVDEDS-----LVETLKVTHVNLNDGT---VEGIRHKDLPAF  336 (368)
T ss_pred             cCcccc---cCCeE---------------EEEecCCceecChhh-----cCCCceeEEEeCCCCC---ccceecCCCceE
Confidence            887421   11222               257889999998763     4444388888866776   889999999999


Q ss_pred             EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047        270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH  313 (350)
Q Consensus       270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~  313 (350)
                      +||||||-++..+              ++.+||+.|++.++...
T Consensus       337 SVQ~HPEAsPGPh--------------Dt~ylFd~Fi~~~~~~~  366 (368)
T COG0505         337 SVQYHPEASPGPH--------------DTRYLFDEFIELMEAAK  366 (368)
T ss_pred             EEccCCCCCCCCc--------------ccHHHHHHHHHHHHHhh
Confidence            9999999998654              47899999999987654

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.91  E-value=1.4e-23  Score=184.63  Aligned_cols=185  Identities=20%  Similarity=0.244  Sum_probs=121.4

Q ss_pred             CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047          7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA   86 (350)
Q Consensus         7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~   86 (350)
                      +.|+|+.....              ..+++++|+++|+.++.++..   +    -++.+|||++|||+.++.        
T Consensus         2 m~~~i~~~~g~--------------~~~~~~~l~~~g~~~~~~~~~---~----~l~~~dgiii~GG~~~~~--------   52 (189)
T PRK13525          2 MKIGVLALQGA--------------VREHLAALEALGAEAVEVRRP---E----DLDEIDGLILPGGESTTM--------   52 (189)
T ss_pred             CEEEEEEcccC--------------HHHHHHHHHHCCCEEEEeCCh---h----HhccCCEEEECCCChHHH--------
Confidence            47888887653              156678899999999998742   1    257899999999874321        


Q ss_pred             ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047         87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF  166 (350)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~  166 (350)
                                                                     +..... ..+.++++++.++|  +||+|||+|+
T Consensus        53 -----------------------------------------------~~~~~~-~~~~~~i~~~~~~g--~PilGIC~G~   82 (189)
T PRK13525         53 -----------------------------------------------GKLLRD-FGLLEPLREFIASG--LPVFGTCAGM   82 (189)
T ss_pred             -----------------------------------------------HHHHHh-ccHHHHHHHHHHCC--CeEEEECHHH
Confidence                                                           011000 02456677777777  9999999999


Q ss_pred             HHHHHHhcCc-cccCCccCceeeeeecee-ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccce
Q psy14047        167 QLLLYTSNNE-NELRTRCDCFYENLALEF-MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWK  244 (350)
Q Consensus       167 QlLa~a~Gg~-v~~~~~~~~~~~~~~i~~-~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~  244 (350)
                      |+|+.++||. +..++..+......+... +.....+.++.+.++        ...++++|++.+.       .+|++++
T Consensus        83 QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~--------~~~~~~~H~d~v~-------~lp~~~~  147 (189)
T PRK13525         83 ILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGE--------PFPAVFIRAPYIE-------EVGPGVE  147 (189)
T ss_pred             HHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccCCCC--------CeEEEEEeCceee-------ccCCCcE
Confidence            9999999884 222222221111111000 000011233444332        2468999999997       8999999


Q ss_pred             EEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        245 VLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       245 vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      ++|++ + ..   +++++..  ++||+|||||++.                  ..+||++|++.|.
T Consensus       148 vlA~~-~-~~---~~~~~~~--~~~g~QfHPE~~~------------------~~~~~~~f~~~~~  188 (189)
T PRK13525        148 VLATV-G-GR---IVAVRQG--NILATSFHPELTD------------------DTRVHRYFLEMVK  188 (189)
T ss_pred             EEEEc-C-CE---EEEEEeC--CEEEEEeCCccCC------------------CchHHHHHHHHhh
Confidence            99995 3 33   4566643  7999999999763                  2589999999986

>PRK13566 anthranilate synthase; Provisional

Probab=99.91  E-value=1.8e-23  Score=215.52  Aligned_cols=181  Identities=20%  Similarity=0.256  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      .....++|++.|+.+.++++..+.+.+..  .++||||++||+.+..  ++                             
T Consensus       539 ~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~--~~~DgVVLsgGpgsp~--d~-----------------------------  585 (720)
T PRK13566        539 VHTLANYFRQTGAEVTTVRYGFAEEMLDR--VNPDLVVLSPGPGRPS--DF-----------------------------  585 (720)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCChhHhhh--cCCCEEEECCCCCChh--hC-----------------------------
Confidence            56888999999999999999877655542  5789999988885421  00                             


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                             .       +.++++.+.+++  +||||||+|||+|+.++||++. ....+.++...+
T Consensus       586 -----------------------~-------~~~lI~~a~~~~--iPILGIClG~QlLa~alGG~V~-~~~~~~~G~~~~  632 (720)
T PRK13566        586 -----------------------D-------CKATIDAALARN--LPIFGVCLGLQAIVEAFGGELG-QLAYPMHGKPSR  632 (720)
T ss_pred             -----------------------C-------cHHHHHHHHHCC--CcEEEEehhHHHHHHHcCCEEE-ECCCCccCCceE
Confidence                                   0       123333434444  9999999999999999999975 333344554445


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +...   ..+.||++++..+        .++++|++.+...     .+|++++++|++ .++   .|+++++++.|+||+
T Consensus       633 V~v~---~~~~Lf~~lp~~~--------~v~~~Hs~~v~~~-----~Lp~~~~vlA~s-~dg---~V~ai~~~~~pi~GV  692 (720)
T PRK13566        633 IRVR---GPGRLFSGLPEEF--------TVGRYHSLFADPE-----TLPDELLVTAET-EDG---VIMAIEHKTLPVAAV  692 (720)
T ss_pred             EEEC---CCCchhhcCCCCC--------EEEEecceeEeec-----cCCCceEEEEEe-CCC---cEEEEEECCCCEEEE
Confidence            5432   2457888877654        6999999988632     589999999997 555   499999998899999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      |||||+..+.-.            ..+..|+++|++.|.
T Consensus       693 QFHPE~i~t~~~------------~~G~~ii~nfl~~~~  719 (720)
T PRK13566        693 QFHPESIMTLGG------------DVGLRIIENVVRLLA  719 (720)
T ss_pred             eccCeeCCcCCc------------hhHHHHHHHHHHHhh
Confidence            999998643111            248899999999885

>PRK05665 amidotransferase; Provisional

Probab=99.91  E-value=7.7e-24  Score=192.56  Aligned_cols=137  Identities=17%  Similarity=0.149  Sum_probs=106.2

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeece
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE  193 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~  193 (350)
                      .++++||||++||....++..+|..   .+.++++++.+++  +|+||||+|||+|+.++||+|. ....+.+.+..++.
T Consensus        54 ~~~~~dgiiitGs~~~v~~~~pwi~---~l~~~i~~~~~~~--~PilGIC~GhQlla~AlGG~V~-~~~~G~e~G~~~~~  127 (240)
T PRK05665         54 DDEKFDAYLVTGSKADSFGTDPWIQ---TLKTYLLKLYERG--DKLLGVCFGHQLLALLLGGKAE-RASQGWGVGIHRYQ  127 (240)
T ss_pred             CcccCCEEEECCCCCCccccchHHH---HHHHHHHHHHhcC--CCEEEEeHHHHHHHHHhCCEEE-eCCCCcccceEEEE
Confidence            3567999999999888876667754   4778888888777  9999999999999999999985 44433333334444


Q ss_pred             eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047        194 FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQF  273 (350)
Q Consensus       194 ~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf  273 (350)
                      .+   ....++...+..+        .++.+|++.|.       .||++++++|+| +.+.   +++++..+ ++||+||
T Consensus       128 ~~---~~~~~~~~~~~~~--------~~~~~H~D~V~-------~LP~ga~~La~s-~~~~---~q~~~~~~-~~~g~Qf  184 (240)
T PRK05665        128 LA---AHAPWMSPAVTEL--------TLLISHQDQVT-------ALPEGATVIASS-DFCP---FAAYHIGD-QVLCFQG  184 (240)
T ss_pred             ec---CCCccccCCCCce--------EEEEEcCCeee-------eCCCCcEEEEeC-CCCc---EEEEEeCC-CEEEEec
Confidence            32   2344666665543        68999999997       899999999997 6666   88888765 7999999


Q ss_pred             cCCcCC
Q psy14047        274 HPEKNA  279 (350)
Q Consensus       274 HPE~~~  279 (350)
                      |||.+.
T Consensus       185 HPE~~~  190 (240)
T PRK05665        185 HPEFVH  190 (240)
T ss_pred             CCcCcH
Confidence            999774

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.91  E-value=1.3e-23  Score=184.94  Aligned_cols=165  Identities=20%  Similarity=0.281  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHcC---CeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhh
Q psy14047         32 PASYVKAVEASG---ARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSL  108 (350)
Q Consensus        32 ~~~yv~~l~~~G---~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (350)
                      ...|.++++++|   .++..++......  ...++.+|||++|||+.+.+   +                          
T Consensus        13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~---~--------------------------   61 (188)
T cd01741          13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVD---E--------------------------   61 (188)
T ss_pred             cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCC---c--------------------------
Confidence            578899999999   4666666655432  12267888888888875431   0                          


Q ss_pred             hhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee
Q psy14047        109 LKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE  188 (350)
Q Consensus       109 ~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~  188 (350)
                                             +...|..   .+.++++.+.+++  +|+||||+|||+|+.++||++. ......+..
T Consensus        62 -----------------------~~~~~~~---~~~~~i~~~~~~~--~pilgiC~G~q~l~~~lGG~v~-~~~~~~~~g  112 (188)
T cd01741          62 -----------------------DDYPWLK---KLKELIRQALAAG--KPVLGICLGHQLLARALGGKVG-RNPKGWEIG  112 (188)
T ss_pred             -----------------------cCChHHH---HHHHHHHHHHHCC--CCEEEECccHHHHHHHhCCEEe-cCCCcceeE
Confidence                                   0122222   2556666666666  9999999999999999999975 444333555


Q ss_pred             eeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccE
Q psy14047        189 NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPF  268 (350)
Q Consensus       189 ~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i  268 (350)
                      ..++.++.....+.++++.+..+        .++++|++.+.       .+|++++++|++ +++.   +++++.+ .++
T Consensus       113 ~~~v~~~~~~~~~~l~~~~~~~~--------~v~~~H~~~v~-------~lp~~~~~la~~-~~~~---v~~~~~~-~~~  172 (188)
T cd01741         113 WFPVTLTEAGKADPLFAGLPDEF--------PVFHWHGDTVV-------ELPPGAVLLASS-EACP---NQAFRYG-DRA  172 (188)
T ss_pred             EEEEEeccccccCchhhcCCCcc--------eEEEEeccChh-------hCCCCCEEeecC-CCCC---cceEEec-CCE
Confidence            66666655444556776665543        69999999997       799999999997 5555   7888886 589


Q ss_pred             EEEcccCC
Q psy14047        269 AGIQFHPE  276 (350)
Q Consensus       269 ~gvQfHPE  276 (350)
                      ||+|||||
T Consensus       173 ~g~QfHPE  180 (188)
T cd01741         173 LGLQFHPE  180 (188)
T ss_pred             EEEccCch
Confidence            99999999

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.90  E-value=4.9e-23  Score=211.91  Aligned_cols=183  Identities=17%  Similarity=0.229  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...+.++|++.|+.+..+++....+.+.  ....||||++||+.+..  +                              
T Consensus       529 ~~~l~~~L~~~G~~v~vv~~~~~~~~~~--~~~~DgLILsgGPGsp~--d------------------------------  574 (717)
T TIGR01815       529 VHTLANYLRQTGASVTTLRHSHAEAAFD--ERRPDLVVLSPGPGRPA--D------------------------------  574 (717)
T ss_pred             HHHHHHHHHHCCCeEEEEECCCChhhhh--hcCCCEEEEcCCCCCch--h------------------------------
Confidence            4678899999999998888765433322  24678888888875431  0                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                            ..       +.+++++..+.+  +||||||+|||+|+.++||++. ....+.++...+
T Consensus       575 ----------------------~~-------~~~~I~~~~~~~--iPvLGICLG~QlLa~a~GG~V~-~~~~p~~G~~~~  622 (717)
T TIGR01815       575 ----------------------FD-------VAGTIDAALARG--LPVFGVCLGLQGMVEAFGGALD-VLPEPVHGKASR  622 (717)
T ss_pred             ----------------------cc-------cHHHHHHHHHCC--CCEEEECHHHHHHhhhhCCEEE-ECCCCeeCcceE
Confidence                                  00       122334444444  9999999999999999999975 344455554444


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..+   ..+.+|.+++..+        .++++|++.+...     .||++++++|++ +++.   +++|++++.|+||+
T Consensus       623 V~~~---~~~~Lf~~lp~~~--------~v~~~HS~~~~~~-----~LP~~~~vlA~s-~d~~---v~Ai~~~~~~i~GV  682 (717)
T TIGR01815       623 IRVL---GPDALFAGLPERL--------TVGRYHSLFARRD-----RLPAELTVTAES-ADGL---IMAIEHRRLPLAAV  682 (717)
T ss_pred             EEEC---CCChhhhcCCCCC--------EEEEECCCCcccc-----cCCCCeEEEEEe-CCCc---EEEEEECCCCEEEE
Confidence            4332   2456888877654        6999999987433     689999999996 5544   99999998899999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      |||||+..++..            ..+..|+++|++.+...
T Consensus       683 QFHPEsi~T~sg------------~~G~~ilkNfl~~~~~~  711 (717)
T TIGR01815       683 QFHPESIMTLDG------------GAGLAMIGNVVDRLAAG  711 (717)
T ss_pred             EeCCeeCCccCc------------hhHHHHHHHHHHHHhhc
Confidence            999998643211            24789999999988654

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.90  E-value=4.2e-23  Score=198.27  Aligned_cols=159  Identities=19%  Similarity=0.285  Sum_probs=116.9

Q ss_pred             hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      +....++.|.+.|+.+.++|++.+.+++..  ...|||+|+||+.|..                                
T Consensus       250 ~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~--~~pDGIiLSnGPGDP~--------------------------------  295 (415)
T PLN02771        250 IKHNILRRLASYGCKITVVPSTWPASEALK--MKPDGVLFSNGPGDPS--------------------------------  295 (415)
T ss_pred             hHHHHHHHHHHcCCeEEEECCCCCHHHHhh--cCCCEEEEcCCCCChh--------------------------------
Confidence            457788999999999999999877665543  3789999999986531                                


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                              .+.    .+.+.+++.. .  ++||||||+|||+|+.++||++. ....++++.+.
T Consensus       296 ------------------------~~~----~~ie~ik~l~-~--~iPIlGICLGhQlLa~AlGGkv~-K~~~Gh~G~n~  343 (415)
T PLN02771        296 ------------------------AVP----YAVETVKELL-G--KVPVFGICMGHQLLGQALGGKTF-KMKFGHHGGNH  343 (415)
T ss_pred             ------------------------Hhh----HHHHHHHHHH-h--CCCEEEEcHHHHHHHHhcCCeEE-ECCCCcccceE
Confidence                                    011    1223334433 2  39999999999999999999975 45566677666


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      |+....   ...+               ..+.++|+++|++.     .||+++++++.+..|+.   ++++++++.|+||
T Consensus       344 pV~~~~---~~~v---------------~itsqnHg~aVd~~-----sLp~~~~vt~~nlnDgt---vegi~~~~~pi~g  397 (415)
T PLN02771        344 PVRNNR---TGRV---------------EISAQNHNYAVDPA-----SLPEGVEVTHVNLNDGS---CAGLAFPALNVMS  397 (415)
T ss_pred             EEEECC---CCCE---------------EEEecCHHHhhccc-----cCCCceEEEEEeCCCCc---EEEEEECCCCEEE
Confidence            764221   1111               14678999999654     68899999998744555   8999999999999


Q ss_pred             EcccCCcCCcc
Q psy14047        271 IQFHPEKNAYE  281 (350)
Q Consensus       271 vQfHPE~~~~~  281 (350)
                      +|||||..+.+
T Consensus       398 VQFHPEa~pgp  408 (415)
T PLN02771        398 LQYHPEASPGP  408 (415)
T ss_pred             EEcCCCCCCCC
Confidence            99999988654

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.90  E-value=4.4e-23  Score=187.71  Aligned_cols=161  Identities=18%  Similarity=0.162  Sum_probs=111.1

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ..+.++|++.|..+............ +-++.+||+|++||+.+++                                  
T Consensus        22 g~l~~~l~~~g~~~~v~~~~~~~~~p-~~l~~~dgvii~Ggp~~~~----------------------------------   66 (239)
T PRK06490         22 GRVGQLLQERGYPLDIRRPRLGDPLP-DTLEDHAGAVIFGGPMSAN----------------------------------   66 (239)
T ss_pred             hHHHHHHHHCCCceEEEeccCCCCCC-CcccccCEEEEECCCCCCC----------------------------------
Confidence            55778999999988776554221111 1256788888888886543                                  


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc-eeeeee
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC-FYENLA  191 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~-~~~~~~  191 (350)
                                         +..+|..   .+.++++++.+++  +||||||+|||+|+.++||+|. ....+. +.+..+
T Consensus        67 -------------------d~~~wi~---~~~~~i~~~~~~~--~PvLGIC~G~Qlla~alGG~V~-~~~~G~~e~G~~~  121 (239)
T PRK06490         67 -------------------DPDDFIR---REIDWISVPLKEN--KPFLGICLGAQMLARHLGARVA-PHPDGRVEIGYYP  121 (239)
T ss_pred             -------------------CCchHHH---HHHHHHHHHHHCC--CCEEEECHhHHHHHHHcCCEee-cCCCCCCccceEE
Confidence                               1223332   2567777777776  9999999999999999999985 333222 334445


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..+.   ...++..++          ..++++|++.+        .||++++++|+| +++.   ++++++.+ ++||+
T Consensus       122 i~~~~---~~~~~~~~~----------~~~~~~H~d~~--------~lP~~~~~LA~s-~~~~---~qa~~~~~-~v~g~  175 (239)
T PRK06490        122 LRPTE---AGRALMHWP----------EMVYHWHREGF--------DLPAGAELLATG-DDFP---NQAFRYGD-NAWGL  175 (239)
T ss_pred             eEECC---CcccccCCC----------CEEEEECCccc--------cCCCCCEEEEeC-CCCC---eEEEEeCC-CEEEE
Confidence            54432   222333332          24889999984        799999999997 6666   78999865 79999


Q ss_pred             cccCCcCC
Q psy14047        272 QFHPEKNA  279 (350)
Q Consensus       272 QfHPE~~~  279 (350)
                      |||||++.
T Consensus       176 QfHPE~~~  183 (239)
T PRK06490        176 QFHPEVTR  183 (239)
T ss_pred             eeCccCCH
Confidence            99999773

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.90  E-value=1.3e-22  Score=203.29  Aligned_cols=131  Identities=17%  Similarity=0.212  Sum_probs=96.8

Q ss_pred             ccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047        157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD  236 (350)
Q Consensus       157 ~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~  236 (350)
                      +||||||+|||+|+.++||+|. ......++....+..    .+..+|.+++..+        .++.||++.+.      
T Consensus        78 iPILGIClG~QlLa~a~GG~V~-~~~~~~~G~~~~i~~----~~~~lf~~~~~~~--------~v~~~Hs~~v~------  138 (531)
T PRK09522         78 LPIIGICLGHQAIVEAYGGYVG-QAGEILHGKASSIEH----DGQAMFAGLTNPL--------PVARYHSLVGS------  138 (531)
T ss_pred             CCEEEEcHHHHHHHHhcCCEEE-eCCceeeeeEEEEee----cCCccccCCCCCc--------EEEEehheecc------
Confidence            9999999999999999999985 332223333222221    2345787776643        69999999996      


Q ss_pred             ccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCC
Q psy14047        237 NGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSF  316 (350)
Q Consensus       237 ~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~  316 (350)
                       .+|++++++|+  +++.   ++++++++.++||+|||||+..++               .+..++++|++.|.+.....
T Consensus       139 -~lP~~l~vlA~--sd~~---v~ai~~~~~~i~GVQFHPEs~~T~---------------~G~~il~NFl~~~~~~~~~~  197 (531)
T PRK09522        139 -NIPAGLTINAH--FNGM---VMAVRHDADRVCGFQFHPESILTT---------------QGARLLEQTLAWAQQKLEPT  197 (531)
T ss_pred             -cCCCCcEEEEe--cCCC---EEEEEECCCCEEEEEecCccccCc---------------chHHHHHHHHHHHhhcCCCC
Confidence             79999999997  4554   899999988999999999988654               37899999999996644444


Q ss_pred             CCHHHHHHhhh
Q psy14047        317 ETEEEEKAALI  327 (350)
Q Consensus       317 ~~~~~~~~~l~  327 (350)
                      -+-.+..+.+.
T Consensus       198 ~~~~~~l~~~~  208 (531)
T PRK09522        198 NTLQPILEKLY  208 (531)
T ss_pred             CCHHHHHHHhh
Confidence            44444444443

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.89  E-value=8.4e-23  Score=185.30  Aligned_cols=167  Identities=19%  Similarity=0.178  Sum_probs=117.2

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .++.++|++.|..+..++......... -++.+||||++||+.+++..                                
T Consensus        17 g~i~~~L~~~g~~~~v~~~~~~~~~~~-~~~~~d~lii~Ggp~~~~d~--------------------------------   63 (234)
T PRK07053         17 GSFEQVLGARGYRVRYVDVGVDDLETL-DALEPDLLVVLGGPIGVYDD--------------------------------   63 (234)
T ss_pred             hHHHHHHHHCCCeEEEEecCCCccCCC-CccCCCEEEECCCCCCCCCC--------------------------------
Confidence            456789999999887777643321011 14578889999988655310                                


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                         +...|..   .+.++++++.+++  +||||||+|+|+|+.++||+|. ... ..+.+..++
T Consensus        64 -------------------~~~p~~~---~~~~~i~~~~~~~--~PvlGIC~G~Qlla~alGg~V~-~~~-~~e~G~~~i  117 (234)
T PRK07053         64 -------------------ELYPFLA---PEIALLRQRLAAG--LPTLGICLGAQLIARALGARVY-PGG-QKEIGWAPL  117 (234)
T ss_pred             -------------------CcCCcHH---HHHHHHHHHHHCC--CCEEEECccHHHHHHHcCCcEe-cCC-CCeEeEEEE
Confidence                               0112222   2567777777776  9999999999999999999985 332 334456677


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..++....++++ .++..        ..++++|++.+        .||++++++|+| +.+.   +++++..+ ++||+|
T Consensus       118 ~~t~~g~~~pl~-~~~~~--------~~~~~~H~d~~--------~lP~ga~~La~s-~~~~---~qaf~~g~-~~~g~Q  175 (234)
T PRK07053        118 TLTDAGRASPLR-HLGAG--------TPVLHWHGDTF--------DLPEGATLLAST-PACR---HQAFAWGN-HVLALQ  175 (234)
T ss_pred             EEeccccCChhh-cCCCc--------ceEEEEeCCEE--------ecCCCCEEEEcC-CCCC---eeEEEeCC-CEEEEe
Confidence            766655455553 34332        36899999988        699999999997 6666   77888754 799999


Q ss_pred             ccCCcCCc
Q psy14047        273 FHPEKNAY  280 (350)
Q Consensus       273 fHPE~~~~  280 (350)
                      ||||++..
T Consensus       176 fHpE~~~~  183 (234)
T PRK07053        176 FHPEARED  183 (234)
T ss_pred             eCccCCHH
Confidence            99998854

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.89  E-value=1.5e-22  Score=180.48  Aligned_cols=155  Identities=25%  Similarity=0.321  Sum_probs=101.3

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCcc-ccCCccCceeeee---
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNEN-ELRTRCDCFYENL---  190 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v-~~~~~~~~~~~~~---  190 (350)
                      ++++|+||+||++++..++..+.+.  .+.+.++++.+++  +||||||+|||+|+...++.. .++...+......   
T Consensus        37 l~~~d~iIlPG~g~~~~~~~~l~~~--gl~~~i~~~~~~~--~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~  112 (210)
T CHL00188         37 LAQVHALVLPGVGSFDLAMKKLEKK--GLITPIKKWIAEG--NPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHS  112 (210)
T ss_pred             hhhCCEEEECCCCchHHHHHHHHHC--CHHHHHHHHHHcC--CCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCC
Confidence            5678999999999976555555432  3667788887776  999999999999999876542 2233333222211   


Q ss_pred             -----------eceeecCC---CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCC-c
Q psy14047        191 -----------ALEFMPSF---RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRG-L  255 (350)
Q Consensus       191 -----------~i~~~~~~---~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~-~  255 (350)
                                 +++.+...   .++.+|.++++.        ..++++|++.+.         |++...++.+ ..++ .
T Consensus       113 ~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~--------~~v~~~HS~~v~---------p~~~~~l~~t-~~~~~~  174 (210)
T CHL00188        113 PVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN--------PWAYFVHSYGVM---------PKSQACATTT-TFYGKQ  174 (210)
T ss_pred             CCCccCccCCccceecCCcccccCChhhcCCCCC--------CEEEEeCccEec---------CCCCceEEEE-EecCCc
Confidence                       11111110   013466666554        479999999884         2334444443 3332 4


Q ss_pred             eEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047        256 KFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA  309 (350)
Q Consensus       256 e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~  309 (350)
                      .++++++..  ++||+|||||++ .               ..+..+.++|++.+
T Consensus       175 ~~v~a~~~~--~i~GvQFHPE~s-~---------------~~G~~il~nfl~~~  210 (210)
T CHL00188        175 QMVAAIEYD--NIFAMQFHPEKS-G---------------EFGLWLLREFMKKA  210 (210)
T ss_pred             ceEEEEecC--CEEEEecCCccc-c---------------HhHHHHHHHHHhhC
Confidence            579999963  899999999987 2               24788999998753

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.89  E-value=1.7e-22  Score=183.65  Aligned_cols=112  Identities=20%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEE
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITH  222 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~  222 (350)
                      +.++++++.+++  +||||||+|+|+|+.++||+|. .... .+.+..++.+++....+++|+.+++.+        .++
T Consensus        73 ~~~~i~~~~~~~--~PvlGIC~G~Qlla~alGg~V~-~~~~-~e~G~~~v~lt~~g~~d~l~~~~~~~~--------~v~  140 (235)
T PRK08250         73 EQRLINQAIKAG--KAVIGVCLGAQLIGEALGAKYE-HSPE-KEIGYFPITLTEAGLKDPLLSHFGSTL--------TVG  140 (235)
T ss_pred             HHHHHHHHHHcC--CCEEEEChhHHHHHHHhCceec-cCCC-CceeEEEEEEccccccCchhhcCCCCc--------EEE
Confidence            456677777666  9999999999999999999985 4443 344456777777666777888877654        589


Q ss_pred             EeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCC
Q psy14047        223 NWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNA  279 (350)
Q Consensus       223 ~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~  279 (350)
                      ++|++.+        .||+++++||+| +.+.   +++++..+ ++||+|||||.+.
T Consensus       141 ~~H~d~~--------~lP~~a~~LA~s-~~~~---~qa~~~~~-~~~g~QfHPE~~~  184 (235)
T PRK08250        141 HWHNDMP--------GLTDQAKVLATS-EGCP---RQIVQYSN-LVYGFQCHMEFTV  184 (235)
T ss_pred             EEeccee--------cCCCCCEEEECC-CCCC---ceEEEeCC-CEEEEeecCcCCH
Confidence            9999975        699999999997 6665   77888765 6999999999774

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.89  E-value=3.2e-22  Score=201.65  Aligned_cols=118  Identities=20%  Similarity=0.380  Sum_probs=90.7

Q ss_pred             ccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047        157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD  236 (350)
Q Consensus       157 ~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~  236 (350)
                      +||||||+|||+|+.++||++. ......++...++..    ..+.+|.+++..+        .++++|++++...    
T Consensus        74 ~PvLGIClG~QlLa~a~Gg~V~-~~~~~~~G~~~~v~~----~~~~lf~~~~~~~--------~v~~~Hs~~v~~~----  136 (534)
T PRK14607         74 VPILGVCLGHQAIGYAFGGKIV-HAKRILHGKTSPIDH----NGKGLFRGIPNPT--------VATRYHSLVVEEA----  136 (534)
T ss_pred             CCEEEEcHHHHHHHHHcCCeEe-cCCccccCCceeEEE----CCCcchhcCCCCc--------EEeeccchheecc----
Confidence            9999999999999999999974 333333444333332    2345777776543        5899999998532    


Q ss_pred             ccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        237 NGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       237 ~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                       .+|++++++|++ +++.   +++++++++|+||+|||||+..++               .+..++++|++.|+.
T Consensus       137 -~lp~~~~vlA~s-~d~~---i~a~~~~~~pi~GvQFHPE~~~t~---------------~g~~i~~nFl~~~~~  191 (534)
T PRK14607        137 -SLPECLEVTAKS-DDGE---IMGIRHKEHPIFGVQFHPESILTE---------------EGKRILKNFLNYQRE  191 (534)
T ss_pred             -cCCCCeEEEEEc-CCCC---EEEEEECCCCEEEEEeCCCCCCCh---------------hHHHHHHHHHHHhhc
Confidence             589999999997 6665   999999998999999999976432               377899999998864

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.88  E-value=2.4e-22  Score=182.18  Aligned_cols=139  Identities=22%  Similarity=0.268  Sum_probs=83.8

Q ss_pred             HHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCce----eeeeece-eecC-------CC-----CCcccccCC
Q psy14047        146 IAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCF----YENLALE-FMPS-------FR-----QSLLYSRAP  208 (350)
Q Consensus       146 ~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~----~~~~~i~-~~~~-------~~-----~~~lf~~~~  208 (350)
                      .++.+.+.+  +|+||||+|||+|+.++||++..+......    ....|+. ....       ..     .+.+ ...+
T Consensus        76 ~i~~~~~~~--~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v-~i~~  152 (235)
T cd01746          76 AIKYARENN--IPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPV-ILKP  152 (235)
T ss_pred             HHHHHHHCC--ceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEE-EECC
Confidence            344444555  999999999999999999987432222111    0111111 0000       00     0111 0112


Q ss_pred             chhH-Hhhccc-ceEEEeecceeecCCCcccc-ccccceEEEEeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccc
Q psy14047        209 IHVL-QELATS-HITHNWHMWCITPSNFTDNG-LAKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKL  284 (350)
Q Consensus       209 ~~~~-~~~~~~-~~v~~~H~~~v~~~~~~~~~-L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~  284 (350)
                      .+.. ..++.+ ..++++|+++|.++.+.  . ++++++++|++ .+++  +|+++|.+++|++ |+|||||......  
T Consensus       153 ~s~l~~~~g~~~~~~n~~H~~~v~~~~~~--~~~~~~l~v~a~~-~ddg--~ieaie~~~~pf~lgvQ~HPE~~~~~~--  225 (235)
T cd01746         153 GTLAHKYYGKDEVEERHRHRYEVNPEYVD--ELEEAGLRFSGTD-PDGG--LVEIVELPDHPFFVGTQFHPEFKSRPL--  225 (235)
T ss_pred             CChHHHHhCCCEEEEecCcccccCHHHHH--HHhhCCeEEEEEe-CCCC--eEEEEEcCCCCcEEEEECCCCCcCCCC--
Confidence            2222 223333 46899999999654332  3 37899999997 5344  6999999999987 9999999764211  


Q ss_pred             cCCCCCchHHHHhHHHHHHHHH
Q psy14047        285 TQDNPHTRIAIENARYFFDWLV  306 (350)
Q Consensus       285 ~~~~~h~~~~~~~~~~i~~~Fv  306 (350)
                                  ..+.+|..|+
T Consensus       226 ------------~~~~lF~~fv  235 (235)
T cd01746         226 ------------KPHPLFVGFV  235 (235)
T ss_pred             ------------CccHHHHHhC
Confidence                        1457888874

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.88  E-value=8.4e-22  Score=205.15  Aligned_cols=127  Identities=23%  Similarity=0.319  Sum_probs=98.4

Q ss_pred             ccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047        157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD  236 (350)
Q Consensus       157 ~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~  236 (350)
                      +||||||+|||+|+.++||++. ....+.++....+..    .+..||.++|...    +....|..||+..++..    
T Consensus       163 iPILGICLGhQ~i~~~~Gg~V~-~~~~~~HG~~s~I~h----~~~~lF~glp~~~----~~~f~v~RYHSL~v~~~----  229 (918)
T PLN02889        163 IPILGVCLGHQALGYVHGARIV-HAPEPVHGRLSEIEH----NGCRLFDDIPSGR----NSGFKVVRYHSLVIDAE----  229 (918)
T ss_pred             CcEEEEcHHHHHHHHhcCceEE-eCCCceeeeeeeEee----cCchhhcCCCcCC----CCCceEEeCCCcccccC----
Confidence            9999999999999999999985 555566776555543    2456899887621    01236999999999643    


Q ss_pred             ccccccceEEEEeecCCC--------------------------------------------------ceEEEEEEcCCc
Q psy14047        237 NGLAKEWKVLSTNSNNRG--------------------------------------------------LKFISSVEHKVY  266 (350)
Q Consensus       237 ~~L~~~~~vla~s~~~~~--------------------------------------------------~e~v~ai~~~~~  266 (350)
                       .||++++++|++ ++..                                                  ...+|+++|+..
T Consensus       230 -~lP~~L~~~A~t-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~  307 (918)
T PLN02889        230 -SLPKELVPIAWT-SSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTR  307 (918)
T ss_pred             -CCCCceEEEEEE-CCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCC
Confidence             589999999986 3310                                                  036999999999


Q ss_pred             cEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047        267 PFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH  313 (350)
Q Consensus       267 ~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~  313 (350)
                      |+||+|||||...++               .+..|+++|++.|+...
T Consensus       308 P~~GVQfHPESi~t~---------------~G~~l~~nF~~~~~~~~  339 (918)
T PLN02889        308 PHYGLQFHPESIATC---------------YGRQIFKNFREITQDYW  339 (918)
T ss_pred             ceEEEEeCCccccCc---------------hhHHHHHHHHHHHHHHh
Confidence            999999999987653               37899999999998653

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.88  E-value=5e-22  Score=175.84  Aligned_cols=149  Identities=19%  Similarity=0.298  Sum_probs=95.5

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc--cccCCccCceeeee-
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE--NELRTRCDCFYENL-  190 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~--v~~~~~~~~~~~~~-  190 (350)
                      .++++|+||+||+|.+..+++.+.+.  .+.+.++++   +  +||||||+|||+|+.++++.  ...+...+...... 
T Consensus        35 ~~~~~d~iIlPG~G~~~~~~~~l~~~--~l~~~i~~~---~--~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~  107 (196)
T PRK13170         35 VILAADKLFLPGVGTAQAAMDQLRER--ELIDLIKAC---T--QPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMT  107 (196)
T ss_pred             HhCCCCEEEECCCCchHHHHHHHHHc--ChHHHHHHc---C--CCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECC
Confidence            46779999999999987666555433  356666654   3  99999999999999998442  22222222222110 


Q ss_pred             ------e---ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEE
Q psy14047        191 ------A---LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSV  261 (350)
Q Consensus       191 ------~---i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai  261 (350)
                            |   .+.+....++++|+.++..        ..++++|++.+          |++..++|++ + .+..++.++
T Consensus       108 ~~~~~~p~~G~~~v~~~~~~~l~~~l~~~--------~~v~~~Hs~~l----------p~~~~~la~s-~-~~~~~~~~~  167 (196)
T PRK13170        108 DFGLPLPHMGWNQVTPQAGHPLFQGIEDG--------SYFYFVHSYAM----------PVNEYTIAQC-N-YGEPFSAAI  167 (196)
T ss_pred             CCCCCCCccccceeEeCCCChhhhCCCcC--------CEEEEECeeec----------CCCCcEEEEe-c-CCCeEEEEE
Confidence                  1   0111112345566666554        47999999755          4455688885 3 334455555


Q ss_pred             EcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        262 EHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       262 ~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      +.  .++||+|||||++. +               .+..++++|++
T Consensus       168 ~~--~~i~G~QFHPE~~~-~---------------~G~~~l~nfl~  195 (196)
T PRK13170        168 QK--DNFFGVQFHPERSG-A---------------AGAQLLKNFLE  195 (196)
T ss_pred             Ec--CCEEEEECCCCCcc-c---------------ccHHHHHHHhh
Confidence            54  46999999999874 2               36788888874

>KOG3179|consensus

Probab=99.88  E-value=2e-22  Score=171.78  Aligned_cols=189  Identities=14%  Similarity=0.179  Sum_probs=140.9

Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                      .++|++|||++|+|+........+|..   .|...+++.....  +||+|||+|||+|+.+.||.+. +.+.+..-....
T Consensus        54 ~~Dl~ky~gfvIsGS~~dAf~d~dWI~---KLcs~~kkld~mk--kkvlGICFGHQiiara~Gg~Vg-ra~KG~~~~lg~  127 (245)
T KOG3179|consen   54 EEDLEKYDGFVISGSKHDAFSDADWIK---KLCSFVKKLDFMK--KKVLGICFGHQIIARAKGGKVG-RAPKGPDLGLGS  127 (245)
T ss_pred             hhhhhhhceEEEeCCcccccccchHHH---HHHHHHHHHHhhc--cceEEEeccHHHHHHhhCCccc-cCCCCCcccccc
Confidence            467888999999999887766666755   4788888877665  9999999999999999999974 555542211111


Q ss_pred             ceee-cCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        192 LEFM-PSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       192 i~~~-~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      +..+ ........|+.+|..+        .....|++.+.       .+|++++++|.| +.+.   ++.+..++ ++++
T Consensus       128 itivk~~~~~~~yFG~~~~~l--------~IikcHqDevl-------e~PE~a~llasS-e~ce---ve~fs~~~-~~l~  187 (245)
T KOG3179|consen  128 ITIVKDAEKPEKYFGEIPKSL--------NIIKCHQDEVL-------ELPEGAELLASS-EKCE---VEMFSIED-HLLC  187 (245)
T ss_pred             eEEEEecccchhhcccchhhh--------hHHhhccccee-------cCCchhhhhccc-cccc---eEEEEecc-eEEE
Confidence            2111 1233556788777765        36788999998       899999999998 7777   77888776 7999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHhhhhcccc
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCP  332 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~~~~~~l~~n~~~  332 (350)
                      +|.|||.+.....      .-.+-+.....+-..|.+.|++.+..+....+++..|+.||-.
T Consensus       188 fQGHPEyn~eil~------~ivdrv~~~k~~~eef~~~ak~~~En~~~d~~~~~~icKnfLk  243 (245)
T KOG3179|consen  188 FQGHPEYNKEILF------EIVDRVLGTKLVEEEFAEKAKKTMENPEPDRQLAVSICKNFLK  243 (245)
T ss_pred             ecCCchhhHHHHH------HHHHHHhcchhhHHHHHHHHHHhhhCCCccHHHHHHHHHHHhc
Confidence            9999997632110      0111223346677799999999999999999999999999853

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=1e-21  Score=175.27  Aligned_cols=153  Identities=25%  Similarity=0.277  Sum_probs=101.1

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh------------cCccccCC
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS------------NNENELRT  181 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~------------Gg~v~~~~  181 (350)
                      +++++|+||+||++.+..+...+...  .+.++++++.+++  +|+||||+|+|+|+.++            +|++. ..
T Consensus        34 ~l~~~d~iiipG~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~-~~  108 (205)
T PRK13141         34 EILAADGVILPGVGAFPDAMANLRER--GLDEVIKEAVASG--KPLLGICLGMQLLFESSEEFGETEGLGLLPGRVR-RF  108 (205)
T ss_pred             HhccCCEEEECCCCchHHHHHHHHHc--ChHHHHHHHHHCC--CcEEEECHHHHHhhhccccCCCCCccceEEEEEE-Ec
Confidence            46789999999987754322222111  3567788877776  99999999999999973            33322 11


Q ss_pred             ccC-----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCce
Q psy14047        182 RCD-----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLK  256 (350)
Q Consensus       182 ~~~-----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e  256 (350)
                      ..+     .+.+..++..   ..++++|+.++..+        .++.+|++.+        .+++++.++|++ +++ .+
T Consensus       109 ~~~~~~~~~~~g~~~i~~---~~~~~l~~~l~~~~--------~v~~~Hs~~v--------~~~~~~~v~a~~-~~~-~~  167 (205)
T PRK13141        109 PPEEGLKVPHMGWNQLEL---KKESPLLKGIPDGA--------YVYFVHSYYA--------DPCDEEYVAATT-DYG-VE  167 (205)
T ss_pred             CCCCCCcccEecCcccee---CCCChhhhCCCCCC--------EEEEECeeEe--------ccCCcCeEEEEE-eCC-cE
Confidence            100     0111122221   23567777766543        5889999988        467788999986 444 33


Q ss_pred             EEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        257 FISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       257 ~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                       ++++... .++||+|||||+..                ..+..++++|++.|+
T Consensus       168 -~~a~~~~-~~i~GvQfHPE~~~----------------~~g~~l~~~fl~~~~  203 (205)
T PRK13141        168 -FPAAVGK-DNVFGAQFHPEKSG----------------DVGLKILKNFVEMVE  203 (205)
T ss_pred             -EEEEEec-CCEEEEeCCCccch----------------HHHHHHHHHHHHHhh
Confidence             5566544 48999999999753                247899999999984

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.87  E-value=4.5e-21  Score=170.42  Aligned_cols=188  Identities=20%  Similarity=0.246  Sum_probs=118.8

Q ss_pred             EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047          8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG   87 (350)
Q Consensus         8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~   87 (350)
                      .|||+.....         ..++ ..++.+++++.|..+..+....+ +    -++..|+|+||||+....         
T Consensus         2 ~i~vl~~~~~---------~~e~-~~~~~~~l~~~g~~~~~~~~~~~-~----~l~~~d~iii~GG~~~~~---------   57 (200)
T PRK13527          2 KIGVLALQGD---------VEEH-IDALKRALDELGIDGEVVEVRRP-G----DLPDCDALIIPGGESTTI---------   57 (200)
T ss_pred             EEEEEEECCc---------cHHH-HHHHHHHHHhcCCCeEEEEeCCh-H----HhccCCEEEECCCcHHHH---------
Confidence            3788876542         1122 24666788889987666665432 1    246789999999874321         


Q ss_pred             eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047         88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ  167 (350)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q  167 (350)
                                                                    +.+... ..+.++++++.+++  +||||||+|+|
T Consensus        58 ----------------------------------------------~~~~~~-~~~~~~i~~~~~~~--~pilGIC~G~Q   88 (200)
T PRK13527         58 ----------------------------------------------GRLMKR-EGILDEIKEKIEEG--LPILGTCAGLI   88 (200)
T ss_pred             ----------------------------------------------HHHHhh-ccHHHHHHHHHHCC--CeEEEECHHHH
Confidence                                                          011000 02567778877777  99999999999


Q ss_pred             HHHHHhcCc-cccCCccCceeeeeeceeecC--C------CCCcccccCCchhHHhhcccceEEEeecceeecCCCcccc
Q psy14047        168 LLLYTSNNE-NELRTRCDCFYENLALEFMPS--F------RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG  238 (350)
Q Consensus       168 lLa~a~Gg~-v~~~~~~~~~~~~~~i~~~~~--~------~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~  238 (350)
                      +|+.++||. +.. ...... +..+...+..  .      ....+|..++..        ..++++|++.+.       .
T Consensus        89 ll~~~~gg~~v~~-~~~~~l-G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~H~~~v~-------~  151 (200)
T PRK13527         89 LLAKEVGDDRVTK-TEQPLL-GLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP--------FHAVFIRAPAIT-------K  151 (200)
T ss_pred             HHHhhhcCCccCC-CCCcee-eeeEEEEeeccccCccccEEEeEeccccCCc--------ceEEEEcccccc-------c
Confidence            999999984 321 111111 1223222111  0      012234444443        368999999997       7


Q ss_pred             ccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        239 LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       239 L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      +|++++++|++ +++    +++++.  .++||+|||||.+.                  ...++++|++.++
T Consensus       152 lp~~~~~la~~-~~~----~~a~~~--~~~~g~QfHPE~~~------------------~~~l~~~f~~~~~  198 (200)
T PRK13527        152 VGGDVEVLAKL-DDR----IVAVEQ--GNVLATAFHPELTD------------------DTRIHEYFLKKVK  198 (200)
T ss_pred             cCCCeEEEEEE-CCE----EEEEEE--CCEEEEEeCCCCCC------------------CCHHHHHHHHHHh
Confidence            99999999986 443    335553  37999999999663                  2589999999874

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=2.7e-21  Score=171.94  Aligned_cols=153  Identities=24%  Similarity=0.276  Sum_probs=95.9

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHH-hhCCCCccEEEehHHHHHHHHH--hcCccccCCccCceeeee
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEF-NENRDYFPIMGICLGFQLLLYT--SNNENELRTRCDCFYENL  190 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~-~~~g~~~PIlGIC~G~QlLa~a--~Gg~v~~~~~~~~~~~~~  190 (350)
                      .+..+|+||+||++++..++..+....  +.+.++++ .+.+  +||||||+|||+|+.+  .||....++..+......
T Consensus        34 ~l~~~d~lilPG~g~~~~~~~~l~~~~--~~~~l~~~~~~~~--~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~  109 (201)
T PRK13152         34 DLQKADKLLLPGVGSFKEAMKNLKELG--FIEALKEQVLVQK--KPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKF  109 (201)
T ss_pred             HHcCCCEEEECCCCchHHHHHHHHHcC--cHHHHHHHHHhCC--CcEEEECHhHHHHhhcccccCCcCCcccccEEEEEC
Confidence            456799999999999765544443322  44555554 3455  9999999999999997  233332233222221110


Q ss_pred             e-----------ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEE
Q psy14047        191 A-----------LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFIS  259 (350)
Q Consensus       191 ~-----------i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~  259 (350)
                      +           .+.+....++++|+.++..        ..++++|++.+.       .++  ..+.+++ .+ +..+++
T Consensus       110 ~~~~~~~~~~~g~~~v~~~~~~~l~~~l~~~--------~~~~~vHS~~v~-------~~~--~~v~a~~-~~-g~~~~~  170 (201)
T PRK13152        110 EEDLNLKIPHMGWNELEILKQSPLYQGIPEK--------SDFYFVHSFYVK-------CKD--EFVSAKA-QY-GHKFVA  170 (201)
T ss_pred             CCCCCCcCCccCeEEEEECCCChhhhCCCCC--------CeEEEEcccEee-------cCC--CcEEEEE-CC-CCEEEE
Confidence            0           0111223356677766543        368999999996       232  4566764 33 334577


Q ss_pred             EEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        260 SVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       260 ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      +++.  .++||+|||||++.                ..+..++++|++
T Consensus       171 a~~~--~~i~GvQFHPE~~~----------------~~g~~ll~~Fl~  200 (201)
T PRK13152        171 SLQK--DNIFATQFHPEKSQ----------------NLGLKLLENFAR  200 (201)
T ss_pred             EEec--CCEEEEeCCCeecC----------------hhhHHHHHHHHh
Confidence            7774  37999999999762                136789999975

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=1.6e-21  Score=173.14  Aligned_cols=150  Identities=25%  Similarity=0.349  Sum_probs=96.4

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh-----------cCccccCCc
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS-----------NNENELRTR  182 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~-----------Gg~v~~~~~  182 (350)
                      .++++|+||+||++.+......+...  .+.+.++++.+++  +||||||+|+|+|+.+.           ++++. ...
T Consensus        34 ~l~~~d~lilpG~g~~~~~~~~l~~~--~~~~~i~~~~~~~--~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~-~~~  108 (199)
T PRK13181         34 EIAGADKVILPGVGAFGQAMRSLRES--GLDEALKEHVEKK--QPVLGICLGMQLLFESSEEGNVKGLGLIPGDVK-RFR  108 (199)
T ss_pred             HhccCCEEEECCCCCHHHHHHHHHHC--ChHHHHHHHHHCC--CCEEEECHhHHHhhhhcccCCcCCcceEEEEEE-EcC
Confidence            35679999999998765433222221  2557777777777  99999999999999984           33332 111


Q ss_pred             cC----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEE
Q psy14047        183 CD----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFI  258 (350)
Q Consensus       183 ~~----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v  258 (350)
                      .+    .+.+..++.   ...++++|+.++..        ..++++|++.+.        .++.+.++|++ +. +..++
T Consensus       109 ~~~~~~~~~G~~~v~---~~~~~~lf~~l~~~--------~~~~~~Hs~~v~--------~~~~~~~lA~s-~~-~~~~~  167 (199)
T PRK13181        109 SEPLKVPQMGWNSVK---PLKESPLFKGIEEG--------SYFYFVHSYYVP--------CEDPEDVLATT-EY-GVPFC  167 (199)
T ss_pred             CCCCCCCccCccccc---cCCCChhHcCCCCC--------CEEEEeCeeEec--------cCCcccEEEEE-cC-CCEEE
Confidence            00    011111221   12356677776654        368999999885        23345688886 43 34456


Q ss_pred             EEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        259 SSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       259 ~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      ++++.  .++||+|||||++.                +.+..++++|++
T Consensus       168 ~~~~~--~~i~GvQFHPE~~~----------------~~g~~ll~nfl~  198 (199)
T PRK13181        168 SAVAK--DNIYAVQFHPEKSG----------------KAGLKLLKNFAE  198 (199)
T ss_pred             EEEEC--CCEEEEECCCccCC----------------HHHHHHHHHHHh
Confidence            66664  37999999999762                247888998875

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=1.4e-21  Score=174.73  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=97.1

Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHh-hCCCCccEEEehHHHHHHHHH------------hcCcccc
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFN-ENRDYFPIMGICLGFQLLLYT------------SNNENEL  179 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~-~~g~~~PIlGIC~G~QlLa~a------------~Gg~v~~  179 (350)
                      ++++++|+||+||++++..+...+.+.  .+.+.++++. +++  +||||||+|||+|+.+            ++|++..
T Consensus        37 ~~l~~~d~lIlpG~~~~~~~~~~l~~~--~~~~~~~~~~~~~~--~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~  112 (209)
T PRK13146         37 DAVAAADRVVLPGVGAFADCMRGLRAV--GLGEAVIEAVLAAG--RPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVR  112 (209)
T ss_pred             HHhcCCCEEEECCCCcHHHHHHHHHHC--CcHHHHHHHHHhCC--CcEEEECHHHHHHhhcccccCCCCCcceEeEEEEE
Confidence            457899999999988765433333322  1344444433 455  9999999999999998            4444321


Q ss_pred             CCccC-----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCC
Q psy14047        180 RTRCD-----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRG  254 (350)
Q Consensus       180 ~~~~~-----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~  254 (350)
                      ....+     .+.++.++.   ....+++|++++..+        .++++|++.+.       .++ ...++|++ +.+.
T Consensus       113 ~~~~~~~~~~p~~G~~~v~---~~~~~~lf~~~~~~~--------~v~~~Hs~~v~-------~~~-~~~~la~s-~~~~  172 (209)
T PRK13146        113 FQPDGPALKVPHMGWNTVD---QTRDHPLFAGIPDGA--------RFYFVHSYYAQ-------PAN-PADVVAWT-DYGG  172 (209)
T ss_pred             cCCCCCCCccCccChHHee---eCCCChhccCCCCCC--------EEEEEeEEEEE-------cCC-CCcEEEEE-cCCC
Confidence            10000     001111221   223566788776543        69999999996       333 56888986 4433


Q ss_pred             ceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047        255 LKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA  309 (350)
Q Consensus       255 ~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~  309 (350)
                       + ++++..+ .++||+|||||++.                ..+..++++|++.+
T Consensus       173 -~-~~a~~~~-~~i~GvQFHPE~s~----------------~~G~~ll~nfl~~~  208 (209)
T PRK13146        173 -P-FTAAVAR-DNLFATQFHPEKSQ----------------DAGLALLRNFLAWL  208 (209)
T ss_pred             -E-EEEEEec-CCEEEEEcCCcccH----------------HHHHHHHHHHHhhc
Confidence             2 4455443 58999999999762                24778899998763

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.86  E-value=4.3e-21  Score=171.20  Aligned_cols=157  Identities=19%  Similarity=0.209  Sum_probs=101.2

Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcC--------ccccCCcc
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNN--------ENELRTRC  183 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg--------~v~~~~~~  183 (350)
                      ++.+.++|+||+||++++..++..+.+.  .|.+.++++.+++  +||||||+|||+|+.+++.        .+.+++..
T Consensus        32 ~~~l~~~d~iIlPG~g~~~~~~~~l~~~--gl~~~i~~~~~~~--~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~  107 (210)
T PRK14004         32 PETIENSKALILPGDGHFDKAMENLNST--GLRSTIDKHVESG--KPLFGICIGFQILFESSEETNQGTKKEQIEGLGYI  107 (210)
T ss_pred             HHHhccCCEEEECCCCchHHHHHHHHHc--CcHHHHHHHHHcC--CCEEEECHhHHHHHHhcccccCCCcCcccCCccee
Confidence            3456799999999999887666555443  4788888888777  9999999999999998752        12233322


Q ss_pred             Cceeee-------------eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEee
Q psy14047        184 DCFYEN-------------LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNS  250 (350)
Q Consensus       184 ~~~~~~-------------~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~  250 (350)
                      +.....             .+++..+ ...+++|.+++..        ..++++|++.+.        .+..+.+++++ 
T Consensus       108 ~~~v~~~~~~~~~~ph~Gw~~v~~~~-~~~~~lf~~l~~~--------~~v~~~HS~~~~--------~~~~l~~sa~~-  169 (210)
T PRK14004        108 KGKIKKFEGKDFKVPHIGWNRLQIRR-KDKSKLLKGIGDQ--------SFFYFIHSYRPT--------GAEGNAITGLC-  169 (210)
T ss_pred             EEEEEEcCCCCCcCCccCcccceecc-CCCCccccCCCCC--------CEEEEeceeecC--------CCCcceEEEee-
Confidence            222111             1111111 1345577777654        469999998552        22334555554 


Q ss_pred             cCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        251 NNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       251 ~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      +..+.. ++++. .+.++||+|||||++. +               .+..+.++|++.
T Consensus       170 ~~~g~~-~~a~~-~~~~i~GvQFHPE~s~-~---------------~G~~iL~nfl~~  209 (210)
T PRK14004        170 DYYQEK-FPAVV-EKENIFGTQFHPEKSH-T---------------HGLKLLENFIEF  209 (210)
T ss_pred             eECCEE-EEEEE-ecCCEEEEeCCcccCc-h---------------hHHHHHHHHHhh
Confidence            221322 33444 3458999999999885 2               478899999864

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.86  E-value=2.9e-21  Score=171.43  Aligned_cols=137  Identities=26%  Similarity=0.277  Sum_probs=87.1

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH------------hcCccccCC
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT------------SNNENELRT  181 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a------------~Gg~v~~~~  181 (350)
                      +++++|+||+||++.+......+...  .+.+.++++.+++  +||||||+|||+|+.+            ++|++. ..
T Consensus        33 ~l~~~d~iiipG~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~-~~  107 (198)
T cd01748          33 EILSADKLILPGVGAFGDAMANLRER--GLIEALKEAIASG--KPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVV-RF  107 (198)
T ss_pred             HhccCCEEEECCCCcHHHHHHHHHHc--ChHHHHHHHHHCC--CcEEEECHHHHHhccccccCCCCCCCCCcceEEE-EC
Confidence            36679999999987654322112111  3567788887777  9999999999999998            333332 11


Q ss_pred             ccC-----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCce
Q psy14047        182 RCD-----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLK  256 (350)
Q Consensus       182 ~~~-----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e  256 (350)
                      ...     .+.+..++.   ...++.+|.+++..        ..++++|++.+.        +++.+.++|++ +++. +
T Consensus       108 ~~~~~~~~~~~G~~~v~---~~~~~~lf~~l~~~--------~~v~~~Hs~~v~--------~~~~~~~la~s-~~~~-~  166 (198)
T cd01748         108 PASEGLKVPHMGWNQLE---ITKESPLFKGIPDG--------SYFYFVHSYYAP--------PDDPDYILATT-DYGG-K  166 (198)
T ss_pred             CCCCCceEEEeccceEE---ECCCChhhhCCCCC--------CeEEEEeEEEEe--------cCCcceEEEEe-cCCC-e
Confidence            100     011112222   22355677777654        368999999995        45567889986 4443 3


Q ss_pred             EEEEEEcCCccEEEEcccCCcC
Q psy14047        257 FISSVEHKVYPFAGIQFHPEKN  278 (350)
Q Consensus       257 ~v~ai~~~~~~i~gvQfHPE~~  278 (350)
                      +. ++. .+.++||+|||||++
T Consensus       167 ~~-~~~-~~~~i~GvQFHPE~~  186 (198)
T cd01748         167 FP-AAV-EKDNIFGTQFHPEKS  186 (198)
T ss_pred             EE-EEE-EcCCEEEEECCCccc
Confidence            33 333 345899999999976

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.86  E-value=7.2e-21  Score=169.05  Aligned_cols=151  Identities=22%  Similarity=0.247  Sum_probs=95.2

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh------------cCccccCCc
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS------------NNENELRTR  182 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~------------Gg~v~~~~~  182 (350)
                      ++++|+||+||++.+......+.    .+.+.++++.+++  +|+||||+|+|+|+.++            ||++.....
T Consensus        36 ~~~~d~iii~G~~~~~~~~~~~~----~~~~~i~~~~~~~--~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~  109 (200)
T PRK13143         36 ILDADGIVLPGVGAFGAAMENLS----PLRDVILEAARSG--KPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPA  109 (200)
T ss_pred             HccCCEEEECCCCCHHHHHHHHH----HHHHHHHHHHHcC--CCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCC
Confidence            56899999999765432222111    3667788888777  99999999999999863            333210000


Q ss_pred             -c-CceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEE
Q psy14047        183 -C-DCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISS  260 (350)
Q Consensus       183 -~-~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~a  260 (350)
                       . ..+....++..   ...+++|++++.         ..++++|++.+.        +++++.++|++ +++. .++++
T Consensus       110 ~~~~~~~g~~~v~~---~~~~~l~~~l~~---------~~~~~~Hs~~~~--------~~~~~~~la~~-~~~~-~~~~~  167 (200)
T PRK13143        110 GVKVPHMGWNTVKV---VKDCPLFEGIDG---------EYVYFVHSYYAY--------PDDEDYVVATT-DYGI-EFPAA  167 (200)
T ss_pred             CCCCCeecceEEEE---cCCChhhccCCC---------cEEEEEeeeeeC--------CCCcceEEEEE-cCCC-EEEEE
Confidence             0 00111122221   234556655532         247889998883        56678999986 4433 23444


Q ss_pred             EEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        261 VEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       261 i~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +. . .++||+|||||++.                ..+.+|+++|++.|++
T Consensus       168 ~~-~-~~~~gvQfHPE~~~----------------~~g~~i~~~f~~~~~~  200 (200)
T PRK13143        168 VC-N-DNVFGTQFHPEKSG----------------ETGLKILENFVELIKR  200 (200)
T ss_pred             EE-c-CCEEEEeCCCccch----------------HHHHHHHHHHHHHHhC
Confidence            44 3 38999999999762                2478899999988753

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=99.86  E-value=6.9e-21  Score=166.86  Aligned_cols=171  Identities=21%  Similarity=0.269  Sum_probs=107.1

Q ss_pred             EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccce
Q psy14047          9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGA   88 (350)
Q Consensus         9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~   88 (350)
                      |||++.+...              .+..+++++.|+.++.+....      + ++.+|||++|||+....          
T Consensus         1 igvl~~qg~~--------------~e~~~~l~~~g~~v~~v~~~~------~-l~~~dgiii~Gg~~~~~----------   49 (183)
T cd01749           1 IGVLALQGDF--------------REHIRALERLGVEVIEVRTPE------D-LEGIDGLIIPGGESTTI----------   49 (183)
T ss_pred             CEEEEecCCc--------------HHHHHHHHHCCCeEEEECCHH------H-hccCCEEEECCchHHHH----------
Confidence            7888876531              344489999999998887632      1 67899999999984321          


Q ss_pred             eeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047         89 MIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL  168 (350)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql  168 (350)
                                 ...                                .+..   .+.++++++.++|  +|+||||+|+|+
T Consensus        50 -----------~~~--------------------------------~~~~---~~~~~i~~~~~~g--~PvlGiC~G~ql   81 (183)
T cd01749          50 -----------GKL--------------------------------LRRT---GLLDPLREFIRAG--KPVFGTCAGLIL   81 (183)
T ss_pred             -----------HHH--------------------------------HHhC---CHHHHHHHHHHcC--CeEEEECHHHHH
Confidence                       000                                0110   2456677777777  999999999999


Q ss_pred             HHHHhcCc--cccCCccCceeeeeeceeecC-CCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceE
Q psy14047        169 LLYTSNNE--NELRTRCDCFYENLALEFMPS-FRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV  245 (350)
Q Consensus       169 La~a~Gg~--v~~~~~~~~~~~~~~i~~~~~-~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~v  245 (350)
                      |+.++++.  ..+++..+......+...... ......+...+       .+...++.+|.+.+.       .+|+++++
T Consensus        82 L~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l~~~~~~-------~~~~~~~~~h~~~v~-------~~p~~~~~  147 (183)
T cd01749          82 LAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADLDIPGLG-------LGPFPAVFIRAPVIE-------EVGPGVEV  147 (183)
T ss_pred             HHHHhcccCCCCccCceeEEEEeeccccccceEEEcCCCCcCC-------CCccEEEEEECcEEE-------EcCCCcEE
Confidence            99999873  222333332221111000000 00001122221       012357899999997       79999999


Q ss_pred             EEEeecCCCceEEEEEEcCCccEEEEcccCCcCC
Q psy14047        246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNA  279 (350)
Q Consensus       246 la~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~  279 (350)
                      +|++  +..   +++++..  ++||+|||||.+.
T Consensus       148 la~~--~~~---~~a~~~~--~~~g~qfHPE~~~  174 (183)
T cd01749         148 LAEY--DGK---IVAVRQG--NVLATSFHPELTD  174 (183)
T ss_pred             EEec--CCE---EEEEEEC--CEEEEEcCCccCC
Confidence            9995  333   4477654  6999999999763

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.85  E-value=4.2e-20  Score=191.80  Aligned_cols=122  Identities=20%  Similarity=0.287  Sum_probs=87.2

Q ss_pred             CccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCc
Q psy14047        156 YFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFT  235 (350)
Q Consensus       156 ~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~  235 (350)
                      ++||||||+|||+|+.++||++. ....+.++....+..    ....+|.+++. +        .++++|++.+...   
T Consensus        86 ~iPvLGIClG~QlLa~a~GG~v~-~~~~~~hG~~~~v~~----~~~~lf~gl~~-~--------~v~~~Hs~~v~~~---  148 (742)
T TIGR01823        86 EVPVLGICLGFQSLCLAQGADIS-RLPTPKHGQVYEMHT----NDAAIFCGLFS-V--------KSTRYHSLYANPE---  148 (742)
T ss_pred             CCcEEEEchhhHHHHhhcCCEEE-ECCCCCcCeEEEEEE----CCccccCCCCC-C--------ceeEEEEEEccCC---
Confidence            49999999999999999999975 333344544333432    23457777654 2        4899999988532   


Q ss_pred             ccccccc--ceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047        236 DNGLAKE--WKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH  313 (350)
Q Consensus       236 ~~~L~~~--~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~  313 (350)
                         .++.  +.+++.+ .+++  .++++++++.|+||+|||||+...+.              .+..||++|++.|.+.+
T Consensus       149 ---~~~~l~~~~~a~~-~~~~--~i~ai~h~~~pi~GVQFHPE~~~s~~--------------g~~~Lf~nFl~~~~~~~  208 (742)
T TIGR01823       149 ---GIDTLLPLCLTED-EEGI--ILMSAQTKKKPWFGVQYHPESCCSEL--------------GSGKLVSNFLKLAFINN  208 (742)
T ss_pred             ---CCCcceEEEEEEc-CCCC--eEEEEEEcCCceEEEEeCcccCCCCc--------------cHHHHHHHHHHHHHHhh
Confidence               3344  4555553 3333  59999999999999999999865432              25789999999998765


Q ss_pred             C
Q psy14047        314 H  314 (350)
Q Consensus       314 ~  314 (350)
                      .
T Consensus       209 ~  209 (742)
T TIGR01823       209 V  209 (742)
T ss_pred             h
Confidence            4

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.84  E-value=2.5e-20  Score=163.08  Aligned_cols=153  Identities=22%  Similarity=0.316  Sum_probs=98.6

Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh-cCccccCCccCceeeeee
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS-NNENELRTRCDCFYENLA  191 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~-Gg~v~~~~~~~~~~~~~~  191 (350)
                      +.++++|+||+||++++..++..+.+.  .+.+.+++  +.|  +||||||+|||+|+... .|...+++..+....+.+
T Consensus        33 ~~l~~~D~lIlPG~g~~~~~~~~L~~~--gl~~~i~~--~~g--~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~  106 (192)
T PRK13142         33 KIIDQAETIILPGVGHFKDAMSEIKRL--NLNAILAK--NTD--KKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQ  106 (192)
T ss_pred             HHhccCCEEEECCCCCHHHHHHHHHHC--CcHHHHHH--hCC--CeEEEECHHHHHHhhhcccCCcCccCceeEEEEECC
Confidence            456789999999999977666655443  26677776  345  99999999999999987 344455666665554432


Q ss_pred             cee-ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        192 LEF-MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       192 i~~-~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ... ++...++.+...  ..+.     +..+|+.|++.+.        .++  .+++++  +.+..++.+++..  +++|
T Consensus       107 ~~~~vph~GWn~~~~~--~~l~-----~~~~yFVhSy~v~--------~~~--~v~~~~--~yg~~~~~~v~~~--n~~g  165 (192)
T PRK13142        107 TEYPVPHLGWNNLVSK--HPML-----NQDVYFVHSYQAP--------MSE--NVIAYA--QYGADIPAIVQFN--NYIG  165 (192)
T ss_pred             CCCCCCcccccccCCC--Cccc-----ccEEEEECCCeEC--------CCC--CEEEEE--ECCCeEEEEEEcC--CEEE
Confidence            111 122333333211  1110     1368999999983        122  344443  2334477888754  6999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      +|||||++.                ..+..+.++|++-
T Consensus       166 ~QFHPEkS~----------------~~G~~ll~nf~~~  187 (192)
T PRK13142        166 IQFHPEKSG----------------TYGLQILRQAIQG  187 (192)
T ss_pred             EecCcccCc----------------HhHHHHHHHHHhc
Confidence            999999975                2478888888753

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.84  E-value=4.7e-20  Score=161.43  Aligned_cols=170  Identities=18%  Similarity=0.209  Sum_probs=101.9

Q ss_pred             EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccce
Q psy14047          9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGA   88 (350)
Q Consensus         9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~   88 (350)
                      |||++....              ..+..++|+++|..+..++..   +    -++.+|||+||||.....          
T Consensus         2 igvl~~qg~--------------~~e~~~~l~~~g~~~~~v~~~---~----~l~~~d~liipGG~~~~~----------   50 (184)
T TIGR03800         2 IGVLALQGA--------------VREHARALEALGVEGVEVKRP---E----QLDEIDGLIIPGGESTTL----------   50 (184)
T ss_pred             EEEEEccCC--------------HHHHHHHHHHCCCEEEEECCh---H----HhccCCEEEECCCCHHHH----------
Confidence            888887653              155669999999998888652   1    156789999999864321          


Q ss_pred             eeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047         89 MIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL  168 (350)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql  168 (350)
                                                                   ..+... ..+.+.++++.++|  +||||||+|+|+
T Consensus        51 ---------------------------------------------~~l~~~-~~l~~~i~~~~~~g--~pilGIC~G~ql   82 (184)
T TIGR03800        51 ---------------------------------------------SRLLDK-YGMFEPLRNFILSG--LPVFGTCAGLIM   82 (184)
T ss_pred             ---------------------------------------------HHHHHh-ccHHHHHHHHHHcC--CcEEEECHHHHH
Confidence                                                         011000 02456677777777  999999999999


Q ss_pred             HHHHhcCcccc-CCccCceeeeeeceeecCCCCCcc-cccCCchhHHhhcccceEEEeecceeecCCCccccccccceEE
Q psy14047        169 LLYTSNNENEL-RTRCDCFYENLALEFMPSFRQSLL-YSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVL  246 (350)
Q Consensus       169 La~a~Gg~v~~-~~~~~~~~~~~~i~~~~~~~~~~l-f~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vl  246 (350)
                      |+..+.+.... +...+......+...........+ .+.....       .......|.+.+.       .+|++++++
T Consensus        83 L~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~~~~-------~~~~~~~h~~~v~-------~lp~~~~vl  148 (184)
T TIGR03800        83 LAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDIKGVGDD-------PITGVFIRAPKIV-------SVGNGVEIL  148 (184)
T ss_pred             HHhhhccCCCCccCcEEEEEEeeccCCccccEEEEeecccCCCC-------cceEEEEcCCCcc-------cCCCCeEEE
Confidence            99998442110 111111111111000000000000 0011000       1235678999887       899999999


Q ss_pred             EEeecCCCceEEEEEEcCCccEEEEcccCCcC
Q psy14047        247 STNSNNRGLKFISSVEHKVYPFAGIQFHPEKN  278 (350)
Q Consensus       247 a~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~  278 (350)
                      |++  ++.   +.+++..  ++||+|||||++
T Consensus       149 a~~--~~~---~~a~~~~--~~~gvQfHPE~~  173 (184)
T TIGR03800       149 AKV--GNR---IVAVRQG--NILVSSFHPELT  173 (184)
T ss_pred             EEe--CCe---eEEEEeC--CEEEEEeCCccC
Confidence            995  444   5577644  699999999976

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK06186 hypothetical protein; Validated

Probab=99.84  E-value=6.6e-20  Score=163.75  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee----eeece-eecC---CCCCcccccCCchhHHh
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE----NLALE-FMPS---FRQSLLYSRAPIHVLQE  214 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~----~~~i~-~~~~---~~~~~lf~~~~~~~~~~  214 (350)
                      +++++++.   +  +|+||||+|||++...++.++.++.+......    ..|+- ..+.   ...+.+. ..+.+....
T Consensus        74 ai~~Are~---~--iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~-l~~~S~l~~  147 (229)
T PRK06186         74 AIRFAREN---G--IPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIR-LRPGSLIAR  147 (229)
T ss_pred             HHHHHHHc---C--CCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEE-ECCCCHHHH
Confidence            45556653   3  99999999999988888887644444433211    01110 0000   0001111 112223233


Q ss_pred             hc-ccceE-EEeecceeecCCCccc-cccccceEEEEeecCCCceEEEEEEcCCccE-EEEcccCCcCCccccccCCCCC
Q psy14047        215 LA-TSHIT-HNWHMWCITPSNFTDN-GLAKEWKVLSTNSNNRGLKFISSVEHKVYPF-AGIQFHPEKNAYEWKLTQDNPH  290 (350)
Q Consensus       215 ~~-~~~~v-~~~H~~~v~~~~~~~~-~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i-~gvQfHPE~~~~~~~~~~~~~h  290 (350)
                      +. .+..+ -+.|.|.|.  +...+ -.++++++.|++ +|+.   |+++|.+++|+ +|+|||||....     +.   
T Consensus       148 iyg~~~i~erhrHryeVN--s~h~q~i~~~GL~vsa~s-~DG~---iEaiE~~~hpf~lGVQwHPE~~s~-----~~---  213 (229)
T PRK06186        148 AYGTLEIEEGYHCRYGVN--PEFVAALESGDLRVTGWD-EDGD---VRAVELPGHPFFVATLFQPERAAL-----AG---  213 (229)
T ss_pred             HhCCCeeeeeccccEEEC--HHHHHHHhcCCeEEEEEc-CCCC---EEEEEeCCCCcEEEEeCCCCccCC-----CC---
Confidence            32 22221 223333332  21111 127899999997 5554   89999998885 699999996532     21   


Q ss_pred             chHHHHhHHHHHHHHHHHHHc
Q psy14047        291 TRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       291 ~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                            ..+.+|..|+++|+.
T Consensus       214 ------~~~~LF~~Fv~aa~~  228 (229)
T PRK06186        214 ------RPPPLVRAFLRAARA  228 (229)
T ss_pred             ------CCCHHHHHHHHHHhc
Confidence                  135799999999864

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.83  E-value=9.7e-20  Score=161.31  Aligned_cols=153  Identities=21%  Similarity=0.191  Sum_probs=91.2

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh--cCccccCCccCceeeeee
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS--NNENELRTRCDCFYENLA  191 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~--Gg~v~~~~~~~~~~~~~~  191 (350)
                      .++.+|+||+||++++....+.+...  .+..+++++.+.+  +||||||+|+|+|+.++  |+++.+++..+......+
T Consensus        33 ~l~~~d~lii~G~~~~~~~~~~l~~~--~~~~l~~~~~~~~--~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~  108 (196)
T TIGR01855        33 EAELADKLILPGVGAFGAAMARLREN--GLDLFVELVVRLG--KPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLE  108 (196)
T ss_pred             HhccCCEEEECCCCCHHHHHHHHHHc--CcHHHHHHHHhCC--CCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECC
Confidence            46789999999987654333333221  1122335566666  99999999999999984  222222222222211110


Q ss_pred             --------ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEc
Q psy14047        192 --------LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEH  263 (350)
Q Consensus       192 --------i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~  263 (350)
                              ...+.....+++|+.++..        ..++++|++.+.        ++++. +++.+ +++ ..+.+.++ 
T Consensus       109 ~~~~~~~g~~~~~~~~~~~l~~~l~~~--------~~v~~~Hs~~v~--------~~~~~-~~a~~-~~g-~~~~~~~~-  168 (196)
T TIGR01855       109 ARKVPHMGWNEVHPVKESPLLNGIDEG--------AYFYFVHSYYAV--------CEEEA-VLAYA-DYG-EKFPAAVQ-  168 (196)
T ss_pred             CCCCCcccCeeeeeCCCChHHhCCCCC--------CEEEEECeeEec--------CCCCc-EEEEE-cCC-cEEEEEEe-
Confidence                    0111223455677776654        369999999995        23343 55654 433 33444444 


Q ss_pred             CCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        264 KVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       264 ~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                       +.++||+|||||++.                +.+..++++|++
T Consensus       169 -~~~i~GvQFHPE~~~----------------~~g~~ll~~f~~  195 (196)
T TIGR01855       169 -KGNIFGTQFHPEKSG----------------KTGLKLLENFLE  195 (196)
T ss_pred             -cCCEEEEECCCccCc----------------HhHHHHHHHHHh
Confidence             347999999999763                237788888875

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>TIGR00337 PyrG CTP synthase

Probab=99.83  E-value=1.9e-19  Score=177.34  Aligned_cols=212  Identities=23%  Similarity=0.269  Sum_probs=120.0

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCC----eEEEEecCCCHHH--HHHhhcccceEEcCCCCcccc
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGA----RVAPIFIGNPEAY--YRKILGQVNGVLIPGGGASFY   78 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~----~~v~i~~~~~~~~--~~~~l~~~dGli~~GG~~dv~   78 (350)
                      .++.|||.+-...        -.+.|  .+++++|+.+|+    .+.+.+.+.+...  -.+.|+.+|||++|||+.+..
T Consensus       288 ~~v~IalVGKY~~--------~~daY--~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~  357 (525)
T TIGR00337       288 HEVTIGIVGKYVE--------LKDSY--LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG  357 (525)
T ss_pred             CCcEEEEEeCCcC--------CHHHH--HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh
Confidence            3578999886532        11456  588999999986    3444444332211  112467788888888874311


Q ss_pred             cCCcccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCcc
Q psy14047         79 ADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFP  158 (350)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~P  158 (350)
                                                                            ...       .++.++.+.+++  +|
T Consensus       358 ------------------------------------------------------~~g-------~i~ai~~a~e~~--iP  374 (525)
T TIGR00337       358 ------------------------------------------------------VEG-------KILAIKYARENN--IP  374 (525)
T ss_pred             ------------------------------------------------------hcC-------hHHHHHHHHHcC--CC
Confidence                                                                  000       112233333344  99


Q ss_pred             EEEehHHHHHHHHHhcCccccCCccCce----eeeeece-eecCC-------CCCcc----cccCCchhHHhhc-ccc-e
Q psy14047        159 IMGICLGFQLLLYTSNNENELRTRCDCF----YENLALE-FMPSF-------RQSLL----YSRAPIHVLQELA-TSH-I  220 (350)
Q Consensus       159 IlGIC~G~QlLa~a~Gg~v~~~~~~~~~----~~~~~i~-~~~~~-------~~~~l----f~~~~~~~~~~~~-~~~-~  220 (350)
                      +||||+|||+|+.++|+++..+......    +...|+. +....       ...+|    ..-.+.+....+. ... .
T Consensus       375 ~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~  454 (525)
T TIGR00337       375 FLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVY  454 (525)
T ss_pred             EEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCcee
Confidence            9999999999999999987544332221    1122321 11100       00011    0011223333332 222 3


Q ss_pred             EEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCCCCCchHHHHhH
Q psy14047        221 THNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTRIAIENA  298 (350)
Q Consensus       221 v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~~~~~~~  298 (350)
                      .-+.|++.|.....  +.+ .++++++|++ .|++  .|+++|++++|++ |+|||||..+...              ..
T Consensus       455 erhrHry~VNs~h~--q~l~~~GL~vsa~s-~Dgg--~VEaIE~~~hpfflGVQwHPE~~s~p~--------------~~  515 (525)
T TIGR00337       455 ERHRHRYEVNNEYR--EQLENKGLIVSGTS-PDGR--LVEIIELPDHPFFVACQFHPEFTSRPN--------------RP  515 (525)
T ss_pred             ecccceEEECHHHH--HhhhhCCeEEEEEE-CCCC--EEEEEEECCCCeEEEEecCCCCCCCCC--------------ch
Confidence            34555566642221  112 3789999998 6654  5999999999976 9999999664321              25


Q ss_pred             HHHHHHHHHH
Q psy14047        299 RYFFDWLVSQ  308 (350)
Q Consensus       299 ~~i~~~Fv~~  308 (350)
                      +.+|..|+++
T Consensus       516 ~~LF~~FV~A  525 (525)
T TIGR00337       516 HPLFLGFVKA  525 (525)
T ss_pred             hHHHHHHHhC
Confidence            6899999863

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.83  E-value=1.7e-19  Score=177.63  Aligned_cols=148  Identities=21%  Similarity=0.223  Sum_probs=84.0

Q ss_pred             HHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee----eeec-eeecCC-------CCCcc----cccCCc
Q psy14047        146 IAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE----NLAL-EFMPSF-------RQSLL----YSRAPI  209 (350)
Q Consensus       146 ~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~----~~~i-~~~~~~-------~~~~l----f~~~~~  209 (350)
                      .++.+.+++  +|+||||+|||+|+.++||++.++.+......    ..|+ ......       ....+    ..-.+.
T Consensus       364 ~i~~a~e~~--iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g  441 (533)
T PRK05380        364 AIRYARENN--IPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG  441 (533)
T ss_pred             HHHHHHHCC--CcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC
Confidence            344444455  99999999999999999999744444321110    0111 111000       00000    001123


Q ss_pred             hhHHhhcccceEEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCC
Q psy14047        210 HVLQELATSHITHNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQD  287 (350)
Q Consensus       210 ~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~  287 (350)
                      +....+.....+...|+....+++...+.+ ..+++++|++ .|++  .++++|.+++|++ |+|||||......     
T Consensus       442 S~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s-~Dgg--lVEaIEl~~hpfflGVQwHPE~~s~p~-----  513 (533)
T PRK05380        442 TLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTS-PDGR--LVEIVELPDHPWFVGVQFHPEFKSRPR-----  513 (533)
T ss_pred             ChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEc-CCCC--cEEEEEeCCCCEEEEEeCCCCCCCCCC-----
Confidence            333333323333333333333333222222 2489999997 5554  5999999999975 9999999653211     


Q ss_pred             CCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        288 NPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       288 ~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                               ..+.+|..|+++|++.
T Consensus       514 ---------~~~pLF~~FV~Aa~~~  529 (533)
T PRK05380        514 ---------RPHPLFAGFVKAALEN  529 (533)
T ss_pred             ---------chHHHHHHHHHHHHHH
Confidence                     2578999999999764

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.80  E-value=8.2e-19  Score=175.54  Aligned_cols=158  Identities=26%  Similarity=0.263  Sum_probs=103.1

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc--CccccCCccCcee----
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN--NENELRTRCDCFY----  187 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G--g~v~~~~~~~~~~----  187 (350)
                      .++.+|+||+||++++...+..+...  .+.+.++++.++|  +|+||||+|||+|+.++.  |...+++..+...    
T Consensus        41 ~l~~~D~lIlpG~gs~~~~m~~L~~~--gl~~~i~~~i~~g--~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~  116 (538)
T PLN02617         41 DILNADRLIFPGVGAFGSAMDVLNNR--GMAEALREYIQND--RPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFD  116 (538)
T ss_pred             hhccCCEEEECCCCCHHHHHHHHHHc--CHHHHHHHHHHcC--CCEEEECHHHHHHhhhhhhcCCccCcccccceEEECC
Confidence            46789999999999875544433332  2567788887777  999999999999998752  2222333222211    


Q ss_pred             ----------eeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccc-eEEEEeecCCCce
Q psy14047        188 ----------ENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW-KVLSTNSNNRGLK  256 (350)
Q Consensus       188 ----------~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~-~vla~s~~~~~~e  256 (350)
                                ++.++   .....+++|..++.         ..++++|++.+.       .++.+. .+++++  +.+.+
T Consensus       117 ~~~~~~vp~iGw~~V---~~~~~spL~~~l~~---------~~vy~vHSy~v~-------~~p~~~~~v~a~~--~~g~~  175 (538)
T PLN02617        117 SSNGLRVPHIGWNAL---QITKDSELLDGVGG---------RHVYFVHSYRAT-------PSDENKDWVLATC--NYGGE  175 (538)
T ss_pred             ccCCCCCCeecceEE---EecCCChhHhcCCC---------cEEEEEeEEEEE-------ecCCCCcEEEEEE--ccCCC
Confidence                      11222   22234566655532         358999999875       455443 344553  33334


Q ss_pred             EEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCC
Q psy14047        257 FISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHH  314 (350)
Q Consensus       257 ~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~  314 (350)
                      +++++++.  ++||+|||||++.                ..+..++++|++.+....+
T Consensus       176 ~IaAI~~g--nI~GVQFHPE~s~----------------~~G~~L~~nFl~~~~~~~~  215 (538)
T PLN02617        176 FIASVRKG--NVHAVQFHPEKSG----------------ATGLSILRRFLEPKSSATQ  215 (538)
T ss_pred             cEEEEEeC--CEEEEEcCCccCc----------------hhHHHHHHHHHHhhhhhhc
Confidence            78999875  7999999999874                1367899999988764444

>KOG0026|consensus

Probab=99.80  E-value=3.4e-19  Score=147.37  Aligned_cols=149  Identities=21%  Similarity=0.385  Sum_probs=111.4

Q ss_pred             cCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCcc-Cceeeeeecee
Q psy14047        117 QVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRC-DCFYENLALEF  194 (350)
Q Consensus       117 ~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~-~~~~~~~~i~~  194 (350)
                      +.+++++ ||+|.+.  +....      .+.++++.   .++|+||||.|.|.|..++||++. ...+ -.++...+++.
T Consensus        63 NP~~LliSPGPG~P~--DsGIs------~~~i~~f~---~~iP~fGvCMGlQCi~e~fGGkv~-~a~~~i~HGK~S~i~~  130 (223)
T KOG0026|consen   63 NPRGLLISPGPGTPQ--DSGIS------LQTVLELG---PLVPLFGVCMGLQCIGEAFGGKIV-RSPFGVMHGKSSMVHY  130 (223)
T ss_pred             CCCeEEecCCCCCCc--cccch------HHHHHHhC---CCCceeeeehhhhhhhhhhCcEEe-ccCcceeecccccccc
Confidence            4567777 9999986  23332      24455553   469999999999999999999975 4543 34566666654


Q ss_pred             ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccc-ccceEEEEeecCCCceEEEEEEcCCcc-EEEEc
Q psy14047        195 MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFISSVEHKVYP-FAGIQ  272 (350)
Q Consensus       195 ~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v~ai~~~~~~-i~gvQ  272 (350)
                       +......+|+++|+.+        .|..||+.+...+     .|| +.++|+|+  ++++  .|++.+|+++. |-|+|
T Consensus       131 -D~~~~~G~f~g~~q~~--------~V~RYHSLa~~~s-----SlP~d~L~VTaw--TEnG--~iMgaRHkKY~~ieGVQ  192 (223)
T KOG0026|consen  131 -DEKGEEGLFSGLSNPF--------IVGRYHSLVIEKD-----SFPSDELEVTAW--TEDG--LVMAARHRKYKHIQGVQ  192 (223)
T ss_pred             -CCccccccccCCCCCe--------EEEeeeeeeeecc-----cCCccceeeeEe--ccCc--EEEeeecccccccccee
Confidence             2223466899998876        5999999999866     467 67999999  4555  59999999998 78999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      ||||+..++               .++.+.++|++...
T Consensus       193 fHPESIlte---------------eGk~~irNflni~~  215 (223)
T KOG0026|consen  193 FHPESIITT---------------EGKTIVRNFIKIVE  215 (223)
T ss_pred             ecchhhhhh---------------hhHHHHHHHHHhcc
Confidence            999987653               46778888887654

>PLN02327 CTP synthase

Probab=99.79  E-value=6.6e-19  Score=173.78  Aligned_cols=174  Identities=24%  Similarity=0.299  Sum_probs=105.0

Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee--
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE--  188 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~--  188 (350)
                      +++.|.++|||++||+....    ....    .+..++.+.+++  +|+||||+|||+++.++++++.++....+...  
T Consensus       356 ~~~~L~~~DGIvvpGGfG~~----~~~G----~i~ai~~are~~--iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp  425 (557)
T PLN02327        356 AWKLLKGADGILVPGGFGDR----GVEG----KILAAKYARENK--VPYLGICLGMQIAVIEFARSVLGLKDANSTEFDP  425 (557)
T ss_pred             hHHhhccCCEEEeCCCCCCc----cccc----HHHHHHHHHHcC--CCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCC
Confidence            45679999999999975321    1111    122333333444  99999999999999999998765554443211  


Q ss_pred             --eeec-eeecCCC----CCcc-ccc----C--CchhHHhhc-ccceEEEeec--ceeecCCCccccc-cccceEEEEee
Q psy14047        189 --NLAL-EFMPSFR----QSLL-YSR----A--PIHVLQELA-TSHITHNWHM--WCITPSNFTDNGL-AKEWKVLSTNS  250 (350)
Q Consensus       189 --~~~i-~~~~~~~----~~~l-f~~----~--~~~~~~~~~-~~~~v~~~H~--~~v~~~~~~~~~L-~~~~~vla~s~  250 (350)
                        ..|+ .+.+...    +..| ++.    +  +.+....+. +...++..|+  |.+.+...  +.| ..+++++|++ 
T Consensus       426 ~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v--~~le~~gL~vsa~s-  502 (557)
T PLN02327        426 ETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMV--PRLEKAGLSFVGKD-  502 (557)
T ss_pred             CCCCCEEEEehhcccccCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHH--HHHhhcCcEEEEEc-
Confidence              1121 1111100    1111 111    1  233333333 3334555554  55543321  145 5899999997 


Q ss_pred             cCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047        251 NNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH  313 (350)
Q Consensus       251 ~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~  313 (350)
                      .++.  .++++|++++|++ |+|||||......              ..+.+|..|+++|.++.
T Consensus       503 ~dg~--~IEaiE~~~~pffvGVQfHPE~~s~p~--------------~~~pLF~~Fv~Aa~~~~  550 (557)
T PLN02327        503 ETGR--RMEIVELPSHPFFVGVQFHPEFKSRPG--------------KPSPLFLGLIAAASGQL  550 (557)
T ss_pred             CCCC--EEEEEEeCCCCEEEEEEcCCCCCCCCC--------------CchHHHHHHHHHHHHhH
Confidence            5554  5999999999987 9999999764221              24689999999997653

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=99.78  E-value=5.2e-18  Score=153.63  Aligned_cols=195  Identities=21%  Similarity=0.295  Sum_probs=112.5

Q ss_pred             EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047          8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG   87 (350)
Q Consensus         8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~   87 (350)
                      .|||++.....              .+.+++|+++|+.++.+...   +    -+..+|||+||||....          
T Consensus         3 ~igVLa~qG~~--------------~e~~~aL~~lG~ev~~v~~~---~----~L~~~DgLILPGGfs~~----------   51 (248)
T PLN02832          3 AIGVLALQGSF--------------NEHIAALRRLGVEAVEVRKP---E----QLEGVSGLIIPGGESTT----------   51 (248)
T ss_pred             EEEEEeCCCch--------------HHHHHHHHHCCCcEEEeCCH---H----HhccCCEEEeCCCHHHH----------
Confidence            59999987642              66679999999998887652   1    25678899999975321          


Q ss_pred             eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047         88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ  167 (350)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q  167 (350)
                                                                   +..+... ..+.+.++++.++|  +||||||+|||
T Consensus        52 ---------------------------------------------~~~L~~~-~gl~~~I~~~v~~g--~PvLGiC~Gmq   83 (248)
T PLN02832         52 ---------------------------------------------MAKLAER-HNLFPALREFVKSG--KPVWGTCAGLI   83 (248)
T ss_pred             ---------------------------------------------HHHHHhh-cchHHHHHHHHHcC--CCEEEEChhHH
Confidence                                                         1122111 02667777777777  99999999999


Q ss_pred             HHHHHhcC----ccccCCccCce---------eeee--eceeecCCCCCcc-cccCCchhHH---hhcccceEEEeecce
Q psy14047        168 LLLYTSNN----ENELRTRCDCF---------YENL--ALEFMPSFRQSLL-YSRAPIHVLQ---ELATSHITHNWHMWC  228 (350)
Q Consensus       168 lLa~a~Gg----~v~~~~~~~~~---------~~~~--~i~~~~~~~~~~l-f~~~~~~~~~---~~~~~~~v~~~H~~~  228 (350)
                      +|+...-+    ....++..+..         ....  ++. ++...++.+ +..++..++.   .......++..|++.
T Consensus        84 lLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~-ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy~  162 (248)
T PLN02832         84 FLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELP-VPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEYP  162 (248)
T ss_pred             HHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCc-CCccccccccccccceEEecCCceEeCCCcEEEEEEec
Confidence            99988622    21112222211         1111  011 111122221 0111111110   012245688888887


Q ss_pred             eecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        229 ITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       229 v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      ...+.        ...+.|++ +.+...++.+++..  +++|+|||||++.                  ..++.++|++.
T Consensus       163 ~~~~~--------~~~~~a~~-~y~~~~~~~aV~qg--nvlatqFHPEls~------------------d~rih~~Fl~~  213 (248)
T PLN02832        163 LPSEK--------ALYSSSTD-AEGRDKVIVAVKQG--NLLATAFHPELTA------------------DTRWHSYFVKM  213 (248)
T ss_pred             ccccc--------cccccccc-cccCCceEEEEEeC--CEEEEEccCccCC------------------ccHHHHHHHHH
Confidence            64321        12334553 22222567888755  6999999999884                  12788899998


Q ss_pred             HHc
Q psy14047        309 ASG  311 (350)
Q Consensus       309 ~~~  311 (350)
                      ++.
T Consensus       214 ~~~  216 (248)
T PLN02832        214 VSE  216 (248)
T ss_pred             HHH
Confidence            864

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.76  E-value=1.7e-17  Score=150.20  Aligned_cols=209  Identities=17%  Similarity=0.168  Sum_probs=124.1

Q ss_pred             EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047          8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG   87 (350)
Q Consensus         8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~   87 (350)
                      .|+|+..+..            ....+++++|+++|+.+..++.....      ++.+|||+||||...-+      ...
T Consensus         2 ~v~Vl~~~G~------------n~~~~~~~al~~~G~~~~~i~~~~~~------l~~~d~lilpGG~~~~d------~~~   57 (227)
T TIGR01737         2 KVAVIRFPGT------------NCDRDTVYALRLLGVDAEIVWYEDGS------LPDYDGVVLPGGFSYGD------YLR   57 (227)
T ss_pred             eEEEEeCCCc------------CcHHHHHHHHHHCCCeEEEEecCCCC------CCCCCEEEECCCCcccc------ccc
Confidence            4788876642            12356779999999999999875431      57899999999862111      000


Q ss_pred             eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047         88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ  167 (350)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q  167 (350)
                                                          .|  .    .....    .+.++++++.++|  +||+|||.|+|
T Consensus        58 ------------------------------------~~--~----~~~~~----~~~~~l~~~~~~g--~pvlgIC~G~Q   89 (227)
T TIGR01737        58 ------------------------------------AG--A----IAAAS----PIMQEVREFAEKG--VPVLGICNGFQ   89 (227)
T ss_pred             ------------------------------------cc--c----hhcch----HHHHHHHHHHHcC--CEEEEECHHHH
Confidence                                                00  0    00001    2456677777777  99999999999


Q ss_pred             HHHHH--hcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecce---eecCCCcccccccc
Q psy14047        168 LLLYT--SNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC---ITPSNFTDNGLAKE  242 (350)
Q Consensus       168 lLa~a--~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~---v~~~~~~~~~L~~~  242 (350)
                      +|+.+  ++|.+. ........ ...+++......+.+++.++....      ......|.++   ++++.+  +.|.+.
T Consensus        90 lLa~~GlL~G~l~-~n~~~~~~-~~~~~~~v~~~~~~~~~~~~~g~~------~~~pi~H~eG~y~~~~~~l--~~l~~~  159 (227)
T TIGR01737        90 ILVEAGLLPGALL-PNDSLRFI-CRWVYLRVENADTIFTKNYKKGEV------IRIPIAHGEGRYYADDETL--ARLESN  159 (227)
T ss_pred             HHHHcCCCCCcee-ecCCCceE-EEeEEEEECCCCChhhccCCCCCE------EEEEeEcCCcCeEcCHHHH--HHHHHC
Confidence            99996  777653 33222211 112222212234556666653210      1111134333   222111  156666


Q ss_pred             ceEEEEeec-----------CCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        243 WKVLSTNSN-----------NRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       243 ~~vla~s~~-----------~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      .+|+.+-.+           ++....|+++++++++++|+|||||+....|..+          ..++.||++|++.
T Consensus       160 ~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~----------~~g~~~~~~~~~~  226 (227)
T TIGR01737       160 DQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGG----------DDGLKLFESLVEW  226 (227)
T ss_pred             CcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCC----------cccHHHHHHHHhh
Confidence            665555312           2234569999999999999999999997655421          2588999999853

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>KOG1224|consensus

Probab=99.72  E-value=3.4e-17  Score=157.16  Aligned_cols=164  Identities=21%  Similarity=0.368  Sum_probs=112.1

Q ss_pred             ccCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeecee
Q psy14047        116 GQVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEF  194 (350)
Q Consensus       116 ~~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~  194 (350)
                      ..+|+||+ ||+|++-.+ .....    +.++..+++    .+||||||+|||.|+.+-|..|. ....+.++....++.
T Consensus        63 ~~FDaIVVgPGPG~P~~a-~d~gI----~~rl~~~~~----~iPilGICLGfQal~l~hGA~v~-~~n~p~HGrvs~i~~  132 (767)
T KOG1224|consen   63 VAFDAIVVGPGPGSPMCA-ADIGI----CLRLLLECR----DIPILGICLGFQALGLVHGAHVV-HANEPVHGRVSGIEH  132 (767)
T ss_pred             cccceEEecCCCCCCCcH-HHHHH----HHHHHHhcC----CCceeeeehhhHhHhhhccccee-cCCCcccceeeeEEe
Confidence            34999999 999998321 11111    223333322    39999999999999999999986 556677776666554


Q ss_pred             ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccccc-ceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047        195 MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE-WKVLSTNSNNRGLKFISSVEHKVYPFAGIQF  273 (350)
Q Consensus       195 ~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~-~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf  273 (350)
                      -    +..+|.+++..-.    ....+..||+..+.       .+|.+ +.+++++.++++ -.++++.+++.|.||+||
T Consensus       133 ~----~~~~f~gi~sg~~----~~fK~~RYHSL~in-------~~pid~l~il~t~~ddng-~ilMsi~~~~fPhfG~qy  196 (767)
T KOG1224|consen  133 D----GNILFSGIPSGRN----SDFKVVRYHSLIIN-------SLPIDLLPILWTIYDDNG-HILMSIMHSSFPHFGLQY  196 (767)
T ss_pred             c----CcEEEccCCCCCc----ccceeEEeEEEEec-------CCchhhhcceeEeecCCc-eEEEEeeccCCCccceee
Confidence            2    3344555543211    12358999999997       66654 667777633333 468999999999999999


Q ss_pred             cCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q psy14047        274 HPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEE  320 (350)
Q Consensus       274 HPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~  320 (350)
                      |||+...+.               +-.+|++|++.+-.++-+-.+-+
T Consensus       197 HPES~~s~~---------------g~~lfkNFl~lt~~~n~~c~~~~  228 (767)
T KOG1224|consen  197 HPESIASTY---------------GSQLFKNFLDLTVNYNSRCKSTS  228 (767)
T ss_pred             ChHHhhhhh---------------hHHHHHHHHHhhccCcccccchh
Confidence            999876543               56799999998866655555433

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.70  E-value=9e-17  Score=154.23  Aligned_cols=169  Identities=25%  Similarity=0.303  Sum_probs=105.8

Q ss_pred             CCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee----eeec-
Q psy14047        118 VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE----NLAL-  192 (350)
Q Consensus       118 ~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~----~~~i-  192 (350)
                      +|||++|||..    ...++-.. ...+++++.     ++|+||||+|||+....+..++.++....+...    ..|+ 
T Consensus       344 ~dgIlVPGGFG----~RG~eGkI-~Ai~yAREn-----~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv  413 (533)
T COG0504         344 VDGILVPGGFG----YRGVEGKI-AAIRYAREN-----NIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVV  413 (533)
T ss_pred             CCEEEeCCCCC----cCchHHHH-HHHHHHHhc-----CCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceE
Confidence            99999999877    33443111 245566653     399999999999999999887755544433221    1222 


Q ss_pred             eeecCC-------CCCccccc-----CCchhHHhhcccceEEEeecceeecCCCccccc-cccceEEEEeecCCCceEEE
Q psy14047        193 EFMPSF-------RQSLLYSR-----APIHVLQELATSHITHNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFIS  259 (350)
Q Consensus       193 ~~~~~~-------~~~~lf~~-----~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~  259 (350)
                      .+.+..       ...+| +.     .+.+++.++.....++..|+.....+.-..+.+ ..++++.++| .++.  .++
T Consensus       414 ~l~~eq~~~~~lGGTmRL-G~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s-~d~~--lvE  489 (533)
T COG0504         414 DLMPEQKDVVDLGGTMRL-GAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTS-PDGG--LVE  489 (533)
T ss_pred             EeccccccCCcCCceeec-cceeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEc-CCCC--eEE
Confidence            111110       11111 11     234456666655666665554443332111123 3589999997 5555  699


Q ss_pred             EEEcCCccEE-EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCC
Q psy14047        260 SVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHH  314 (350)
Q Consensus       260 ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~  314 (350)
                      ++|..++|+| |+|||||     +.+++..||         .+|..|+++|...+.
T Consensus       490 ivE~~~hpfFv~~QfHPE-----f~SrP~~ph---------Plf~~fv~Aa~~~~~  531 (533)
T COG0504         490 IVELPDHPFFVATQFHPE-----FKSRPLRPH---------PLFVGFVKAALEYKK  531 (533)
T ss_pred             EEEcCCCceEEEEccccc-----ccCCCCCCC---------ccHHHHHHHHHHhhc
Confidence            9999999975 9999999     455666666         689999999976543

>KOG1622|consensus

Probab=99.70  E-value=2.4e-17  Score=155.69  Aligned_cols=186  Identities=20%  Similarity=0.258  Sum_probs=126.4

Q ss_pred             HHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHHHh
Q psy14047         36 VKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKIL  115 (350)
Q Consensus        36 v~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (350)
                      -+.+++.....-++|.+.+...+..  ....|||++||+.+|+..+.   |          .                  
T Consensus        33 ~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~SVya~dA---P----------~------------------   79 (552)
T KOG1622|consen   33 DRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNSVYAEDA---P----------S------------------   79 (552)
T ss_pred             HHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCccccCcC---C----------C------------------
Confidence            4778888888888999887766654  57899999999987763210   0          0                  


Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceee
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFM  195 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~  195 (350)
                                       .+          ..+.+.   |  +||||||+|||+|+..+||.|. .......+ ...+.  
T Consensus        80 -----------------~d----------p~if~~---~--vpvLGICYGmQ~i~~~~Gg~V~-~~~~RE~G-~~eI~--  123 (552)
T KOG1622|consen   80 -----------------FD----------PAIFEL---G--VPVLGICYGMQLINKLNGGTVV-KGMVREDG-EDEIE--  123 (552)
T ss_pred             -----------------CC----------hhHhcc---C--CcceeehhHHHHHHHHhCCccc-cccccCCC-CceEE--
Confidence                             11          112222   2  9999999999999999999974 33222111 11221  


Q ss_pred             cCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccC
Q psy14047        196 PSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHP  275 (350)
Q Consensus       196 ~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHP  275 (350)
                       ......||+++....      ...|+..|++.+.       .++.+|++.|+| ...   .++++.+...++||+||||
T Consensus       124 -v~~~~~lF~~~~~~~------~~~VlltHgdsl~-------~v~~g~kv~a~s-~n~---~va~i~~e~kkiyglqfhp  185 (552)
T KOG1622|consen  124 -VDDSVDLFSGLHKTE------FMTVLLTHGDSLS-------KVPEGFKVVAFS-GNK---PVAGILNELKKIYGLQFHP  185 (552)
T ss_pred             -cCchhhhhhhhcccc------eeeeeeccccchh-------hccccceeEEee-cCc---ceeeehhhhhhhhcCCCCC
Confidence             122344777764432      1248999999998       899999999996 333   3778888888999999999


Q ss_pred             CcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcC-CCCCCCHHHHH
Q psy14047        276 EKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGS-HHSFETEEEEK  323 (350)
Q Consensus       276 E~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~-~~~~~~~~~~~  323 (350)
                      |...+.               .+..++.+|+ +.|... +.+.++.+++.
T Consensus       186 EV~~t~---------------~g~~ll~nFl~~vc~~~~n~tmenre~e~  220 (552)
T KOG1622|consen  186 EVTLTP---------------NGKELLKNFLFDVCGCSGNFTMENREEEC  220 (552)
T ss_pred             cccccC---------------chhHHHHHHHHHHcCCccCcchhhhhHHH
Confidence            987542               2667777887 888665 34555555433

>KOG0370|consensus

Probab=99.68  E-value=3.8e-16  Score=158.04  Aligned_cols=179  Identities=23%  Similarity=0.411  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      +..--+++|.+.|+.+..+|++.+...     ...|||+|++|+.|-  .                 .            
T Consensus       182 ~K~N~IRcL~~RGa~vtVvPw~~~i~~-----~~yDGlflSNGPGdP--e-----------------~------------  225 (1435)
T KOG0370|consen  182 LKYNQIRCLVKRGAEVTVVPWDYPIAK-----EEYDGLFLSNGPGDP--E-----------------L------------  225 (1435)
T ss_pred             chHHHHHHHHHhCceEEEecCCccccc-----cccceEEEeCCCCCc--h-----------------h------------
Confidence            345568899999999999999765432     268899999888541  1                 0            


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                            .+       .+.+-+++..+++  +||+|||+|||+|+.+.|++.. ....+.++++.
T Consensus       226 ----------------------~~-------~~v~~vr~lL~~~--~PvfGIClGHQllA~AaGakT~-KmKyGNRGhNi  273 (1435)
T KOG0370|consen  226 ----------------------CP-------LLVQNVRELLESN--VPVFGICLGHQLLALAAGAKTY-KMKYGNRGHNI  273 (1435)
T ss_pred             ----------------------hH-------HHHHHHHHHHhCC--CCeEEEehhhHHHHHhhCCceE-EeeccccCCCc
Confidence                                  11       1334445555454  9999999999999999999864 45566677777


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      |.....   ....               ..+-+.|.++++++     .||.+++.+-++..|+.   -+++.|...|++.
T Consensus       274 P~~~~~---tGrc---------------~ITSQNHGYAVD~~-----tLp~gWk~lFvN~NDgS---NEGI~Hss~P~fS  327 (1435)
T KOG0370|consen  274 PCTCRA---TGRC---------------FITSQNHGYAVDPA-----TLPAGWKPLFVNANDGS---NEGIMHSSKPFFS  327 (1435)
T ss_pred             cceecc---CceE---------------EEEecCCceeeccc-----cccCCCchheeecccCC---CceEecCCCCcee
Confidence            754211   1111               14677899999876     57899999999866666   5689999999999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCC
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFE  317 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~  317 (350)
                      +|||||-++..        |      +..++|..|++..++....-.
T Consensus       328 vQFHPEat~GP--------~------DTeyLFDiFi~lvkk~kst~t  360 (1435)
T KOG0370|consen  328 VQFHPEATPGP--------H------DTEYLFDVFIELVKKSKSTPT  360 (1435)
T ss_pred             eecCCcCCCCC--------c------chHHHHHHHHHHHHHHhcCCc
Confidence            99999977643        2      367999999999988765544

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=1.1e-15  Score=129.57  Aligned_cols=187  Identities=20%  Similarity=0.248  Sum_probs=110.8

Q ss_pred             CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcC-CeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047          7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASG-ARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK   85 (350)
Q Consensus         7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G-~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~   85 (350)
                      ..|||++....              -...+++++++| +.++.+...+       -|+.+||||||||-+..        
T Consensus         1 m~IGVLalQG~--------------v~EH~~~l~~~~~~e~~~Vk~~~-------dL~~~d~LIiPGGESTT--------   51 (194)
T COG0311           1 MKIGVLALQGA--------------VEEHLEALEKAGGAEVVEVKRPE-------DLEGVDGLIIPGGESTT--------   51 (194)
T ss_pred             CeEEEEEeccc--------------HHHHHHHHHhhcCCceEEEcCHH-------HhccCcEEEecCccHHH--------
Confidence            36999998753              177889999995 8888876532       26788999999987421        


Q ss_pred             cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHH-HHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047         86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGY-AKAGAMIYKIAKEFNENRDYFPIMGICL  164 (350)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~-~~~~~~l~~~i~~~~~~g~~~PIlGIC~  164 (350)
                                                                     +..+ .+.  .+++.++++.++|  +|+||+|.
T Consensus        52 -----------------------------------------------i~rL~~~~--gl~e~l~~~~~~G--~Pv~GTCA   80 (194)
T COG0311          52 -----------------------------------------------IGRLLKRY--GLLEPLREFIADG--LPVFGTCA   80 (194)
T ss_pred             -----------------------------------------------HHHHHHHc--CcHHHHHHHHHcC--CceEEech
Confidence                                                           1122 122  3778889988888  99999999


Q ss_pred             HHHHHHHHhcC-c-cccCCccCceeeeeeceeecCCCCCcc-cccCCchhHHhhcccceEEEeecceeecCCCccccccc
Q psy14047        165 GFQLLLYTSNN-E-NELRTRCDCFYENLALEFMPSFRQSLL-YSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK  241 (350)
Q Consensus       165 G~QlLa~a~Gg-~-v~~~~~~~~~~~~~~i~~~~~~~~~~l-f~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~  241 (350)
                      |+.+|+...-+ . +..+...+....+........+-+..+ ++.+...+      ...+.+.....+.       ++.+
T Consensus        81 GlIlLakei~~~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~------~~~avFIRAP~I~-------~vg~  147 (194)
T COG0311          81 GLILLAKEILDGPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPF------PFPAVFIRAPVIE-------EVGD  147 (194)
T ss_pred             hhhhhhhhhcCCCCCcccceEEEEEEccccccccccceeeEEeecccCCC------cceEEEEEcceee-------hhcC
Confidence            99999976542 2 222332222221111100000000000 11111100      0123444555555       6777


Q ss_pred             cceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        242 EWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       242 ~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +.++||+  -++.   +-+++  +.+++|+-||||.+.                  +.++.++|++.++.
T Consensus       148 ~V~vLa~--l~~~---iVav~--qgn~LatsFHPELT~------------------D~r~Heyf~~~v~~  192 (194)
T COG0311         148 GVEVLAT--LDGR---IVAVK--QGNILATSFHPELTD------------------DTRLHEYFLDMVLG  192 (194)
T ss_pred             cceEeee--eCCE---EEEEE--eCCEEEEecCccccC------------------CccHHHHHHHHhhc
Confidence            8999998  4553   33444  347999999999773                  23666677776654

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.67  E-value=5.2e-16  Score=144.52  Aligned_cols=139  Identities=15%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             ccCCEEEeCCCCCC--cccchH-HHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccC-ceeeeee
Q psy14047        116 GQVNGVLIPGGGAS--FYADDG-YAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCD-CFYENLA  191 (350)
Q Consensus       116 ~~~dgvIipG~g~~--~~~~~~-~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~-~~~~~~~  191 (350)
                      ..+||+|++|+...  ..+... |.+. ..+++++++..     +|+||||.|+|+++.++||...  ...+ ...+..+
T Consensus        98 ~~~DG~IITGAp~e~~~fedv~YW~El-~~i~~w~~~~~-----~s~LgICwGaQa~a~algGi~k--~~~~~K~~Gv~~  169 (302)
T PRK05368         98 EKFDGLIITGAPVEQLPFEDVDYWDEL-KEILDWAKTHV-----TSTLFICWAAQAALYHLYGIPK--YTLPEKLSGVFE  169 (302)
T ss_pred             CCCCEEEEcCCCCCCccCCCCchHHHH-HHHHHHHHHcC-----CCEEEEcHHHHHHHHHcCCCcc--CCCCCceeEEEE
Confidence            57999999998865  333333 4332 25777877653     9999999999999999999522  2212 1112222


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      ...+  ...++|++++++.+        .+.+.|...|..+..   .++++++|||.| +.++   ++++..++.+++++
T Consensus       170 ~~~~--~~~~pL~~g~~d~F--------~~phSr~~~V~~~~i---~~~~~l~vLA~S-~~~g---v~~~~~~~~r~~~v  232 (302)
T PRK05368        170 HRVL--DPHHPLLRGFDDSF--------LVPHSRYTEVREEDI---RAATGLEILAES-EEAG---VYLFASKDKREVFV  232 (302)
T ss_pred             EEEc--CCCChhhcCCCCcc--------ccceeehhhccHHHh---ccCCCCEEEecC-CCCC---eEEEEeCCCCEEEE
Confidence            2221  23668888888765        366777777743222   578999999998 7777   77887767689999


Q ss_pred             cccCCcCC
Q psy14047        272 QFHPEKNA  279 (350)
Q Consensus       272 QfHPE~~~  279 (350)
                      |+|||...
T Consensus       233 QgHPEYd~  240 (302)
T PRK05368        233 TGHPEYDA  240 (302)
T ss_pred             ECCCCCCH
Confidence            99999764

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.61  E-value=9.5e-15  Score=125.91  Aligned_cols=165  Identities=15%  Similarity=0.142  Sum_probs=94.6

Q ss_pred             CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047          7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA   86 (350)
Q Consensus         7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~   86 (350)
                      ..|||++.+..              ..+..++|++.|+.++.+..   .++    ++.+|+|+||||....         
T Consensus         3 ~~igVLalqG~--------------~~Eh~~al~~lG~~v~~v~~---~~~----l~~~D~LILPGG~~t~---------   52 (179)
T PRK13526          3 QKVGVLAIQGG--------------YQKHADMFKSLGVEVKLVKF---NND----FDSIDRLVIPGGESTT---------   52 (179)
T ss_pred             cEEEEEECCcc--------------HHHHHHHHHHcCCcEEEECC---HHH----HhCCCEEEECCChHHH---------
Confidence            57999998753              14577899999998766652   222    4678888888875321         


Q ss_pred             ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047         87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF  166 (350)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~  166 (350)
                                                                   .+..+...  .+.+.++++.+ +  +||+|||.|+
T Consensus        53 ---------------------------------------------~~~ll~~~--~l~~~Ik~~~~-~--kpilGICaG~   82 (179)
T PRK13526         53 ---------------------------------------------LLNLLNKH--QIFDKLYNFCS-S--KPVFGTCAGS   82 (179)
T ss_pred             ---------------------------------------------HHHHhhhc--CcHHHHHHHHc-C--CcEEEEcHHH
Confidence                                                         01111111  26677777763 4  7999999999


Q ss_pred             HHHHHHhcCccccCCccCceeeeeeceeecCCCCCcc-cccCCchhHHhhcccceEEEeecceeecCCCccccccccceE
Q psy14047        167 QLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLL-YSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV  245 (350)
Q Consensus       167 QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~l-f~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~v  245 (350)
                      |+|+....    +++..+....+........+-...+ +.+.          .....+.....+.       +++++.++
T Consensus        83 qlL~~~s~----~Lg~idg~V~Rn~~Grq~~sf~~~~~~~~~----------~~~~vFiRAP~i~-------~~~~~v~v  141 (179)
T PRK13526         83 IILSKGEG----YLNLLDLEVQRNAYGRQVDSFVADISFNDK----------NITGVFIRAPKFI-------VVGNQVDI  141 (179)
T ss_pred             HHHHccCC----CCCCccEEEEEcCCCCccceeeeecCcCCc----------eEEEEEEcCceEe-------EcCCCcEE
Confidence            99998521    2333333222111100000000000 0111          0123334444444       67899999


Q ss_pred             EEEeecCCCceEEEEEEcCCccEEEEcccCCcCC
Q psy14047        246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNA  279 (350)
Q Consensus       246 la~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~  279 (350)
                      ||+  .++.   +-+++-  .+++|+-||||.+.
T Consensus       142 la~--~~~~---~v~v~q--~~~l~~~FHPElt~  168 (179)
T PRK13526        142 LSK--YQNS---PVLLRQ--ANILVSSFHPELTQ  168 (179)
T ss_pred             EEE--ECCE---EEEEEE--CCEEEEEeCCccCC
Confidence            998  4443   445553  47999999999763

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.60  E-value=2.6e-14  Score=128.57  Aligned_cols=207  Identities=19%  Similarity=0.207  Sum_probs=116.8

Q ss_pred             EEEEEccCCCCCCCCCCCCcccchhHHHHHHHH-HcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047          8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVE-ASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA   86 (350)
Q Consensus         8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~-~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~   86 (350)
                      .|+|+..+..            ....+.+++++ .+|+.+..++....      .++..|+|+||||...-+  ..    
T Consensus         2 ~v~Vl~~~G~------------n~~~d~~~a~~~~~G~~~~~v~~~~~------~l~~~D~lvipGG~~~~d--~l----   57 (219)
T PRK03619          2 KVAVIVFPGS------------NCDRDMARALRDLLGAEPEYVWHKET------DLDGVDAVVLPGGFSYGD--YL----   57 (219)
T ss_pred             EEEEEecCCc------------ChHHHHHHHHHhcCCCeEEEEecCcC------CCCCCCEEEECCCCchhh--hh----
Confidence            4788887643            12355678998 89999888876432      267889999999862110  00    


Q ss_pred             ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047         87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF  166 (350)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~  166 (350)
                                        +                  .|  .    .....    .+.++++++.++|  +||+|||.|+
T Consensus        58 ------------------~------------------~~--~----~~~~~----~~~~~l~~~~~~g--~~ilgIC~G~   89 (219)
T PRK03619         58 ------------------R------------------CG--A----IAAFS----PIMKAVKEFAEKG--KPVLGICNGF   89 (219)
T ss_pred             ------------------c------------------cc--h----hhhch----HHHHHHHHHHHCC--CEEEEECHHH
Confidence                              0                  00  0    00011    3567777777777  9999999999


Q ss_pred             HHHHHH--hcCccccCCccCce-eeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeec---ceeecCCCcccccc
Q psy14047        167 QLLLYT--SNNENELRTRCDCF-YENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHM---WCITPSNFTDNGLA  240 (350)
Q Consensus       167 QlLa~a--~Gg~v~~~~~~~~~-~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~---~~v~~~~~~~~~L~  240 (350)
                      |+|+.+  ++|++. ....... ..+..++.  ....+.+++.+....      ...+...|+   +.+..+..  +.|.
T Consensus        90 qlLa~~GLL~g~l~-~n~~~~~~~~~v~v~i--~~~~~~~~~~~~~g~------~~~~~~aH~~~r~~~~~~~~--~~l~  158 (219)
T PRK03619         90 QILTEAGLLPGALT-RNASLKFICRDVHLRV--ENNDTPFTSGYEKGE------VIRIPIAHGEGNYYADEETL--KRLE  158 (219)
T ss_pred             HHHHHcCCCCCeEE-EcCCCcEEEEEEEEEE--CCCCChhhcCCCCCC------EEEEEEEcCcccEEECHHHH--HHHH
Confidence            999997  677653 2222211 12222221  223455665553211      011223444   33321111  1453


Q ss_pred             -ccceEEEEee--cCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        241 -KEWKVLSTNS--NNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       241 -~~~~vla~s~--~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                       .++.++..+.  +++...-|+++...+..++|+|||||+....+.      |+    ..++.||..|++
T Consensus       159 ~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~------~~----~~g~~lf~~~v~  218 (219)
T PRK03619        159 GNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLL------GS----TDGLKLFESLLK  218 (219)
T ss_pred             hCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccCcc------CC----CcCHHHHHHHhh
Confidence             3455444420  334333477777766679999999999865332      21    247889999975

>KOG0623|consensus

Probab=99.58  E-value=7.7e-15  Score=134.58  Aligned_cols=177  Identities=20%  Similarity=0.254  Sum_probs=113.7

Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc--CccccCCccCceee-
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN--NENELRTRCDCFYE-  188 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G--g~v~~~~~~~~~~~-  188 (350)
                      |.++.++|.+|+||.|.+...++.+.+.+  +.+.++++.++|  +|++|||.|.|+|....-  +...+++.++.... 
T Consensus        34 P~DI~~a~rLIfPGVGnfg~~~D~L~~~G--f~eplr~Yiesg--kPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~R  109 (541)
T KOG0623|consen   34 PGDILNADRLIFPGVGNFGPAMDVLNRTG--FAEPLRKYIESG--KPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGR  109 (541)
T ss_pred             chhhccCceEeecCcccchHHHHHHhhhh--hHHHHHHHHhcC--CCeEeehhhHHHHhcccccCCCcCcccccccceec
Confidence            34577899999999999999999988876  889999999999  999999999999985321  11223333332221 


Q ss_pred             ------eeec-ee--ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccc-ccceEEEEeecCCCceEE
Q psy14047        189 ------NLAL-EF--MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFI  258 (350)
Q Consensus       189 ------~~~i-~~--~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v  258 (350)
                            .+|. .+  -....++.+|...|.         ..+|+.|++-......   .|+ ++|++...  .-+.++||
T Consensus       110 FD~s~k~VPhIGWNsc~v~sd~effg~~p~---------~~~YFVHSyl~~ek~~---~len~~wkiat~--kYG~E~Fi  175 (541)
T KOG0623|consen  110 FDASAKIVPHIGWNSCQVGSDSEFFGDVPN---------RHVYFVHSYLNREKPK---SLENKDWKIATC--KYGSESFI  175 (541)
T ss_pred             ccCCCCcCCcccccccccCCcccccccCCC---------ceEEEEeeeccccccc---CCCCCCceEeee--ccCcHHHH
Confidence                  1221 11  112233444554444         3689999996553322   333 56877443  34446788


Q ss_pred             EEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHhhhhc
Q psy14047        259 SSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYN  329 (350)
Q Consensus       259 ~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~~~~~~l~~n  329 (350)
                      .+|...  +|+++|||||++..                .+....+.|+.   +......|.+.  +.|+.|
T Consensus       176 ~ai~kn--N~~AtQFHPEKSG~----------------aGL~vl~~FL~---~~~ppips~e~--~kl~en  223 (541)
T KOG0623|consen  176 SAIRKN--NVHATQFHPEKSGE----------------AGLSVLRRFLH---QQSPPIPSAET--QKLMEN  223 (541)
T ss_pred             HHHhcC--ceeeEecccccccc----------------hhHHHHHHHHh---ccCCCCCchhh--hhhhhc
Confidence            888754  69999999999852                45667777776   22333445443  445555

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.58  E-value=1.5e-13  Score=120.71  Aligned_cols=205  Identities=21%  Similarity=0.223  Sum_probs=116.1

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhc-ccceEEcCCCCcccccCCcc
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG-QVNGVLIPGGGASFYADDGY   83 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~-~~dGli~~GG~~dv~~~~~~   83 (350)
                      .+|.|+|+-.|..   +.         ......+++.+|+.+..++..+..      +. ..|+|++|||=+        
T Consensus         1 ~~~kvaVi~fpGt---N~---------d~d~~~A~~~aG~~~~~V~~~d~~------~~~~~d~vv~pGGFS--------   54 (231)
T COG0047           1 ARPKVAVLRFPGT---NC---------DYDMAAAFERAGFEAEDVWHSDLL------LGRDFDGVVLPGGFS--------   54 (231)
T ss_pred             CCceEEEEEcCCc---Cc---------hHHHHHHHHHcCCCceEEEeeecc------cCCCccEEEEcCCCC--------
Confidence            3799999998864   11         145567889999999999986532      34 577788887752        


Q ss_pred             cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCccc-chHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047         84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYA-DDGYAKAGAMIYKIAKEFNENRDYFPIMGI  162 (350)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~-~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI  162 (350)
                                                                   ..+. +..+......+.+.++++.++|  +|+|||
T Consensus        55 ---------------------------------------------yGDyLr~Gaiaa~~~v~~~v~~~a~~g--~~vLGI   87 (231)
T COG0047          55 ---------------------------------------------YGDYLRAGAIAAIAPVMDEVREFAEKG--KPVLGI   87 (231)
T ss_pred             ---------------------------------------------cccccCcchHHhhHHHHHHHHHHHHCC--CeEEEE
Confidence                                                         1110 1112222235788888888888  999999


Q ss_pred             hHHHHHHHHH--hcCccccCCccCce-eeeeeceeecCCCCCcccccCCc-------------------hhHHhhc-ccc
Q psy14047        163 CLGFQLLLYT--SNNENELRTRCDCF-YENLALEFMPSFRQSLLYSRAPI-------------------HVLQELA-TSH  219 (350)
Q Consensus       163 C~G~QlLa~a--~Gg~v~~~~~~~~~-~~~~~i~~~~~~~~~~lf~~~~~-------------------~~~~~~~-~~~  219 (350)
                      |.|+|+|..+  +-|.+. +...... .....+...  ...+...+.+..                   ...+++. +..
T Consensus        88 CNGfQiL~e~gLlPGal~-~N~s~~F~cr~v~l~V~--~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngq  164 (231)
T COG0047          88 CNGFQILSEAGLLPGALT-RNESLRFECRWVYLRVE--NNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQ  164 (231)
T ss_pred             cchhHHHHHcCcCCccee-cCCCCceEEEEEEEEEe--cCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCe
Confidence            9999999954  123221 2222111 111222111  112222222211                   1111122 223


Q ss_pred             eEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHH
Q psy14047        220 ITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENAR  299 (350)
Q Consensus       220 ~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~  299 (350)
                      .++.|+.....            .+- ..+ +++...-|++|...+++|+|++.||||....|...          ++.+
T Consensus       165 vvfrY~d~~G~------------~~~-~~N-PNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~----------~Dg~  220 (231)
T COG0047         165 VVFRYVDNNGE------------TEE-YAN-PNGSVNGIAGITNEDGNVLGMMPHPERASESLLGG----------EDGL  220 (231)
T ss_pred             EEEEEecCCCc------------eee-eeC-CCCChhhceeEEcCCCCEEEecCCchhhhhcccCC----------chHH
Confidence            33443321111            000 122 44555569999999999999999999997766432          3478


Q ss_pred             HHHHHHHHHH
Q psy14047        300 YFFDWLVSQA  309 (350)
Q Consensus       300 ~i~~~Fv~~~  309 (350)
                      ++|...++.+
T Consensus       221 ~lF~s~~~~~  230 (231)
T COG0047         221 RLFRSARKYL  230 (231)
T ss_pred             HHHHHHHHhh
Confidence            8888776653

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=99.57  E-value=4.9e-15  Score=127.11  Aligned_cols=170  Identities=18%  Similarity=0.250  Sum_probs=93.8

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...++.|+++|+.++.+...++       |+.+||||||||.+..                                   
T Consensus         9 ~EH~~~l~~lg~~~~~Vr~~~d-------L~~~dgLIiPGGESTt-----------------------------------   46 (188)
T PF01174_consen    9 REHIRMLERLGAEVVEVRTPED-------LEGLDGLIIPGGESTT-----------------------------------   46 (188)
T ss_dssp             HHHHHHHHHTTSEEEEE-SGGG-------GTT-SEEEE-SS-HHH-----------------------------------
T ss_pred             HHHHHHHHHcCCCeEEeCCHHH-------HccCCEEEECCCcHHH-----------------------------------
Confidence            6678899999999977765332       5778999999987431                                   


Q ss_pred             HHhccCCEEEeCCCCCCcccchHH-HHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc-cccCCccCceeeee
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGY-AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE-NELRTRCDCFYENL  190 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~-~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~-v~~~~~~~~~~~~~  190 (350)
                                          +..+ .+.  .|++.++++..+| .+||||+|.|+.+|+....+. ...++.++...   
T Consensus        47 --------------------i~~ll~~~--gL~~~l~~~~~~g-~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V---  100 (188)
T PF01174_consen   47 --------------------IGKLLRRY--GLFEPLREFIRSG-SKPVWGTCAGLILLAKEVEGQGQPLLGLLDITV---  100 (188)
T ss_dssp             --------------------HHHHHHHT--THHHHHHHHHHTT---EEEEETHHHHHHEEEECSSCCTSS--EEEEE---
T ss_pred             --------------------HHHHHHHc--CCHHHHHHHHHcC-CCceeehhHHHHHhhhhhhhcccccccceeEEE---
Confidence                                1112 222  3778888888775 489999999999999765443 11122111111   


Q ss_pred             eceeecCCCCCcccccCCchhHH-----hhcccceEEEeecceeecCCCcccccc--ccceEEEEeecCCCceEEEEEEc
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQ-----ELATSHITHNWHMWCITPSNFTDNGLA--KEWKVLSTNSNNRGLKFISSVEH  263 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~-----~~~~~~~v~~~H~~~v~~~~~~~~~L~--~~~~vla~s~~~~~~e~v~ai~~  263 (350)
                      ..|    .     |+..-++|..     .++......+..-..+.       ++.  ++.+++|+  .++.   +-+++ 
T Consensus       101 ~RN----a-----fGrQ~~SFe~~l~i~~~~~~~~avFIRAP~I~-------~v~~~~~v~vla~--~~g~---iVav~-  158 (188)
T PF01174_consen  101 RRN----A-----FGRQLDSFEADLDIPGLGEPFPAVFIRAPVIE-------EVGSPEGVEVLAE--LDGK---IVAVR-  158 (188)
T ss_dssp             ETT----T-----TCSSSCEEEEEEEETTTESEEEEEESS--EEE-------EE--TTTEEEEEE--ETTE---EEEEE-
T ss_pred             Ecc----c-----cccchhcEEEEEEeecCCCcEEEEEcCCcEEE-------Eeecccccccccc--cccc---eEEEE-
Confidence            111    0     1111111100     00111233444444454       455  68899998  4443   44555 


Q ss_pred             CCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        264 KVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       264 ~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                       ..+++|+-||||.+.                 ++.++.++|++.+.
T Consensus       159 -qgn~latsFHPELT~-----------------D~~r~H~yFl~~v~  187 (188)
T PF01174_consen  159 -QGNILATSFHPELTD-----------------DDTRIHEYFLEMVV  187 (188)
T ss_dssp             -ETTEEEESS-GGGSS-----------------THCHHHHHHHHHHC
T ss_pred             -ecCEEEEEeCCcccC-----------------chhHHHHHHHHHhh
Confidence             237999999999763                 12578889988874

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.55  E-value=2.3e-13  Score=125.10  Aligned_cols=55  Identities=20%  Similarity=0.355  Sum_probs=38.3

Q ss_pred             CCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCC-c-hHHHHhHHHHHHHHHHHHHc
Q psy14047        253 RGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPH-T-RIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       253 ~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h-~-~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +...-|++|..++++++|++.||||....|.-    +| + ...-.++..||+.+++..++
T Consensus       203 Gs~~~IAGi~~~~G~vlglMpHPEr~~~~~~~----~~~~~~~~~~~g~~~f~~~~~~~~~  259 (261)
T PRK01175        203 GSIYNIAGITNEKGNVIGLMPHPERAFYGYQH----PYWEKEEDYGDGKIFFDSLINYLRK  259 (261)
T ss_pred             CChhhcceeECCCCCEEEEcCCHHHhhchhhc----cccccccCCCchHHHHHHHHHHHHh
Confidence            33345899999999999999999999776531    11 0 01113678999998876554

>KOG2387|consensus

Probab=99.47  E-value=1.8e-13  Score=129.47  Aligned_cols=163  Identities=25%  Similarity=0.374  Sum_probs=95.5

Q ss_pred             hhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee
Q psy14047        109 LKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE  188 (350)
Q Consensus       109 ~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~  188 (350)
                      .+.++.|..+|||++|||...-    ..+-.. ...+|+++   +  ++|.||||+|||+-...+..++.++.+......
T Consensus       355 ~~aW~~l~~adGilvPGGFG~R----GveG~i-~Aak~ARe---n--~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF  424 (585)
T KOG2387|consen  355 HAAWQKLKSADGILVPGGFGDR----GVEGKI-LAAKWARE---N--KIPFLGICLGMQLAVIEFARNVLGLKDANSTEF  424 (585)
T ss_pred             HHHHHHhccCCeEEeCCccccc----chhHHH-HHHHHHHh---c--CCCeEeeehhhhHHHHHHHHHhhCCCCCCcccc
Confidence            3467899999999999987632    221100 13455555   3  399999999999999999887655554433221


Q ss_pred             ----eeec-eeecC------------CCCCcccccCCchhHHhhc-ccceEE--EeecceeecCCCccccc-cccceEEE
Q psy14047        189 ----NLAL-EFMPS------------FRQSLLYSRAPIHVLQELA-TSHITH--NWHMWCITPSNFTDNGL-AKEWKVLS  247 (350)
Q Consensus       189 ----~~~i-~~~~~------------~~~~~lf~~~~~~~~~~~~-~~~~v~--~~H~~~v~~~~~~~~~L-~~~~~vla  247 (350)
                          ..|+ -+.+.            +.....|..-. ....++. +...|-  +.|.|.|.|....  .| ..|+...+
T Consensus       425 ~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~-s~~~kLYG~~~~V~ERHRHRyEVNP~~v~--~le~~Gl~FvG  501 (585)
T KOG2387|consen  425 DPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKD-SKLRKLYGNVEFVDERHRHRYEVNPEMVK--QLEQAGLSFVG  501 (585)
T ss_pred             CCCCCCcEEEECcCCCcccccceeeecccceeeecCc-hHHHHHhCCchhhhhhhhcceecCHHHHH--HHHhcCcEEEe
Confidence                1111 11111            11112233322 2223333 334454  4455555443221  23 35899999


Q ss_pred             EeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCCCCCch
Q psy14047        248 TNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTR  292 (350)
Q Consensus       248 ~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~  292 (350)
                      .  +..+.. .+.+|.+++|+| |+|||||.     .+++..|++.
T Consensus       502 k--d~~g~r-meI~El~~HP~fVg~QfHPE~-----~srp~kpsp~  539 (585)
T KOG2387|consen  502 K--DVTGKR-MEIIELESHPFFVGVQFHPEF-----KSRPDKPSPL  539 (585)
T ss_pred             e--cCCCcE-EEEEEcCCCCceeeeccCHHH-----hcCCCCCCcc
Confidence            8  444443 889999999976 99999994     4555556543

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.33  E-value=9.1e-12  Score=113.59  Aligned_cols=188  Identities=21%  Similarity=0.163  Sum_probs=98.0

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .+++++++++|+.+..++....... ...++.+|||+||||...-+  .    .                          
T Consensus        13 ~~~~~al~~aG~~v~~v~~~~~~~~-~~~l~~~d~liipGG~~~~d--~----l--------------------------   59 (238)
T cd01740          13 RDMAYAFELAGFEAEDVWHNDLLAG-RKDLDDYDGVVLPGGFSYGD--Y----L--------------------------   59 (238)
T ss_pred             HHHHHHHHHcCCCEEEEeccCCccc-cCCHhhCCEEEECCCCCccc--c----c--------------------------
Confidence            6788999999999999988643211 11256788888888862111  0    0                          


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH--hcCccccCCccCceee-e
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT--SNNENELRTRCDCFYE-N  189 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a--~Gg~v~~~~~~~~~~~-~  189 (350)
                                  +.+... ..+.      .+.++++++.++|  +||||||.|+|+|+.+  ++|.+. ......... .
T Consensus        60 ------------~~~~~~-~~~~------~~~~~l~~~~~~g--~pvlGIC~G~QlL~~~gll~g~~~-~~~~~~~~~~~  117 (238)
T cd01740          60 ------------RAGAIA-AASP------LLMEEVKEFAERG--GLVLGICNGFQILVELGLLPGALI-RNKGLKFICRW  117 (238)
T ss_pred             ------------cccccc-ccCh------hHHHHHHHHHhCC--CeEEEECcHHHHHHHcCCCccccc-cCCCCceeccc
Confidence                        000000 0000      0456677777777  9999999999999997  777643 111111111 0


Q ss_pred             --eeceeecCCCCCcccccC-CchhHHhhcccceEEEeecceeecCCCc-cccccccceEEEE-------------eecC
Q psy14047        190 --LALEFMPSFRQSLLYSRA-PIHVLQELATSHITHNWHMWCITPSNFT-DNGLAKEWKVLST-------------NSNN  252 (350)
Q Consensus       190 --~~i~~~~~~~~~~lf~~~-~~~~~~~~~~~~~v~~~H~~~v~~~~~~-~~~L~~~~~vla~-------------s~~~  252 (350)
                        .-++.......+.+++.+ +..       ...++..|..+--..+-. ...|-+.-++.-.             | ++
T Consensus       118 ~~~~v~~~v~~~~si~t~~~~~g~-------~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~N-Pn  189 (238)
T cd01740         118 QNRFVTLRVENNDSPFTKGYMEGE-------VLRIPVAHGEGRFYADDETLAELEENGQIAQYVDDDGNVTERYPAN-PN  189 (238)
T ss_pred             cCceEEEEEcCCCCceecCCCCCC-------EEEEEeECCceeeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCC-CC
Confidence              001111112233333331 111       112444454321100000 0011111111101             1 23


Q ss_pred             CCceEEEEEEcCCccEEEEcccCCcCCcccc
Q psy14047        253 RGLKFISSVEHKVYPFAGIQFHPEKNAYEWK  283 (350)
Q Consensus       253 ~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~  283 (350)
                      +...-|++|..++++++|++.||||....|.
T Consensus       190 Gs~~~iAgi~~~~GrvlglMphPer~~~~~q  220 (238)
T cd01740         190 GSLDGIAGICNEDGRVLGMMPHPERAVEPWQ  220 (238)
T ss_pred             CChhcceEEEcCCCCEEEEcCChHHcccccc
Confidence            3334599999999999999999999977654

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=99.32  E-value=2.1e-11  Score=111.82  Aligned_cols=102  Identities=25%  Similarity=0.295  Sum_probs=58.9

Q ss_pred             CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047          6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK   85 (350)
Q Consensus         6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~   85 (350)
                      ||.++|+.-+..   +         .+.+...+++.+|+.+..+....-.. -+..|+.+++|+||||-+--+.      
T Consensus         1 kpkV~Vl~~pGt---N---------ce~e~~~A~~~aG~~~~~v~~~dl~~-~~~~l~~~~~lvipGGFS~gD~------   61 (259)
T PF13507_consen    1 KPKVAVLRFPGT---N---------CERETAAAFENAGFEPEIVHINDLLS-GESDLDDFDGLVIPGGFSYGDY------   61 (259)
T ss_dssp             --EEEEEE-TTE---E---------EHHHHHHHHHCTT-EEEEEECCHHHT-TS--GCC-SEEEE-EE-GGGGT------
T ss_pred             CCEEEEEECCCC---C---------CHHHHHHHHHHcCCCceEEEEEeccc-ccCchhhCcEEEECCccCcccc------
Confidence            688999988754   1         23667789999999999887642100 0124778888888888632220      


Q ss_pred             cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHH---HHHHHHHHHHhhC-CCCccEEE
Q psy14047         86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAG---AMIYKIAKEFNEN-RDYFPIMG  161 (350)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~---~~l~~~i~~~~~~-g~~~PIlG  161 (350)
                                                            +|++.      -+....   ..+.+.++++.++ |  +|+||
T Consensus        62 --------------------------------------l~sg~------~~a~~~~~~~~~~~~i~~f~~~~g--~~vLG   95 (259)
T PF13507_consen   62 --------------------------------------LRSGA------IAAARLLFNSPLMDAIREFLERPG--GFVLG   95 (259)
T ss_dssp             --------------------------------------TSTTH------HHHHHHCCSCCCHHHHHHHHHCTT---EEEE
T ss_pred             --------------------------------------chHHH------HHHHHhhccHHHHHHHHHHHhcCC--CeEEE
Confidence                                                  01110      111100   0246777888877 6  99999


Q ss_pred             ehHHHHHHHHH
Q psy14047        162 ICLGFQLLLYT  172 (350)
Q Consensus       162 IC~G~QlLa~a  172 (350)
                      ||.|+|+|...
T Consensus        96 IcNGfQiL~~~  106 (259)
T PF13507_consen   96 ICNGFQILVEL  106 (259)
T ss_dssp             ECHHHHHHCCC
T ss_pred             EchHhHHHHHh
Confidence            99999999975

>KOG3210|consensus

Probab=99.21  E-value=1e-10  Score=97.45  Aligned_cols=61  Identities=26%  Similarity=0.331  Sum_probs=47.6

Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE  176 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~  176 (350)
                      +++++++|++|+|||.+..  +..+.... .|.+-+.++..++ .+|+||+|.||.+|...+.|.
T Consensus        51 ~~D~aq~DaLIIPGGEST~--mslia~~t-gL~d~L~~fVhn~-~k~~WGTCAGmI~LS~ql~ne  111 (226)
T KOG3210|consen   51 KNDLAQCDALIIPGGESTA--MSLIAERT-GLYDDLYAFVHNP-SKVTWGTCAGMIYLSQQLSNE  111 (226)
T ss_pred             HHHHhhCCEEEecCCchhH--HHHHHhhh-hhHHHHHHHhcCC-CccceeechhhhhhhhhhcCC
Confidence            5678999999999999876  34443322 3777777888776 499999999999999887664

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=99.03  E-value=1.7e-08  Score=109.28  Aligned_cols=49  Identities=14%  Similarity=-0.039  Sum_probs=34.2

Q ss_pred             CCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        252 NRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       252 ~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      ++...-|++|...+++++|.+.||||....+...    .+   -..++.||...++
T Consensus      1189 NGS~~~IaGi~s~dGrvlg~MpHpER~~~~~~~~----~~---g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857      1189 NGSSLAIEGITSPDGRIFGKMGHSERYGDGLFKN----IP---GNKDQHLFASGVK 1237 (1239)
T ss_pred             CCChhhhhEeECCCCCEEEECCCcccccCcccCC----CC---chhhhHHHHHHHh
Confidence            3333458999999999999999999986543321    11   1246888888774

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.83  E-value=1.3e-07  Score=104.04  Aligned_cols=28  Identities=14%  Similarity=0.014  Sum_probs=24.7

Q ss_pred             eEEEEEEcCCccEEEEcccCCcCCcccc
Q psy14047        256 KFISSVEHKVYPFAGIQFHPEKNAYEWK  283 (350)
Q Consensus       256 e~v~ai~~~~~~i~gvQfHPE~~~~~~~  283 (350)
                      .-|++|...+++++|++.||||....|+
T Consensus      1237 ~~IaGi~s~dGrvlglMpHPEr~~~~~q 1264 (1290)
T PRK05297       1237 NGITGLTTADGRVTIMMPHPERVFRTVQ 1264 (1290)
T ss_pred             hcceEeECCCCCEEEEcCChHHhcchhh
Confidence            3589999999999999999999987764

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.80  E-value=2.3e-08  Score=88.74  Aligned_cols=84  Identities=20%  Similarity=0.327  Sum_probs=58.0

Q ss_pred             ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhh
Q psy14047         28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQS  107 (350)
Q Consensus        28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (350)
                      .++.-...+++|+++|+.++.++...+.+     +..+|+|+||||...+.                             
T Consensus         9 F~f~y~e~~~~l~~~G~~v~~~s~~~~~~-----l~~~D~lilPGG~~~~~-----------------------------   54 (198)
T cd03130           9 FNFYYPENLELLEAAGAELVPFSPLKDEE-----LPDADGLYLGGGYPELF-----------------------------   54 (198)
T ss_pred             cccccHHHHHHHHHCCCEEEEECCCCCCC-----CCCCCEEEECCCchHHH-----------------------------
Confidence            45555788899999999998887632211     33478888888752211                             


Q ss_pred             hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                                               .+.+.+. ..+.+.++++.++|  +||+|||.|+|+|+..+
T Consensus        55 -------------------------~~~L~~~-~~~~~~i~~~~~~g--~pilgICgG~qlL~~~~   92 (198)
T cd03130          55 -------------------------AEELSAN-QSMRESIRAFAESG--GPIYAECGGLMYLGESL   92 (198)
T ss_pred             -------------------------HHHHHhh-HHHHHHHHHHHHcC--CCEEEEcccHHHHHHHh
Confidence                                     1222211 13677788888777  99999999999999876

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.78  E-value=1.2e-07  Score=103.69  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=37.9

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG   74 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~   74 (350)
                      .||.++|+.-+..   +.         ..+...+++.+|+.+..+....-.+. ...|+.++||+++||-
T Consensus      1036 ~~pkVaVl~~pGt---N~---------~~e~~~Af~~aGf~~~~V~~~dl~~~-~~~L~~~~glv~pGGF 1092 (1307)
T PLN03206       1036 SKPKVAIIREEGS---NG---------DREMAAAFYAAGFEPWDVTMSDLLNG-RISLDDFRGIVFVGGF 1092 (1307)
T ss_pred             CCCeEEEEECCCC---CC---------HHHHHHHHHHcCCceEEEEeeecccc-cccccceeEEEEcCcC
Confidence            5799999988864   11         25666789999999877776421111 1225677778888775

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.76  E-value=2.1e-07  Score=102.36  Aligned_cols=58  Identities=21%  Similarity=0.265  Sum_probs=37.9

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG   74 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~   74 (350)
                      ..+|.++|+.-+..   +.         ..+...+++.+|+.+..+...+-... ..-|+.++||+++||-
T Consensus      1053 ~~~p~vail~~pG~---N~---------~~e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGF 1110 (1310)
T TIGR01735      1053 GVRPKVAILREQGV---NG---------DREMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGF 1110 (1310)
T ss_pred             CCCceEEEEECCCC---CC---------HHHHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCC
Confidence            35789999988764   11         25566789999999888776431110 0025667888888885

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.70  E-value=1.4e-07  Score=93.76  Aligned_cols=26  Identities=38%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                      |.+.++++   |  +||||||.|||||+...
T Consensus        57 l~~~i~~~---g--~pvlGICgG~QmLg~~~   82 (476)
T PRK06278         57 LKKEILNF---D--GYIIGICSGFQILSEKI   82 (476)
T ss_pred             HHHHHHHc---C--CeEEEEcHHHHhccccc
Confidence            45555555   5  99999999999999875

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.58  E-value=1.8e-07  Score=82.73  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .++.++++..|+.++.++...+       ++.+|+|+||||. +..                                  
T Consensus        13 ~~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~-~~~----------------------------------   50 (194)
T cd01750          13 TDLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSK-DTI----------------------------------   50 (194)
T ss_pred             HHHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCc-chH----------------------------------
Confidence            5566788889999998887654       4577888888887 321                                  


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                                        .+.......  .+.+.++++.++|  +||||||.|+|+|+..+.
T Consensus        51 ------------------~~~~~~~~~--~~~~~i~~~~~~g--~pvlgiC~G~qlL~~~~~   90 (194)
T cd01750          51 ------------------QDLAWLRKR--GLAEAIKNYARAG--GPVLGICGGYQMLGKYIV   90 (194)
T ss_pred             ------------------HHHHHHHHc--CHHHHHHHHHHCC--CcEEEECHHHHHhhhhcc
Confidence                              001111111  2566777777777  999999999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=98.49  E-value=2.2e-07  Score=80.30  Aligned_cols=112  Identities=12%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             hccCCEEEeCCCCCCccc---chHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        115 LGQVNGVLIPGGGASFYA---DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~---~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                      ..++||+|++|...-..+   .+.|... ..+++++++..     .|+||||.|+|+...+++|......+....+. .+
T Consensus        60 ~~~yDGlIITGApve~~~fe~v~Yw~El-~~i~dwa~~~v-----~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gv-f~  132 (175)
T cd03131          60 DAKFDGLIVTGAPVEHLPFEQVDYWEEL-TEILDWAKTHV-----TSTLFSCWAAMAALYYFYGIKKHQLPEKIFGV-FP  132 (175)
T ss_pred             ccCCCEEEEeCCCcccCCccccchHHHH-HHHHHHHHHhC-----cchHHHHHHHHHHHHHHcCcccccCCCceEEE-EE
Confidence            578999999997663322   2334443 36788888654     99999999999999999997432222222332 23


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLS  247 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla  247 (350)
                      ....   ..++|++++++.+        .+-+.|...+.....   .-.++++|+|
T Consensus       133 ~~~~---~~hpL~~g~~d~F--------~~PhSR~~~v~~~~~---~~~~~l~il~  174 (175)
T cd03131         133 HTIL---EPHPLLRGLDDGF--------DVPHSRYAEVDREDI---EEAAGLTILA  174 (175)
T ss_pred             eeec---CCCccccCCCCce--------eecCcccccCCHHHH---hhCCCCEEcc
Confidence            2221   1678888888765        355555555643221   1245666664

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PHA03366 FGAM-synthase; Provisional

Probab=98.47  E-value=2.7e-06  Score=93.80  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=39.8

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA   75 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~   75 (350)
                      ..||.++|+.-+..   +.         ..+...+++++|+.+..+....-...  +.|+.++||+++||-+
T Consensus      1026 ~~~prVaIl~~pG~---N~---------~~e~~~Af~~aGf~~~~v~~~dL~~~--~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366       1026 DKRHRVAVLLLPGC---PG---------PHALLAAFTNAGFDPYPVSIEELKDG--TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred             CCCCeEEEEECCCC---CC---------HHHHHHHHHHcCCceEEEEeecCCCC--CccccceEEEEcCCCC
Confidence            45799999998864   21         25667889999999888876431100  1167788888888864

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=98.42  E-value=1.5e-06  Score=80.71  Aligned_cols=140  Identities=19%  Similarity=0.087  Sum_probs=74.2

Q ss_pred             ccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH-HHHHhcCccccCCccCceeeeee
Q psy14047        116 GQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL-LLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       116 ~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql-La~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                      +.+||+|++|..--.   .+.+.|.+.. .+++++++..     .+.|.||.|.|. |....|-.-..+. ....| ..+
T Consensus        97 ~~~DglIITGAPvE~l~Fe~V~YW~El~-~i~dwa~~~v-----~stl~iCWgAqAaLy~~yGI~K~~l~-~KlfG-Vf~  168 (298)
T PF04204_consen   97 RKFDGLIITGAPVEQLPFEEVDYWDELT-EIFDWAKTHV-----TSTLFICWGAQAALYHFYGIPKYPLP-EKLFG-VFE  168 (298)
T ss_dssp             S-EEEEEE---TTTTS-GGGSTTHHHHH-HHHHHHHHHE-----EEEEEETHHHHHHHHHHH----EEEE-EEEEE-EEE
T ss_pred             CCCCEEEEeCCCcCCCCcccCCcHHHHH-HHHHHHHHcC-----CcchhhhHHHHHHHHHHcCCCcccCC-Cccee-cee
Confidence            479999999964432   2234555443 6889999876     999999999999 5555554421111 11122 122


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      ...  ....++|++++++.+        .+-+.-.-.+..+.+   .-.++++|+|.| ++.+   +..+..++++.+=+
T Consensus       169 ~~~--~~~~~pLl~Gfdd~f--------~~PhSR~t~i~~~~i---~~~~~L~vLa~s-~~~G---~~l~~~~d~r~vfi  231 (298)
T PF04204_consen  169 HRV--LDPDHPLLRGFDDTF--------FAPHSRYTEIDRDDI---KKAPGLEVLAES-EEAG---VFLVASKDGRQVFI  231 (298)
T ss_dssp             EEE--S-SS-GGGTT--SEE--------EEEEEEEEE--HHHH---CT-TTEEEEEEE-TTTE---EEEEEECCCTEEEE
T ss_pred             eec--cCCCChhhcCCCccc--------cCCcccccCCCHHHH---hcCCCcEEEecc-CCcc---eEEEEcCCCCEEEE
Confidence            221  224678888887654        222222223332211   236789999998 6666   66677677788889


Q ss_pred             cccCCcCCc
Q psy14047        272 QFHPEKNAY  280 (350)
Q Consensus       272 QfHPE~~~~  280 (350)
                      |.|||+...
T Consensus       232 ~GH~EYd~~  240 (298)
T PF04204_consen  232 TGHPEYDAD  240 (298)
T ss_dssp             -S-TT--TT
T ss_pred             eCCCccChh
Confidence            999997753

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.40  E-value=1.8e-06  Score=73.72  Aligned_cols=58  Identities=22%  Similarity=0.327  Sum_probs=44.8

Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                      +++.++|+|+|||+.....+.......  .+.+.++++.++|  +||+|+|-|+|+|...+-
T Consensus         3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~--~~~~~I~~~~~~G--~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    3 ELPPDADGIYLPGGYPELFALELSRNR--GLKEAIREAAEAG--GPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCCCCCEEEECCCcHHHHHHHHHHHh--CHHHHHHHHHHcC--CcEEEEchHHHHHHHHHh
Confidence            457789999999987654332222222  4778899999998  999999999999998875

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.36  E-value=1.3e-05  Score=88.22  Aligned_cols=58  Identities=17%  Similarity=0.259  Sum_probs=39.6

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA   75 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~   75 (350)
                      ..||.|+|+.-+..   +.         ..+...+++++|+.+..+...+-...  +.|+.++||+++||-+
T Consensus       927 ~~~p~VaIl~~pG~---N~---------~~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfs  984 (1202)
T TIGR01739       927 DPRHQVAVLLLPGQ---SV---------PHGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASG  984 (1202)
T ss_pred             CCCCeEEEEeCCCC---CC---------HHHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCC
Confidence            35788999988764   11         25667889999999888876431110  1256788999988763

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.25  E-value=4.5e-06  Score=83.18  Aligned_cols=79  Identities=22%  Similarity=0.344  Sum_probs=57.7

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...++.|++.|+.++.++...+.+     +..+|+|+||||...+.                                  
T Consensus       260 ~~~~~~L~~~g~~~~~~~~~~d~~-----l~~~d~l~ipGG~~~~~----------------------------------  300 (449)
T TIGR00379       260 QDNLDALTHNAAELVPFSPLEDTE-----LPDVDAVYIGGGFPELF----------------------------------  300 (449)
T ss_pred             HHHHHHHHHCCCEEEEECCccCCC-----CCCCCEEEeCCcHHHHH----------------------------------
Confidence            788899999999999987643221     45789999999873221                                  


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                                          ...+... ..+.+.++++.++|  +||+|+|.|+|+|+..+
T Consensus       301 --------------------~~~l~~~-~~~~~~i~~~~~~G--~pv~g~CgG~~~L~~~i  338 (449)
T TIGR00379       301 --------------------AEELSQN-QALRDSIKTFIHQG--LPIYGECGGLMYLSQSL  338 (449)
T ss_pred             --------------------HHHHHhh-hHHHHHHHHHHHcC--CCEEEEcHHHHHHHhhh
Confidence                                0112110 13677788888888  99999999999999887

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.18  E-value=7.8e-06  Score=81.54  Aligned_cols=95  Identities=17%  Similarity=0.205  Sum_probs=63.3

Q ss_pred             CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047          7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA   86 (350)
Q Consensus         7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~   86 (350)
                      +.|||.--+.           ..+--...++.|++.|+.++.++...+.+     +..+|+|+||||...+.        
T Consensus       246 ~~iava~d~a-----------f~f~y~e~~~~L~~~g~~~~~~~~~~~~~-----l~~~D~lilpGG~~~~~--------  301 (451)
T PRK01077        246 VRIAVARDAA-----------FNFYYPENLELLRAAGAELVFFSPLADEA-----LPDCDGLYLGGGYPELF--------  301 (451)
T ss_pred             ceEEEEecCc-----------ccccHHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCEEEeCCCchhhH--------
Confidence            5788876541           12223667789999999998887533221     45789999999863221        


Q ss_pred             ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047         87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF  166 (350)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~  166 (350)
                                   .                                 ..+... ..+.+.++++.++|  +||+|||.|+
T Consensus       302 -------------~---------------------------------~~l~~~-~~~~~~i~~~~~~g--~~i~aiCgG~  332 (451)
T PRK01077        302 -------------A---------------------------------AELAAN-TSMRASIRAAAAAG--KPIYAECGGL  332 (451)
T ss_pred             -------------H---------------------------------HHHhhC-chhHHHHHHHHHcC--CCEEEEcHHH
Confidence                         0                                 001000 02567778888787  9999999999


Q ss_pred             HHHHHHhc
Q psy14047        167 QLLLYTSN  174 (350)
Q Consensus       167 QlLa~a~G  174 (350)
                      |+|+..+-
T Consensus       333 ~~L~~~i~  340 (451)
T PRK01077        333 MYLGESLE  340 (451)
T ss_pred             HHHHhhhc
Confidence            99999873

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=98.15  E-value=9.7e-06  Score=72.66  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=43.4

Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.+.+.++|+|++|| |++...+..|....  +.+.++++.++|  +|++|||.|+|++...
T Consensus        74 ~~~~l~~ad~I~l~G-G~~~~~~~~l~~~~--l~~~l~~~~~~g--~~i~G~SAGa~i~~~~  130 (212)
T cd03146          74 PLDALLEADVIYVGG-GNTFNLLAQWREHG--LDAILKAALERG--VVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHHHhcCCEEEECC-chHHHHHHHHHHcC--HHHHHHHHHHCC--CEEEEECHhHHhhCCC
Confidence            456777888888888 56555566666543  677777777777  9999999999999974

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>TIGR01001 metA homoserine O-succinyltransferase

Probab=98.13  E-value=1.2e-05  Score=74.20  Aligned_cols=139  Identities=16%  Similarity=0.097  Sum_probs=83.1

Q ss_pred             ccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        116 GQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       116 ~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                      ..+||+|++|-.--.   .+.+.|.+.. .+++|+++..     ...|.||.|.|.....+=|--.........| ..+.
T Consensus        98 ~~fDGlIITGAPvE~l~FeeV~YW~El~-~I~dwsk~~v-----~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfG-Vf~h  170 (300)
T TIGR01001        98 RKFDGLIITGAPVELVPFEDVAYWEELT-EIMEWSKHNV-----TSTMFICWAAQAGLKYFYGIPKYTLPEKLSG-VYKH  170 (300)
T ss_pred             CCCCEEEEcCCCcCCCCcccCCcHHHHH-HHHHHHHHcC-----cchHHHHHHHHHHHHHHcCCCccccCCceEE-eecC
Confidence            689999999954332   2234555443 6888888866     8999999999996665544211111112222 2232


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..+   ..++|++++.+.+.       .-.+.|. .+....+   .-.++++|+|.| ++.+   +..+..++.+-+=++
T Consensus       171 ~~~---~~~pL~rGfdd~f~-------~PhSR~t-~i~~~~i---~~~~~L~vla~s-~e~G---~~l~~s~d~r~vfi~  232 (300)
T TIGR01001       171 DIA---PDSLLLRGFDDFFL-------APHSRYA-DFDAEDI---DKVTDLEILAES-DEAG---VYLAANKDERNIFVT  232 (300)
T ss_pred             ccC---CCCccccCCCCccc-------cCCCCCC-CCCHHHH---hcCCCCeEEecC-CCcc---eEEEEcCCCCEEEEc
Confidence            211   45788888876542       1122222 2322211   223689999997 5566   556666666666699


Q ss_pred             ccCCcCC
Q psy14047        273 FHPEKNA  279 (350)
Q Consensus       273 fHPE~~~  279 (350)
                      .|||...
T Consensus       233 GH~EYd~  239 (300)
T TIGR01001       233 GHPEYDA  239 (300)
T ss_pred             CCCccCh
Confidence            9999764

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=98.10  E-value=7.3e-06  Score=80.78  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=59.2

Q ss_pred             ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhh
Q psy14047         28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQS  107 (350)
Q Consensus        28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (350)
                      .+|...+.++.|+++ +.++.++.-.+.+     +..+|+|+|+||...+.                             
T Consensus       244 F~FyY~enl~~L~~~-aelv~fSPl~~~~-----lp~~D~l~lpGG~~e~~-----------------------------  288 (433)
T PRK13896        244 FCFRYPATIERLRER-ADVVTFSPVAGDP-----LPDCDGVYLPGGYPELH-----------------------------  288 (433)
T ss_pred             cceeCHHHHHHHHhc-CcEEEEcCCCCCC-----CCCCCEEEeCCCchhhH-----------------------------
Confidence            455668899999999 9999988854432     45789999999873321                             


Q ss_pred             hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                                               ...+...  ..++.++++.++|  +||+|+|.|+|+|+..+
T Consensus       289 -------------------------~~~L~~n--~~~~~i~~~~~~G--~pi~aeCGG~q~L~~~i  325 (433)
T PRK13896        289 -------------------------ADALADS--PALDELADRAADG--LPVLGECGGLMALAESL  325 (433)
T ss_pred             -------------------------HHHHHhC--CcHHHHHHHHHCC--CcEEEEehHHHHhhccc
Confidence                                     0112111  1336677777788  99999999999999876

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=98.06  E-value=2.9e-06  Score=84.98  Aligned_cols=59  Identities=20%  Similarity=0.334  Sum_probs=45.0

Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                      +++.|.++|+||+||+.....+...+...  .+.+.++++.++|  .||+|||.|||+|...+
T Consensus       278 ~~~~l~~~d~lilpGg~~~~~~~~~l~~~--~~~~~i~~~~~~G--~pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       278 LDDSLTGCDAVIIPGSKSTIADLYALKQS--GFAEEILDFAKEG--GIVIGICGGYQMLGKEL  336 (475)
T ss_pred             CccccccCCEEEECCcchHHHHHHHHHhc--ChHHHHHHHHHcC--CcEEEEcHHHHHhhhhh
Confidence            34467799999999999765443322322  3677788888888  99999999999999875

>PRK00784 cobyric acid synthase; Provisional

Probab=98.03  E-value=4.9e-06  Score=83.78  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=44.3

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                      .+..+|+||+||++....+.......  .+.+.++++.++|  +||||||.|+|+|+..+
T Consensus       287 ~l~~~d~lilpGg~~~~~~~~~~~~~--~l~~~i~~~~~~g--~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        287 PLPDADLVILPGSKNTIADLAWLRES--GWDEAIRAHARRG--GPVLGICGGYQMLGRRI  342 (488)
T ss_pred             ccccCCEEEECCccchHHHHHHHHHc--CHHHHHHHHHHcC--CeEEEECHHHHHHhhhc
Confidence            56789999999999765533322222  3778888888888  99999999999999987

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=97.98  E-value=6.1e-05  Score=74.16  Aligned_cols=58  Identities=21%  Similarity=0.311  Sum_probs=44.9

Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                      .+.|.++|.||+||+.+...+...+++.+  +.+.++++..++  .||+|||-|||+|...+
T Consensus       285 ~~~l~~~dlvIlPGsk~t~~DL~~lr~~g--~d~~i~~~~~~~--~~viGICGG~QmLG~~i  342 (486)
T COG1492         285 GSDLRDADLVILPGSKNTIADLKILREGG--MDEKILEYARKG--GDVIGICGGYQMLGRRL  342 (486)
T ss_pred             CCCCCCCCEEEeCCCcccHHHHHHHHHcC--HHHHHHHHHhCC--CCEEEEcchHHhhhhhh
Confidence            35677799999999998766555555443  556677777666  89999999999999874

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.91  E-value=7.9e-06  Score=65.51  Aligned_cols=48  Identities=23%  Similarity=0.335  Sum_probs=37.9

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL  169 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlL  169 (350)
                      .++|.||+|| |+....+..+...  . .+.++++.++|  +|+||||+|.=+.
T Consensus        43 ~~ad~lVlPG-Ga~~~~~~~L~~~--g-~~~i~~~v~~g--~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPG-GADLPYCRALNGK--G-NRRIRNFVRNG--GNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECC-CChHHHHHHHHhh--C-cHHHHHHHHCC--CcEEEEecCccce
Confidence            5899999999 8877666666553  2 67788888777  9999999997665

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=97.57  E-value=0.00037  Score=63.20  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=25.3

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                      +.+.++++.++|  +|++|+|.|+-+++....
T Consensus       102 l~~~l~~~~~~G--~~~~G~SAGAii~~~~i~  131 (233)
T PRK05282        102 LLAPIREAVKNG--TPYIGWSAGANVAGPTIR  131 (233)
T ss_pred             cHHHHHHHHHCC--CEEEEECHHHHhhhccce
Confidence            777788888888  999999999988876544

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.48  E-value=0.00023  Score=54.73  Aligned_cols=25  Identities=44%  Similarity=0.781  Sum_probs=21.0

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLL  169 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlL  169 (350)
                      +.+++++...++  +|++|+|.|+|++
T Consensus        68 ~~~~i~~~~~~~--~~i~~~c~g~~~l   92 (115)
T cd01653          68 LLALLREAAAAG--KPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHHcC--CEEEEECchhHhH
Confidence            566777777665  9999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.24  E-value=0.00028  Score=51.80  Aligned_cols=49  Identities=31%  Similarity=0.619  Sum_probs=35.4

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL  169 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlL  169 (350)
                      ...+|+||+||++....... ..   ..+.+++.++.+++  +|++|+|.|+|++
T Consensus        44 ~~~~~~lii~g~~~~~~~~~-~~---~~~~~~~~~~~~~~--~~i~~~~~g~~~~   92 (92)
T cd03128          44 LDDYDGLILPGGPGTPDDLA-WD---EALLALLREAAAAG--KPVLGICLGAQLL   92 (92)
T ss_pred             cccCCEEEECCCCcchhhhc-cC---HHHHHHHHHHHHcC--CEEEEEecccccC
Confidence            45689999999887654332 11   13667777777666  9999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=97.11  E-value=0.0031  Score=56.32  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=35.0

Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.+.|.++|+|+++||.. ....+.|...  .+.+.+++...+|  .|+.|+|.|..++...
T Consensus        74 ~~~~l~~ad~I~~~GG~~-~~~~~~l~~t--~~~~~i~~~~~~G--~v~~G~SAGA~~~~~~  130 (210)
T cd03129          74 VVARLLEADGIFVGGGNQ-LRLLSVLRET--PLLDAILKRVARG--VVIGGTSAGAAVMGET  130 (210)
T ss_pred             HHHHHhhCCEEEEcCCcH-HHHHHHHHhC--ChHHHHHHHHHcC--CeEEEcCHHHHHhhhc
Confidence            344555555555555322 1112334332  2556666666677  9999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=97.05  E-value=0.00096  Score=59.72  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=41.3

Q ss_pred             hccCCEEEeCCCCCCcccchHHH------HHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYA------KAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~------~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                      +++||+|++|||.........|.      +....+.++++++.++|  +||.+||.|-++|+.+.+
T Consensus        80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~g--K~VaAIChgp~~L~~~~~  143 (213)
T cd03133          80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAG--KPIGAICIAPALAAKILG  143 (213)
T ss_pred             HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCC--CeEEEECHHHHHHHHHhc
Confidence            56899999999955321111111      01124788889999888  999999999999998754

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=96.95  E-value=0.0014  Score=58.96  Aligned_cols=57  Identities=16%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             hccCCEEEeCCCCCCcccchHH------HHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        115 LGQVNGVLIPGGGASFYADDGY------AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~------~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                      .++||+|++|||.........+      .+....+.++++++.++|  +||.+||.|-++|+.++
T Consensus        83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~g--K~vaAIChgp~iL~~~~  145 (217)
T PRK11780         83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAG--KPIGFICIAPAMLPKIL  145 (217)
T ss_pred             hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHHh
Confidence            5689999999995432101010      011124778889999888  99999999999998875

>KOG1907|consensus

Probab=96.89  E-value=0.0091  Score=62.28  Aligned_cols=57  Identities=23%  Similarity=0.272  Sum_probs=37.7

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG   74 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~   74 (350)
                      .+|.++|+--...   ++         ......++.++|..++-+..+.-.. =+.-|+++.||.++||-
T Consensus      1057 ~~PkVAilREeGv---Ng---------~rEMa~af~~AgF~~~DVtmtDlL~-G~~~ld~frGlaf~GGF 1113 (1320)
T KOG1907|consen 1057 TAPKVAILREEGV---NG---------DREMAAAFYAAGFETVDVTMTDLLA-GRHHLDDFRGLAFCGGF 1113 (1320)
T ss_pred             CCCceEEeecccc---cc---------HHHHHHHHHHcCCceeeeeeehhhc-CceeHhHhcceeeecCc
Confidence            3788888865432   22         1556678899999988776542111 02247888999999986

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=96.80  E-value=0.0046  Score=55.75  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=80.3

Q ss_pred             ccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCcccc-CCccCceeeeee
Q psy14047        116 GQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL-RTRCDCFYENLA  191 (350)
Q Consensus       116 ~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~-~~~~~~~~~~~~  191 (350)
                      .++||+|++|-..-.   .+-+.|.... .+++|.+..+     .-.|=||.|.|.--..+=|--.. +.. ...+ ..+
T Consensus        98 ~~FDG~IiTGAPve~l~feeV~YW~el~-~I~eWskt~V-----~STl~ICWgaqAaly~~yGv~K~~l~~-Kl~G-Vy~  169 (307)
T COG1897          98 QKFDGLIITGAPVELLPFEEVAYWEELK-QIFEWSKTHV-----TSTLHICWGAQAALYYFYGVPKYTLPE-KLSG-VYK  169 (307)
T ss_pred             cccCceEEeCCcccccCchhhhhHHHHH-HHHHHHhhcc-----hhhhhhHHHHHHHHHHHcCCCccccch-hhhc-eee
Confidence            479999999954322   2234555442 6788888766     66799999999988877663111 111 1111 122


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      ..  .....+.++.++.+.+.       .-.+.|.+ +....+   .--++++||+.| +..+   +..+..++.+-.=+
T Consensus       170 h~--~l~p~~~l~rGfdd~f~-------~PhSR~t~-~~~e~i---~~~~~LeIL~es-~e~G---~~l~a~k~~r~ifv  232 (307)
T COG1897         170 HD--ILSPHSLLTRGFDDSFL-------APHSRYTD-VPKEDI---LAVPDLEILAES-KEAG---VYLLASKDGRNIFV  232 (307)
T ss_pred             cc--ccCccchhhccCCcccc-------Cccccccc-CCHHHH---hhCCCceeeecc-cccc---eEEEecCCCCeEEE
Confidence            11  12345677877776542       11222221 221111   112469999998 5555   55666666666667


Q ss_pred             cccCCcCCc
Q psy14047        272 QFHPEKNAY  280 (350)
Q Consensus       272 QfHPE~~~~  280 (350)
                      -.|||....
T Consensus       233 ~gH~EYD~~  241 (307)
T COG1897         233 TGHPEYDAT  241 (307)
T ss_pred             eCCcchhhh
Confidence            889997643

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=96.69  E-value=0.0025  Score=55.37  Aligned_cols=50  Identities=30%  Similarity=0.555  Sum_probs=36.9

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|+|++|||.....    +.. ...+.++++++.+++  +||.|||.|.++|+.+
T Consensus        75 ~~~D~liv~GG~~~~~----~~~-~~~~~~~l~~~~~~~--k~i~~ic~G~~~La~a  124 (180)
T cd03169          75 DDYDALVIPGGRAPEY----LRL-DEKVLAIVRHFAEAN--KPVAAICHGPQILAAA  124 (180)
T ss_pred             hHCCEEEEcCCCChhh----hcc-CHHHHHHHHHHHHcC--CEEEEECcHHHHHHHc
Confidence            3689999999854321    110 013677888888777  9999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=96.65  E-value=0.0026  Score=57.76  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..++||+|++|||.....+...  .  ..+.++++++.++|  +||-.||.|-++|..+
T Consensus        91 ~~~dYDav~iPGG~g~~~dl~~--~--~~l~~ll~~f~~~g--K~iaAIChgp~~L~~a  143 (231)
T cd03147          91 NPDDYGIFFVAGGHGTLFDFPH--A--TNLQKIAQQIYANG--GVVAAVCHGPAILANL  143 (231)
T ss_pred             CHhhCcEEEECCCCchhhhccc--C--HHHHHHHHHHHHcC--CEEEEEChHHHHHHhh
Confidence            3578999999999543221111  1  13678888888887  9999999999999876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.58  E-value=0.076  Score=51.34  Aligned_cols=51  Identities=22%  Similarity=0.293  Sum_probs=35.0

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY  171 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~  171 (350)
                      ...++.+|+|||....+. ..+..   .-.+.|++++++|  .--||||.|.-.-..
T Consensus        47 ~~~~~LlV~PGG~d~~y~-~~l~~---~g~~~Ir~fV~~G--G~YlGiCAGaY~as~   97 (367)
T PF09825_consen   47 QSKCALLVMPGGADLPYC-RSLNG---EGNRRIRQFVENG--GGYLGICAGAYYASS   97 (367)
T ss_pred             ccCCcEEEECCCcchHHH-HhhCh---HHHHHHHHHHHcC--CcEEEECcchhhhcc
Confidence            357899999997653221 12211   2357789999998  899999999665543

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=96.58  E-value=0.003  Score=55.23  Aligned_cols=51  Identities=24%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             hccCCEEEeCCC-CCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGG-GASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~-g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+.||+|++||| ..+...... .    .+.++++++.++|  +||..||.|-++|+.+
T Consensus        64 ~~~ydal~ipGG~~~~~~~~~~-~----~~~~~v~~~~~~~--k~vaaIC~g~~~L~~a  115 (188)
T COG0693          64 AADYDALVIPGGDHGPEYLRPD-P----DLLAFVRDFYANG--KPVAAICHGPAVLAAA  115 (188)
T ss_pred             HhHCCEEEECCCccchhhccCc-H----HHHHHHHHHHHcC--CEEEEEChhHHHHhcc
Confidence            468999999999 554332222 1    4789999999888  9999999999999976

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=96.53  E-value=0.0037  Score=53.33  Aligned_cols=50  Identities=30%  Similarity=0.499  Sum_probs=36.7

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|+|++||+....    .+.. ...+.++++++.+++  +||.|||.|.++|+.+
T Consensus        59 ~~~D~vvv~Gg~~~~----~~~~-~~~l~~~l~~~~~~~--~~i~~ic~G~~~La~a  108 (166)
T TIGR01382        59 EEYDALVIPGGRAPE----YLRL-NNKAVRLVREFVEKG--KPVAAICHGPQLLISA  108 (166)
T ss_pred             HHCcEEEECCCCCHH----Hhcc-CHHHHHHHHHHHHcC--CEEEEEChHHHHHHhc
Confidence            368999999975421    1111 013778888888777  9999999999999975

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=96.42  E-value=0.0046  Score=52.67  Aligned_cols=50  Identities=22%  Similarity=0.418  Sum_probs=37.0

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|+|++||+....    .+.. ...+.++++++.+++  +||.|||.|.++|+.+
T Consensus        61 ~~~D~lvvpGG~~~~----~~~~-~~~~~~~l~~~~~~~--~~i~~ic~G~~~La~a  110 (165)
T cd03134          61 DDYDALVIPGGTNPD----KLRR-DPDAVAFVRAFAEAG--KPVAAICHGPWVLISA  110 (165)
T ss_pred             HHCCEEEECCCCChh----hhcc-CHHHHHHHHHHHHcC--CeEEEEchHHHHHHhc
Confidence            368999999986321    1111 013778888888887  9999999999999875

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=96.36  E-value=0.0023  Score=53.75  Aligned_cols=52  Identities=27%  Similarity=0.494  Sum_probs=36.5

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..||+||+|||....   ..+......+.++++++.+++  +||.+||.|-.+|+.+
T Consensus        36 ~~yDalilpGG~~~~---~~l~~~~~~l~~~~~~~~~~~--k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   36 SDYDALILPGGHGGA---DDLRTDSKDLLELLKEFYEAG--KPIAAICHGPAVLAAA   87 (147)
T ss_dssp             GGESEEEEE-BTHHH---HHHTTCHHHHHHHHHHHHHTT---EEEEETTCHHHHHHT
T ss_pred             hhCCEEEECCCCchh---hhHhhHHHHHHHHHHHHHHcC--CeEEecCCCcchhhcc
Confidence            469999999986532   122200124788899998887  9999999999888876

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=96.36  E-value=0.011  Score=52.16  Aligned_cols=39  Identities=28%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             HHHHHHHhhCCCCccEEEehHHHHHHHHHh----cCccccCCccC
Q psy14047        144 YKIAKEFNENRDYFPIMGICLGFQLLLYTS----NNENELRTRCD  184 (350)
Q Consensus       144 ~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~----Gg~v~~~~~~~  184 (350)
                      .+.+++++++|  +|+|.||.|+|+|...+    |-++.++...+
T Consensus        77 ~~~l~~~i~~g--~p~laiCgg~QlLG~yY~~a~G~ri~GlGiLd  119 (250)
T COG3442          77 KEGLKDAIENG--KPVLAICGGYQLLGQYYETASGTRIDGLGILD  119 (250)
T ss_pred             cHHHHHHHhcC--CcEEEEccchhhccceeecCCCcEeeccccee
Confidence            34567777777  99999999999999754    44455444443

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=96.31  E-value=0.005  Score=55.50  Aligned_cols=52  Identities=23%  Similarity=0.435  Sum_probs=38.8

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ++.||+|++||+.........-.    .+.++++++.+++  ++|.+||.|-.+|+.+
T Consensus        88 ~~~~dal~ipGG~~~~~~l~~~~----~l~~~l~~~~~~~--k~iaaIC~g~~~La~a  139 (221)
T cd03141          88 PSDYDAIFIPGGHGPMFDLPDNP----DLQDLLREFYENG--KVVAAVCHGPAALLNV  139 (221)
T ss_pred             HhHceEEEECCCcccccccccCH----HHHHHHHHHHHcC--CEEEEEcchHHHHHhc
Confidence            46799999999754322111111    3778888888887  9999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=96.16  E-value=0.01  Score=51.04  Aligned_cols=49  Identities=14%  Similarity=0.238  Sum_probs=37.5

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|.|++||+.......+  .    .+.++++++.+++  ++|.+||-|.++|+.+
T Consensus        59 ~~~D~l~I~Gg~~~~~~~~--~----~l~~~l~~~~~~~--~~i~aic~G~~~La~a  107 (170)
T cd03140          59 EDYDLLILPGGDSWDNPEA--P----DLAGLVRQALKQG--KPVAAICGATLALARA  107 (170)
T ss_pred             hHccEEEEcCCcccccCCc--H----HHHHHHHHHHHcC--CEEEEEChHHHHHHHC
Confidence            4689999999864322111  1    3678888888877  9999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.14  E-value=0.017  Score=48.91  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=56.1

Q ss_pred             HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ..+.+++++.|..+..|.... +.+...+.+...|+|+|+||...-                    .             
T Consensus         3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~--------------------l-------------   49 (154)
T PF03575_consen    3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFR--------------------L-------------   49 (154)
T ss_dssp             HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHH--------------------H-------------
T ss_pred             HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHH--------------------H-------------
Confidence            467889999999988888876 455677778899999999996321                    0             


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL  169 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlL  169 (350)
                                           ...|..+  .+.+.+++..++|  .++.|+-.|.-++
T Consensus        50 ---------------------~~~l~~t--~l~~~i~~~~~~G--~vi~G~SAGA~i~   82 (154)
T PF03575_consen   50 ---------------------LRQLKET--GLDEAIREAYRKG--GVIIGTSAGAMIL   82 (154)
T ss_dssp             ---------------------HHHHHHT--THHHHHHHHHHTT--SEEEEETHHHHCT
T ss_pred             ---------------------HHHHHhC--CHHHHHHHHHHCC--CEEEEEChHHhhc
Confidence                                 2234433  3777888888888  9999999998553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=95.98  E-value=0.013  Score=51.41  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..++|.|++||++..... +.+.. ...+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        67 ~~~~D~liIpgg~~~~~~-~~~~~-~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a  120 (195)
T cd03138          67 VPAPDLVIVPGLGGDPDE-LLLAD-NPALIAWLRRQHANG--ATVAAACTGVFLLAEA  120 (195)
T ss_pred             cCCCCEEEECCCcCCchh-hhhhc-cHHHHHHHHHHHHcC--CEEEEecHHHHHHHHc
Confidence            457999999997653210 01111 124788889888887  9999999999999975

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=95.93  E-value=0.011  Score=53.77  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=38.3

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .++||+|++|||.....   .+... ..+.+.++++.++|  +||-.||.|-++|..+
T Consensus        94 ~~dYDav~iPGG~g~~~---dl~~~-~~l~~ll~~f~~~g--K~VaAICHGp~~L~~a  145 (232)
T cd03148          94 DSEYAAVFIPGGHGALI---GIPES-QDVAAALQWAIKND--RFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhhceEEEECCCCCChh---hcccC-HHHHHHHHHHHHcC--CEEEEECcHHHHHHhc
Confidence            56899999999854422   22111 13677888888888  9999999999877754

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=95.89  E-value=0.018  Score=50.15  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=38.8

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+..+|.|++||+....... ..    ..+.++++++.+++  ++|.+||-|..+|+.+
T Consensus        61 ~~~~~D~liipGg~~~~~~~-~~----~~l~~~l~~~~~~~--~~i~aic~g~~~La~a  112 (187)
T cd03137          61 ALAAADTVIVPGGPDVDGRP-PP----PALLAALRRAAARG--ARVASVCTGAFVLAEA  112 (187)
T ss_pred             ccCCCCEEEECCCccccccc-CC----HHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence            35678999999975543111 11    14778888888777  9999999999999986

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=95.89  E-value=0.01  Score=49.28  Aligned_cols=50  Identities=22%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+|+||+||+.....   .+.. ...+.++++++.+++  +||.+||-|-.+|+.+
T Consensus        62 ~~D~liVpGg~~~~~---~~~~-~~~l~~~l~~~~~~~--~~I~aic~G~~~La~a  111 (142)
T cd03132          62 LFDAVVVPGGAEAAF---ALAP-SGRALHFVTEAFKHG--KPIGAVGEGSDLLEAA  111 (142)
T ss_pred             hcCEEEECCCccCHH---HHcc-ChHHHHHHHHHHhcC--CeEEEcCchHHHHHHc
Confidence            589999999754321   1111 114778888888777  9999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=95.82  E-value=0.013  Score=49.57  Aligned_cols=51  Identities=27%  Similarity=0.432  Sum_probs=37.5

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|.|++||+....   ..+.. ...+.++++++.+++  ++|.+||-|..+|+.+
T Consensus        59 ~~~D~liipGg~~~~---~~~~~-~~~l~~~l~~~~~~~--~~i~~ic~g~~~La~a  109 (163)
T cd03135          59 DDYDAIVIPGGLPGA---QNLAD-NEKLIKLLKEFNAKG--KLIAAICAAPAVLAKA  109 (163)
T ss_pred             CCCCEEEECCCCchH---HHHHh-CHHHHHHHHHHHHcC--CEEEEEchhHHHHHHc
Confidence            579999999975211   11111 124788888888877  9999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PRK04155 chaperone protein HchA; Provisional

Probab=95.80  E-value=0.013  Score=54.88  Aligned_cols=52  Identities=23%  Similarity=0.261  Sum_probs=37.9

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+.||+|++|||...   +..+... ..+.++++++.+++  +||..||.|-++|..+
T Consensus       145 ~~dYDaV~iPGG~g~---~~dL~~~-~~l~~ll~~~~~~~--K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        145 DSDYAAVFIPGGHGA---LIGLPES-EDVAAALQWALDND--RFIITLCHGPAALLAA  196 (287)
T ss_pred             cccccEEEECCCCch---HHHHhhC-HHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence            468999999998543   2223221 14677788888887  9999999999877764

>TIGR01383 not_thiJ DJ-1 family protein

Probab=95.63  E-value=0.015  Score=50.15  Aligned_cols=52  Identities=19%  Similarity=0.402  Sum_probs=37.7

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.|++||+....   ..+.. ...+.++++++.+++  ++|.+||-|..+|+.+
T Consensus        61 ~~~~D~l~v~Gg~~~~---~~~~~-~~~l~~~l~~~~~~~--~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        61 LEEFDAIVLPGGMPGA---ENLRN-SKLLLNILKKQESKG--KLVAAICAAPAVLLAA  112 (179)
T ss_pred             cccCCEEEECCCchHH---HHHhh-CHHHHHHHHHHHHCC--CEEEEEChhHHHHHhc
Confidence            4578999999874211   11111 114788888888877  9999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=95.62  E-value=0.022  Score=50.02  Aligned_cols=50  Identities=16%  Similarity=0.397  Sum_probs=35.4

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY  171 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~  171 (350)
                      +.+|.|++||+.....   .+... ..+.++++++.++|  ++|.+||.|-.+|..
T Consensus        65 ~~~D~l~ipGG~~~~~---~~~~~-~~l~~~L~~~~~~g--~~v~aic~G~~~ll~  114 (196)
T PRK11574         65 GDFDVIVLPGGIKGAE---CFRDS-PLLVETVRQFHRSG--RIVAAICAAPATVLV  114 (196)
T ss_pred             CCCCEEEECCCCchhh---hhhhC-HHHHHHHHHHHHCC--CEEEEECHhHHHHHH
Confidence            4689999999743211   11110 13788889988888  999999999987553

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=95.55  E-value=0.022  Score=55.65  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=62.0

Q ss_pred             ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhc-ccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhh
Q psy14047         28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQ  106 (350)
Q Consensus        28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~-~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (350)
                      ..|--....+.|+++|+.++..+.-.+.+     +. .+|+|+|+||..-+.                     -      
T Consensus       256 F~FyY~~nl~~Lr~~GAelv~FSPL~D~~-----lP~~~D~vYlgGGYPElf---------------------A------  303 (451)
T COG1797         256 FNFYYPENLELLREAGAELVFFSPLADEE-----LPPDVDAVYLGGGYPELF---------------------A------  303 (451)
T ss_pred             hccccHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCCEEEeCCCChHHH---------------------H------
Confidence            44555889999999999999998877643     34 599999999973322                     1      


Q ss_pred             hhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        107 SLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       107 ~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                                                 +.+... ..+.+.++++.+.|  +||+|=|-|+--|...+
T Consensus       304 ---------------------------~~L~~n-~~~~~~i~~~~~~G--~piyaECGGlMYL~~~l  340 (451)
T COG1797         304 ---------------------------EELSAN-ESMRRAIKAFAAAG--KPIYAECGGLMYLGESL  340 (451)
T ss_pred             ---------------------------HHHhhC-HHHHHHHHHHHHcC--CceEEecccceeehhhe
Confidence                                       112111 13567788888888  99999999998888765

>TIGR02069 cyanophycinase cyanophycinase

Probab=95.53  E-value=0.058  Score=49.56  Aligned_cols=28  Identities=11%  Similarity=0.090  Sum_probs=23.1

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.+.++++.++|  .|+.|+-.|.-+|+..
T Consensus       105 l~~~l~~~~~~G--~vi~G~SAGA~i~~~~  132 (250)
T TIGR02069       105 LLDRLRKRVHEG--IILGGTSAGAAVMSDT  132 (250)
T ss_pred             HHHHHHHHHHcC--CeEEEccHHHHhcccc
Confidence            666777788888  9999999999888644

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=95.36  E-value=0.051  Score=48.12  Aligned_cols=76  Identities=20%  Similarity=0.303  Sum_probs=55.7

Q ss_pred             HHHHHHHcCCeEEEEecCCC-HHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHH
Q psy14047         35 YVKAVEASGARVAPIFIGNP-EAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEK  113 (350)
Q Consensus        35 yv~~l~~~G~~~v~i~~~~~-~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (350)
                      ..++++..|..+.-|+...+ .+.++.+|...|+|++.||.. .+                   .               
T Consensus        54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNT-F~-------------------L---------------   98 (224)
T COG3340          54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNT-FN-------------------L---------------   98 (224)
T ss_pred             HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchH-HH-------------------H---------------
Confidence            34677788888888887544 567788888888888888873 11                   0               


Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL  168 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql  168 (350)
                                         ...|.+++  +.+.++++.++|  +|.+|+-.|.-+
T Consensus        99 -------------------L~~lke~g--ld~iIr~~vk~G--~~YiG~SAGA~i  130 (224)
T COG3340          99 -------------------LQELKETG--LDDIIRERVKAG--TPYIGWSAGANI  130 (224)
T ss_pred             -------------------HHHHHHhC--cHHHHHHHHHcC--CceEEeccCcee
Confidence                               22344443  888999999999  999999988543

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=95.29  E-value=0.095  Score=47.06  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ++.+.+.++|+|++.|+..... .+.|..+  .+.+.+++..++|  .|+.|+-.|.-++...
T Consensus        76 ~~~~~l~~ad~I~~~GG~~~~~-~~~l~~t--~l~~~l~~~~~~G--~v~~G~SAGA~i~~~~  133 (217)
T cd03145          76 EVVARLRDADGIFFTGGDQLRI-TSALGGT--PLLDALRKVYRGG--VVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HHHHHHHhCCEEEEeCCcHHHH-HHHHcCC--hHHHHHHHHHHcC--CEEEEccHHHHhhhhc
Confidence            4455666777777766543221 2333332  3667778877788  9999999999998764

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=95.09  E-value=0.14  Score=53.76  Aligned_cols=50  Identities=20%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+|+|++||+....   ..+... ..++++++++.+.+  ++|.+||-|.++|+.+
T Consensus       658 ~FDAVvVPGG~~~~---~~L~~d-~~al~fL~eaykHg--K~IAAiCaG~~LLaaA  707 (752)
T PRK11249        658 TFDAVIVPGGKANI---ADLADN-GDARYYLLEAYKHL--KPIALAGDARKLKAAL  707 (752)
T ss_pred             CCCEEEECCCchhH---HHHhhC-HHHHHHHHHHHHcC--CEEEEeCccHHHHHhc
Confidence            58999999974322   122111 14788899988887  9999999999999974

>KOG2764|consensus

Probab=94.69  E-value=0.049  Score=48.62  Aligned_cols=52  Identities=19%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                      +.||.||||||.....   .+... ..+.+.++++.+.|  ++|..||.| |+++.+.+
T Consensus        66 ~~yDviilPGG~~g~e---~L~~~-~~v~~lvK~q~~~g--kLIaaICaa-p~~al~a~  117 (247)
T KOG2764|consen   66 SKYDVIILPGGLPGAE---TLSEC-EKVVDLVKEQAESG--KLIAAICAA-PLTALAAH  117 (247)
T ss_pred             ccccEEEecCCchhhh---hhhhc-HHHHHHHHHHHhcC--CeEEEeecc-hHHHHhhc
Confidence            7899999999854332   22211 13667788888777  999999999 44444433

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=94.50  E-value=0.079  Score=45.98  Aligned_cols=50  Identities=14%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.||+||+.....  ..-    ..++++++++.+++  +.|.+||-|..+|+.+
T Consensus        62 ~~~~D~liipgg~~~~~--~~~----~~~~~~l~~~~~~~--~~i~aic~g~~~La~a  111 (185)
T cd03136          62 APPLDYLFVVGGLGARR--AVT----PALLAWLRRAARRG--VALGGIDTGAFLLARA  111 (185)
T ss_pred             cCCCCEEEEeCCCCccc--cCC----HHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence            45789999998744321  111    14778888888777  9999999999999974

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=94.33  E-value=0.069  Score=46.08  Aligned_cols=51  Identities=18%  Similarity=0.343  Sum_probs=37.0

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|+||+||+.....    +.. ...+.++++++.+++  ++|.++|.|.-+|+.+
T Consensus        60 ~~~~D~lvipgg~~~~~----~~~-~~~~~~~l~~~~~~~--k~i~aic~g~~~La~a  110 (183)
T cd03139          60 PPDLDVLLVPGGGGTRA----LVN-DPALLDFIRRQAARA--KYVTSVCTGALLLAAA  110 (183)
T ss_pred             CCCCCEEEECCCcchhh----hcc-CHHHHHHHHHhcccC--CEEEEEchHHHHHHhc
Confidence            34689999999753221    110 014778888888777  9999999999888875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=94.17  E-value=0.091  Score=49.96  Aligned_cols=50  Identities=16%  Similarity=0.253  Sum_probs=37.8

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+.+|.||+||+..... .  ..   ..+.++++++.+++  ++|.|||-|.-+|+.+
T Consensus        73 ~~~~D~livpGg~~~~~-~--~~---~~l~~~l~~~~~~~--~~i~aic~g~~~La~a  122 (322)
T PRK09393         73 LDRADTIVIPGWRGPDA-P--VP---EPLLEALRAAHARG--ARLCSICSGVFVLAAA  122 (322)
T ss_pred             cCCCCEEEECCCCcccc-c--CC---HHHHHHHHHHHHcC--CEEEEEcHHHHHHHhc
Confidence            56789999999754321 1  11   14788898888877  8999999999998876

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=93.73  E-value=0.091  Score=44.72  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=36.9

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.||+||+.....   ....  ..+.+++++..+++  .+|.|||-|..+|+.+
T Consensus        59 ~~~~D~lvvpg~~~~~~---~~~~--~~l~~~l~~~~~~~--~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   59 APDFDILVVPGGPGFDA---AAKD--PALLDWLRQQHAQG--TYIAAICTGALLLAEA  109 (166)
T ss_dssp             CSCCSEEEEE-STTHHH---HTT---HHHHHHHHHHHCCT--SEEEEETTHHHHHHHT
T ss_pred             cccCCEEEeCCCCCchh---cccC--HHHHHHhhhhhccc--eEEeeeehHHHHHhhh
Confidence            56789999999876111   1111  14778888877777  9999999999999986

...

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.66  E-value=0.63  Score=37.84  Aligned_cols=54  Identities=20%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE  176 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~  176 (350)
                      +.+.++|.|++-||=+.    ..+..    -.+.+++..++...+|++|+|+  |-|....|-.
T Consensus        81 e~~n~aDvvVLlGGLaM----P~~gv----~~d~~kel~ee~~~kkliGvCf--m~mF~ragW~  134 (154)
T COG4090          81 EELNSADVVVLLGGLAM----PKIGV----TPDDAKELLEELGNKKLIGVCF--MNMFERAGWD  134 (154)
T ss_pred             cccccccEEEEEccccc----CcCCC----CHHHHHHHHHhcCCCceEEeeH--HHHHHHcCcc
Confidence            45678999999776442    21111    1233444444445689999994  5566554543

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=80.80  E-value=2  Score=38.28  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=28.1

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA   75 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~   75 (350)
                      .+++++|++.|+++ .+.+..+.++    ++.+|||||||++.
T Consensus        15 ~s~~~al~~~g~~~-~v~~~~~~~~----l~~~d~lIlpG~~~   52 (209)
T PRK13146         15 RSAAKALERAGAGA-DVVVTADPDA----VAAADRVVLPGVGA   52 (209)
T ss_pred             HHHHHHHHHcCCCc-cEEEECCHHH----hcCCCEEEECCCCc
Confidence            78889999999954 3333344433    58899999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
1l9x_A	315	Structure Of Gamma-Glutamyl Hydrolase Length = 315		9e-37

>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase Length = 315

Iteration: 1
 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 167/349 (47%), Gaps = 61/349 (17%)
Query: 2   EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61
           +  ++PIIGIL Q+    V K++  +  YI ASYVK +E+                    
Sbjct: 26  DTAKKPIIGILMQKCRNKVMKNYGRY--YIAASYVKYLES-------------------- 63
Query: 62  LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
                                   AGA +  +  +++ ++ +I         +   +NG+
Sbjct: 64  ------------------------AGARVVPVRLDLTEKDYEI---------LFKSINGI 90
Query: 122 LIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT 181
           L PGG       D YAK   + Y ++ +  ++ DYFP+ G CLGF+ L    + E  L T
Sbjct: 91  LFPGGSVDLRRSD-YAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLT 148
Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLA 240
             D     + L F      S ++   P  +L  LA   +T N+H W ++  NFT N  L 
Sbjct: 149 ATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLK 208
Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
           K + VL+TN++ + ++FIS++E   YP  G+Q+HPEK  YEWK      H   A++ A Y
Sbjct: 209 KFFNVLTTNTDGK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFY 267
Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             ++ V++A  ++H F++E EE+ ALIY + P YT  I    + Q Y+F
Sbjct: 268 LAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS--SFQQCYIF 314

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	2e-68
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	8e-04

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315

 Score =  216 bits (551), Expect = 2e-68
 Identities = 107/349 (30%), Positives = 162/349 (46%), Gaps = 61/349 (17%)

Query: 2   EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61
           +  ++PIIGIL Q+    V K++     YI ASYVK +E++GARV P+ +   E      
Sbjct: 26  DTAKKPIIGILMQKCRNKVMKNYGR--YYIAASYVKYLESAGARVVPVRLDLTEK----- 78

Query: 62  LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
                                                             E +   +NG+
Sbjct: 79  ------------------------------------------------DYEILFKSINGI 90

Query: 122 LIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT 181
           L PGG         YAK   + Y ++ +  ++ DYFP+ G CLGF+ L    + E  L T
Sbjct: 91  LFPGGSVDLR-RSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLT 148

Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG-LA 240
             D     + L F      S ++   P  +L  LA   +T N+H W ++  NFT N  L 
Sbjct: 149 ATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLK 208

Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
           K + VL+TN++   ++FIS++E   YP  G+Q+HPEK  YEWK      H   A++ A Y
Sbjct: 209 KFFNVLTTNTDG-KIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFY 267

Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
             ++ V++A  ++H F++E EE+ ALIY + P YT  I    + Q Y+F
Sbjct: 268 LAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS--SFQQCYIF 314

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 30/182 (16%), Positives = 50/182 (27%), Gaps = 78/182 (42%)

Query: 4   TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG 63
           + +P+IGI       GVD  +    +Y    YV A++  G                    
Sbjct: 2   SLKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFP----------------- 44

Query: 64  QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLI 123
               + +P    S                                    + +  V+G+L+
Sbjct: 45  ----IALPIDDPS---------------------------------TAVQAISLVDGLLL 67

Query: 124 PGGG---ASFYADDGYAKAGAMIYKIAKEFNENRDYF-------------PIMGICLGFQ 167
            GG       Y ++   + G         +   RD +             PI  IC G Q
Sbjct: 68  TGGQDITPQLYLEEPSQEIG--------AYFPPRDSYEIALVRAALDAGKPIFAICRGMQ 119

Query: 168 LL 169
           L+
Sbjct: 120 LV 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 30/211 (14%), Positives = 60/211 (28%), Gaps = 67/211 (31%)

Query: 141 AMIYKIAKEFNENRDYFP---------IMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191
           ++I +  ++     D +          I+   L             E R      ++ L+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYRKM----FDRLS 379

Query: 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSN--------FTDNGLAKEW 243
           +     F  S   +  P  +L  +           W     +             L ++ 
Sbjct: 380 V-----FPPS---AHIPTILLSLI-----------WFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 244 KVLSTNS-NNRGLKFISSVEHKVYPFAGIQFHPEK--NAYEWKLTQDNPHTRIAIENARY 300
              ST S  +  L+    +E++         H     + Y    T D+    I     +Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEY------ALH-RSIVDHYNIPKTFDS-DDLIPPYLDQY 472

Query: 301 FFDWLVSQASGSHHSFETEEEEKAAL---IY 328
           F+  +       HH    E  E+  L   ++
Sbjct: 473 FYSHIG------HHLKNIEHPERMTLFRMVF 497

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Length = 227

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 28/194 (14%)

Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174
           LG  +G++IPGG ++        +   +   +    +  +   PI G C G  LL     
Sbjct: 41  LGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLK--KPIWGTCAGCILLSKNVE 98

Query: 175 NENELRTRCDCFY---ENLALEFMPSFRQSL-LYSRAPIHVLQELATSHITHNWHMWCIT 230
           N        + F     ++ +       Q+        I                +    
Sbjct: 99  NIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFK-KDLTAACIRAPY 157

Query: 231 PSNFTDNGLAKEWKVLSTNSNN-RGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNP 289
                   L+ E KVL+T S+   G   I++VE       G  FHPE       L     
Sbjct: 158 IREI----LSDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPE-------LLPH-- 202

Query: 290 HTRIAIENARYFFD 303
            T       +YF++
Sbjct: 203 -TAF----QQYFYE 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	100.0
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	100.0
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.95
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.95
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.95
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.95
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.94
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.94
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.93
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.93
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.92
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.92
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.92
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.92
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.92
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.92
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.91
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.91
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.9
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.9
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.89
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.89
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.89
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.89
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.89
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.88
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.87
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.86
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.85
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.85
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.83
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.83
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.83
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.74
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.68
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.19
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	98.63
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	98.44
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	97.37
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	97.18
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	96.94
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	96.91
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	96.87
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	96.77
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	96.69
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	96.65
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	96.59
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	96.52
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	96.51
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	96.31
2fex_A	188	Conserved hypothetical protein; structural genomic	96.3
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	96.29
3er6_A	209	Putative transcriptional regulator protein; struct	96.29
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	96.22
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	96.21
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	96.17
3gra_A	202	Transcriptional regulator, ARAC family; transcript	96.15
1u9c_A	224	APC35852; structural genomics, protein structure i	96.0
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	95.64
3n7t_A	247	Macrophage binding protein; seattle structural gen	95.47
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	95.44
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	95.33
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	95.31
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	94.99
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	94.84
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	94.76
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	94.75
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	94.4
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	94.26
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	94.05
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	92.98
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	90.56
3pzy_A	164	MOG; ssgcid, seattle structural genomics center fo	88.63

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=100.00  E-value=7.1e-52  Score=390.90  Aligned_cols=287  Identities=36%  Similarity=0.654  Sum_probs=227.5

Q ss_pred             CCCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047          3 ATERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD   81 (350)
Q Consensus         3 ~~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~   81 (350)
                      .+.||+|||++.....   ..+... .+|+.++|+++|+++|+.+++++...+.+.+.++++.+||||||||+.|++|. 
T Consensus        27 ~~~~P~IGI~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~-  102 (315)
T 1l9x_A           27 TAKKPIIGILMQKCRN---KVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRS-  102 (315)
T ss_dssp             -CCCCEEEEECEECCS---HHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTC-
T ss_pred             cCCCCEEEEECCcccc---cccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChh-
Confidence            4678999999976431   101122 67899999999999999999999988777888888999999999998787632 


Q ss_pred             cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEE
Q psy14047         82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMG  161 (350)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlG  161 (350)
                                      .|.+                                  +.   ..+++.++++.++|+++||||
T Consensus       103 ----------------~~~~----------------------------------~~---~~l~~~~~~~~~~g~~~PiLG  129 (315)
T 1l9x_A          103 ----------------DYAK----------------------------------VA---KIFYNLSIQSFDDGDYFPVWG  129 (315)
T ss_dssp             ----------------HHHH----------------------------------HH---HHHHHHHHHHHHTTCCCCEEE
T ss_pred             ----------------hhhH----------------------------------HH---HHHHHHHHHHHhcCCCceEEE
Confidence                            1211                                  11   136777888776653499999


Q ss_pred             ehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccc-ccc
Q psy14047        162 ICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLA  240 (350)
Q Consensus       162 IC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~-~L~  240 (350)
                      ||+|||+|+.++||++. +...+..+...|++.+.....+.||+.++..+...++....++++|+++|.++.+..+ .+|
T Consensus       130 IC~G~Qll~~a~GG~~~-~~~~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~  208 (315)
T 1l9x_A          130 TCLGFEELSLLISGECL-LTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLK  208 (315)
T ss_dssp             ETHHHHHHHHHHHSSCC-CEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHH
T ss_pred             EChHHHHHHHHhCCccc-cccccccCCCCCeeeccCCCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccC
Confidence            99999999999999853 4443334444677665555678899999887765555555666799999974433222 478


Q ss_pred             ccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q psy14047        241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEE  320 (350)
Q Consensus       241 ~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~  320 (350)
                      ++++++|++ .++..|++++++++++++||+|||||+..++|.....+||+.++++.++.||++|+++|+++.|+|.+.+
T Consensus       209 ~g~~v~A~s-~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~~~f~~~~  287 (315)
T 1l9x_A          209 KFFNVLTTN-TDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSES  287 (315)
T ss_dssp             HHEEEEEEE-ESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSCCCCSSHH
T ss_pred             CCCEEEEEc-CCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence            899999998 6777788899999878999999999999888875446789988999999999999999999999999999


Q ss_pred             HHHHhhhhcccceeeeccCCCCceEEeecC
Q psy14047        321 EEKAALIYNYCPEYTAYIPGIGYDQTYLFK  350 (350)
Q Consensus       321 ~~~~~l~~n~~~~~~~~~~~~~~~~~~~~~  350 (350)
                      ++.+.|||||+|+||+..  .+|+|||||+
T Consensus       288 ~~~~~liyn~~p~~~~~~--~~~~q~y~f~  315 (315)
T 1l9x_A          288 EEEKALIYQFSPIYTGNI--SSFQQCYIFD  315 (315)
T ss_dssp             HHHHHSGGGCCCEECTTT--SSCSEEEEEC
T ss_pred             HHHHhhhccCCCEecCCC--CCeeEEEeeC
Confidence            999999999999999854  6699999996

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=100.00  E-value=2.9e-36  Score=276.28  Aligned_cols=228  Identities=22%  Similarity=0.307  Sum_probs=155.2

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDG   82 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~   82 (350)
                      ++||+|||++..... ....+.+. .+|+..+|+++|+++|+.|+++|+..+.+ +.++++.+||||||||+ ||+|..|
T Consensus         2 ~~~p~IGi~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~-~v~P~~y   78 (254)
T 3fij_A            2 SLKPVIGITGNRLVK-GVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQ-DITPQLY   78 (254)
T ss_dssp             -CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCS-CCCGGGG
T ss_pred             CCCCEEEEeCCcccc-cccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCC-CCChhhc
Confidence            478999999986431 01122333 88999999999999999999999987766 88889999999999999 8998777


Q ss_pred             ccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047         83 YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI  162 (350)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI  162 (350)
                      ++.+.+..                                    +..+..++.+      .+++++++.+++  +|||||
T Consensus        79 g~~~~~~~------------------------------------~~~~~~rd~~------~~~lir~a~~~~--~PiLGI  114 (254)
T 3fij_A           79 LEEPSQEI------------------------------------GAYFPPRDSY------EIALVRAALDAG--KPIFAI  114 (254)
T ss_dssp             TCCCCTTC------------------------------------CCCCHHHHHH------HHHHHHHHHHTT--CCEEEE
T ss_pred             CCccCccc------------------------------------CCcChhhhHH------HHHHHHHHHHcC--CCEEEE
Confidence            66554221                                    1111112222      345566666666  999999


Q ss_pred             hHHHHHHHHHhcCcccc-CCcc----Cce-------eeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceee
Q psy14047        163 CLGFQLLLYTSNNENEL-RTRC----DCF-------YENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCIT  230 (350)
Q Consensus       163 C~G~QlLa~a~Gg~v~~-~~~~----~~~-------~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~  230 (350)
                      |+|||+|+.++||++.. ....    ..+       ....++..   ..++.+++.++..        ..++++|++.+.
T Consensus       115 C~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~---~~~s~l~~~~~~~--------~~v~~~H~~~v~  183 (254)
T 3fij_A          115 CRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDI---EPTSELAKHHPNK--------KLVNSLHHQFIK  183 (254)
T ss_dssp             THHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEE---CTTSSGGGTCCTT--------EEECCBCSCEES
T ss_pred             CHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEe---CCCChHHHhcCCc--------EEEEEeccchhh
Confidence            99999999999998631 1100    001       11222222   2356677665542        368999999997


Q ss_pred             cCCCccccccccceEEEEeecCCCceEEEEEEcC-Ccc-EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        231 PSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHK-VYP-FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       231 ~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~-~~~-i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                             .||++++++|++ .++.   +++++++ ++| ++|+|||||++....             ..+..||++|+++
T Consensus       184 -------~l~~g~~v~a~s-~dg~---ieai~~~~~~~~~~gvQfHPE~~~~~~-------------~~~~~lf~~Fv~~  239 (254)
T 3fij_A          184 -------KLAPSFKVTART-ADGM---IEAVEGDNLPSWYLGVQWHPELMFQTD-------------PESEQLFQALVDE  239 (254)
T ss_dssp             -------SCCSSEEEEEEE-TTCC---EEEEEESSCSSCEEEESSCGGGTGGGC-------------HHHHHHHHHHHHH
T ss_pred             -------ccCCCcEEEEEe-CCCc---EEEEEecCCCCeEEEEEcCCccCCCCC-------------chHHHHHHHHHHH
Confidence                   799999999997 5554   8999999 887 999999999875311             2468999999999


Q ss_pred             HHcCC
Q psy14047        309 ASGSH  313 (350)
Q Consensus       309 ~~~~~  313 (350)
                      |++..
T Consensus       240 ~~~~~  244 (254)
T 3fij_A          240 SKKTM  244 (254)
T ss_dssp             HHSCC
T ss_pred             HHHHH
Confidence            98764

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.95  E-value=9.5e-27  Score=204.28  Aligned_cols=177  Identities=15%  Similarity=0.180  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcc--cceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhh
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQ--VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLL  109 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~--~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (350)
                      ...++++|+++|+.++++++..+.+++.+.+..  .+++|++||+.+..                               
T Consensus        13 ~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~-------------------------------   61 (192)
T 1i1q_B           13 TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPS-------------------------------   61 (192)
T ss_dssp             HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGG-------------------------------
T ss_pred             HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCch-------------------------------
Confidence            578899999999999999998765666554543  33588888875432                               


Q ss_pred             hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeee
Q psy14047        110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYEN  189 (350)
Q Consensus       110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~  189 (350)
                                             ...+..   .+++    +.+++  +||||||+|||+|+.++||++. .......+..
T Consensus        62 -----------------------~~~~~~---~l~~----~~~~~--~PilGIC~G~Qll~~~~Gg~v~-~~~~~~~g~~  108 (192)
T 1i1q_B           62 -----------------------EAGCMP---ELLT----RLRGK--LPIIGICLGHQAIVEAYGGYVG-QAGEILHGKA  108 (192)
T ss_dssp             -----------------------GSTTHH---HHHH----HHBTT--BCEEEETHHHHHHHHHTSCCCC-C---CCSSEE
T ss_pred             -----------------------hCchHH---HHHH----HHhcC--CCEEEECcChHHHHHHhCCEEE-eCCCcEecce
Confidence                                   001111   1322    23455  9999999999999999999864 2211222222


Q ss_pred             eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047        190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA  269 (350)
Q Consensus       190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~  269 (350)
                      ..+.    ...+.+|.+++..        ..++++|++.+.       .+|++++++|+  .++   +++++++.+.++|
T Consensus       109 ~~~~----~~~~~l~~~~~~~--------~~v~~~H~~~v~-------~lp~~~~v~a~--~~~---~~~ai~~~~~~~~  164 (192)
T 1i1q_B          109 TSIE----HDGQAMFAGLANP--------LPVARYHSLVGS-------NVPAGLTINAH--FNG---MVMAVRHDADRVC  164 (192)
T ss_dssp             EEEE----ECCCGGGTTSCSS--------EEEEECCC---C-------CCCTTCEEEEE--ETT---EEEEEEETTTTEE
T ss_pred             eEEe----cCCChHHhcCCCC--------cEEEechhhHhh-------hCCCccEEEEC--CCC---cEEEEEECCCCEE
Confidence            1111    1245677776553        369999999996       78999999996  443   5899998888999


Q ss_pred             EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      |+|||||++..+               .+..++++|++.+.+
T Consensus       165 gvQfHPE~~~~~---------------~g~~il~nf~~~~~~  191 (192)
T 1i1q_B          165 GFQFHPESILTT---------------QGARLLEQTLAWAQQ  191 (192)
T ss_dssp             EESSBTTSTTCT---------------THHHHHHHHHHHHTC
T ss_pred             EEEccCcccCCc---------------ccHHHHHHHHHHHhc
Confidence            999999988542               367899999988754

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.95  E-value=5.6e-27  Score=205.18  Aligned_cols=176  Identities=21%  Similarity=0.339  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ...++++|+++|+.+++++...+.+.+..  ..+|||++|||+ +..  +                              
T Consensus        13 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~-~~~--~------------------------------   57 (189)
T 1wl8_A           13 VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP-SLE--N------------------------------   57 (189)
T ss_dssp             HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS-CTT--C------------------------------
T ss_pred             HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC-Chh--h------------------------------
Confidence            46889999999999999998775444432  468999999997 421  1                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                            ..      .+.++++++.+++  +||||||+|||+|+.++||++. .......+ ..+
T Consensus        58 ----------------------~~------~~~~~i~~~~~~~--~PilGIC~G~Q~l~~~~gg~v~-~~~~~~~G-~~~  105 (189)
T 1wl8_A           58 ----------------------TG------NCEKVLEHYDEFN--VPILGICLGHQLIAKFFGGKVG-RGEKAEYS-LVE  105 (189)
T ss_dssp             ----------------------CT------THHHHHHTGGGTC--SCEEEETHHHHHHHHHHTCEEE-ECSCCSCE-EEE
T ss_pred             ----------------------hh------hHHHHHHHHhhCC--CeEEEEcHHHHHHHHHhCCcee-cCCCcccC-cee
Confidence                                  00      0234455554555  9999999999999999999875 22223333 223


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..+   ..+.+|+.++..        ..++++|++.+.       ++|++++++|++ +++.   +++++++++|++|+
T Consensus       106 ~~~~---~~~~l~~~~~~~--------~~~~~~h~~~v~-------~l~~~~~vla~s-~~g~---i~a~~~~~~~~~gv  163 (189)
T 1wl8_A          106 IEII---DEXEIFKGLPKR--------LKVWESHMDEVK-------ELPPKFKILARS-ETCP---IEAMKHEELPIYGV  163 (189)
T ss_dssp             EEES---CC--CCTTSCSE--------EEEEECCSEEEE-------ECCTTEEEEEEE-SSCS---CSEEEESSSCEEEE
T ss_pred             EEEe---cCchHHhCCCCc--------eEEEEEeeeehh-------hCCCCcEEEEEc-CCCC---EEEEEeCCceEEEE
Confidence            3222   356677766543        357888888886       789999999997 5554   78999988789999


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      |||||++.++               .+..++++|++.|++
T Consensus       164 QfHPE~~~~~---------------~g~~l~~~f~~~~~~  188 (189)
T 1wl8_A          164 QFHPEVAHTE---------------KGEEILRNFAKLCGE  188 (189)
T ss_dssp             SSCTTSTTST---------------THHHHHHHHHHHHCC
T ss_pred             ecCCCcCCCc---------------chHHHHHHHHHHHhh
Confidence            9999987532               267999999999864

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.95  E-value=1e-26  Score=204.66  Aligned_cols=176  Identities=19%  Similarity=0.253  Sum_probs=123.6

Q ss_pred             HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047         33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI  111 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (350)
                      ..++++|+++|+.+.+++..+ +.+++..  ..+||||++||+.+..  .                              
T Consensus        15 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~--~------------------------------   60 (195)
T 1qdl_B           15 YNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPE--K------------------------------   60 (195)
T ss_dssp             HHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTT--S------------------------------
T ss_pred             HHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChh--h------------------------------
Confidence            577899999999999999864 3333322  2689999988874322  0                              


Q ss_pred             HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                          .++ ..    .+.++++++ +++  +||||||+|||+|+.++||++. ......++.+.+
T Consensus        61 --------------------~~~-~~----~~~~~i~~~-~~~--~PvLGIC~G~QlL~~~~gg~v~-~~~~~~~g~~~~  111 (195)
T 1qdl_B           61 --------------------RED-IG----VSLDVIKYL-GKR--TPILGVCLGHQAIGYAFGAKIR-RARKVFHGKISN  111 (195)
T ss_dssp             --------------------HHH-HT----THHHHHHHH-TTT--SCEEEETHHHHHHHHHTTCEEE-EEEEEEEEEEEE
T ss_pred             --------------------hhh-hh----HHHHHHHHh-cCC--CcEEEEehHHHHHHHHhCCEEe-ccCCCcCCCceE
Confidence                                000 00    022444443 444  9999999999999999999874 222223344444


Q ss_pred             ceeecCCCCC--cccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047        192 LEFMPSFRQS--LLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA  269 (350)
Q Consensus       192 i~~~~~~~~~--~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~  269 (350)
                      +..+   .++  .+|+.++..        ..++++|++++.       .+|++++++|++ .+++  .++++++++++++
T Consensus       112 v~~~---~~~~~~l~~~~~~~--------~~v~~~H~~~v~-------~l~~~~~vla~s-~~~g--~i~a~~~~~~~~~  170 (195)
T 1qdl_B          112 IILV---NNSPLSLYYGIAKE--------FKATRYHSLVVD-------EVHRPLIVDAIS-AEDN--EIMAIHHEEYPIY  170 (195)
T ss_dssp             EEEC---CSSCCSTTTTCCSE--------EEEEEEEEEEEE-------CCCTTEEEEEEE-SSSC--CEEEEEESSSSEE
T ss_pred             EEEC---CCCHhHHHhcCCCc--------eEEeccccchhh-------hCCCCcEEEEEE-CCCC--cEEEEEeCCCCEE
Confidence            4432   244  788777654        369999999997       789999999995 2333  3899999888899


Q ss_pred             EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047        270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS  307 (350)
Q Consensus       270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~  307 (350)
                      |+|||||++.++               .+..++++|++
T Consensus       171 gvQfHPE~~~~~---------------~g~~l~~~f~~  193 (195)
T 1qdl_B          171 GVQFHPESVGTS---------------LGYKILYNFLN  193 (195)
T ss_dssp             EESSBTTSTTCT---------------THHHHHHHHHH
T ss_pred             EEecCCCCCCCc---------------cHHHHHHHHHh
Confidence            999999988532               26789999986

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.95  E-value=2.6e-27  Score=211.09  Aligned_cols=175  Identities=17%  Similarity=0.272  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCC-CcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGG-GASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG-~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      ..+|+++|+++|+.+++++++.+.+.    +..+|||||||| +.++..                               
T Consensus        26 ~~~~~~~l~~~G~~~~vv~~~~~~~~----l~~~DglIl~GG~p~~~~~-------------------------------   70 (212)
T 2a9v_A           26 THREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGAPNIDEE-------------------------------   70 (212)
T ss_dssp             TCHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEECSCGGGT-------------------------------
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCCHHH----HhCCCEEEECCCCCCCCcc-------------------------------
Confidence            46799999999999999998754433    345999999999 655420                               


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                            .....    .+.+++.   +++  +||||||+|||+|+.++||++. ....+ +.+..
T Consensus        71 ----------------------~~~~~----~l~~~~~---~~~--~PiLGIC~G~Qll~~~lGg~v~-~~~~~-~~G~~  117 (212)
T 2a9v_A           71 ----------------------LDKLG----SVGKYID---DHN--YPILGICVGAQFIALHFGASVV-KAKHP-EFGKT  117 (212)
T ss_dssp             ----------------------GGGHH----HHHHHHH---HCC--SCEEEETHHHHHHHHHTTCEEE-EEEEE-EEEEE
T ss_pred             ----------------------cccch----hHHHHHH---hCC--CCEEEEChHHHHHHHHhCCEEE-cCCCc-ccCce
Confidence                                  00011    1233333   344  9999999999999999999874 22212 22233


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ++.++   ..+.+|+.++..        ..++++|++.+.       .+|++++++|++ +++.   ++++++++.+++|
T Consensus       118 ~v~~~---~~~~l~~~~~~~--------~~v~~~H~~~v~-------~l~~~~~vlA~s-~d~~---i~ai~~~~~~i~g  175 (212)
T 2a9v_A          118 KVSVM---HSENIFGGLPSE--------ITVWENHNDEII-------NLPDDFTLAASS-ATCQ---VQGFYHKTRPIYA  175 (212)
T ss_dssp             EEEES---CCCGGGTTCCSE--------EEEEEEEEEEEE-------SCCTTEEEEEEC-SSCS---CSEEEESSSSEEE
T ss_pred             eeEEC---CCChhHhcCCCc--------eEEEeEhhhhHh-------hCCCCcEEEEEe-CCCC---EEEEEECCCCEEE
Confidence            44332   356788776543        358999999997       789999999997 5554   7899988778999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +|||||++..+               .+..++++|++.|++
T Consensus       176 vQfHPE~~~~~---------------~g~~l~~~F~~~~~~  201 (212)
T 2a9v_A          176 TQFHPEVEHTQ---------------YGRDIFRNFIGICAS  201 (212)
T ss_dssp             ESSCTTSTTST---------------THHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCc---------------cHHHHHHHHHHHHHH
Confidence            99999987421               367999999999865

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.94  E-value=9.4e-27  Score=208.27  Aligned_cols=190  Identities=17%  Similarity=0.215  Sum_probs=131.4

Q ss_pred             CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047          6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK   85 (350)
Q Consensus         6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~   85 (350)
                      .+.|+|+....            .|+ ..++++|+++|+.++++|++.+.+.+..  ..+||||||||+.+..  .    
T Consensus        24 ~~~I~iiD~g~------------~~~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~~~--~----   82 (218)
T 2vpi_A           24 EGAVVILDAGA------------QYG-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSVY--A----   82 (218)
T ss_dssp             TTCEEEEECST------------TTT-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC-------------
T ss_pred             CCeEEEEECCC------------chH-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCcccc--c----
Confidence            36788876432            122 5677999999999999999887665543  5799999999984321  0    


Q ss_pred             cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047         86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG  165 (350)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G  165 (350)
                                     +.                              ...       +.+   +..+++  +||||||+|
T Consensus        83 ---------------~~------------------------------~~~-------~~~---~~~~~~--~PilGIC~G  105 (218)
T 2vpi_A           83 ---------------ED------------------------------APW-------FDP---AIFTIG--KPVLGICYG  105 (218)
T ss_dssp             -----------------------------------------------CCC-------CCG---GGGTSS--CCEEEETHH
T ss_pred             ---------------cc------------------------------chh-------HHH---HHHHcC--CCEEEEcHH
Confidence                           00                              000       000   112344  999999999


Q ss_pred             HHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceE
Q psy14047        166 FQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV  245 (350)
Q Consensus       166 ~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~v  245 (350)
                      ||+|+.++||++. ..... +....++...   .+++||+.++..        ..++++|++++.       .+|+++++
T Consensus       106 ~Qll~~~~GG~v~-~~~~~-~~G~~~v~~~---~~~~l~~~l~~~--------~~v~~~H~~~v~-------~l~~~~~v  165 (218)
T 2vpi_A          106 MQMMNKVFGGTVH-KKSVR-EDGVFNISVD---NTCSLFRGLQKE--------EVVLLTHGDSVD-------KVADGFKV  165 (218)
T ss_dssp             HHHHHHHTTCCEE-EEEEC-SCEEEEEEEC---TTSGGGTTCCSE--------EEEEECSEEEES-------SCCTTCEE
T ss_pred             HHHHHHHhCCceE-eCCCC-cccEEEEEEc---cCChhHhcCCCC--------cEEeehhhhHhh-------hcCCCCEE
Confidence            9999999999974 22212 2223444432   357788877653        368999999996       78999999


Q ss_pred             EEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcCC
Q psy14047        246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGSH  313 (350)
Q Consensus       246 la~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~~  313 (350)
                      +|++  ++   +++++++++.+++|+|||||++..+               .+..||++|+ +.|+...
T Consensus       166 lA~s--~~---~i~ai~~~~~~i~gvQfHPE~~~~~---------------~g~~l~~~F~~~~~~~~~  214 (218)
T 2vpi_A          166 VARS--GN---IVAGIANESKKLYGAQFHPEVGLTE---------------NGKVILKNFLYDIAGCSG  214 (218)
T ss_dssp             EEEE--TT---EEEEEEETTTTEEEESSCTTSTTST---------------THHHHHHHHHTTTTCCCC
T ss_pred             EEEc--CC---eEEEEEECCCCEEEEEcCCCCCCCh---------------hHHHHHHHHHHHHhCCCC
Confidence            9995  33   5999998888999999999987531               3689999999 8886543

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.94  E-value=9e-26  Score=216.13  Aligned_cols=174  Identities=17%  Similarity=0.259  Sum_probs=126.6

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .+++++|+++|+.++++|++.+.+++..  ..+|||+|+||+.|..                                  
T Consensus       202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgdp~----------------------------------  245 (379)
T 1a9x_B          202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGDPA----------------------------------  245 (379)
T ss_dssp             HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBCST----------------------------------
T ss_pred             HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCChH----------------------------------
Confidence            6799999999999999999877655542  3799999999986532                                  


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          ...      ..++.++++.+++  +||||||+|||+|+.++||++. ....+.++...|+
T Consensus       246 --------------------~~~------~~~~~Ir~~~~~~--~PILGIClG~QLLa~A~GG~v~-k~~~gh~g~n~pv  296 (379)
T 1a9x_B          246 --------------------PCD------YAITAIQKFLETD--IPVFGICLGHQLLALASGAKTV-KMKFGHHGGNHPV  296 (379)
T ss_dssp             --------------------TCH------HHHHHHHHHTTSC--CCEEEETHHHHHHHHHTTCCEE-EEEEEEEEEEEEE
T ss_pred             --------------------HHH------HHHHHHHHHHHcC--CCEEEECchHHHHHHHhCcEEE-ecccccccCceee
Confidence                                011      1345566666665  9999999999999999999975 3333444444444


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ...   ....+               ..+.++|+++|...     .||+++++++++.+|+.   +++++++++|+||+|
T Consensus       297 ~~~---~~g~v---------------~its~~H~~aV~~~-----~Lp~~~~v~a~s~~Dg~---ieai~~~~~pi~gVQ  350 (379)
T 1a9x_B          297 KDV---EKNVV---------------MITAQNHGFAVDEA-----TLPANLRVTHKSLFDGT---LQGIHRTDKPAFSFQ  350 (379)
T ss_dssp             EET---TTTEE---------------EEEEEEEEEEECST-----TCCTTEEEEEEETTTCC---EEEEEESSSSEEEES
T ss_pred             Eec---CCCcE---------------EEEecCccceEecc-----cCCCCeEEEEEeCCCCc---EEEEEECCCCEEEEE
Confidence            211   01111               13567899999743     48999999999633444   899999888999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      ||||.++.+.              ++.+||+.|++.|++
T Consensus       351 FHPE~~~~p~--------------d~~~Lf~~Fl~~~~~  375 (379)
T 1a9x_B          351 GNPEASPGPH--------------DAAPLFDHFIELIEQ  375 (379)
T ss_dssp             SCTTCSSSCS--------------TTTHHHHHHHHHHHH
T ss_pred             eCCcCCCCcc--------------cHHHHHHHHHHHHHH
Confidence            9999886421              256899999999865

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.93  E-value=2.4e-25  Score=223.35  Aligned_cols=197  Identities=17%  Similarity=0.220  Sum_probs=138.8

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY   83 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~   83 (350)
                      +.++.|+|+-...            +| ...++++|+++|+.+.++|++.+.+++..+  .+||||||||+.++....  
T Consensus         5 ~~~~~IlIlD~g~------------~~-~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s~~~~~--   67 (525)
T 1gpm_A            5 IHKHRILILDFGS------------QY-TQLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPESTTEEN--   67 (525)
T ss_dssp             TTSSEEEEEECSC------------TT-HHHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSCTTSTT--
T ss_pred             CCCCEEEEEECCC------------cc-HHHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCccccccC--
Confidence            3557899986432            22 267889999999999999998887777653  579999999996553100  


Q ss_pred             cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047         84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC  163 (350)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC  163 (350)
                       .|                                      +       ..             ++..+.|  +||||||
T Consensus        68 -~~--------------------------------------~-------~~-------------~~~~~~g--~PvLGIC   86 (525)
T 1gpm_A           68 -SP--------------------------------------R-------AP-------------QYVFEAG--VPVFGVC   86 (525)
T ss_dssp             -CC--------------------------------------C-------CC-------------GGGGTSS--SCEEEET
T ss_pred             -Cc--------------------------------------c-------hH-------------HHHHHCC--CCEEEEC
Confidence             00                                      0       00             0112344  9999999


Q ss_pred             HHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccc
Q psy14047        164 LGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW  243 (350)
Q Consensus       164 ~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~  243 (350)
                      +|||+|+.++||++. ..... +.+...+...   ..++||++++............++++|++.+.       .+|+++
T Consensus        87 ~G~Qlla~~~GG~V~-~~~~~-e~G~~~v~~~---~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~-------~lp~g~  154 (525)
T 1gpm_A           87 YGMQTMAMQLGGHVE-ASNER-EFGYAQVEVV---NDSALVRGIEDALTADGKPLLDVWMSHGDKVT-------AIPSDF  154 (525)
T ss_dssp             HHHHHHHHHHTCEEE-CCSSC-EEEEEEEEEC---SCCTTTTTCCSEECTTSCEEEEEEEEECSEEE-------ECCTTC
T ss_pred             hHHHHHHHHcCCEEE-eCCCc-ccceEEEEeC---CCCHhhccCccccccccccceEEEEEccceee-------eCCCCC
Confidence            999999999999975 23222 2233344432   34678888765221111113469999999997       899999


Q ss_pred             eEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047        244 KVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA  309 (350)
Q Consensus       244 ~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~  309 (350)
                      +++|++ +++.   ++++++++.++||+|||||++..+               .+..++++|+..+
T Consensus       155 ~v~A~s-~~~~---i~ai~~~~~~i~gvQFHPE~~~~~---------------~g~~ll~nF~~~i  201 (525)
T 1gpm_A          155 ITVAST-ESCP---FAIMANEEKRFYGVQFHPEVTHTR---------------QGMRMLERFVRDI  201 (525)
T ss_dssp             EEEEEC-SSCS---CSEEEETTTTEEEESBCTTSTTST---------------THHHHHHHHHHTT
T ss_pred             EEEEEC-CCCC---EEEEEECCCCEEEEecCCCCCcch---------------hHHHHHHHHHHhh
Confidence            999997 5554   789999888999999999987532               3789999999543

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.93  E-value=3.1e-25  Score=222.53  Aligned_cols=206  Identities=17%  Similarity=0.225  Sum_probs=136.5

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY   83 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~   83 (350)
                      |++..|+|+-.-.            +| ...++++|+++|+.+.++|++.+.+++..  .++||||||||+.++...   
T Consensus         8 ~~~~~I~IlD~g~------------~~-~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~--~~~dgIILsGGp~sv~~~---   69 (527)
T 3tqi_A            8 IHQHRILILDFGS------------QY-AQLIARRVREIGVYCELMPCDIDEETIRD--FNPHGIILSGGPETVTLS---   69 (527)
T ss_dssp             CCCSEEEEEECSC------------TT-HHHHHHHHHHHTCEEEEEETTCCSSSSTT--TCCSEEEECCCCC--------
T ss_pred             ccCCeEEEEECCC------------cc-HHHHHHHHHHCCCeEEEEECCCCHHHHHh--cCCCEEEECCcCcccccC---
Confidence            3456788886432            22 26788999999999999999876655432  156999999998654300   


Q ss_pred             cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047         84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC  163 (350)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC  163 (350)
                                                                         ....    +   ..+..+.|  +||||||
T Consensus        70 ---------------------------------------------------~~~~----~---~~~~~~~~--~PvLGIC   89 (527)
T 3tqi_A           70 ---------------------------------------------------HTLR----A---PAFIFEIG--CPVLGIC   89 (527)
T ss_dssp             -----------------------------------------------------------C---CCSTTTSS--SCEEEET
T ss_pred             ---------------------------------------------------CChh----h---HHHHHhcC--CCEEEEC
Confidence                                                               0000    0   11122344  9999999


Q ss_pred             HHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccc
Q psy14047        164 LGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW  243 (350)
Q Consensus       164 ~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~  243 (350)
                      +|||+|+.++||++. ...... .+...+...   ..+.+|++++..+.........++++|++.+.       .+|+++
T Consensus        90 ~G~Qlla~~lGG~V~-~~~~~e-~G~~~v~~~---~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~-------~lp~g~  157 (527)
T 3tqi_A           90 YGMQTMAYQLGGKVN-RTAKAE-FGHAQLRVL---NPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVS-------ELPPGF  157 (527)
T ss_dssp             HHHHHHHHHSSSCBC------C-EEEEEEEES---SCTTTTSSCCSBCCTTSCCEEEEEEESSSCBC-------SCCTTC
T ss_pred             hHHHHHHHHcCCeEE-eCCCcc-ccceEEEEc---CCChhhcCCccccccccccceEEEEEcccchh-------ccCCCC
Confidence            999999999999975 332222 233344432   34678888765211000112469999999997       899999


Q ss_pred             eEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCC
Q psy14047        244 KVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFET  318 (350)
Q Consensus       244 ~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~  318 (350)
                      +++|++ +++   .+++++++++++||+|||||++.++               .+..++++|+...-.-...++-
T Consensus       158 ~v~A~s-~~~---~i~ai~~~~~~~~GvQFHPE~~~t~---------------~G~~ll~nF~~~i~~~~~~w~~  213 (527)
T 3tqi_A          158 EATACT-DNS---PLAAMADFKRRFFGLQFHPEVTHTP---------------QGHRILAHFVIHICQCIPNWTT  213 (527)
T ss_dssp             EEEEEE-TTE---EEEEEECSSSCEEEESBCSSSTTST---------------THHHHHHHHHHTTSCCCCCCCS
T ss_pred             EEEEEe-CCC---cEEEEEcCCCCEEEEEecccccccc---------------ccchhhhhhhhhcccccchhhH
Confidence            999996 443   4899999888999999999987542               3678999999555444444443

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.92  E-value=3e-25  Score=201.32  Aligned_cols=163  Identities=16%  Similarity=0.163  Sum_probs=113.0

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .++.+++++.|..+.+++++.. +.+...++.+||||||||+.+..  +  +.                           
T Consensus        27 ~~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~--~--~~---------------------------   74 (239)
T 1o1y_A           27 GMMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAY--E--EE---------------------------   74 (239)
T ss_dssp             THHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTT--C--TT---------------------------
T ss_pred             hHHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCcccc--C--Cc---------------------------
Confidence            4567888999998887776432 12223467889999999985432  0  00                           


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                         ....+.    .+.++++++.+++  +||||||+|||+|+.++||++. ....+.+....++
T Consensus        75 -------------------~~~~l~----~~~~~i~~~~~~~--~PiLGIC~G~QlL~~alGG~v~-~~~~g~~~G~~~v  128 (239)
T 1o1y_A           75 -------------------KYPFLK----YEFQLIEEILKKE--IPFLGICLGSQMLAKVLGASVY-RGKNGEEIGWYFV  128 (239)
T ss_dssp             -------------------TCTHHH----HHHHHHHHHHHHT--CCEEEETHHHHHHHHHTTCCEE-ECTTCCEEEEEEE
T ss_pred             -------------------cChhHH----HHHHHHHHHHHCC--CCEEEEchhHHHHHHHcCCeEe-cCCCCCccccEEE
Confidence                               011111    2456666666666  9999999999999999999975 3332233334454


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..   ...+++|+.++..        ..++++|++.+        .+|++++++|++ +++.   ++++++++  ++|+|
T Consensus       129 ~~---~~~~~l~~~~~~~--------~~~~~~H~~~v--------~lp~~~~vlA~s-~~~~---iea~~~~~--i~gvQ  183 (239)
T 1o1y_A          129 EK---VSDNKFFREFPDR--------LRVFQWHGDTF--------DLPRRATRVFTS-EKYE---NQGFVYGK--AVGLQ  183 (239)
T ss_dssp             EE---CCCCGGGTTSCSE--------EEEEEEESEEE--------CCCTTCEEEEEC-SSCS---CSEEEETT--EEEES
T ss_pred             EE---CCCCchHHhCCCC--------ceeEeecCCcc--------ccCCCCEEEEEc-CCCC---EEEEEECC--EEEEE
Confidence            42   2456788777654        36899999988        589999999997 5555   67999875  99999


Q ss_pred             ccCCcC
Q psy14047        273 FHPEKN  278 (350)
Q Consensus       273 fHPE~~  278 (350)
                      ||||++
T Consensus       184 fHPE~~  189 (239)
T 1o1y_A          184 FHIEVG  189 (239)
T ss_dssp             SBSSCC
T ss_pred             eCccCC
Confidence            999975

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.92  E-value=2.2e-25  Score=222.55  Aligned_cols=176  Identities=18%  Similarity=0.233  Sum_probs=129.4

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ..++++|+++|+.+.++|++.+.+.+..+  .+||||||||+.++....   .|.                         
T Consensus        13 ~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s~~~~~---~~~-------------------------   62 (503)
T 2ywb_A           13 RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRSVFDPD---APR-------------------------   62 (503)
T ss_dssp             HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSCSSCTT---CCC-------------------------
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCchhccCC---Ccc-------------------------
Confidence            78899999999999999998777766542  579999999996543100   000                         


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          .+             ++..+.|  +||||||+|||+|+.++||++. ..... +.+...+
T Consensus        63 --------------------~~-------------~~~~~~~--~PvLGIC~G~Qlla~~~GG~v~-~~~~~-e~G~~~v  105 (503)
T 2ywb_A           63 --------------------PD-------------PRLFSSG--LPLLGICYGMQLLAQELGGRVE-RAGRA-EYGKALL  105 (503)
T ss_dssp             --------------------CC-------------GGGGCSS--CCEEEETHHHHHHHHTTTCEEE-CC----CEEEEEC
T ss_pred             --------------------hH-------------HHHHhCC--CCEEEECHHHHHHHHHhCCeEe-eCCCC-ccceEEE
Confidence                                00             0112344  9999999999999999999975 22222 2233444


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ...   . +.||++++..        ..++++|++.+.       .+|++++++|++ +++.   +++++++++++||+|
T Consensus       106 ~~~---~-~~l~~~~~~~--------~~v~~~H~~~v~-------~lp~g~~v~A~s-~~~~---i~ai~~~~~~~~gvQ  162 (503)
T 2ywb_A          106 TRH---E-GPLFRGLEGE--------VQVWMSHQDAVT-------APPPGWRVVAET-EENP---VAAIASPDGRAYGVQ  162 (503)
T ss_dssp             SEE---C-SGGGTTCCSC--------CEEEEECSCEEE-------ECCTTCEEEEEC-SSCS---CSEEECTTSSEEEES
T ss_pred             Eec---C-cHHhhcCCCc--------cEEEEECCCccc-------cCCCCCEEEEEE-CCCC---EEEEEeCCCCEEEEe
Confidence            432   2 6788877653        369999999997       899999999997 5554   889999888999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH  313 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~  313 (350)
                      ||||++..+               .+..++++|++.|....
T Consensus       163 FHPE~~~~~---------------~g~~ll~~F~~~~~~~~  188 (503)
T 2ywb_A          163 FHPEVAHTP---------------KGMQILENFLELAGVKR  188 (503)
T ss_dssp             BCTTSTTST---------------THHHHHHHHHHHTTCCC
T ss_pred             cCCCccccc---------------ccHHHHHHHHHHhhhhc
Confidence            999987532               37899999998886553

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.92  E-value=5.8e-25  Score=221.47  Aligned_cols=207  Identities=19%  Similarity=0.262  Sum_probs=136.0

Q ss_pred             CCCCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047          2 EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD   81 (350)
Q Consensus         2 ~~~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~   81 (350)
                      |-.....|.|+-.-+.            | ...++++|+++|+.+.++|++.+.+.+..  ..+||||||||+.++....
T Consensus         3 ~~~~~~~IlilD~Gs~------------~-~~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~s~~~~~   67 (556)
T 3uow_A            3 EGEEYDKILVLNFGSQ------------Y-FHLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPYSVTEAG   67 (556)
T ss_dssp             ----CCEEEEEESSCT------------T-HHHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSCCTTSTT
T ss_pred             CCCCCCEEEEEECCCc------------c-HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCCcccccC
Confidence            3344567777764321            1 36788999999999999999776655432  3789999999997653100


Q ss_pred             cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEE
Q psy14047         82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMG  161 (350)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlG  161 (350)
                         .|                                           .  ...      .+++.+.+   +|  +||||
T Consensus        68 ---~~-------------------------------------------~--~~~------~l~~~a~~---~g--~PvLG   88 (556)
T 3uow_A           68 ---SP-------------------------------------------H--LKK------EVFEYFLE---KK--IPIFG   88 (556)
T ss_dssp             ---CC-------------------------------------------C--CCH------HHHHHHHH---TT--CCEEE
T ss_pred             ---Cc-------------------------------------------c--hhH------HHHHHhhh---cC--CCEEE
Confidence               00                                           0  011      14444433   34  99999


Q ss_pred             ehHHHHHHHHHhcCccccCCccCceeeeeeceeecCC----------------------------CCCcccccC-CchhH
Q psy14047        162 ICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSF----------------------------RQSLLYSRA-PIHVL  212 (350)
Q Consensus       162 IC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~----------------------------~~~~lf~~~-~~~~~  212 (350)
                      ||+|||+|+.++||++. ..... +.+...+.+....                            ..+.+|.++ +.   
T Consensus        89 IC~G~QlLa~~lGG~V~-~~~~~-E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~---  163 (556)
T 3uow_A           89 ICYGMQEIAVQMNGEVK-KSKTS-EYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSD---  163 (556)
T ss_dssp             ETHHHHHHHHHTTCEEE-EEEEE-EEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSS---
T ss_pred             ECHHHHHHHHHhCCcEe-cCCCc-ccCCcceeeccCcccccccceecccccccccccccccccccccchhhcccccC---
Confidence            99999999999999974 22211 2222333332211                            122466655 43   


Q ss_pred             HhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCch
Q psy14047        213 QELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTR  292 (350)
Q Consensus       213 ~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~  292 (350)
                           ...++++|++.+.       .+|++++++|++ +++   .+++++++++++||+|||||++..+           
T Consensus       164 -----~~~v~~~H~d~V~-------~lp~g~~vlA~s-~~~---~i~ai~~~~~~i~GvQFHPE~~~~~-----------  216 (556)
T 3uow_A          164 -----ITTVWMNHNDEVT-------KIPENFYLVSSS-ENC---LICSIYNKEYNIYGVQYHPEVYESL-----------  216 (556)
T ss_dssp             -----EEEEEEEEEEEEE-------ECCTTCEEEEEE-TTE---EEEEEEETTTTEEEESSCTTSTTST-----------
T ss_pred             -----ceEEEEEccceee-------ccCCCcEEEEEe-CCC---CEEEEEECCCCEEEEEcCCCCCccc-----------
Confidence                 2469999999997       899999999996 544   4899999888999999999987542           


Q ss_pred             HHHHhHHHHHHHHHHHHHcCCCCCCC
Q psy14047        293 IAIENARYFFDWLVSQASGSHHSFET  318 (350)
Q Consensus       293 ~~~~~~~~i~~~Fv~~~~~~~~~~~~  318 (350)
                          .+..++++|+.....-...++-
T Consensus       217 ----~G~~ll~nFl~~i~g~~~~~~~  238 (556)
T 3uow_A          217 ----DGELMFYNFAYNICKCKKQFDP  238 (556)
T ss_dssp             ----THHHHHHHHHTTTTCCCC-CCH
T ss_pred             ----cchHHHHHHHHHhhcccccccc
Confidence                3788999999544333344443

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.92  E-value=1e-24  Score=190.18  Aligned_cols=171  Identities=16%  Similarity=0.230  Sum_probs=112.1

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .+|+++|+++|+.+++++..   +    .++.+|||++|||+.+.                     |.+..         
T Consensus        13 ~~~~~~l~~~G~~~~~~~~~---~----~~~~~dglil~GG~~~~---------------------~~~~~---------   55 (186)
T 2ywj_A           13 EEHEEAIKKAGYEAKKVKRV---E----DLEGIDALIIPGGESTA---------------------IGKLM---------   55 (186)
T ss_dssp             HHHHHHHHHTTSEEEEECSG---G----GGTTCSEEEECCSCHHH---------------------HHHHH---------
T ss_pred             HHHHHHHHHCCCEEEEECCh---H----HhccCCEEEECCCCchh---------------------hhhhh---------
Confidence            56789999999999988742   1    36788999999997322                     11110         


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                             ...   .+.+.++   +++  +||||||+|||+|+.++||++..++..+......+.
T Consensus        56 -----------------------~~~---~~~~~i~---~~~--~PilGIC~G~Qll~~~~gg~~~~lg~~~~~~~~~~~  104 (186)
T 2ywj_A           56 -----------------------KKY---GLLEKIK---NSN--LPILGTCAGMVLLSKGTGINQILLELMDITVKRNAY  104 (186)
T ss_dssp             -----------------------HHT---THHHHHH---TCC--CCEEEETHHHHHHSSCCSSCCCCCCCSSEEEETTTT
T ss_pred             -----------------------hcc---CHHHHHH---hcC--CcEEEECHHHHHHHHHhCCCcCccCCCceeEEeccC
Confidence                                   000   1334444   444  999999999999999999985423322211110000


Q ss_pred             eeecCC-CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        193 EFMPSF-RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       193 ~~~~~~-~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ...... ..+.++..+ .        ...++++|++++.       .+ |++++++|++  + +  ++++++++  +++|
T Consensus       105 ~~~~~~~~~~~~~~~~-~--------~~~~~~~H~~~v~-------~l~~~~~~v~a~s--d-~--~~~a~~~~--~~~g  161 (186)
T 2ywj_A          105 GRQVDSFEKEIEFKDL-G--------KVYGVFIRAPVVD-------KILSDDVEVIARD--G-D--KIVGVKQG--KYMA  161 (186)
T ss_dssp             CSSSCCEEEEEEETTT-E--------EEEEEESSCCEEE-------EECCTTCEEEEEE--T-T--EEEEEEET--TEEE
T ss_pred             CCcccceecccccccC-C--------cEEEEEEecceee-------ecCCCCeEEEEEE--C-C--EEEEEeeC--CEEE
Confidence            000000 011233332 1        2358899999997       78 9999999995  3 3  48899975  6999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +|||||++.                 .+..++++|++.|++
T Consensus       162 vQfHPE~~~-----------------~g~~l~~~F~~~~~~  185 (186)
T 2ywj_A          162 LSFHPELSE-----------------DGYKVYKYFVENCVK  185 (186)
T ss_dssp             ESSCGGGST-----------------THHHHHHHHHHHHTC
T ss_pred             EECCCCcCC-----------------chhHHHHHHHHHHhh
Confidence            999999763                 267899999999865

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.92  E-value=2.3e-25  Score=198.14  Aligned_cols=123  Identities=17%  Similarity=0.228  Sum_probs=76.0

Q ss_pred             HhhCCCCccEEEehHHHHHHHHHhcCcccc-------CCccCceeeeee----------ceeecCCCCCcccccCCchhH
Q psy14047        150 FNENRDYFPIMGICLGFQLLLYTSNNENEL-------RTRCDCFYENLA----------LEFMPSFRQSLLYSRAPIHVL  212 (350)
Q Consensus       150 ~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~-------~~~~~~~~~~~~----------i~~~~~~~~~~lf~~~~~~~~  212 (350)
                      ..+.+  +||||||+|||+|+.++|+++..       +...+......+          ...+.....+.+|.+++..  
T Consensus        68 ~~~~~--~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--  143 (211)
T 4gud_A           68 VKRVE--KPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEPD--  143 (211)
T ss_dssp             HHHCC--SCEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCTT--
T ss_pred             HHHcC--CCEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCCC--
Confidence            33455  99999999999999999887531       111111111000          0001112345666666554  


Q ss_pred             HhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCch
Q psy14047        213 QELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTR  292 (350)
Q Consensus       213 ~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~  292 (350)
                            ..++++|++.+.          ++..++|++ +++ ..++++++.  +|+||+|||||++.             
T Consensus       144 ------~~~~~~H~~~v~----------~~~~~~a~~-~~g-~~~~~~v~~--~~v~GvQFHPE~s~-------------  190 (211)
T 4gud_A          144 ------AYFYFVHSFAMP----------VGDYTIAQC-EYG-QPFSAAIQA--GNYYGVQFHPERSS-------------  190 (211)
T ss_dssp             ------CCEEEEESEECC----------CCTTEEEEE-ESS-SEEEEEEEE--TTEEEESSCGGGSH-------------
T ss_pred             ------cEEEEEeeEEeC----------CCCeEEEEe-cCC-CeEEEEEeC--CCEEEEEccCEecC-------------
Confidence                  468999998763          456778886 444 445666664  48999999999762             


Q ss_pred             HHHHhHHHHHHHHHHHHHcC
Q psy14047        293 IAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       293 ~~~~~~~~i~~~Fv~~~~~~  312 (350)
                         +.+.+|+++|++.|.++
T Consensus       191 ---~~G~~ll~nFl~~~ge~  207 (211)
T 4gud_A          191 ---KAGARLIQNFLELRGEN  207 (211)
T ss_dssp             ---HHHHHHHHHHHHC----
T ss_pred             ---ccHHHHHHHHHHHhccc
Confidence               34789999999998765

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.92  E-value=1e-24  Score=201.41  Aligned_cols=145  Identities=15%  Similarity=0.192  Sum_probs=91.7

Q ss_pred             HHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc---------e-----------------eeeeeceeecCC
Q psy14047        145 KIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC---------F-----------------YENLALEFMPSF  198 (350)
Q Consensus       145 ~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~---------~-----------------~~~~~i~~~~~~  198 (350)
                      ++++.+.+++  +||||||+|||+|+.++||++..+.....         .                 ..+.++.++  .
T Consensus        87 ~~i~~~~~~~--~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~--~  162 (273)
T 2w7t_A           87 AAAQVARMNN--IPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIV--E  162 (273)
T ss_dssp             HHHHHHHHHT--CCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEEC--C
T ss_pred             HHHHHHHHCC--CcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEe--c
Confidence            4444444444  99999999999999999999742222110         0                 001111110  0


Q ss_pred             CCCcccccCCchhHHhhcccceEEE--eecceeecCCCccccc-cccceEEEEeecCC-C-ceEEEEEEcCCccE-EEEc
Q psy14047        199 RQSLLYSRAPIHVLQELATSHITHN--WHMWCITPSNFTDNGL-AKEWKVLSTNSNNR-G-LKFISSVEHKVYPF-AGIQ  272 (350)
Q Consensus       199 ~~~~lf~~~~~~~~~~~~~~~~v~~--~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~-~-~e~v~ai~~~~~~i-~gvQ  272 (350)
                      .++.+++.+        +....+++  .|++.+.++...  .| |++++++|++ +++ + ..++++|+++++|+ +|+|
T Consensus       163 ~~s~l~~~~--------~~~~~v~~~H~Hsy~v~~~~v~--~l~~~g~~v~A~s-~d~~~~g~~ieaie~~~~p~~~GvQ  231 (273)
T 2w7t_A          163 KSSIMAKIY--------SKSNIVVERHRHRYEVNTAYFE--DLRKAGLCISAVT-DPTFSSRCRVEAVENPSLRFFLAVQ  231 (273)
T ss_dssp             TTSHHHHHT--------TTCSEEEEEEEECCEECGGGHH--HHHHTTCEEEEES-CTTCCTTCCEEEEECTTSSSEEEES
T ss_pred             CCcHHHHHh--------CCCceEEeecccccccCHHHHH--hhccCCcEEEEEc-CCcCCCCCeEEEEEcCCCCeEEEEe
Confidence            122333222        22334555  567888643221  47 7899999997 441 0 12599999998885 5999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCC
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFET  318 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~  318 (350)
                      ||||++....              ....||++|+++|++..+.|.+
T Consensus       232 fHPE~~~~~~--------------~~~~l~~~Fv~~~~~~~~~~~~  263 (273)
T 2w7t_A          232 FHPEFISTPM--------------DPAPTYLSFMAAAAKKDYVWPQ  263 (273)
T ss_dssp             SCGGGSCBTT--------------BCCHHHHHHHHHHHTCCCCCCS
T ss_pred             CCCCcCCCCC--------------chHHHHHHHHHHHHHHHHhhhh
Confidence            9999885421              1368999999999999888875

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.91  E-value=2.6e-24  Score=195.97  Aligned_cols=164  Identities=13%  Similarity=0.081  Sum_probs=112.3

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .++.+++++.|..+..+....... +..-++.+||||++||+.++..                                 
T Consensus        18 ~~i~~~l~~~G~~v~v~~~~~~~~-~p~~~~~~d~lIl~GGp~~~~d---------------------------------   63 (250)
T 3m3p_A           18 GHFGDFLAGEHIPFQVLRMDRSDP-LPAEIRDCSGLAMMGGPMSAND---------------------------------   63 (250)
T ss_dssp             HHHHHHHHHTTCCEEEEEGGGTCC-CCSCGGGSSEEEECCCSSCTTS---------------------------------
T ss_pred             HHHHHHHHHCCCeEEEEeccCCCc-CcCccccCCEEEECCCCCcccc---------------------------------
Confidence            677789999999988888643211 0112467888888888754320                                 


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                         +...+.    .+.++++++.+.+  +||||||+|+|+|+.++||+|. ....+ +.++.++
T Consensus        64 -------------------~~~~~~----~~~~~i~~~~~~~--~PvlGIC~G~Qll~~~lGG~V~-~~~~~-e~G~~~v  116 (250)
T 3m3p_A           64 -------------------DLPWMP----TLLALIRDAVAQR--VPVIGHCLGGQLLAKAMGGEVT-DSPHA-EIGWVRA  116 (250)
T ss_dssp             -------------------CCTTHH----HHHHHHHHHHHHT--CCEEEETHHHHHHHHHTTCCEE-EEEEE-EEEEEEE
T ss_pred             -------------------cchHHH----HHHHHHHHHHHcC--CCEEEECHHHHHHHHHhCCEEE-eCCCC-ceeeEEE
Confidence                               011121    1445566655556  9999999999999999999975 23222 2334555


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..+.....+++| +++..        ..++++|++.+        .||++++++|+| +++   .+++++.++ ++||+|
T Consensus       117 ~~~~~~~~~~l~-g~~~~--------~~v~~~H~~~v--------~lp~~~~vlA~s-~~~---~~~a~~~~~-~~~GvQ  174 (250)
T 3m3p_A          117 WPQHVPQALEWL-GTWDE--------LELFEWHYQTF--------SIPPGAVHILRS-EHC---ANQAYVLDD-LHIGFQ  174 (250)
T ss_dssp             EECSSHHHHHHH-SCSSC--------EEEEEEEEEEE--------CCCTTEEEEEEE-TTE---EEEEEEETT-TEEEES
T ss_pred             EEecCCCCcccc-cCCCc--------cEEEEEcccee--------ecCCCCEEEEEe-CCC---CEEEEEECC-eeEEEE
Confidence            443222234577 55543        36999999998        589999999997 554   388999876 699999


Q ss_pred             ccCCcCC
Q psy14047        273 FHPEKNA  279 (350)
Q Consensus       273 fHPE~~~  279 (350)
                      ||||++.
T Consensus       175 fHPE~~~  181 (250)
T 3m3p_A          175 CHIEMQA  181 (250)
T ss_dssp             SCTTCCH
T ss_pred             eCCcCCH
Confidence            9999874

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.91  E-value=4.6e-24  Score=193.11  Aligned_cols=168  Identities=17%  Similarity=0.160  Sum_probs=115.1

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ..+.+++++.|..+..++...... +..-++.+||||++||+.+.... .                              
T Consensus        15 g~~~~~l~~~g~~~~~~~~~~~~~-~p~~~~~~d~lii~GGp~~~~~~-~------------------------------   62 (236)
T 3l7n_A           15 GAYLAWAALRGHDVSMTKVYRYEK-LPKDIDDFDMLILMGGPQSPSST-K------------------------------   62 (236)
T ss_dssp             HHHHHHHHHTTCEEEEEEGGGTCC-CCSCGGGCSEEEECCCSSCTTCC-T------------------------------
T ss_pred             hHHHHHHHHCCCeEEEEeeeCCCC-CCCCccccCEEEECCCCCCcccc-c------------------------------
Confidence            567789999999998888743321 11125678999999998653200 0                              


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHH-HHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYA-KAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~-~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                                         +...|. ..  .+.++++++.+++  +||||||+|||+|+.++||++. ....+ +.+..+
T Consensus        63 -------------------~~~~~~~~~--~~~~~i~~~~~~~--~PvLGIClG~QlL~~~~Gg~v~-~~~~~-~~G~~~  117 (236)
T 3l7n_A           63 -------------------KEFPYYDAQ--AEVKLIQKAAKSE--KIIVGVCLGAQLMGVAYGADYL-HSPKK-EIGNYL  117 (236)
T ss_dssp             -------------------TTCTTCCHH--HHHHHHHHHHHTT--CEEEEETHHHHHHHHHTTCCCE-EEEEE-EEEEEE
T ss_pred             -------------------ccCcccchH--HHHHHHHHHHHcC--CCEEEEchHHHHHHHHhCCEEe-cCCCc-eeeeEE
Confidence                               001111 00  1346666666666  9999999999999999999874 22222 233456


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..+.....+++|..++..+        .++++|++..        .+|++++++|++ +++.   +++++.++ ++||+
T Consensus       118 v~~~~~~~~~~l~~~~~~~~--------~v~~~H~~~~--------~lp~~~~vla~s-~~~~---~~a~~~~~-~v~gv  176 (236)
T 3l7n_A          118 ISLTEAGKMDSYLSDFSDDL--------LVGHWHGDMP--------GLPDKAQVLAIS-QGCP---RQIIKFGP-KQYAF  176 (236)
T ss_dssp             EEECTTGGGCGGGTTSCSEE--------EEEEEEEEEC--------CCCTTCEEEEEC-SSCS---CSEEEEET-TEEEE
T ss_pred             EEEccCcccChHHhcCCCCc--------EEEEecCCcc--------cCCChheEEEEC-CCCC---EEEEEECC-CEEEE
Confidence            65544333577888877643        5899999763        789999999997 5555   66887765 89999


Q ss_pred             cccCCcC
Q psy14047        272 QFHPEKN  278 (350)
Q Consensus       272 QfHPE~~  278 (350)
                      |||||++
T Consensus       177 QfHPE~~  183 (236)
T 3l7n_A          177 QCHLEFT  183 (236)
T ss_dssp             SSBSSCC
T ss_pred             EeCCCCC
Confidence            9999975

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.90  E-value=7e-24  Score=185.49  Aligned_cols=182  Identities=16%  Similarity=0.171  Sum_probs=118.0

Q ss_pred             CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047          6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK   85 (350)
Q Consensus         6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~   85 (350)
                      ||+|||++.+..              ..+|+++|+++|+.++.++...       .++.+|||+||||.....       
T Consensus         2 ~p~Igi~~~~~~--------------~~~~~~~l~~~G~~~~~~~~~~-------~l~~~dglil~GG~~~~~-------   53 (191)
T 2ywd_A            2 RGVVGVLALQGD--------------FREHKEALKRLGIEAKEVRKKE-------HLEGLKALIVPGGESTTI-------   53 (191)
T ss_dssp             -CCEEEECSSSC--------------HHHHHHHHHTTTCCCEEECSGG-------GGTTCSEEEECSSCHHHH-------
T ss_pred             CcEEEEEecCCc--------------hHHHHHHHHHCCCEEEEeCChh-------hhccCCEEEECCCChhhh-------
Confidence            899999987532              2578999999999999887532       256799999999952110       


Q ss_pred             cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047         86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG  165 (350)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G  165 (350)
                                                                      +.+... ..+.+.++++.++++ +||||||+|
T Consensus        54 ------------------------------------------------~~~~~~-~~~~~~i~~~~~~~~-~PilGiC~G   83 (191)
T 2ywd_A           54 ------------------------------------------------GKLARE-YGIEDEVRKRVEEGS-LALFGTCAG   83 (191)
T ss_dssp             ------------------------------------------------HHHHHH-TTHHHHHHHHHHTTC-CEEEEETHH
T ss_pred             ------------------------------------------------HHhhhh-hhHHHHHHHHHHCCC-CeEEEECHH
Confidence                                                            011000 024456666665432 899999999


Q ss_pred             HHHHHHHhcC-ccccCCccCceeeeeeceeecCCCC------CcccccCCchhHHhhcccceEEEeecceeecCCCcccc
Q psy14047        166 FQLLLYTSNN-ENELRTRCDCFYENLALEFMPSFRQ------SLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG  238 (350)
Q Consensus       166 ~QlLa~a~Gg-~v~~~~~~~~~~~~~~i~~~~~~~~------~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~  238 (350)
                      ||+|+.++|| ++.  ...+.......  .......      +..+..+         ....++++|++.+.       .
T Consensus        84 ~Q~l~~~~gg~~~~--~~lg~~~~~~~--~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~Hs~~v~-------~  143 (191)
T 2ywd_A           84 AIWLAKEIVGYPEQ--PRLGVLEAWVE--RNAFGRQVESFEEDLEVEGL---------GSFHGVFIRAPVFR-------R  143 (191)
T ss_dssp             HHHHEEEETTCTTC--CCCCCEEEEEE--TTCSCCSSSEEEEEEEETTT---------EEEEEEEESCCEEE-------E
T ss_pred             HHHHHHHhCCCCCC--ccccccceEEE--cCCcCCccccccccccccCC---------CceeEEEEccccee-------c
Confidence            9999999998 531  21111111000  0000000      1112211         12357889999886       6


Q ss_pred             ccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        239 LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       239 L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      +|++++++|++  + +  ++++++++  +++|+|||||++.                 .. .++++|++.|+
T Consensus       144 l~~~~~~~a~~--~-~--~~~a~~~~--~~~gvQfHPE~~~-----------------~~-~l~~~f~~~~~  190 (191)
T 2ywd_A          144 LGEGVEVLARL--G-D--LPVLVRQG--KVLASSFHPELTE-----------------DP-RLHRYFLELAG  190 (191)
T ss_dssp             ECTTCEEEEEE--T-T--EEEEEEET--TEEEESSCGGGSS-----------------CC-HHHHHHHHHHT
T ss_pred             cCCCcEEEEEE--C-C--EEEEEEEC--CEEEEEeCCCCCC-----------------Cc-HHHHHHHHHhc
Confidence            88999999995  3 3  58999986  4999999999653                 12 79999999885

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.90  E-value=7.2e-24  Score=187.09  Aligned_cols=133  Identities=20%  Similarity=0.253  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHHhc--CccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccce
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSN--NENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHI  220 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G--g~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~  220 (350)
                      +.++++++.+++  +||||||+|||+|+.++|  |+...+...+......+...+....++.++...+.       ....
T Consensus        66 ~~~~i~~~~~~~--~PilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g~~~l~~~~~~-------~~~~  136 (201)
T 1gpw_B           66 LIDFVRKHVEDE--RYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTF-------PNGY  136 (201)
T ss_dssp             CHHHHHHHHHTT--CEEEEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEEEEEEEESSSS-------CCEE
T ss_pred             HHHHHHHHHHcC--CeEEEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCcccceeeEeccCC-------CCCe
Confidence            456677776666  999999999999999987  44222322222211111000000112333322221       1236


Q ss_pred             EEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHH
Q psy14047        221 THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY  300 (350)
Q Consensus       221 v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~  300 (350)
                      ++++|++++.       .+  +++++|++ ++++. .++++++++ ++||+|||||++.                ..+..
T Consensus       137 v~~~H~~~v~-------~~--~~~vla~s-~~~g~-~~~a~~~~~-~i~gvQfHPE~~~----------------~~~~~  188 (201)
T 1gpw_B          137 YYFVHTYRAV-------CE--EEHVLGTT-EYDGE-IFPSAVRKG-RILGFQFHPEKSS----------------KIGRK  188 (201)
T ss_dssp             EEEEESEEEE-------EC--GGGEEEEE-EETTE-EEEEEEEET-TEEEESSCGGGSH----------------HHHHH
T ss_pred             EEEECcceec-------cC--CCEEEEEE-ccCCc-eEEEEEECC-CEEEEECCCcccC----------------HhHHH
Confidence            8999999996       44  68999997 44121 378888776 8999999999772                24789


Q ss_pred             HHHHHHHHHHcC
Q psy14047        301 FFDWLVSQASGS  312 (350)
Q Consensus       301 i~~~Fv~~~~~~  312 (350)
                      ++++|++.|+.+
T Consensus       189 l~~~f~~~~~~~  200 (201)
T 1gpw_B          189 LLEKVIECSLSR  200 (201)
T ss_dssp             HHHHHHHHSSCC
T ss_pred             HHHHHHHHhhcC
Confidence            999999988654

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.89  E-value=1.2e-23  Score=195.78  Aligned_cols=144  Identities=16%  Similarity=0.213  Sum_probs=92.9

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc-----------------e----------eeeeeceee
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC-----------------F----------YENLALEFM  195 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~-----------------~----------~~~~~i~~~  195 (350)
                      +.++++++.+++  +||||||+|||+|+.++||++..+.....                 +          ....++...
T Consensus       108 ~~~~i~~~~~~~--~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~~g~~~v~~~  185 (289)
T 2v4u_A          108 KLQAISWARTKK--IPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFK  185 (289)
T ss_dssp             HHHHHHHHHHTT--CCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCEEEEEEEEES
T ss_pred             HHHHHHHHHHcC--CcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccccceEEEEEe
Confidence            456667766666  99999999999999999998732121110                 0          001122111


Q ss_pred             cCCCCCcccccCCchhHHhhcccceE--EEeecceeecCCCcccccc-ccceEEEEeecCCCceEEEEEEcCCccEE-EE
Q psy14047        196 PSFRQSLLYSRAPIHVLQELATSHIT--HNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFISSVEHKVYPFA-GI  271 (350)
Q Consensus       196 ~~~~~~~lf~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gv  271 (350)
                        ..++.+++.++.        ...+  ++.|++.+.++.+.  .|| ++++++|++ +++.  ++++|+++++|++ |+
T Consensus       186 --~~~s~l~~~~~~--------~~~v~~~H~H~y~vn~~~v~--~l~~~g~~v~A~s-~dg~--~ieaie~~~~p~~lGv  250 (289)
T 2v4u_A          186 --TENSILRKLYGD--------VPFIEERHRHRFEVNPNLIK--QFEQNDLSFVGQD-VDGD--RMEIIELANHPYFVGV  250 (289)
T ss_dssp             --CSCCHHHHHTTS--------CSEEEEEEEECEEECGGGSG--GGTTSSEEEEEEE-TTSC--SEEEEEESSSSCEEEE
T ss_pred             --cCCCHHHHhcCC--------CceEEEecccccccCHHHHH--hcccCCeEEEEEc-CCCC--eEEEEEcCCCCeEEEE
Confidence              012333333222        1234  44456666654332  688 999999997 5553  3889999988865 99


Q ss_pred             cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCC
Q psy14047        272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFE  317 (350)
Q Consensus       272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~  317 (350)
                      |||||+...+.              ..+.+|.+|+++|+++.+.|.
T Consensus       251 QfHPE~~~~~~--------------~~~~lf~~Fv~~~~~~~~~~~  282 (289)
T 2v4u_A          251 QFHPEFSSRPM--------------KPSPPYLGLLLAATGNLNAYL  282 (289)
T ss_dssp             SSBGGGGCBTT--------------BCCHHHHHHHHHHHTCHHHHH
T ss_pred             ECCCCCCCCCC--------------chHHHHHHHHHHHHhhhhhhh
Confidence            99999875321              135899999999998877654

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.89  E-value=7.4e-23  Score=181.93  Aligned_cols=205  Identities=17%  Similarity=0.092  Sum_probs=128.5

Q ss_pred             CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047          6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK   85 (350)
Q Consensus         6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~   85 (350)
                      .+.|+|+.....            ....+++++|+++|+.+..++..+       .++.+|||++|||. +.... .   
T Consensus         2 ~~~i~il~~~~~------------~~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~-~~~~~-~---   57 (213)
T 3d54_D            2 KPRACVVVYPGS------------NCDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGF-SYGDY-L---   57 (213)
T ss_dssp             CCEEEEECCTTE------------EEHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEEC-GGGGC-S---
T ss_pred             CcEEEEEEcCCC------------CccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCC-chhhh-h---
Confidence            367899875532            111356899999999999998652       25789999999997 32100 0   


Q ss_pred             cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047         86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG  165 (350)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G  165 (350)
                                  .+.                                  .+... ..+.++++++.+++  +||||||+|
T Consensus        58 ------------~~~----------------------------------~~~~~-~~~~~~l~~~~~~~--~pilgIC~G   88 (213)
T 3d54_D           58 ------------RPG----------------------------------AVAAR-EKIAFEIAKAAERG--KLIMGICNG   88 (213)
T ss_dssp             ------------STT----------------------------------HHHHT-STTHHHHHHHHHHT--CEEEECHHH
T ss_pred             ------------ccc----------------------------------ccccc-HHHHHHHHHHHHCC--CEEEEECHH
Confidence                        000                                  00000 01445566666666  999999999


Q ss_pred             HHHHHHH--hcCccccCCc-cCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccc-cc
Q psy14047        166 FQLLLYT--SNNENELRTR-CDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL-AK  241 (350)
Q Consensus       166 ~QlLa~a--~Gg~v~~~~~-~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~  241 (350)
                      +|+|+.+  ++|++. ... ...+....++....  ..+++++.++...      ...++.+|+++..       .+ ++
T Consensus        89 ~qlLa~aGll~g~v~-~~~~~~~~~g~~~v~~~~--~~~~l~~~~~~~~------~~~~~~~H~~~s~-------~~~~~  152 (213)
T 3d54_D           89 FQILIEMGLLKGALL-QNSSGKFICKWVDLIVEN--NDTPFTNAFEKGE------KIRIPIAHGFGRY-------VKIDD  152 (213)
T ss_dssp             HHHHHHHTSSCSEEE-CCSSSSCBCCEEEEEECC--CSSTTSTTSCTTC------EEEEECCBSSCEE-------ECSSC
T ss_pred             HHHHHHcCCCCCCee-cCCCCceEeeeEEEEeCC--CCCceeeccCCCC------EEEEEeecCceEE-------EecCC
Confidence            9999999  888764 222 11233334444321  3567887765411      1134458854211       22 46


Q ss_pred             cceEEEEeecC--CCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        242 EWKVLSTNSNN--RGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       242 ~~~vla~s~~~--~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      +++++|++ ++  +....++++++++.++||+|||||++...|...          ..+..+|++|++.|+
T Consensus       153 ~~~~~a~~-~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~----------~~g~~l~~~f~~~~~  212 (213)
T 3d54_D          153 VNVVLRYV-KDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGG----------EDGKKVFQSILNYLK  212 (213)
T ss_dssp             CEEEEEES-SCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTC----------STTSHHHHHHHHHCC
T ss_pred             CcEEEEEc-CCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhc----------CccHHHHHHHHHHhh
Confidence            78999986 43  210238899887778999999999987554321          236789999999875

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.89  E-value=1.7e-23  Score=215.09  Aligned_cols=174  Identities=18%  Similarity=0.266  Sum_probs=123.7

Q ss_pred             HHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHH
Q psy14047         34 SYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEK  113 (350)
Q Consensus        34 ~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (350)
                      ...+.|+++|+.+.++|++.+.+++..  ..+||||||||+.++....                                
T Consensus        44 liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s~~~~~--------------------------------   89 (697)
T 2vxo_A           44 VIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSVYAED--------------------------------   89 (697)
T ss_dssp             HHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC---------------------------------------
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCcccCcc--------------------------------
Confidence            356899999999999999887776654  6799999999996543000                                


Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeece
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE  193 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~  193 (350)
                                    .+.  ..          +   +..+.|  +||||||+|||+|+.++||++. ....... +..++.
T Consensus        90 --------------~~~--~~----------~---~i~~~g--~PvLGIC~G~QlLa~~lGG~v~-~~~~~e~-G~~~v~  136 (697)
T 2vxo_A           90 --------------APW--FD----------P---AIFTIG--KPVLGICYGMQMMNKVFGGTVH-KKSVRED-GVFNIS  136 (697)
T ss_dssp             --------------CCC--CC----------G---GGTTSS--CCEEEEEHHHHHHHHHTTCCBC-C--------CEEEE
T ss_pred             --------------chh--HH----------H---HHHhCC--CCEEEECHHHHHHHHHhCCeEe-ecCCCcc-ceEEEE
Confidence                          000  00          0   112344  9999999999999999999975 2222222 234444


Q ss_pred             eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047        194 FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQF  273 (350)
Q Consensus       194 ~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf  273 (350)
                      +.   ..+.||++++..        ..++++|++++.       .+|++++++|++  ++   .++++++++.++||+||
T Consensus       137 ~~---~~~~Lf~~l~~~--------~~v~~~H~~~V~-------~lp~g~~vlA~s--~~---~i~ai~~~~~~i~GvQF  193 (697)
T 2vxo_A          137 VD---NTCSLFRGLQKE--------EVVLLTHGDSVD-------KVADGFKVVARS--GN---IVAGIANESKKLYGAQF  193 (697)
T ss_dssp             EC---TTSGGGTTCCSE--------EEECCCSSCCBS-------SCCTTCEEEEEE--TT---EEEEEEETTTTEEEESS
T ss_pred             ec---CCChhhhcCCcc--------Ccceeeccccee-------cCCCCeEEEEEe--CC---ceEEEEeCCCCEEEEEe
Confidence            32   356788887653        368999999997       799999999996  33   59999998889999999


Q ss_pred             cCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcC
Q psy14047        274 HPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGS  312 (350)
Q Consensus       274 HPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~  312 (350)
                      |||++..+               .+..++++|+ +.|...
T Consensus       194 HPE~~~t~---------------~g~~ll~nFl~~i~~~~  218 (697)
T 2vxo_A          194 HPEVGLTE---------------NGKVILKNFLYDIAGCS  218 (697)
T ss_dssp             CTTSSSST---------------THHHHHHHHHTTTTCCC
T ss_pred             cccCCCCc---------------cchhhhhhhhhcccccc
Confidence            99987532               3788999999 777654

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.89  E-value=6e-23  Score=209.32  Aligned_cols=181  Identities=12%  Similarity=0.086  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047         31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK  110 (350)
Q Consensus        31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (350)
                      ....++++++++|+.+.+++++.+.+     +..+|||||+||+.+..  +                             
T Consensus       458 f~~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg~p~--d-----------------------------  501 (645)
T 3r75_A          458 FTAMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPGDPS--D-----------------------------  501 (645)
T ss_dssp             HHHHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSSCTT--C-----------------------------
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCCChh--h-----------------------------
Confidence            34678899999999999999876532     46789999999986543  1                             


Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL  190 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~  190 (350)
                                           +...+..   .+.++++++.+.+  +||||||+|||+|+.++||++. ....+.++...
T Consensus       502 ---------------------~~~p~i~---~~~~lI~~a~~~~--iPiLGIClG~QlLa~alGG~V~-~~~~~~~G~~~  554 (645)
T 3r75_A          502 ---------------------AGDPRIA---RLYAWLRHLIDEG--KPFMAVCLSHQILNAILGIPLV-RREVPNQGIQV  554 (645)
T ss_dssp             ---------------------TTSHHHH---HHHHHHHHHHHHT--CCEEEETHHHHHHHHHTTCCEE-EEEEEEEEEEE
T ss_pred             ---------------------hhhhhHH---HHHHHHHHHHHCC--CCEEEECHHHHHHHHHhCCEEE-cCCCcccccce
Confidence                                 0112222   1344455544445  9999999999999999999975 33334444444


Q ss_pred             eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ++..    .++.++...+..+        .++.+|++.+.       .+|++++++|++ +++.   ++++++++  +||
T Consensus       555 ~i~~----~~~~l~~~~~~~~--------~v~~~h~~~~~-------~lp~g~~v~A~s-~dg~---i~Ai~~~~--~~G  609 (645)
T 3r75_A          555 EIDL----FGQRERVGFYNTY--------VAQTVRDEMDV-------DGVGTVAISRDP-RTGE---VHALRGPT--FSS  609 (645)
T ss_dssp             EEEE----TTEEEEEEEEEEE--------EEBCSCSEEEE-------TTTEEEEEEECT-TTCB---EEEEEETT--EEE
T ss_pred             EEee----ecCcceecCCCcE--------EEEEehhhccc-------cCCCCeEEEEEc-CCCc---EEEEEcCC--EEE
Confidence            4432    1334444433322        34445555443       589999999996 5554   99999875  799


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCC
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHH  314 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~  314 (350)
                      +|||||+..++               .+..|+++|++.+++...
T Consensus       610 VQFHPE~~~t~---------------~G~~Ll~nFl~~~~~~~~  638 (645)
T 3r75_A          610 MQFHAESVLTV---------------DGPRILGEAITHAIRREK  638 (645)
T ss_dssp             ESSBTTSTTCT---------------THHHHHHHHHHHHTTTTC
T ss_pred             EEeCCeecCCc---------------chHHHHHHHHHHHHhccc
Confidence            99999987542               378999999999976543

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.89  E-value=5.6e-23  Score=184.85  Aligned_cols=197  Identities=21%  Similarity=0.251  Sum_probs=121.7

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHc---CCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEAS---GARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD   81 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~---G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~   81 (350)
                      .+++|||++....              ..+|+++|+++   |+.+++++.   .+    .++.+||||||||..++.   
T Consensus         2 ~~~~I~Il~~~~~--------------~~~~~~~l~~~~~~G~~~~~~~~---~~----~l~~~dglil~GG~~~~~---   57 (227)
T 2abw_A            2 SEITIGVLSLQGD--------------FEPHINHFIKLQIPSLNIIQVRN---VH----DLGLCDGLVIPGGESTTV---   57 (227)
T ss_dssp             CCEEEEEECTTSC--------------CHHHHHHHHTTCCTTEEEEEECS---HH----HHHTCSEEEECCSCHHHH---
T ss_pred             CCcEEEEEeCCCC--------------cHHHHHHHHHhccCCeEEEEEcC---cc----ccccCCEEEECCCcHHHH---
Confidence            5789999986532              15789999999   999888874   22    256799999999974332   


Q ss_pred             cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhC-CCCccEE
Q psy14047         82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNEN-RDYFPIM  160 (350)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~-g~~~PIl  160 (350)
                                        ..+.                             .++.  .  .+.+.++++.++ |  +|||
T Consensus        58 ------------------~~~~-----------------------------~~d~--~--~~~~~i~~~~~~~g--~Pil   84 (227)
T 2abw_A           58 ------------------RRCC-----------------------------AYEN--D--TLYNALVHFIHVLK--KPIW   84 (227)
T ss_dssp             ------------------HHHT-----------------------------THHH--H--HHHHHHHHHHHTSC--CCEE
T ss_pred             ------------------HHHH-----------------------------HHhH--H--HHHHHHHHHHHhcC--CEEE
Confidence                              0000                             0000  1  256777888777 7  9999


Q ss_pred             EehHHHHHHHHHhcCccccCCc---cCceeeeeeceeecCC--C------CCcccccCCchhHHhhcccceEEEeeccee
Q psy14047        161 GICLGFQLLLYTSNNENELRTR---CDCFYENLALEFMPSF--R------QSLLYSRAPIHVLQELATSHITHNWHMWCI  229 (350)
Q Consensus       161 GIC~G~QlLa~a~Gg~v~~~~~---~~~~~~~~~i~~~~~~--~------~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v  229 (350)
                      |||+|||+|+.++||.+. ...   ...-+ ..++......  .      ....+..+..    ..+.....++.|++.+
T Consensus        85 GIC~G~QlL~~~~gg~~~-~~~~~~~~~lG-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~g~~~~~~~~h~~~v  158 (227)
T 2abw_A           85 GTCAGCILLSKNVENIKL-YSNFGNKFSFG-GLDITICRNFYGSQNDSFICSLNIISDSS----AFKKDLTAACIRAPYI  158 (227)
T ss_dssp             EETHHHHHTEEEEECCCS-CCTTGGGSCCC-CEEEEEECCC----CCEEEEECEECCCCT----TCCTTCEEEEESCCEE
T ss_pred             EECHHHHHHHHHhcCCcc-ccccccccccC-ceeEEEEecCCCccccccccccccccccc----cCCCceeEEEEEcceE
Confidence            999999999999999742 110   11111 1111111000  0      0001111100    0011234577888888


Q ss_pred             ecCCCccccc-cccceEEEEeecCC--CceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047        230 TPSNFTDNGL-AKEWKVLSTNSNNR--GLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV  306 (350)
Q Consensus       230 ~~~~~~~~~L-~~~~~vla~s~~~~--~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv  306 (350)
                      .       .+ |++++++|++ +.+  +...+++++..  +++|+|||||++.                  ...++++|+
T Consensus       159 ~-------~~~~~~~~vla~~-~~~~~g~~~~~a~~~~--~v~gvQfHPE~~~------------------~~~l~~~Fl  210 (227)
T 2abw_A          159 R-------EILSDEVKVLATF-SHESYGPNIIAAVEQN--NCLGTVFHPELLP------------------HTAFQQYFY  210 (227)
T ss_dssp             E-------EECCTTCEEEEEE-EETTTEEEEEEEEEET--TEEEESSCGGGSS------------------CCHHHHHHH
T ss_pred             e-------ecCCCCcEEEEEc-ccccCCCCceEEEEEC--CEEEEEECCeeCC------------------CcHHHHHHH
Confidence            6       66 8999999996 310  12257888864  6999999999763                  137899999


Q ss_pred             HHHHcC
Q psy14047        307 SQASGS  312 (350)
Q Consensus       307 ~~~~~~  312 (350)
                      +.|++.
T Consensus       211 ~~~~~~  216 (227)
T 2abw_A          211 EKVKNY  216 (227)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998643

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.88  E-value=5.5e-23  Score=183.96  Aligned_cols=189  Identities=20%  Similarity=0.255  Sum_probs=120.2

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY   83 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~   83 (350)
                      +.++.|+|+....            .|  .+++++|+++|+.++.++..+       .++.+|||+||||+....     
T Consensus        21 ~~~~~I~il~~~~------------~~--~~~~~~l~~~G~~~~~~~~~~-------~l~~~Dglil~GG~~~~~-----   74 (219)
T 1q7r_A           21 QSNMKIGVLGLQG------------AV--REHVRAIEACGAEAVIVKKSE-------QLEGLDGLVLPGGESTTM-----   74 (219)
T ss_dssp             CCCCEEEEESCGG------------GC--HHHHHHHHHTTCEEEEECSGG-------GGTTCSEEEECCCCHHHH-----
T ss_pred             CCCCEEEEEeCCC------------Cc--HHHHHHHHHCCCEEEEECCHH-------HHhhCCEEEECCCChHHH-----
Confidence            4568899996422            12  346799999999999888521       257899999999973221     


Q ss_pred             cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047         84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC  163 (350)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC  163 (350)
                                                                        +.+.+. ..+.++++++.+++  +||||||
T Consensus        75 --------------------------------------------------~~~~~~-~~~~~~i~~~~~~~--~PilGIC  101 (219)
T 1q7r_A           75 --------------------------------------------------RRLIDR-YGLMEPLKQFAAAG--KPMFGTC  101 (219)
T ss_dssp             --------------------------------------------------HHHHHH-TTCHHHHHHHHHTT--CCEEEET
T ss_pred             --------------------------------------------------HHHhhh-hHHHHHHHHHHHcC--CeEEEEC
Confidence                                                              011100 01346667776776  9999999


Q ss_pred             HHHHHHHHHhcCccc-cCCccCceeeeeeceeecCC-CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccc
Q psy14047        164 LGFQLLLYTSNNENE-LRTRCDCFYENLALEFMPSF-RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK  241 (350)
Q Consensus       164 ~G~QlLa~a~Gg~v~-~~~~~~~~~~~~~i~~~~~~-~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~  241 (350)
                      +|||+|+.++||++. .++..+......+....... ..+..+.++        +....++++|++.+.       .+|+
T Consensus       102 ~G~QlL~~~~gg~~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~g~--------g~~~~~~~~h~~~v~-------~l~~  166 (219)
T 1q7r_A          102 AGLILLAKRIVGYDEPHLGLMDITVERNSFGRQRESFEAELSIKGV--------GDGFVGVFIRAPHIV-------EAGD  166 (219)
T ss_dssp             THHHHHEEEEESSCCCCCCCEEEEEECHHHHCCCCCEEEEEEETTT--------EEEEEEEESSCCEEE-------EECT
T ss_pred             HHHHHHHHHhCCCCcCCcCccceEEEecCCCccccceecCcccCCC--------CCceEEEEEecceee-------ccCC
Confidence            999999999999752 11111111100000000000 001112222        122357888999887       7899


Q ss_pred             cceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        242 EWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       242 ~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +++++|++  ++   .+++++.+  +++|+|||||.+.                  ...++++|++.|++
T Consensus       167 ~~~v~a~s--dg---~~ea~~~~--~i~GvQfHPE~~~------------------~~~l~~~fl~~~~~  211 (219)
T 1q7r_A          167 GVDVLATY--ND---RIVAARQG--QFLGCSFHPELTD------------------DHRLMQYFLNMVKE  211 (219)
T ss_dssp             TCEEEEEE--TT---EEEEEEET--TEEEESSCGGGSS------------------CCHHHHHHHHHHHH
T ss_pred             CcEEEEEc--CC---EEEEEEEC--CEEEEEECcccCC------------------CHHHHHHHHHHHHH
Confidence            99999995  33   48899884  7999999999752                  13789999999875

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.87  E-value=1.1e-21  Score=195.38  Aligned_cols=150  Identities=21%  Similarity=0.268  Sum_probs=87.9

Q ss_pred             HHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc----eeeeeec-eeecC----C-CCCccc------ccCC
Q psy14047        145 KIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC----FYENLAL-EFMPS----F-RQSLLY------SRAP  208 (350)
Q Consensus       145 ~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~----~~~~~~i-~~~~~----~-~~~~lf------~~~~  208 (350)
                      +.++.+.+++  +|+||||+|||+|+.++||++..+.....    .+...|+ .....    . .+..++      ...+
T Consensus       375 ~~ir~a~e~~--iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~  452 (550)
T 1vco_A          375 RAAQYARERK--IPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKP  452 (550)
T ss_dssp             HHHHHHHHTT--CCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECT
T ss_pred             HHHHHHHHCC--CcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEcc
Confidence            3444444444  99999999999999999998753332210    0001111 11000    0 011110      0013


Q ss_pred             chhHHhhcccce--EEEeecceeecCCCcccccc-ccceEEEEeecCCC---ceEEEEEEcCCccEE-EEcccCCcCCcc
Q psy14047        209 IHVLQELATSHI--THNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRG---LKFISSVEHKVYPFA-GIQFHPEKNAYE  281 (350)
Q Consensus       209 ~~~~~~~~~~~~--v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~---~e~v~ai~~~~~~i~-gvQfHPE~~~~~  281 (350)
                      .++...+.....  ..+.|.|.|...  ....++ ++++++|++ .++.   ..++++++++++|+| |+|||||+...+
T Consensus       453 ~s~l~~iy~~~~v~e~h~H~Y~Vns~--~~~~l~~~gl~v~a~s-~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p  529 (550)
T 1vco_A          453 GTLLHRLYGKEEVLERHRHRYEVNPL--YVDGLERAGLVVSATT-PGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRP  529 (550)
T ss_dssp             TSHHHHHHCCSEEEEEEEESEEECHH--HHHHHHHHTEEEEEEC-CCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBT
T ss_pred             CchhhHhcCCceeeeeccceEEEchH--HhhccccCCeEEEEEe-CCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCC
Confidence            333333332333  356677766422  111455 789999997 5420   125999999999988 999999987542


Q ss_pred             ccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047        282 WKLTQDNPHTRIAIENARYFFDWLVSQASGSH  313 (350)
Q Consensus       282 ~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~  313 (350)
                      .              .+..+|+.|+++|++..
T Consensus       530 ~--------------~g~~LF~~Fv~aa~~~~  547 (550)
T 1vco_A          530 M--------------RPSPPFVGFVEAALAYQ  547 (550)
T ss_dssp             T--------------BCCHHHHHHHHHHHHHT
T ss_pred             C--------------ChHHHHHHHHHHHHhhc
Confidence            1              25689999999997654

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.86  E-value=1.5e-21  Score=171.41  Aligned_cols=174  Identities=20%  Similarity=0.257  Sum_probs=108.9

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .+++++|+++|+.++.++..+       .++.+|||++|||+.+..                                  
T Consensus        14 ~~~~~~l~~~g~~~~~~~~~~-------~l~~~d~iil~GG~~~~~----------------------------------   52 (196)
T 2nv0_A           14 REHIHAIEACGAAGLVVKRPE-------QLNEVDGLILPGGESTTM----------------------------------   52 (196)
T ss_dssp             HHHHHHHHHTTCEEEEECSGG-------GGGGCSEEEECCSCHHHH----------------------------------
T ss_pred             HHHHHHHHHCCCEEEEeCChH-------HHhhCCEEEECCCChhhH----------------------------------
Confidence            456789999999988886521       156789999999973321                                  


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccc-cCCccCceeeeee
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENE-LRTRCDCFYENLA  191 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~-~~~~~~~~~~~~~  191 (350)
                                           +.+.+. ..+.++++++.++|  +||||||+|+|+|+.++||++. .++..+......+
T Consensus        53 ---------------------~~~~~~-~~~~~~i~~~~~~~--~pilgIC~G~q~l~~~~gg~~~~~lg~~~~~~~~~~  108 (196)
T 2nv0_A           53 ---------------------RRLIDT-YQFMEPLREFAAQG--KPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNS  108 (196)
T ss_dssp             ---------------------HHHHHH-TTCHHHHHHHHHTT--CCEEEETHHHHHHSBCCC----CCCCCSCEEEECCC
T ss_pred             ---------------------HHHhhh-HHHHHHHHHHHHCC--CcEEEECHHHHHHHHHhcCCCCCcccCCceeEeccC
Confidence                                 011100 01346667776676  9999999999999999999742 1121111111000


Q ss_pred             ceeecC-CCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        192 LEFMPS-FRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       192 i~~~~~-~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ...... ...+.++.++        +....++++|++.+.       .+|++++++|++  ++   .+++++.+  +++|
T Consensus       109 ~g~~~~~~~~~~~~~~~--------g~~~~~~~~h~~~v~-------~~~~~~~v~a~~--d~---~~~a~~~~--~~~g  166 (196)
T 2nv0_A          109 FGRQVDSFEADLTIKGL--------DEPFTGVFIRAPHIL-------EAGENVEVLSEH--NG---RIVAAKQG--QFLG  166 (196)
T ss_dssp             SCTTTSEEEEEECCTTC--------SSCEEEEEESCCEEE-------EECTTCEEEEEE--TT---EEEEEEET--TEEE
T ss_pred             CCcccccccCCcccccC--------CCceEEEEEecceec-------ccCCCcEEEEEE--CC---EEEEEEEC--CEEE
Confidence            000000 0001122222        223457889999986       688999999995  33   47888874  7999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      +|||||.+.                  ...++++|++.|++
T Consensus       167 vQfHPE~~~------------------~~~l~~~fl~~~~~  189 (196)
T 2nv0_A          167 CSFHPELTE------------------DHRVTQLFVEMVEE  189 (196)
T ss_dssp             ESSCTTSSS------------------CCHHHHHHHHHHHH
T ss_pred             EEECCccCC------------------chHHHHHHHHHHHh
Confidence            999999753                  13789999999875

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.85  E-value=1.6e-21  Score=193.96  Aligned_cols=147  Identities=17%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             HHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc----eeeeeec-eee----------cCC-----CCCcc-
Q psy14047        145 KIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC----FYENLAL-EFM----------PSF-----RQSLL-  203 (350)
Q Consensus       145 ~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~----~~~~~~i-~~~----------~~~-----~~~~l-  203 (350)
                      +.++.+.+++  +|+||||+|||+|+.++||++..+.....    .+...|+ .+.          ...     .+..+ 
T Consensus       363 ~~i~~a~~~~--~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmr  440 (545)
T 1s1m_A          363 TTARFARENN--IPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMR  440 (545)
T ss_dssp             HHHHHHHHTT--CCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCE
T ss_pred             HHHHHHHHCC--CcEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCcccc
Confidence            4445544455  99999999999999999998753322110    0111121 110          000     00000 


Q ss_pred             ---c--ccCCchhHHhhcccce--EEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEE-EEccc
Q psy14047        204 ---Y--SRAPIHVLQELATSHI--THNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFH  274 (350)
Q Consensus       204 ---f--~~~~~~~~~~~~~~~~--v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfH  274 (350)
                         +  .-.+.++...+.....  ..+.|.+.|.....  ..+ +++++++|+| .++.  .+++++++++|+| |+|||
T Consensus       441 lG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~--~~l~~~gl~v~a~s-~dg~--~VEaie~~~~p~flGVQFH  515 (545)
T 1s1m_A          441 LGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLL--KQIEDAGLRVAGRS-GDDQ--LVEIIEVPNHPWFVACQFH  515 (545)
T ss_dssp             EEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHH--HHHHHTTCEEEEEC-SSSC--CEEEEECTTSSSEEEESSC
T ss_pred             ccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHh--hhcccCCeEEEEEC-CCCC--ceEEEEeCCCCEEEEEeCC
Confidence               0  0012223222322233  35566666642211  145 4899999997 6653  4899999999977 99999


Q ss_pred             CCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        275 PEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       275 PE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      ||+...+.              .++.||+.|+++|++.
T Consensus       516 PE~~~~p~--------------~g~~LF~~Fv~aa~~~  539 (545)
T 1s1m_A          516 PEFTSTPR--------------DGHPLFAGFVKAASEF  539 (545)
T ss_dssp             GGGTCCTT--------------TCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCC--------------ChHHHHHHHHHHHHHH
Confidence            99875432              2568999999999753

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=3.6e-21  Score=170.80  Aligned_cols=182  Identities=17%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047          4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY   83 (350)
Q Consensus         4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~   83 (350)
                      ..+..|+|+....              -..+++++|+++|+.++.++..+   .    ++.+|||+||||....      
T Consensus        18 ~~~~~I~ii~~~~--------------~~~~~~~~l~~~g~~~~~~~~~~---~----l~~~d~iil~GG~~~~------   70 (208)
T 2iss_D           18 GSHMKIGVLGVQG--------------DVREHVEALHKLGVETLIVKLPE---Q----LDMVDGLILPGGESTT------   70 (208)
T ss_dssp             --CCEEEEECSSS--------------CHHHHHHHHHHTTCEEEEECSGG---G----GGGCSEEEECSSCHHH------
T ss_pred             CCCcEEEEEECCC--------------chHHHHHHHHHCCCEEEEeCChH---H----HhhCCEEEECCCcHHH------
Confidence            3456799984311              12557889999999988886432   1    5679999999985222      


Q ss_pred             cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047         84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC  163 (350)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC  163 (350)
                                     +.++.                                +..   .+.++++++.++|  +||||||
T Consensus        71 ---------------~~~~~--------------------------------~~~---~~~~~i~~~~~~g--~PilGIC   98 (208)
T 2iss_D           71 ---------------MIRIL--------------------------------KEM---DMDEKLVERINNG--LPVFATC   98 (208)
T ss_dssp             ---------------HHHHH--------------------------------HHT---TCHHHHHHHHHTT--CCEEEET
T ss_pred             ---------------HHhhh--------------------------------hhh---hHHHHHHHHHHCC--CeEEEEC
Confidence                           11110                                000   1345667766666  9999999


Q ss_pred             HHHHHHHHHhcCccccCCccCceeeeeeceeecCC--C------CCcccccCCchhHHhhcccceEEEeecceeecCCCc
Q psy14047        164 LGFQLLLYTSNNENELRTRCDCFYENLALEFMPSF--R------QSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFT  235 (350)
Q Consensus       164 ~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~--~------~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~  235 (350)
                      +|||+|+.++||+.  ....+.    .+.......  .      .+..+.+++.       ++..++++|++.+.     
T Consensus        99 ~G~QlL~~~~gg~~--~~~lg~----~~~~v~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~-----  160 (208)
T 2iss_D           99 AGVILLAKRIKNYS--QEKLGV----LDITVERNAYGRQVESFETFVEIPAVGK-------DPFRAIFIRAPRIV-----  160 (208)
T ss_dssp             HHHHHHEEEEC-----CCCCCC----EEEEEETTTTCSGGGCEEEEECCGGGCS-------SCEEEEESSCCEEE-----
T ss_pred             HHHHHHHHHcCCCC--CCCccc----cceEEEecCCCcccccccCCcccccCCC-------CceEEEEEeCcccc-----
Confidence            99999999999853  111111    111111100  0      0111222210       23468889999886     


Q ss_pred             cccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047        236 DNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA  309 (350)
Q Consensus       236 ~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~  309 (350)
                        .+|++++++|++  + +  .+++++..  +++|+|||||.+..                  ..++++|++.|
T Consensus       161 --~~~~~~~v~a~~--d-~--~~~a~~~~--~i~GvQfHPE~~~~------------------~~l~~~fl~~~  207 (208)
T 2iss_D          161 --ETGKNVEILATY--D-Y--DPVLVKEG--NILACTFHPELTDD------------------LRLHRYFLEMV  207 (208)
T ss_dssp             --EECSSCEEEEEE--T-T--EEEEEEET--TEEEESSCGGGSSC------------------CHHHHHHHTTC
T ss_pred             --cCCCCcEEEEEE--C-C--EEEEEEEC--CEEEEEeCCCcCCc------------------HHHHHHHHHHh
Confidence              678899999995  3 3  48899865  69999999997631                  26888888765

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.83  E-value=4.9e-21  Score=187.73  Aligned_cols=169  Identities=20%  Similarity=0.219  Sum_probs=102.6

Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCcee----e
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFY----E  188 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~----~  188 (350)
                      +.|+.+||||+|||....    .+.    .++++++.+.+++  +|+||||+|||+|+.++||++.++.+.....    .
T Consensus       346 ~~L~~~DgIIlpGG~G~~----~~~----g~i~~ir~a~~~~--~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~  415 (535)
T 3nva_A          346 EILGNVNGIIVLPGFGSR----GAE----GKIKAIKYAREHN--IPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNT  415 (535)
T ss_dssp             TTTTSCSEEEECCCCSST----THH----HHHHHHHHHHHHT--CCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTC
T ss_pred             hhccCCCEEEECCCCCCc----cHH----HHHHHHHHHHHcC--CcEEEECcchhHHHHHhhccccCccCCcccccCCCC
Confidence            568899999999975421    222    2445566655555  9999999999999999999975444332110    0


Q ss_pred             eeec-eeecC-------CCCCcc----cccCCchhHHhhcccceE--EEeecceeecCCCccccc-cccceEEEEeecCC
Q psy14047        189 NLAL-EFMPS-------FRQSLL----YSRAPIHVLQELATSHIT--HNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNR  253 (350)
Q Consensus       189 ~~~i-~~~~~-------~~~~~l----f~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~  253 (350)
                      ..|+ .+...       .....+    ..-.+.+....+.....+  .+.|++.|..  +..+.+ +++++++|++ +|+
T Consensus       416 ~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs--~h~q~l~~~GL~vsA~s-~DG  492 (535)
T 3nva_A          416 KDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNP--KYVDILEDAGLVVSGIS-ENG  492 (535)
T ss_dssp             SCEEEECBCSSSCBCSSCCCCEEEEEEEEECTTSHHHHHHTSSEEEEEEEECCEECH--HHHHHHHHTTCEEEEEC-TTC
T ss_pred             CCCeeecchhcccccccCCccccCceEEEEcCCCcHHHHhCCCeeeecccccceech--HHHhhcccCCeEEEEEe-CCC
Confidence            1111 11100       000000    001123333333323334  4455666642  111234 6899999997 655


Q ss_pred             CceEEEEEEcCCcc-EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        254 GLKFISSVEHKVYP-FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       254 ~~e~v~ai~~~~~~-i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      .   +++++++++| ++|+|||||....+.              .++.+|..|+++|++
T Consensus       493 ~---IEAIE~~~~pf~vGVQfHPE~~~~p~--------------~~~~LF~~Fv~Aa~~  534 (535)
T 3nva_A          493 L---VEIIELPSNKFFVATQAHPEFKSRPT--------------NPSPIYLGFIRAVAS  534 (535)
T ss_dssp             C---EEEEECTTSSCEEEESSCGGGGCCSS--------------SCCHHHHHHHHHHTC
T ss_pred             C---EEEEEeCCCCcEEEEEeCCEecCCCC--------------ChhHHHHHHHHHHHh
Confidence            4   9999999999 589999999764321              145899999999964

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.83  E-value=3.1e-21  Score=194.48  Aligned_cols=194  Identities=19%  Similarity=0.206  Sum_probs=121.5

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccc
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYA   84 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~   84 (350)
                      ++|.|+|+....     +.        ..+++++|+++|+.++.++..++     ..++.+||||||||+ +..+     
T Consensus         3 ~m~~I~Iid~~~-----g~--------~~~~~~~l~~~G~~~~vv~~~~~-----~~l~~~DglILpGgG-~~~~-----   58 (555)
T 1jvn_A            3 HMPVVHVIDVES-----GN--------LQSLTNAIEHLGYEVQLVKSPKD-----FNISGTSRLILPGVG-NYGH-----   58 (555)
T ss_dssp             SSCEEEEECCSC-----SC--------CHHHHHHHHHTTCEEEEESSGGG-----CCSTTCSCEEEEECS-CHHH-----
T ss_pred             CCCEEEEEECCC-----CC--------HHHHHHHHHHCCCEEEEECCccc-----cccccCCEEEECCCC-chHh-----
Confidence            458999997421     11        15788999999999998874321     135678999998865 3220     


Q ss_pred             ccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047         85 KAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL  164 (350)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~  164 (350)
                                                                     ..+.+...  .+.++++++.+++  +||||||+
T Consensus        59 -----------------------------------------------~~~~l~~~--~~~~~i~~~~~~g--~PiLGIC~   87 (555)
T 1jvn_A           59 -----------------------------------------------FVDNLFNR--GFEKPIREYIESG--KPIMGIXV   87 (555)
T ss_dssp             -----------------------------------------------HHHHHHHT--TCHHHHHHHHHTT--CCEEEEEH
T ss_pred             -----------------------------------------------Hhhhhhhc--cHHHHHHHHHHcC--CcEEEEch
Confidence                                                           00111110  1345666666666  99999999


Q ss_pred             HHHHHHHHh--cCccccCCccCceee-------------eeeceeecCCCCCcccccCCchhHHhhcccceEEEeeccee
Q psy14047        165 GFQLLLYTS--NNENELRTRCDCFYE-------------NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCI  229 (350)
Q Consensus       165 G~QlLa~a~--Gg~v~~~~~~~~~~~-------------~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v  229 (350)
                      |||+|+.++  ||....+...+....             +.++.   . . +.+|..++..        ..++++|++++
T Consensus        88 G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~---~-~-~~L~~~l~~~--------~~~~~vHS~~~  154 (555)
T 1jvn_A           88 GLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCI---P-S-ENLFFGLDPY--------KRYYFVHSFAA  154 (555)
T ss_dssp             HHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCC---C-C-TTCCTTCCTT--------SCEEEEESEEC
T ss_pred             hhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEE---E-c-CHHHhhCCCC--------ceEEEEEEEEE
Confidence            999999987  222222222221111             11111   1 1 5677666542        24778888887


Q ss_pred             ecCCCcccc----ccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHH
Q psy14047        230 TPSNFTDNG----LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWL  305 (350)
Q Consensus       230 ~~~~~~~~~----L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~F  305 (350)
                      ....    .    ||+++.++|++ +.+...++++++.  .++||+|||||++.                ..+..++++|
T Consensus       155 ~~i~----~~~~~L~~g~~vlA~s-~~~~D~~i~ai~~--~~i~GvQFHPE~s~----------------~~g~~l~~~F  211 (555)
T 1jvn_A          155 ILNS----EKKKNLENDGWKIAKA-KYGSEEFIAAVNK--NNIFATQFHPEKSG----------------KAGLNVIENF  211 (555)
T ss_dssp             BCCH----HHHHHHHHTTCEEEEE-EETTEEEEEEEEE--TTEEEESSBGGGSH----------------HHHHHHHHHH
T ss_pred             Eecc----cccccCCCCCEEEEEE-cCCCCCeEEEEEe--CCEEEEEeCcEecC----------------hhHHHHHHHH
Confidence            5221    2    36789999986 4321247899994  37999999999652                2468899999


Q ss_pred             HHHH
Q psy14047        306 VSQA  309 (350)
Q Consensus       306 v~~~  309 (350)
                      ++..
T Consensus       212 l~~~  215 (555)
T 1jvn_A          212 LKQQ  215 (555)
T ss_dssp             HTTC
T ss_pred             Hhcc
Confidence            9765

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.83  E-value=4.1e-21  Score=169.30  Aligned_cols=168  Identities=21%  Similarity=0.228  Sum_probs=100.5

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .+++++|+++|+.++.++...       .++.+|||+||||+ +..+.                  +..+          
T Consensus        16 ~~~~~~l~~~G~~~~~~~~~~-------~l~~~d~lil~G~g-~~~~~------------------~~~l----------   59 (200)
T 1ka9_H           16 RSAAKALEAAGFSVAVAQDPK-------AHEEADLLVLPGQG-HFGQV------------------MRAF----------   59 (200)
T ss_dssp             HHHHHHHHHTTCEEEEESSTT-------SCSSCSEEEECCCS-CHHHH------------------HHTT----------
T ss_pred             HHHHHHHHHCCCeEEEecChH-------HcccCCEEEECCCC-cHHHH------------------HHHH----------
Confidence            667899999999999887432       25678999998855 32200                  0000          


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH---hcCccccCCccCceee-
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT---SNNENELRTRCDCFYE-  188 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a---~Gg~v~~~~~~~~~~~-  188 (350)
                                          .+.      .+.++++++.+++  +||||||+|||+|+.+   +|| ...+...+.... 
T Consensus        60 --------------------~~~------~~~~~i~~~~~~~--~PilGIC~G~Qll~~~~~~~Gg-~~~l~~~~g~v~~  110 (200)
T 1ka9_H           60 --------------------QES------GFVERVRRHLERG--LPFLGICVGMQVLYEGSEEAPG-VRGLGLVPGEVRR  110 (200)
T ss_dssp             --------------------SSS------CTHHHHHHHHHTT--CCEEECTHHHHTTSSEETTSTT-CCCCCSSSSEEEE
T ss_pred             --------------------Hhc------CHHHHHHHHHHcC--CeEEEEcHHHHHHHHhccccCC-cCCccccccEEEE
Confidence                                000      1345566666666  9999999999999999   575 222332222211 


Q ss_pred             ----------eeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEE
Q psy14047        189 ----------NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFI  258 (350)
Q Consensus       189 ----------~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v  258 (350)
                                ..++..+   . +  |.+++.         ..++++|++++ +.       +++ ++ |++ ++++.+ +
T Consensus       111 ~~~~~~~~~G~~~v~~~---~-~--l~~~~~---------~~~~~~Hs~~~-~~-------~~~-~v-a~s-~~~g~~-~  163 (200)
T 1ka9_H          111 FRAGRVPQMGWNALEFG---G-A--FAPLTG---------RHFYFANSYYG-PL-------TPY-SL-GKG-EYEGTP-F  163 (200)
T ss_dssp             CCSSSSSEEEEEECEEC---G-G--GGGGTT---------CEEEEEESEEC-CC-------CTT-CC-EEE-EETTEE-E
T ss_pred             CCCCCCCceeEEEEEec---h-h--hhcCCC---------CCEEEeccccc-CC-------CCC-cE-EEE-EeCCeE-E
Confidence                      1122111   1 1  333222         35889999998 32       222 56 776 441223 4


Q ss_pred             EEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHH---HHHHHHH
Q psy14047        259 SSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFF---DWLVSQA  309 (350)
Q Consensus       259 ~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~---~~Fv~~~  309 (350)
                      +++.+++ ++||+|||||++.                ..+..++   ++|++.|
T Consensus       164 ~~~~~~~-~i~gvQfHPE~~~----------------~~g~~l~~~~~~F~~~~  200 (200)
T 1ka9_H          164 TALLAKE-NLLAPQFHPEKSG----------------KAGLAFLALARRYFEVL  200 (200)
T ss_dssp             EEEEECS-SEEEESSCTTSSH----------------HHHHHHHHHHHHHC---
T ss_pred             EEEEeeC-CEEEEecCCCcCc----------------cchhHHHHHHHHHHhhC
Confidence            5555555 8999999999773                2477899   9998765

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.74  E-value=4.4e-17  Score=151.36  Aligned_cols=116  Identities=16%  Similarity=0.074  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceE
Q psy14047        142 MIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHIT  221 (350)
Q Consensus       142 ~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v  221 (350)
                      .+++++++.   +  +|+||||+|+|+++.++||... .......-+..++..+  ...++|+.++++.+        .+
T Consensus       126 ~li~~~~~~---~--~~~lgIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~~~~--~~~~pL~~g~~~~f--------~~  189 (301)
T 2vdj_A          126 RIMEYSKTN---V--TSTLHICWGAQAGLYHHYGVQK-YPLKEKMFGVFEHEVR--EQHVKLLQGFDELF--------FA  189 (301)
T ss_dssp             HHHHHHHHH---E--EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEEEEC--CSSCGGGTTCCSEE--------EE
T ss_pred             HHHHHHHHc---C--CcEEEEcHHHHHHHHHhCCCcc-ccCCCCEEEEEEEEec--CCCCccccCCCCce--------Ee
Confidence            456666654   3  9999999999998888888432 1111122233444332  24677888877654        35


Q ss_pred             EEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCc
Q psy14047        222 HNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAY  280 (350)
Q Consensus       222 ~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~  280 (350)
                      .++|+..+..+...  .+ +++++||.| +.++   ++++..++.+++++|||||.+..
T Consensus       190 phsr~~~~~~~~v~--~~-pga~vLA~S-~~~~---~~~~~~~~~~~~~vQgHpEyd~~  241 (301)
T 2vdj_A          190 VHSRHTEVRESDIR--EV-KELTLLANS-EEAG---VHLVIGQEGRQVFALGHSEYSCD  241 (301)
T ss_dssp             EEEEEEECCHHHHH--TC-TTEEEEEEE-TTTE---EEEEEEGGGTEEEECSCTTCCTT
T ss_pred             eeEeccCcCHHHcc--CC-CCCEEEEeC-CCCc---ceEEEecCCCEEEEECCCCCCHH
Confidence            55544222211000  34 399999998 7776   78888866689999999998753

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.68  E-value=1.5e-16  Score=148.19  Aligned_cols=141  Identities=16%  Similarity=0.151  Sum_probs=90.7

Q ss_pred             hccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047        115 LGQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA  191 (350)
Q Consensus       115 l~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~  191 (350)
                      .+++||+|++|+....   .+...|... ..+++++++.   +  +|+||||+|+|+++.++||... .......-+..+
T Consensus       109 ~~~~DglIITGsP~~~~~~ed~~yw~el-~~li~~~~~~---~--~p~LGIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~  181 (312)
T 2h2w_A          109 DRKFDGFIITGAPVELLPFEEVDYWEEL-TEIMEWSRHN---V--YSTMFICWAAQAGLYYFYGIPK-YELPQKLSGVYK  181 (312)
T ss_dssp             TCCEEEEEECCCSCTTSCGGGSTTHHHH-HHHHHHHHHH---E--EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEE
T ss_pred             ccCcCEEEECCCCCCCCCCccCchHHHH-HHHHHHHHHc---C--CcEEEECHHHHHHHHHhCCCcc-ccCCCCEEEEEE
Confidence            4679999999988533   223344432 2456666654   3  9999999999998888888532 121122223344


Q ss_pred             ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047        192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI  271 (350)
Q Consensus       192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv  271 (350)
                      +..+.   .++|+.++++.+        .+.++|+..+..+..   ..++++++||.| +.++   ++++..++.+++++
T Consensus       182 ~~~~~---~~pL~~g~~~~f--------~vphsr~~e~~~~~v---~~~pga~vLA~S-~~~~---~q~~~~~~~~~~~v  243 (312)
T 2h2w_A          182 HRVAK---DSVLFRGHDDFF--------WAPHSRYTEVKKEDI---DKVPELEILAES-DEAG---VYVVANKSERQIFV  243 (312)
T ss_dssp             EEESS---CCGGGTTCCSEE--------EEEEEEEEECCHHHH---TTCC-CEEEEEE-TTTE---EEEEECSSSSEEEE
T ss_pred             EEEcC---CCccccCCCCce--------EeeEEeccccCHHHc---cCCCCCEEEEcC-CCCc---ceEEEecCCCEEEE
Confidence            44432   677888877654        356655444321110   122599999998 7776   88998877789999


Q ss_pred             cccCCcCCc
Q psy14047        272 QFHPEKNAY  280 (350)
Q Consensus       272 QfHPE~~~~  280 (350)
                      |||||.+..
T Consensus       244 QgHPEyd~~  252 (312)
T 2h2w_A          244 TGHPEYDRY  252 (312)
T ss_dssp             CSCTTCCTT
T ss_pred             ECCCCCCHH
Confidence            999998753

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.19  E-value=1.5e-10  Score=125.37  Aligned_cols=57  Identities=18%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG   74 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~   74 (350)
                      .+|.|+|...+...            ...++.++++++|+.++.++... ...-...++.+|+|+||||.
T Consensus      1046 ~~pkVaIi~~~G~N------------~~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGf 1102 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVN------------SHVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGF 1102 (1303)
T ss_dssp             CCCEEEEEECTTCC------------CHHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSC
T ss_pred             CCCEEEEEecCCcC------------CHHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCC
Confidence            57999999877531            23677889999999998887521 00001125678888888886

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.63  E-value=1e-07  Score=83.82  Aligned_cols=36  Identities=14%  Similarity=-0.004  Sum_probs=29.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        133 DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       133 ~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +..|....  |.+.++++.++|  +|++|||.|+|+++..
T Consensus        94 ~~~L~~~g--l~~~l~~~~~~G--~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A           94 LQELKRTG--ADKLILEEIAAG--KLYIGESAGAVITSPN  129 (206)
T ss_dssp             HHHHHHHT--HHHHHHHHHHTT--CEEEEETHHHHTTSSB
T ss_pred             HHHHHHCC--hHHHHHHHHHcC--CeEEEECHHHHHhccc
Confidence            44555543  788899988888  9999999999999854

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=98.44  E-value=1.2e-07  Score=84.75  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                      +.+.++|+|++|| |.+...+..|....  |.+.++++.++|  +|++|||.|+|+|+...
T Consensus        75 ~~l~~ad~I~lpG-G~~~~~~~~l~~~g--l~~~l~~~~~~G--~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           75 AAIEKAEIIIVGG-GNTFQLLKESRERG--LLAPMADRVKRG--ALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HHHHHCSEEEECC-SCHHHHHHHHHHTT--CHHHHHHHHHTT--CEEEEETHHHHHTSSBS
T ss_pred             HHHhcCCEEEECC-CcHHHHHHHHHHCC--hHHHHHHHHHcC--CEEEEECHHHHhhcccc
Confidence            5678899999999 66555556666543  788899888888  99999999999999743

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=97.37  E-value=0.00012  Score=63.07  Aligned_cols=50  Identities=26%  Similarity=0.549  Sum_probs=38.1

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.+|+||+||+...    ..+.. ...+.++++++.+++  +||.|||.|.++|+.+
T Consensus        85 ~~~D~livpGG~~~----~~l~~-~~~l~~~l~~~~~~g--k~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A           85 AEFDALLLPGGHSP----DYLRG-DNRFVTFTRDFVNSG--KPVFAICHGPQLLISA  134 (193)
T ss_dssp             GGCSEEEECCBTHH----HHHTT-SHHHHHHHHHHHHTT--CCEEEETTTHHHHHHH
T ss_pred             ccCCEEEECCCcCH----HHhhh-CHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence            56899999998431    12211 014788899988888  9999999999999987

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=97.18  E-value=0.00086  Score=57.80  Aligned_cols=51  Identities=29%  Similarity=0.433  Sum_probs=38.3

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|.||+||+....   ..+.. ...+.++++++.+++  +||.+||.|.++|+.+
T Consensus        65 ~~~D~livpGG~~~~---~~l~~-~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           65 GPYDVVVLPGGNLGA---QNLSE-SAAVKEILKEQENRK--GLIATICAGPTALLAH  115 (197)
T ss_dssp             CCCSEEEECCCHHHH---HHHHH-CHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred             cCCCEEEECCCchhH---HHhhh-CHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence            679999999974211   11211 124788999998888  9999999999999976

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=96.94  E-value=0.0055  Score=53.45  Aligned_cols=49  Identities=14%  Similarity=0.074  Sum_probs=37.7

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.+|.||+||+.....  ..-.    .+.++++++.++|  ++|.+||.|..+|+.+
T Consensus        73 ~~~D~livpGG~~~~~--~~~~----~l~~~l~~~~~~g--k~iaaiC~G~~~La~a  121 (212)
T 3efe_A           73 ESKDLLILPGGTTWSE--EIHQ----PILERIGQALKIG--TIVAAICGATDALANM  121 (212)
T ss_dssp             CTTCEEEECCCSCTTS--GGGH----HHHHHHHHHHHHT--CEEEEETHHHHHHHHT
T ss_pred             cCCCEEEECCCCcccc--ccCH----HHHHHHHHHHHCC--CEEEEEcHHHHHHHHc
Confidence            3789999999865321  1111    3778888888887  9999999999999875

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.91  E-value=0.0011  Score=55.86  Aligned_cols=54  Identities=15%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             hccCCEEEeCCC--C-CCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGG--G-ASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~--g-~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.||+||+  . .... ...+.. ...+.++++++.+++  +||.+||.|.++|+.+
T Consensus        64 ~~~~D~livpGG~~~~~~~~-l~~~~~-~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a  120 (175)
T 3cne_A           64 EDEFDALVFSCGDAVPVFQQ-YANQPY-NVDLMEVIKTFGEKG--KMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GGGCSEEEEECCTTGGGGGG-CTTCHH-HHHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred             cccCCEEEECCCcCcccHHH-Hhhccc-CHHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence            367999999998  3 2211 110001 114788999998888  9999999999999976

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=96.87  E-value=0.0011  Score=56.42  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=38.3

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+||+||+|||..... .  ...  ..+.++++++.+++  +||.+||.|-.+|+.+
T Consensus        67 ~~~yD~liiPGG~g~~~-l--~~~--~~~~~~l~~~~~~~--k~iaaIC~g~~~La~a  117 (177)
T 4hcj_A           67 AVEFDAVVFVGGIGCIT-L--WDD--WRTQGLAKLFLDNQ--KIVAGIGSGVVIMANA  117 (177)
T ss_dssp             GGGCSEEEECCSGGGGG-G--TTC--HHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred             HhHCCEEEECCCccHHH-H--hhC--HHHHHHHHHHHHhC--CEEEEecccHHHHHHC
Confidence            45799999999854321 1  111  13778889988888  9999999999999875

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=96.77  E-value=0.0008  Score=56.32  Aligned_cols=50  Identities=24%  Similarity=0.466  Sum_probs=37.7

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|.||+||+...    ..+.. ...+.++++++.+++  +||.+||.|.++|+.+
T Consensus        62 ~~~D~livpGG~~~----~~~~~-~~~l~~~l~~~~~~~--k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           62 DEFDALVLPGGKAP----EIVRL-NEKAVMITRRMFEDD--KPVASICHGPQILISA  111 (168)
T ss_dssp             GGCSEEEECCBSHH----HHHTT-CHHHHHHHHHHHHTT--CCEEEETTTHHHHHHT
T ss_pred             hhCCEEEECCCcCH----HHhcc-CHHHHHHHHHHHHCC--CEEEEECHhHHHHHHC
Confidence            36899999997532    11111 114788899988888  9999999999999975

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=96.69  E-value=0.00064  Score=58.15  Aligned_cols=51  Identities=27%  Similarity=0.412  Sum_probs=36.8

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|+||+||+....   ..+.. ...+.++++++.++|  +||.+||.|.++|+.+
T Consensus        74 ~~~D~livpGG~~~~---~~~~~-~~~l~~~l~~~~~~g--k~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           74 SDYDGLLLPGGTVNP---DKLRL-EEGAMKFVRDMYDAG--KPIAAICHGPWSLSET  124 (190)
T ss_dssp             GGCSEEEECCCTHHH---HHHTT-CHHHHHHHHHHHHTT--CCEEEC-CTTHHHHHT
T ss_pred             hhCCEEEECCCchhH---HHHhh-CHHHHHHHHHHHHcC--CEEEEECHhHHHHHhC
Confidence            468999999975211   11110 114788899988888  9999999999999976

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=96.65  E-value=0.0017  Score=56.60  Aligned_cols=51  Identities=14%  Similarity=0.333  Sum_probs=36.8

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH-HHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF-QLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~-QlLa~a  172 (350)
                      ..+|.||+||+....   ..+.. ...+.++++++.+++  ++|.+||.|. .+|+.+
T Consensus        70 ~~~D~livpGG~~~~---~~l~~-~~~l~~~l~~~~~~g--k~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           70 EAFDALALPGGVGGA---QAFAD-STALLALIDAFSQQG--KLVAAICATPALVFAKQ  121 (208)
T ss_dssp             GGCSEEEECCCHHHH---HHHHT-CHHHHHHHHHHHHTT--CEEEEETTHHHHTTTTT
T ss_pred             cCCCEEEECCCchHH---HHHhh-CHHHHHHHHHHHHcC--CEEEEEChhHHHHHHHC
Confidence            468999999974211   11111 124788999998888  9999999998 788764

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=96.59  E-value=0.00094  Score=59.24  Aligned_cols=58  Identities=14%  Similarity=0.294  Sum_probs=40.2

Q ss_pred             hccCCEEEeCCCCCCcccchHHHH------HHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAK------AGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~------~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                      .+.+|+||+|||......+..+..      ....+.++++++.++|  +||.+||.|-++|+.++.
T Consensus        88 ~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g--k~vaaIC~G~~~La~aL~  151 (232)
T 1vhq_A           88 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAG--KPLGFMCIAPAMLPKIFD  151 (232)
T ss_dssp             GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTT--CCEEEETTGGGGHHHHCS
T ss_pred             cccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHHhc
Confidence            457999999998543110111100      0014778899988888  999999999999998844

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=96.52  E-value=0.012  Score=59.62  Aligned_cols=54  Identities=11%  Similarity=0.077  Sum_probs=37.2

Q ss_pred             ccCCEEEeCCCCCCccc----chHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYA----DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~----~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..||+||+|||......    .+.+... ..++++++++.+.+  |||-.||.|-++|..+
T Consensus       589 ~~fDAVvlPGG~~~~~~~~~~~d~Lr~~-~~a~~fV~e~~~hg--KpIAAIchgp~lL~~A  646 (688)
T 3ej6_A          589 TAFDAVVVAEGAERVFSGKGAMSPLFPA-GRPSQILTDGYRWG--KPVAAVGSAKKALQSI  646 (688)
T ss_dssp             GGCSEEEECTTCCTTTSTTTTCCTTSCT-THHHHHHHHHHHTT--CCEEEEGGGHHHHHHT
T ss_pred             hcCcEEEECCCcccccccccchhhhccC-HHHHHHHHHHHHcC--CEEEEeCccHHHHHHc
Confidence            35899999988553200    0112100 13678889988888  9999999999999876

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=96.51  E-value=0.0038  Score=54.36  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=38.1

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.+|.||+||+..... .+  .    .+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        62 ~~~D~livpGG~~~~~-~~--~----~l~~~l~~~~~~g--k~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           62 ANFNLLVMIGGDSWSN-DN--K----KLLHFVKTAFQKN--IPIAAICGAVDFLAKN  109 (206)
T ss_dssp             SCCSEEEECCBSCCCC-CC--H----HHHHHHHHHHHTT--CCEEEETHHHHHHHHT
T ss_pred             cCCCEEEEcCCCChhh-cC--H----HHHHHHHHHHHcC--CEEEEECHHHHHHHHc
Confidence            4689999999865432 11  1    3778899988888  9999999999999876

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=96.31  E-value=0.0012  Score=57.46  Aligned_cols=52  Identities=17%  Similarity=0.395  Sum_probs=38.3

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH-HHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF-QLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~-QlLa~a  172 (350)
                      ...+|+||+||+....   ..+.. ...+.++++++.++|  +||.+||.|. ++|+.+
T Consensus        64 ~~~~D~livpGG~~~~---~~l~~-~~~l~~~l~~~~~~g--k~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           64 DGEYDVIVLPGGIKGA---ECFRD-STLLVETVKQFHRSG--RIVAAICAAPATVLVPH  116 (205)
T ss_dssp             TSCCSEEEECCCHHHH---HHHHH-CHHHHHHHHHHHHTT--CEEEEETHHHHHHTTTT
T ss_pred             cccCCEEEECCCcccH---HHhcc-CHHHHHHHHHHHHcC--CEEEEECHhHHHHHHHC
Confidence            3679999999984211   11211 124788999998888  9999999999 999864

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=96.30  E-value=0.0015  Score=55.75  Aligned_cols=49  Identities=24%  Similarity=0.315  Sum_probs=36.6

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.+|+||+||+.......+      ..+.++++++.+++  +||.+||.|.++|+.+
T Consensus        62 ~~~D~livpGG~~~~~~~~------~~l~~~l~~~~~~~--k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           62 VDIDALVIPGGLSWEKGTA------ADLGGLVKRFRDRD--RLVAGICAAASALGGT  110 (188)
T ss_dssp             TTCSEEEECCBSHHHHTCC------CCCHHHHHHHHHTT--CEEEEETHHHHHHHHT
T ss_pred             ccCCEEEECCCCccccccc------HHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence            3689999999853211001      13677888888887  9999999999999975

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=96.29  E-value=0.0054  Score=56.26  Aligned_cols=59  Identities=14%  Similarity=0.144  Sum_probs=42.4

Q ss_pred             hhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHH
Q psy14047        109 LKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY  171 (350)
Q Consensus       109 ~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~  171 (350)
                      .++.+.+.++|+|+++||..... ...|..+  .+.+.++++.++| +.|+.|+|.|.-+++.
T Consensus       102 ~~~~~~l~~ad~I~v~GGnt~~l-~~~l~~t--~l~~~L~~~~~~G-~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          102 SGYRLFVEQCTGIFMTGGDQLRL-CGLLADT--PLMDRIRQRVHNG-EISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HHHHHHHHHCSEEEECCSCHHHH-HHHHTTC--HHHHHHHHHHHTT-SSEEEEETHHHHTTSS
T ss_pred             HHHHHHHhcCCEEEECCCCHHHH-HHHHHhC--CHHHHHHHHHHCC-CeEEEEeCHHHHhhhH
Confidence            34567788899999998754321 2233333  4778888888776 3799999999988874

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=96.29  E-value=0.0034  Score=54.69  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=39.2

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +..+|.||+||+.........-.   ..+.++++++.++|  ++|.+||-|..+|+.+
T Consensus        72 ~~~~D~livpGg~~~~~~~~~~~---~~l~~~l~~~~~~g--~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           72 FDFTNILIIGSIGDPLESLDKID---PALFDWIRELHLKG--SKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             CSCCSEEEECCCSCHHHHGGGSC---HHHHHHHHHHHHTT--CEEEEETTHHHHHHHH
T ss_pred             cCCCCEEEECCCCCchhhhccCC---HHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence            46799999999865322100001   14788899988888  9999999999999987

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=96.22  E-value=0.0019  Score=55.20  Aligned_cols=51  Identities=16%  Similarity=0.309  Sum_probs=37.6

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|.||+||+...   ...+... ..+.++++++.+++  +||.+||.|.++|+.+
T Consensus        66 ~~~D~livpGG~~~---~~~~~~~-~~~~~~l~~~~~~~--k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           66 DKFDVVVLPGGLGG---SNAMGES-SLVGDLLRSQESGG--GLIAAICAAPTVLAKH  116 (190)
T ss_dssp             CCCSEEEECCCHHH---HHHHHHC-HHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred             ccCCEEEECCCChH---HHHhhhC-HHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence            46899999997321   1112111 24788899998888  9999999999999875

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=96.21  E-value=0.0081  Score=61.45  Aligned_cols=49  Identities=14%  Similarity=-0.052  Sum_probs=37.1

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..||+||+||| .... ...-.    .++++++++.+.+  +||-+||.|-++|+.+
T Consensus       660 ~~fDALVVPGG-g~~~-Lr~d~----~vl~~Vre~~~~g--KpIAAIC~Gp~lLa~A  708 (753)
T 3ttv_A          660 LTVDAVIVPCG-NIAD-IADNG----DANYYLMEAYKHL--KPIALAGDARKFKATI  708 (753)
T ss_dssp             GGCSEEEECCS-CGGG-TTTCH----HHHHHHHHHHHTT--CCEEEEGGGGGGGGGG
T ss_pred             cCCCEEEECCC-ChHH-hhhCH----HHHHHHHHHHhcC--CeEEEECchHHHHHHc
Confidence            35899999999 3221 11111    3778899999888  9999999999999876

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=96.17  E-value=0.003  Score=56.47  Aligned_cols=56  Identities=16%  Similarity=0.239  Sum_probs=38.7

Q ss_pred             hccCCEEEeCCCCCCcccchHH--------HHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047        115 LGQVNGVLIPGGGASFYADDGY--------AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS  173 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~--------~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~  173 (350)
                      .+.+|+||+|||.........+        .. ...+.++++++.++|  +||.+||.|..+|+.+.
T Consensus       105 ~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~-~~~l~~~lr~~~~~g--k~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          105 VEEFDMLVIPGGYGVAKNFSNLFDEDKENDYI-LPEFKNAVREFYNAK--KPIGAVCISPAVVVALL  168 (242)
T ss_dssp             GGGCSEEEECCCHHHHHHHBSTTSCC--CCCB-CHHHHHHHHHHHHTT--CCEEEETTHHHHHHHHH
T ss_pred             cccCCEEEEcCCcchhhhhhhhhccccccccC-CHHHHHHHHHHHHcC--CEEEEECHHHHHHHHhC
Confidence            3579999999985321000000        00 013778889988888  99999999999999874

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=96.15  E-value=0.0049  Score=53.38  Aligned_cols=49  Identities=12%  Similarity=0.159  Sum_probs=38.9

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.||+||+......  . .    .+.++++++.++|  ++|.+||-|..+|+.+
T Consensus        69 ~~~~D~livpGG~~~~~~--~-~----~l~~~l~~~~~~g--~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           69 LKELDLLVVCGGLRTPLK--Y-P----ELDRLLNDCAAHG--MALGGLWNGAWFLGRA  117 (202)
T ss_dssp             GTTCSEEEEECCTTCCSC--C-T----THHHHHHHHHHHT--CEEEEETTHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchhhc--c-H----HHHHHHHHHHhhC--CEEEEECHHHHHHHHc
Confidence            457899999998654432  1 2    3778888888887  9999999999999987

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=96.00  E-value=0.0018  Score=56.82  Aligned_cols=52  Identities=17%  Similarity=0.371  Sum_probs=38.3

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|+||+||+.........-    ..+.++++++.+++  +||.+||.|-++|+.+
T Consensus        87 ~~~~D~livpGG~~~~~~l~~~----~~l~~~l~~~~~~~--k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A           87 AHGFDAIFLPGGHGTMFDFPDN----ETLQYVLQQFAEDG--RIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             GSSCSEEEECCCTTHHHHSTTC----HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             hhhCCEEEECCCcchHHHhhcC----HHHHHHHHHHHHCC--CEEEEEChHHHHHHHc
Confidence            3579999999986532111111    14778889988888  9999999999998865

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=95.64  E-value=0.0026  Score=56.81  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+.+|+||+|||.........-    ..+.++++++.++|  +||.+||.|-.+|+.+
T Consensus        96 ~~~~D~livpGG~~~~~~l~~~----~~l~~~l~~~~~~g--k~vaaIC~G~~~La~a  147 (243)
T 1rw7_A           96 ADDYQIFFASAGHGTLFDYPKA----KDLQDIASEIYANG--GVVAAVCHGPAIFDGL  147 (243)
T ss_dssp             GGGEEEEEECCSTTHHHHGGGC----HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             HhhCcEEEECCCCCchhhcccC----HHHHHHHHHHHHcC--CEEEEECCCHHHHHhc
Confidence            3579999999986532111111    14778889988888  9999999999988876

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=95.47  E-value=0.0045  Score=55.49  Aligned_cols=52  Identities=19%  Similarity=0.223  Sum_probs=38.4

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+.||+|++|||......... .   ..+.++++++.++|  +||.+||.|-.+|+.+
T Consensus       103 ~~~yD~l~ipGG~g~~~~l~~-~---~~l~~~l~~~~~~g--k~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          103 PHDYGLMFVCGGHGALYDFPH-A---KHLQNIAQDIYKRG--GVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             GGGCSEEEECCSTTHHHHGGG-C---HHHHHHHHHHHHTT--CEEEEETTGGGGGGGC
T ss_pred             hhhCCEEEEeCCCchhhhccc-C---HHHHHHHHHHHHcC--CEEEEEChHHHHHHHh
Confidence            457999999998643111111 1   14778889988888  9999999999998765

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=95.44  E-value=0.032  Score=57.25  Aligned_cols=53  Identities=17%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                      ..+|+||+|||...   ...+.. ...+.++++++.+.|  +||.+||.|..+|+.++|
T Consensus       594 ~~yDaViVPGG~~~---~~~l~~-~~~l~~~Lr~~~~~g--K~IaAIC~G~~lLA~AlG  646 (715)
T 1sy7_A          594 TMVDAIFIPGGAKA---AETLSK-NGRALHWIREAFGHL--KAIGATGEAVDLVAKAIA  646 (715)
T ss_dssp             GGSSEEEECCCHHH---HHHHHT-CHHHHHHHHHHHHTT--CEEEEETTHHHHHHHHHC
T ss_pred             ccCCEEEEcCCccc---Hhhhcc-CHHHHHHHHHHHhCC--CEEEEECHHHHHHHHccC
Confidence            46899999997311   111211 114788899988888  999999999999998853

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=95.33  E-value=0.0069  Score=54.14  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=38.5

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+.||+|++|||.........-    ..+.++++++.++|  +||.+||.|-.+|+.+
T Consensus        96 ~~~yD~l~vpGG~~~~~~l~~~----~~l~~~l~~~~~~g--k~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           96 ASDYKVFFASAGHGALFDYPKA----KNLQDIASKIYANG--GVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GGGCSEEEECCSTTHHHHGGGC----HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             HhhCCEEEEcCCCchhhhcccC----HHHHHHHHHHHHcC--CEEEEECHHHHHHHHh
Confidence            4579999999986532111111    14778889988888  9999999999998865

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=95.31  E-value=0.014  Score=51.67  Aligned_cols=51  Identities=12%  Similarity=0.120  Sum_probs=38.1

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +..+|.||+||+....    .+.. ...+.++++++.+++  ++|.+||-|..+|+.+
T Consensus        63 ~~~~D~livpGG~g~~----~~~~-~~~l~~~lr~~~~~g--~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           63 CPPLDVICIPGGTGVG----ALME-DPQALAFIRQQAARA--RYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             CCCCSEEEECCSTTHH----HHTT-CHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred             CCcCCEEEECCCCChh----hhcc-CHHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence            3569999999985421    1110 014788999998888  9999999999999875

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=94.99  E-value=0.046  Score=55.61  Aligned_cols=28  Identities=11%  Similarity=-0.118  Sum_probs=24.1

Q ss_pred             HHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        143 IYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ++++++++.+.|  |||-.||.|-++|..+
T Consensus       621 ~~~~v~~~~~~g--KpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          621 PLNILLDAFRFG--KTVGALGSGSDALESG  648 (688)
T ss_dssp             HHHHHHHHHHHT--CEEEEEGGGHHHHHHT
T ss_pred             HHHHHHHHHHcC--CEEEEECchHHHHHHc
Confidence            667888888888  9999999999988765

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=94.84  E-value=0.018  Score=54.98  Aligned_cols=51  Identities=31%  Similarity=0.534  Sum_probs=38.5

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.||+||+...    ..+.. ...+.++++++.+++  +||.+||.|.++|+.+
T Consensus       280 ~~~~D~livpGg~~~----~~~~~-~~~~~~~l~~~~~~~--~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          280 SSSYDALVIPGGRAP----EYLAL-NEHVLNIVKEFMNSE--KPVASICHGQQILAAA  330 (396)
T ss_dssp             GGGCSEEEECCBSHH----HHHTT-CHHHHHHHHHHHHTT--CCEEEEGGGHHHHHHT
T ss_pred             cccCCEEEECCCcch----hhhcc-CHHHHHHHHHHHHCC--CEEEEEchHHHHHHHc
Confidence            357999999998532    11111 114788899998888  9999999999999976

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=94.76  E-value=0.0088  Score=54.87  Aligned_cols=52  Identities=13%  Similarity=0.183  Sum_probs=38.0

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .+.+|+||+|||.........-.    .+.++++++.++|  ++|.+||.|-.+|+.+
T Consensus       143 ~~~yD~livPGG~g~~~~l~~~~----~l~~~l~~~~~~g--k~VaaIC~Gp~~La~a  194 (291)
T 1n57_A          143 DSEYAAIFVPGGHGALIGLPESQ----DVAAALQWAIKND--RFVISLCHGPAAFLAL  194 (291)
T ss_dssp             TCSEEEEEECCSGGGGSSGGGCH----HHHHHHHHHHHTT--CEEEEETTGGGGGGGG
T ss_pred             cccCCEEEecCCcchhhhhhhCH----HHHHHHHHHHHcC--CEEEEECccHHHHHhh
Confidence            57899999999843321111111    3778888888888  9999999999887765

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=94.75  E-value=0.0092  Score=51.99  Aligned_cols=50  Identities=16%  Similarity=0.266  Sum_probs=36.8

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|.||+||+....    .+.. ...+.++++++.+++  ++|.+||-|-.+|+.+
T Consensus        64 ~~~D~livpGG~~~~----~~~~-~~~~~~~l~~~~~~~--k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           64 NIEKILFVPGGSGTR----EKVN-DDNFINFIGNMVKES--KYIISVCTGSALLSKA  113 (211)
T ss_dssp             SSEEEEEECCSTHHH----HHTT-CHHHHHHHHHHHHHC--SEEEECTTHHHHHHHT
T ss_pred             CCCCEEEECCCcchh----hhcC-CHHHHHHHHHHHHcC--CEEEEEchHHHHHHhc
Confidence            347999999985321    1210 014788899988888  9999999999999875

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=94.40  E-value=0.02  Score=51.35  Aligned_cols=49  Identities=18%  Similarity=0.269  Sum_probs=36.7

Q ss_pred             cCCEEEeCCCC-CCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        117 QVNGVLIPGGG-ASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       117 ~~dgvIipG~g-~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .||.||+|||. ...    .+.. ...+.++++++.++|  ++|.+||-|..+|+.+
T Consensus        84 ~yD~liVPGG~~g~~----~l~~-~~~l~~~Lr~~~~~g--k~IaaICtG~~lLa~A  133 (253)
T 3ewn_A           84 DLTVLFAPGGTDGTL----AAAS-DAETLAFMADRGARA--KYITSVCSGSLILGAA  133 (253)
T ss_dssp             SCSEEEECCBSHHHH----HHTT-CHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred             CCCEEEECCCccchh----hhcc-CHHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence            57999999975 221    1110 114788999998888  9999999999999876

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=94.26  E-value=0.026  Score=53.86  Aligned_cols=51  Identities=35%  Similarity=0.557  Sum_probs=38.5

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.||+||+....    .+.. ...+.++++++.+++  +||.+||.|.++|+.+
T Consensus        87 ~~~~D~livpGG~~~~----~~~~-~~~~~~~l~~~~~~~--~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           87 LSKYDGLVIPGGRAPE----YLAL-TASVVELVKEFSRSG--KPIASICHGQLILAAA  137 (396)
T ss_dssp             GGGCSEEEECCBSHHH----HHTT-CHHHHHHHHHHHHTT--CCEEEETTTHHHHHHT
T ss_pred             cccCCEEEECCCcchh----hccc-CHHHHHHHHHHHHcC--CEEEEECchHHHHHhc
Confidence            3579999999985321    1111 114788899998888  9999999999999976

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.05  E-value=0.029  Score=53.06  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=37.7

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|.||+||+....    .+.. ...+.++++++.++|  ++|.+||.|..+|+.+
T Consensus        72 ~~~DaLiVPGG~g~~----~l~~-~~~l~~~Lr~~~~~g--k~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           72 SEFDAVVIPGGMAPD----KMRR-NPNTVRFVQEAMEQG--KLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             GGCSEEEECCBTHHH----HHTT-CHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred             cCCCEEEEECCcchh----hccC-CHHHHHHHHHHHHCC--CEEEEECHHHHHHHHc
Confidence            368999999986321    1110 014788899988888  9999999999999876

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=92.98  E-value=0.035  Score=47.58  Aligned_cols=50  Identities=26%  Similarity=0.370  Sum_probs=33.1

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL  168 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql  168 (350)
                      .++.||+||+|||...   ...+.. ...+.++++++.+++ .++|-.||.|..+
T Consensus        70 ~~~~yD~lvvPGG~~~---~~~l~~-~~~l~~~l~~~~~~~-~k~iaaiC~g~~l  119 (194)
T 4gdh_A           70 FAKQYDIAIIPGGGLG---AKTLST-TPFVQQVVKEFYKKP-NKWIGMICAGTLT  119 (194)
T ss_dssp             HHHHCSEEEECCCHHH---HHHHHT-CHHHHHHHHHHTTCT-TCEEEEEGGGGHH
T ss_pred             ccccCCEEEECCCchh---HhHhhh-CHHHHHHHHHhhhcC-CceEEeecccccc
Confidence            4567999999997422   112211 124778888876542 2899999999843

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=90.56  E-value=0.1  Score=46.14  Aligned_cols=50  Identities=18%  Similarity=0.066  Sum_probs=33.1

Q ss_pred             hccCCEEEeCCCC-CCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGG-ASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g-~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ...+|.||+||+. ...    .+.. ...+.+++  +.+++ +++|.+||-|-.+|+.+
T Consensus        78 ~~~~D~liVPGG~~g~~----~l~~-~~~l~~~L--~~~~~-~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           78 VKEQDVVLITSGYRGIP----AALQ-DENFMSAL--KLDPS-RQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             GGGCSEEEECCCTTHHH----HHHT-CHHHHHHC--CCCTT-TCEEEEETTHHHHHHHT
T ss_pred             ccCCCEEEEcCCccCHh----hhcc-CHHHHHHH--HhCCC-CCEEEEEcHHHHHHHHc
Confidence            4679999999983 221    1111 11366777  44444 24999999999999976

>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A

Probab=88.63  E-value=0.39  Score=39.88  Aligned_cols=74  Identities=11%  Similarity=0.054  Sum_probs=41.7

Q ss_pred             CCCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHH----Hhhc-ccceEEcCCCCcc
Q psy14047          3 ATERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYR----KILG-QVNGVLIPGGGAS   76 (350)
Q Consensus         3 ~~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~----~~l~-~~dGli~~GG~~d   76 (350)
                      .|.+|.++|++.-.+.     ..+. .+--......+|+++|+.++......|++.+.    +.++ ..|-||.+||. .
T Consensus         4 ~~~~~rv~ii~tGdEl-----~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVittGG~-s   77 (164)
T 3pzy_A            4 SMTTRSARVIIASTRA-----SSGEYEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGGT-G   77 (164)
T ss_dssp             ---CCEEEEEEECHHH-----HC----CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEEESCC-S
T ss_pred             CCCCCEEEEEEECCCC-----CCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEECCCC-C
Confidence            5788999999865331     1111 22223344578889999986443322224443    3444 68999999997 5


Q ss_pred             cccCCc
Q psy14047         77 FYADDG   82 (350)
Q Consensus        77 v~~~~~   82 (350)
                      +.++|+
T Consensus        78 ~g~~D~   83 (164)
T 3pzy_A           78 IAPTDS   83 (164)
T ss_dssp             SSTTCC
T ss_pred             CCCCcc
Confidence            665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	2e-51
d2abwa1	218	c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei	2e-08
d1jvna2	232	c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain	2e-05
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	3e-04
d1ka9h_	195	c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i	0.001
d1k9vf_	200	c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i	0.001
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	0.001

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (431), Expect = 2e-51
 Identities = 102/345 (29%), Positives = 158/345 (45%), Gaps = 59/345 (17%)

Query: 5   ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQ 64
           ++PIIGIL Q+    V K++   + YI ASYVK +E++GARV P+ +   E         
Sbjct: 2   KKPIIGILMQKCRNKVMKNYG--RYYIAASYVKYLESAGARVVPVRLDLTEKD------- 52

Query: 65  VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIP 124
                                                          E +   +NG+L P
Sbjct: 53  ----------------------------------------------YEILFKSINGILFP 66

Query: 125 GGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCD 184
           GG         YAK   + Y ++ +  ++ DYFP+ G CLGF+ L    + E    T  D
Sbjct: 67  GGSVDLR-RSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECL-LTATD 124

Query: 185 CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWK 244
                + L F      S ++   P  +L  LA   +T N+H W ++  NFT N   K++ 
Sbjct: 125 TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFF 184

Query: 245 VLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDW 304
            + T + +  ++FIS++E   YP  G+Q+HPEK  YEWK      H   A++ A Y  ++
Sbjct: 185 NVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEF 244

Query: 305 LVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
            V++A  ++H F++E EE+ ALIY + P YT  I    + Q Y+F
Sbjct: 245 FVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS--SFQQCYIF 287

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 8/167 (4%)

Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172
             LG  +G++IPGG ++        +   +   +    +  +   PI G C G  LL   
Sbjct: 38  HDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLK--KPIWGTCAGCILLSKN 95

Query: 173 SNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC--IT 230
             N             +     +   R               + +        +    I 
Sbjct: 96  VENIKL--YSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIR 153

Query: 231 PSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
                +    +   + + +  + G   I++VE       G  FHPE 
Sbjct: 154 APYIREILSDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPEL 198

>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 23/167 (13%), Positives = 42/167 (25%), Gaps = 7/167 (4%)

Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENR-DYFPIMGICLGFQLLL 170
           +  +   + +++PG G   +  D     G          +        +    L    + 
Sbjct: 39  DFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGICVGLQALFAGSVE 98

Query: 171 YTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCIT 230
              +            +++           S + S      L                I 
Sbjct: 99  SPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDP--YKRYYFVHSFAAIL 156

Query: 231 PSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
            S    N     WK+          +FI++V          QFHPEK
Sbjct: 157 NSEKKKNLENDGWKIAKAK--YGSEEFIAAVNKN--NIFATQFHPEK 199

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 27/119 (22%)

Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT 217
           P+ GICLG   LL  ++    ++ +      N  ++ +                      
Sbjct: 112 PVFGICLG-HQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVM---------------- 154

Query: 218 SHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
                N        +      L    +V   +  +     +  +     P    Q +PE
Sbjct: 155 -ITAQNHGFAVDEAT------LPANLRVTHKSLFD---GTLQGIHRTDKPAFSFQGNPE 203

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 2/59 (3%)

Query: 219 HITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
                +         F ++                G  F + +  +       QFHPEK
Sbjct: 123 EFGGAFAPLTGRHFYFANSYYGPLTPYSLGKGEYEGTPFTALLAKE--NLLAPQFHPEK 179

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 22/188 (11%)

Query: 90  IYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKE 149
           +Y+  K  S    D+   L++  +     + + IPG G                  I   
Sbjct: 16  LYRGVKRASENFEDVSIELVESPRND-LYDLLFIPGVGHFGEGMRRLR----ENDLIDFV 70

Query: 150 FNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPI 209
                D   ++G+CLG QLL   S     ++                     L   R P 
Sbjct: 71  RKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNV----------VKLRSRRLPH 120

Query: 210 HVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269
               E+       N + + +              + +   +   G  F S+V        
Sbjct: 121 MGWNEVIFKDTFPNGYYYFVHTYRAVCE-----EEHVLGTTEYDGEIFPSAVRKG--RIL 173

Query: 270 GIQFHPEK 277
           G QFHPEK
Sbjct: 174 GFQFHPEK 181

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 27/157 (17%)

Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL 179
            ++I  G  +    +    +  +I  + K         PI+G+CLG Q          ++
Sbjct: 48  RLIISPGPGTPEKREDIGVSLDVIKYLGKRT-------PILGVCLGHQA--IGYAFGAKI 98

Query: 180 RTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL 239
           R     F+  ++   + +     LY             S +    H   I  +   ++  
Sbjct: 99  RRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISAED-- 156

Query: 240 AKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
                             I ++ H+ YP  G+QFHPE
Sbjct: 157 ----------------NEIMAIHHEEYPIYGVQFHPE 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	100.0
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.96
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.95
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.94
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.94
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.94
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.91
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.91
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.91
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.9
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.89
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.87
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.84
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.83
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.79
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.73
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.62
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.3
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	97.32
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	97.21
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	96.75
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	96.49
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	96.49
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	96.33
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	96.0
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	95.86
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	94.71
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	92.99
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	88.67
d1wu2a3	144	MoeA, central domain {Pyrococcus horikoshii, PH164	86.99
d1uz5a3	148	MoeA, central domain {Archaeon Pyrococcus horikosh	85.92
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	82.09
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	80.03

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-59  Score=436.96  Aligned_cols=285  Identities=36%  Similarity=0.667  Sum_probs=241.1

Q ss_pred             CCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047          5 ERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY   83 (350)
Q Consensus         5 ~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~   83 (350)
                      +||||||++++..   ...+... ++||+++||++|+++||+|++||++.+.+.++++|+++||||||||+.+++|.+  
T Consensus         2 ~kPiIGI~~~~~~---~~~~~~~~~~yi~~sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~~~--   76 (288)
T d1l9xa_           2 KKPIIGILMQKCR---NKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSD--   76 (288)
T ss_dssp             CCCEEEEECEECC---SHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCH--
T ss_pred             CCCEEEEeCCccc---CcccccchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCccccc--
Confidence            6899999998754   2222333 799999999999999999999999999999999999999999999998876322  


Q ss_pred             cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047         84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC  163 (350)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC  163 (350)
                                     |.+                                     ..+.++++++..++.++++||||||
T Consensus        77 ---------------~~~-------------------------------------~~r~~~~~~l~~~~~~~~~PilGIC  104 (288)
T d1l9xa_          77 ---------------YAK-------------------------------------VAKIFYNLSIQSFDDGDYFPVWGTC  104 (288)
T ss_dssp             ---------------HHH-------------------------------------HHHHHHHHHHHHHHTTCCCCEEEET
T ss_pred             ---------------ccc-------------------------------------cchHHHHHHHHHHHhhCCCCeEEEc
Confidence                           211                                     1123667777777777779999999


Q ss_pred             HHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccc-ccccc
Q psy14047        164 LGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLAKE  242 (350)
Q Consensus       164 ~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~-~L~~~  242 (350)
                      +|||+|+.++||++. .......+...++..+.....+.++...+..+...+.....++++|++++.+..+... .|+++
T Consensus       105 ~G~Qll~~~~gG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~H~~~v~~~~~~~~~~l~~~  183 (288)
T d1l9xa_         105 LGFEELSLLISGECL-LTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKF  183 (288)
T ss_dssp             HHHHHHHHHHHSSCC-CEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhCCEee-ccccCcCCcceeEEecCCCccceeEeecccchhhhccCCceEEEecccEEEecccchhhhcCCc
Confidence            999999999999864 3333344455566666656677889999988888888888899999999976655433 68999


Q ss_pred             ceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHHHH
Q psy14047        243 WKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEE  322 (350)
Q Consensus       243 ~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~~~  322 (350)
                      ++++|++ .|+..++|++++++++||||+|||||++.+||.+...++|+.++++.++++.++|+++||+|+|+|.+.+++
T Consensus       184 ~~v~a~s-~d~~~e~I~~ie~~~~pi~GvQfHPEk~~fE~~~~~~~~H~~~~~~~~~~~~~ffv~~~rkn~~~f~~~~~~  262 (288)
T d1l9xa_         184 FNVLTTN-TDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEE  262 (288)
T ss_dssp             EEEEEEE-ESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSCCCCSSHHHH
T ss_pred             eEEEEEE-CCCCeEEEEEEEcCCCcEEEEEcCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Confidence            9999998 777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcccceeeeccCCCCceEEeecC
Q psy14047        323 KAALIYNYCPEYTAYIPGIGYDQTYLFK  350 (350)
Q Consensus       323 ~~~l~~n~~~~~~~~~~~~~~~~~~~~~  350 (350)
                      .+.||+||+|+|++..  .+|+|+|||+
T Consensus       263 ~~~lI~ny~pv~~~~~--~~~~q~Y~f~  288 (288)
T d1l9xa_         263 EKALIYQFSPIYTGNI--SSFQQCYIFD  288 (288)
T ss_dssp             HHHSGGGCCCEECTTT--SSCSEEEEEC
T ss_pred             HHHhhcCCCcEEecCC--CceEEEEeeC
Confidence            9999999999999754  5799999996

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.3e-28  Score=214.75  Aligned_cols=176  Identities=16%  Similarity=0.292  Sum_probs=128.2

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...+++|++.|+.+.++|++.+.+.    ++++||||++||+.+.+.                                 
T Consensus        15 ~~i~r~l~~lg~~~~i~~~d~~~~~----~~~~dgiIl~Gg~~~~~~---------------------------------   57 (196)
T d2a9va1          15 HREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGAPNIDE---------------------------------   57 (196)
T ss_dssp             CHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEECSCGGG---------------------------------
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCHHH----HhcCCcEEEecccccccc---------------------------------
Confidence            4567899999999999998766543    567899999998754320                                 


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                         +.+...    .+.+++.+   .+  +||||||+|||+|+.++||++. ..... ......+
T Consensus        58 -------------------~~~~~~----~l~~~~~~---~~--~PilGIC~G~Qll~~~~gg~~~-~~~~~-~~~~~~~  107 (196)
T d2a9va1          58 -------------------ELDKLG----SVGKYIDD---HN--YPILGICVGAQFIALHFGASVV-KAKHP-EFGKTKV  107 (196)
T ss_dssp             -------------------TGGGHH----HHHHHHHH---CC--SCEEEETHHHHHHHHHTTCEEE-EEEEE-EEEEEEE
T ss_pred             -------------------ccchhh----hHHHHHhh---cC--ceEEEeehhhhhhhhccccccc-ccccc-ccccceE
Confidence                               011111    24444443   33  9999999999999999999864 22211 1112222


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..   ...+++|.+++..+        .++++|++.+.       .+|++++++|++ +++.   ++++++++.|+||+|
T Consensus       108 ~~---~~~~~l~~~~~~~~--------~~~~~H~~~v~-------~~~~~~~v~a~~-~~~~---v~ai~~~~~~i~gvQ  165 (196)
T d2a9va1         108 SV---MHSENIFGGLPSEI--------TVWENHNDEII-------NLPDDFTLAASS-ATCQ---VQGFYHKTRPIYATQ  165 (196)
T ss_dssp             EE---SCCCGGGTTCCSEE--------EEEEEEEEEEE-------SCCTTEEEEEEC-SSCS---CSEEEESSSSEEEES
T ss_pred             EE---ecCCccccCCCCce--------EEEecceeEEE-------eCCCccceeecc-cccc---hheEEECCCCEEEEE
Confidence            22   24567888776654        58999999997       899999999997 6555   789999999999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      ||||+..++               .++.|+++|++.|++.
T Consensus       166 fHPE~~~s~---------------~G~~il~~F~~~~~~~  190 (196)
T d2a9va1         166 FHPEVEHTQ---------------YGRDIFRNFIGICASY  190 (196)
T ss_dssp             SCTTSTTST---------------THHHHHHHHHHHHHHH
T ss_pred             eCcccCCCc---------------cHHHHHHHHHHHHHHH
Confidence            999976432               3789999999999764

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4e-26  Score=202.91  Aligned_cols=175  Identities=17%  Similarity=0.241  Sum_probs=127.4

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...++.|++.|..+.++|++.+.+++.+  .+.|||+|+|||.+..  +                               
T Consensus        51 ~~ilr~l~~~~~~~~v~p~~~~~~~i~~--~~pdgivlS~GPg~P~--~-------------------------------   95 (228)
T d1a9xb2          51 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGDPA--P-------------------------------   95 (228)
T ss_dssp             HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBCST--T-------------------------------
T ss_pred             HHhHhHHHhcCceEEEcCCCCCHHHHHh--cCCCEEEEeCCCCccc--c-------------------------------
Confidence            4466999999999999999988777654  4789999999996531  1                               


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                           ..      ...+.++++.+.+  +||||||+|||+|+.++||++. ....+.++...++
T Consensus        96 ---------------------~~------~~~~~~~~~~~~~--iPILGIClG~Qlia~~~Gg~v~-k~~~~~~G~~~~~  145 (228)
T d1a9xb2          96 ---------------------CD------YAITAIQKFLETD--IPVFGICLGHQLLALASGAKTV-KMKFGHHGGNHPV  145 (228)
T ss_dssp             ---------------------CH------HHHHHHHHHTTSC--CCEEEETHHHHHHHHHTTCCEE-EEEEEEEEEEEEE
T ss_pred             ---------------------ch------hHHHHHHHHHhCC--CCEEEEEcChHHHHHHcCCcee-ecccccccccccc
Confidence                                 11      1234455555444  9999999999999999999975 4555556655554


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ...    ...++              ..+..+|++.+...     .++..+.+++.+.+|+.   ++++++++.|+||+|
T Consensus       146 ~~~----~~~~~--------------~~~~~~~~~~~~~~-----~~~~~~~v~~~s~~d~~---i~ai~h~~~~i~gVQ  199 (228)
T d1a9xb2         146 KDV----EKNVV--------------MITAQNHGFAVDEA-----TLPANLRVTHKSLFDGT---LQGIHRTDKPAFSFQ  199 (228)
T ss_dssp             EET----TTTEE--------------EEEEEEEEEEECST-----TCCTTEEEEEEETTTCC---EEEEEESSSSEEEES
T ss_pred             ccc----cccee--------------eeecccccceeccc-----ccccceEEEEEecCCCc---EEEEEECCCCEEEEe
Confidence            321    11111              13567788777644     56778888888733444   999999999999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      ||||...++.              ++..+|++|++.|++.
T Consensus       200 FHPE~~~t~~--------------dg~~l~~nFl~~i~~~  225 (228)
T d1a9xb2         200 GNPEASPGPH--------------DAAPLFDHFIELIEQY  225 (228)
T ss_dssp             SCTTCSSSCS--------------TTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcc--------------cHHHHHHHHHHHHHHH
Confidence            9999886532              3678999999998754

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=1.2e-25  Score=195.60  Aligned_cols=177  Identities=17%  Similarity=0.234  Sum_probs=120.7

Q ss_pred             HHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHH
Q psy14047         35 YVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEK  113 (350)
Q Consensus        35 yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (350)
                      .+++|++.|+.+.+++.+. +.+.+.+  ...+||+++||+.+..  .                                
T Consensus        17 i~~~l~~lG~~~~vi~~d~~~~~~i~~--~~~~gvilsgGp~~~~--~--------------------------------   60 (195)
T d1qdlb_          17 IAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPE--K--------------------------------   60 (195)
T ss_dssp             HHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTT--S--------------------------------
T ss_pred             HHHHHHhCCCeEEEEeCCCCCHHHHHh--hCCCccccCCCCCccc--c--------------------------------
Confidence            3678999999999999864 4455543  3579999999986542  0                                


Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeece
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE  193 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~  193 (350)
                                         ...+.     ....+.++.+++  +||||||+|||+|+.++||.+. ......++....+ 
T Consensus        61 -------------------~~~~~-----~~~~i~~~~~~~--~PiLGIClG~Qll~~~~G~~v~-~~~~~~~~~~~~~-  112 (195)
T d1qdlb_          61 -------------------REDIG-----VSLDVIKYLGKR--TPILGVCLGHQAIGYAFGAKIR-RARKVFHGKISNI-  112 (195)
T ss_dssp             -------------------HHHHT-----THHHHHHHHTTT--SCEEEETHHHHHHHHHTTCEEE-EEEEEEEEEEEEE-
T ss_pred             -------------------ccccc-----cchhhhhhhcCC--CCEEEeehhhhhhhhccCCEEE-eeccccccccccc-
Confidence                               01111     112233444454  9999999999999999999975 3332223322222 


Q ss_pred             eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047        194 FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQF  273 (350)
Q Consensus       194 ~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf  273 (350)
                      .........+|.+++..+        .++++|++.+.       .++..+.+++.+.+++.   +++++++++|+||+||
T Consensus       113 ~~~~~~~~~lf~~~~~~~--------~~~~~h~~~~~-------~~~~~~~~~~~~~~~~~---i~ai~~~~~~i~GvQF  174 (195)
T d1qdlb_         113 ILVNNSPLSLYYGIAKEF--------KATRYHSLVVD-------EVHRPLIVDAISAEDNE---IMAIHHEEYPIYGVQF  174 (195)
T ss_dssp             EECCSSCCSTTTTCCSEE--------EEEEEEEEEEE-------CCCTTEEEEEEESSSCC---EEEEEESSSSEEEESS
T ss_pred             ccccccccccccCCCccc--------eeeecceeeee-------ccccCcccceeccCCCc---EEEEEECCCCEEEEEc
Confidence            222334455787776643        68999999886       66777777766523443   8999999999999999


Q ss_pred             cCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        274 HPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       274 HPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      |||++.++               .+..++++|++.
T Consensus       175 HPE~~~s~---------------~G~~il~nFl~~  194 (195)
T d1qdlb_         175 HPESVGTS---------------LGYKILYNFLNR  194 (195)
T ss_dssp             BTTSTTCT---------------THHHHHHHHHHH
T ss_pred             CCCCCCCc---------------chHHHHHHHHhh
Confidence            99987532               377899999875

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.94  E-value=1.3e-25  Score=194.90  Aligned_cols=174  Identities=15%  Similarity=0.157  Sum_probs=122.7

Q ss_pred             HHHHHHHcCCeEEEEecCCCHHHHHHhhc--ccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         35 YVKAVEASGARVAPIFIGNPEAYYRKILG--QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        35 yv~~l~~~G~~~v~i~~~~~~~~~~~~l~--~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      .++.|++.|+.++++|.+.+.+...+.++  ..+||+++||+.+..  +                               
T Consensus        16 i~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~--~-------------------------------   62 (192)
T d1i7qb_          16 LVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPS--E-------------------------------   62 (192)
T ss_dssp             HHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGG--G-------------------------------
T ss_pred             HHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCcccccc--c-------------------------------
Confidence            47889999999999999877655433333  568888888875421  0                               


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                          ....        ..+++..+.+  +||||||+|||+|+.++||++. ......++....+
T Consensus        63 --------------------~~~~--------~~i~~~l~~~--iPiLGIClG~Q~la~~~Gg~v~-~~~~~~~g~~~~~  111 (192)
T d1i7qb_          63 --------------------AGCM--------PELLQRLRGQ--LPIIGICLGHQAIVEAYGGQVG-QAGEILHGKASAI  111 (192)
T ss_dssp             --------------------STTH--------HHHHHHHBTT--BCEEEETHHHHHHHHHTTCEEE-EEEEEEEEEEEEE
T ss_pred             --------------------cccc--------hhhHHhhhcC--ccEEeeeHHHHHHHHHCCCeEE-ECCcccccceEEE
Confidence                                0011        1122233344  9999999999999999999975 3333334433333


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..    ....+|...+..        ..++++|++.+.       .++++++++|++  ++   .+++++++++|+||+|
T Consensus       112 ~~----~~~~l~~~~~~~--------~~~~~~h~~~~~-------~~~~~~~~~a~~--~~---~i~ai~~~~~~i~GvQ  167 (192)
T d1i7qb_         112 AH----DGEGMFAGMANP--------LPVARYHSLVGS-------NIPADLTVNARF--GE---MVMAVRDDRRRVCGFQ  167 (192)
T ss_dssp             EE----CCCGGGTTCCSS--------EEEEEEEEEEEE-------SCCTTSEEEEEE--TT---EEEEEEETTTTEEEES
T ss_pred             ee----cCCCceeecccc--------ceEEeecccccc-------cccceeeeecCC--CC---eeEEEEECCCCEEEEE
Confidence            22    244577666553        368999999997       789999999974  44   3899999999999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG  311 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~  311 (350)
                      ||||...++               .+..++++|++.+..
T Consensus       168 FHPEs~~t~---------------~G~~il~nFl~~~~~  191 (192)
T d1i7qb_         168 FHPESILTT---------------HGARLLEQTLAWALA  191 (192)
T ss_dssp             SCTTSTTST---------------THHHHHHHHHHHHHC
T ss_pred             eCCCcCCCC---------------ChHHHHHHHHHHHhc
Confidence            999966432               378899999987643

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1.1e-24  Score=189.48  Aligned_cols=187  Identities=20%  Similarity=0.248  Sum_probs=115.2

Q ss_pred             CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047          7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA   86 (350)
Q Consensus         7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~   86 (350)
                      ..|||+..+..              -.+.+++|+++|+.++.+...   +    -|+++||||||||..+..        
T Consensus         2 ~~igv~~~~G~--------------~~~~~~al~~~G~~~~~i~~~---~----~l~~~D~lIlPGG~~~~~--------   52 (195)
T d2nv0a1           2 LTIGVLGLQGA--------------VREHIHAIEACGAAGLVVKRP---E----QLNEVDGLILPGGESTTM--------   52 (195)
T ss_dssp             CEEEEECSSSC--------------CHHHHHHHHHTTCEEEEECSG---G----GGGGCSEEEECCSCHHHH--------
T ss_pred             cEEEEEecCCh--------------HHHHHHHHHHCCCcEEEECCH---H----HHhhCCEEEECCCCccHH--------
Confidence            36999876532              166789999999999988532   1    267889999999864321        


Q ss_pred             ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047         87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF  166 (350)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~  166 (350)
                                                                    .......  .+.+.++++.++|  +|+||||+||
T Consensus        53 ----------------------------------------------~~~~~~~--~~~~~I~~~~~~g--~pilGIC~G~   82 (195)
T d2nv0a1          53 ----------------------------------------------RRLIDTY--QFMEPLREFAAQG--KPMFGTCAGL   82 (195)
T ss_dssp             ----------------------------------------------HHHHHHT--TCHHHHHHHHHTT--CCEEEETHHH
T ss_pred             ----------------------------------------------HHHhhhc--hhcchhhhhhhhc--ceeeeccccH
Confidence                                                          0001110  2456667777777  9999999999


Q ss_pred             HHHHHHhcCcc-ccCCccCceeeeeece-eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccce
Q psy14047        167 QLLLYTSNNEN-ELRTRCDCFYENLALE-FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWK  244 (350)
Q Consensus       167 QlLa~a~Gg~v-~~~~~~~~~~~~~~i~-~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~  244 (350)
                      |+|+..++|.. ..+...+......... .+.....+.++..++.        ...++++|++.+.       .++++++
T Consensus        83 Qll~~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~h~~~~~-------~~~~~~~  147 (195)
T d2nv0a1          83 IILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDE--------PFTGVFIRAPHIL-------EAGENVE  147 (195)
T ss_dssp             HHHSBCCC----CCCCCSCEEEECCCSCTTTSEEEEEECCTTCSS--------CEEEEEESCCEEE-------EECTTCE
T ss_pred             HHHHhhhcccccccccccccccccccccccceeeeeeecccCCCC--------CceEEEEeeeEEE-------ecCCCce
Confidence            99999887642 2222222111111000 0000111223333332        3457889999997       7899999


Q ss_pred             EEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        245 VLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       245 vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      ++|++  ++.   +.+++..  +++|+|||||++..                  .++.++|++.|+..
T Consensus       148 vla~~--~~~---~~a~~~~--ni~g~QFHPE~s~~------------------~~~~~~F~~~~~~~  190 (195)
T d2nv0a1         148 VLSEH--NGR---IVAAKQG--QFLGCSFHPELTED------------------HRVTQLFVEMVEEY  190 (195)
T ss_dssp             EEEEE--TTE---EEEEEET--TEEEESSCTTSSSC------------------CHHHHHHHHHHHHH
T ss_pred             eeeeE--CCE---EEEEEEC--CEEEEEeCCcccCC------------------cHHHHHHHHHHHHH
Confidence            99984  443   4466654  69999999998741                  24666777777543

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.7e-24  Score=193.05  Aligned_cols=163  Identities=17%  Similarity=0.201  Sum_probs=111.5

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ..+.++|++.|..+..+...... .+..-++.+||||++||+.++.-.                                
T Consensus        18 G~~~~~l~~~g~~~~~~~~~~~~-~~p~~l~~~d~iii~Ggp~~~~d~--------------------------------   64 (230)
T d1o1ya_          18 GMMEDIFREKNWSFDYLDTPKGE-KLERPLEEYSLVVLLGGYMGAYEE--------------------------------   64 (230)
T ss_dssp             THHHHHHHHTTCEEEEECGGGTC-CCSSCGGGCSEEEECCCSCCTTCT--------------------------------
T ss_pred             HHHHHHHHHCCCEEEEEECCCCC-cCCcchhhCCEEEEcCCCcccccc--------------------------------
Confidence            56778999999988777654221 111125667888888887655310                                


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                         +...|..   .+.++++++.+++  +||||||+|||+|+.++||++. ......+..... 
T Consensus        65 -------------------~~~~~~~---~~~~~i~~~~~~~--~PilGIC~G~Qlla~alGg~V~-~~~~~~~~~~~~-  118 (230)
T d1o1ya_          65 -------------------EKYPFLK---YEFQLIEEILKKE--IPFLGICLGSQMLAKVLGASVY-RGKNGEEIGWYF-  118 (230)
T ss_dssp             -------------------TTCTHHH---HHHHHHHHHHHHT--CCEEEETHHHHHHHHHTTCCEE-ECTTCCEEEEEE-
T ss_pred             -------------------hhhhhhH---HHHHHHHHHHHhc--ceEEEeecCHHHHHHHhccccc-cccccccccccc-
Confidence                               0112322   2455666666665  9999999999999999999975 333333332222 


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                        +.....+++|+++++.+        .++++|.+.+        ++|++++++|++ +.+.   +++++.+  ++||+|
T Consensus       119 --~~~~~~~~l~~~~~~~~--------~~~~~H~d~~--------~lp~~~~~la~s-~~~~---~qa~~~~--~~~g~Q  174 (230)
T d1o1ya_         119 --VEKVSDNKFFREFPDRL--------RVFQWHGDTF--------DLPRRATRVFTS-EKYE---NQGFVYG--KAVGLQ  174 (230)
T ss_dssp             --EEECCCCGGGTTSCSEE--------EEEEEESEEE--------CCCTTCEEEEEC-SSCS---CSEEEET--TEEEES
T ss_pred             --cccccchhhhccCCccc--------eEEEecceee--------eeccchhhhhhh-cCCc---eEEEEec--CEeEEE
Confidence              22334677888887754        5899999855        799999999997 6666   6688775  699999


Q ss_pred             ccCCcC
Q psy14047        273 FHPEKN  278 (350)
Q Consensus       273 fHPE~~  278 (350)
                      ||||.+
T Consensus       175 fHPE~~  180 (230)
T d1o1ya_         175 FHIEVG  180 (230)
T ss_dssp             SBSSCC
T ss_pred             eCCCCC
Confidence            999965

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=8.3e-25  Score=191.33  Aligned_cols=190  Identities=21%  Similarity=0.274  Sum_probs=118.2

Q ss_pred             CCCC-EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCc
Q psy14047          4 TERP-IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDG   82 (350)
Q Consensus         4 ~~~p-~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~   82 (350)
                      +++| .|||+..+.+              ..+.+++|+++|+.++.+..   .+    -|+.+||||||||..+..    
T Consensus         3 ~~~~mkIgii~~~Gn--------------~~s~~~al~~~G~~~~~v~~---~~----~l~~~D~lIlPGG~~~~~----   57 (202)
T d1q7ra_           3 FQSNMKIGVLGLQGA--------------VREHVRAIEACGAEAVIVKK---SE----QLEGLDGLVLPGGESTTM----   57 (202)
T ss_dssp             CCCCCEEEEESCGGG--------------CHHHHHHHHHTTCEEEEECS---GG----GGTTCSEEEECCCCHHHH----
T ss_pred             cccCCEEEEEECCCC--------------HHHHHHHHHHCCCcEEEECC---HH----HHhcCCEEEECCCCcHHH----
Confidence            3444 6999976432              17778999999999998853   22    267889999999764321    


Q ss_pred             ccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047         83 YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI  162 (350)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI  162 (350)
                                                                        +......  .+.++++++.++|  +|||||
T Consensus        58 --------------------------------------------------~~~l~~~--~l~~~I~~~~~~g--kPiLGI   83 (202)
T d1q7ra_          58 --------------------------------------------------RRLIDRY--GLMEPLKQFAAAG--KPMFGT   83 (202)
T ss_dssp             --------------------------------------------------HHHHHHT--TCHHHHHHHHHTT--CCEEEE
T ss_pred             --------------------------------------------------HHHhhhh--HHHHHHhhhcccc--ceeeee
Confidence                                                              1111111  3567788888887  999999


Q ss_pred             hHHHHHHHHHhcCccc-cCCccCceeeeeecee-ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccc
Q psy14047        163 CLGFQLLLYTSNNENE-LRTRCDCFYENLALEF-MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA  240 (350)
Q Consensus       163 C~G~QlLa~a~Gg~v~-~~~~~~~~~~~~~i~~-~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~  240 (350)
                      |+|||+|+..+++... .+...+.......... .........+...        ......+.+|+..+.       .++
T Consensus        84 ClG~Qll~~~~~~~~~~~lg~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-------~~~  148 (202)
T d1q7ra_          84 CAGLILLAKRIVGYDEPHLGLMDITVERNSFGRQRESFEAELSIKGV--------GDGFVGVFIRAPHIV-------EAG  148 (202)
T ss_dssp             TTHHHHHEEEEESSCCCCCCCEEEEEECHHHHCCCCCEEEEEEETTT--------EEEEEEEESSCCEEE-------EEC
T ss_pred             ehhhHHhhhhccccceeecccccccccccccccccccceeccccccc--------cCCcceEEEeecccc-------ccc
Confidence            9999999987665421 1111111110000000 0000001112222        223456778888887       789


Q ss_pred             ccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       241 ~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      ++++++|+.  ++.   +.+++..  ++||+|||||++.                  +.+++++|++.|++.
T Consensus       149 ~~~~~~a~~--~~~---~~a~~~g--ni~G~QFHPEkS~------------------~~~il~~Fl~~~~~~  195 (202)
T d1q7ra_         149 DGVDVLATY--NDR---IVAARQG--QFLGCSFHPELTD------------------DHRLMQYFLNMVKEA  195 (202)
T ss_dssp             TTCEEEEEE--TTE---EEEEEET--TEEEESSCGGGSS------------------CCHHHHHHHHHHHHH
T ss_pred             cceeEEeec--CCE---EEEEEeC--CEEEEEeCCccCC------------------ChHHHHHHHHHHHHh
Confidence            999999984  433   4566644  6999999999874                  235889999988764

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=8.3e-24  Score=185.18  Aligned_cols=180  Identities=17%  Similarity=0.199  Sum_probs=118.5

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE  112 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (350)
                      ...+++|++.|+...++|++.+.+.+..  ...+|++++||+.+..  +..                             
T Consensus        19 ~~I~r~lr~lg~~~~I~~~d~~~~~~~~--~~~~giils~gp~~~~--~~~-----------------------------   65 (205)
T d1gpma2          19 QLVARRVRELGVYCELWAWDVTEAQIRD--FNPSGIILSGGPESTT--EEN-----------------------------   65 (205)
T ss_dssp             HHHHHHHHHTTCEEEEEESCCCHHHHHH--HCCSEEEECCCSSCTT--STT-----------------------------
T ss_pred             HHHHHHHHHCCCEEEEECCCCCHHHHhh--cCCCeEEecCCCCccc--hhh-----------------------------
Confidence            4567899999999999999877766653  4789999999996542  100                             


Q ss_pred             HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                                            .+        ..+.+..+.+  +||||||+|||+|+.++||++. ......++... +
T Consensus        66 ----------------------~~--------~~~~~~~~~~--~PiLGIClG~Qlla~~~Gg~v~-~~~~~~~G~~~-~  111 (205)
T d1gpma2          66 ----------------------SP--------RAPQYVFEAG--VPVFGVCYGMQTMAMQLGGHVE-ASNEREFGYAQ-V  111 (205)
T ss_dssp             ----------------------CC--------CCCGGGGTSS--SCEEEETHHHHHHHHHHTCEEE-CCSSCEEEEEE-E
T ss_pred             ----------------------hh--------hHHHHHHhCC--CCEEEeccchhhhhhhcCCccc-cccccccCcce-e
Confidence                                  00        0011122333  9999999999999999999975 34434444322 2


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ...   ....++.+.+............++.+|++.+.       .+++...+++++ .++.   ++++.+++.|+||+|
T Consensus       112 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-------~~~~~~~~~~~~-~~~~---~~~~~~~~~ni~gvQ  177 (205)
T d1gpma2         112 EVV---NDSALVRGIEDALTADGKPLLDVWMSHGDKVT-------AIPSDFITVAST-ESCP---FAIMANEEKRFYGVQ  177 (205)
T ss_dssp             EEC---SCCTTTTTCCSEECTTSCEEEEEEEEECSEEE-------ECCTTCEEEEEC-SSCS---CSEEEETTTTEEEES
T ss_pred             ccc---cccccccccccccccCCccceeeecccccccc-------cccccceeeecc-CCCc---eEEEEeCCCCEEEEE
Confidence            211   12223333332221111122357888988887       678888888874 4444   567778888999999


Q ss_pred             ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      ||||++.++               .+..|+++|+..
T Consensus       178 FHPE~s~s~---------------~G~~il~nFl~~  198 (205)
T d1gpma2         178 FHPEVTHTR---------------QGMRMLERFVRD  198 (205)
T ss_dssp             BCTTSTTST---------------THHHHHHHHHHT
T ss_pred             eecccCCCc---------------cHHHHHHHHHHH
Confidence            999987542               378899999865

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=9.8e-23  Score=177.55  Aligned_cols=155  Identities=20%  Similarity=0.258  Sum_probs=93.7

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee-ece
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL-ALE  193 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~-~i~  193 (350)
                      .+.+|+||+||+|++...++.+...  .+.+.++++.+++  +||||||+|||+|+...++... ........... ...
T Consensus        40 ~~~~D~lIlPG~G~f~~~~~~l~~~--~~~~~i~~~~~~~--~PiLGIClG~QlL~~~~~~~~~-~~~~~~~~~~~~~~~  114 (200)
T d1k9vf_          40 NDLYDLLFIPGVGHFGEGMRRLREN--DLIDFVRKHVEDE--RYVVGVCLGMQLLFEESEEAPG-VKGLSLIEGNVVKLR  114 (200)
T ss_dssp             SCCCSEEEECCCSCHHHHHHHHHHT--TCHHHHHHHHHTT--CEEEEETHHHHTTEEEETTSTT-CCCCCCEEEEEEECS
T ss_pred             hhccCeEEEcChHHHHHHHHhhhcc--ccccccccccccc--ceEEEEecceeEEeeecccCcc-ccccccccccccccc
Confidence            3568999999999876655666543  3678888888777  9999999999999976543321 11111111100 000


Q ss_pred             e--ecCCCCCc-ccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        194 F--MPSFRQSL-LYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       194 ~--~~~~~~~~-lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      .  +....+.. .+...        .....+++.|++.+.+        .+...+.++  ..++..++++++..  ++||
T Consensus       115 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~hs~~~~~--------~~~~~~~~~--~~~~~~~~a~v~~~--ni~G  174 (200)
T d1k9vf_         115 SRRLPHMGWNEVIFKDT--------FPNGYYYFVHTYRAVC--------EEEHVLGTT--EYDGEIFPSAVRKG--RILG  174 (200)
T ss_dssp             CSSCSEEEEEEEEESSS--------SCCEEEEEEESEEEEE--------CGGGEEEEE--EETTEEEEEEEEET--TEEE
T ss_pred             ccccccccccccccccc--------CCceEEEEeeeeeecc--------cccceEEEE--EECCeEEEEEEEcC--CEEE
Confidence            0  00000000 01110        1123578888888752        223333333  33445667788864  7999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS  310 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~  310 (350)
                      +|||||++.                +.+..|+++|++.+-
T Consensus       175 vQFHPEkS~----------------~~G~~ll~nFl~~~~  198 (200)
T d1k9vf_         175 FQFHPEKSS----------------KIGRKLLEKVIECSL  198 (200)
T ss_dssp             ESSBGGGSH----------------HHHHHHHHHHHHHHH
T ss_pred             EeCCCcccc----------------hhHHHHHHHHHhhhh
Confidence            999999762                247899999999874

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.84  E-value=1.4e-20  Score=165.65  Aligned_cols=193  Identities=21%  Similarity=0.236  Sum_probs=105.7

Q ss_pred             EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047          8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG   87 (350)
Q Consensus         8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~   87 (350)
                      .|||++.+...              .+.+++|+++|...+.+....+.++    |+++||||||||+....         
T Consensus         4 kIGvl~l~G~~--------------~~~~~al~~lg~~~~~v~~~~~~~~----l~~~D~lIlPGgg~~~~---------   56 (218)
T d2abwa1           4 TIGVLSLQGDF--------------EPHINHFIKLQIPSLNIIQVRNVHD----LGLCDGLVIPGGESTTV---------   56 (218)
T ss_dssp             EEEEECTTSCC--------------HHHHHHHHTTCCTTEEEEEECSHHH----HHTCSEEEECCSCHHHH---------
T ss_pred             EEEEEeCCCcH--------------HHHHHHHHHcCCCceEEEEeCCHHH----HhhCCEEEEcCCCccHH---------
Confidence            69999765321              6778899999976555555455544    45788888888763211         


Q ss_pred             eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHH-HHHHHHHHHHHHHHh-hCCCCccEEEehHH
Q psy14047         88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGY-AKAGAMIYKIAKEFN-ENRDYFPIMGICLG  165 (350)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~-~~~~~~l~~~i~~~~-~~g~~~PIlGIC~G  165 (350)
                                                                  .+..+ ...  .+.+.++++. +.|  +||||||+|
T Consensus        57 --------------------------------------------~~~~~~~~~--~~~~~i~~~~~~~g--kPilGIC~G   88 (218)
T d2abwa1          57 --------------------------------------------RRCCAYEND--TLYNALVHFIHVLK--KPIWGTCAG   88 (218)
T ss_dssp             --------------------------------------------HHHTTHHHH--HHHHHHHHHHHTSC--CCEEEETHH
T ss_pred             --------------------------------------------HHHHHHHhc--cchHHHHHHHHHcC--CeEEEecHH
Confidence                                                        01111 111  2334444443 345  999999999


Q ss_pred             HHHHHHHhcCccccCCc--cCcee---eeeece-----------eecCCCCCcccccCCchhHHhhcccceEEEeeccee
Q psy14047        166 FQLLLYTSNNENELRTR--CDCFY---ENLALE-----------FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCI  229 (350)
Q Consensus       166 ~QlLa~a~Gg~v~~~~~--~~~~~---~~~~i~-----------~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v  229 (350)
                      ||+|+..+++.......  .....   ......           .+.....+.++.....        ...+++.|++.+
T Consensus        89 ~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~y~~h~~~~  160 (218)
T d2abwa1          89 CILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLT--------AACIRAPYIREI  160 (218)
T ss_dssp             HHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTCE--------EEEESCCEEEEE
T ss_pred             HHHHHHhccCCccccccccccccccccccceecccCCcccccccceeeccCCccccCccc--------ceeEEeeEEEEe
Confidence            99999876654321000  00000   000000           0001111222222111        113344455544


Q ss_pred             ecCCCccccccccceEEEEee-cCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        230 TPSNFTDNGLAKEWKVLSTNS-NNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       230 ~~~~~~~~~L~~~~~vla~s~-~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                               ++++..++++.. ..++..++++|+..  +++|+|||||++.                  ..+++++|++.
T Consensus       161 ---------~~~~~~~~a~~~~~~~g~~~i~av~~~--ni~G~QFHPE~s~------------------d~r~~~~F~~~  211 (218)
T d2abwa1         161 ---------LSDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPELLP------------------HTAFQQYFYEK  211 (218)
T ss_dssp             ---------CCTTCEEEEEEEETTTEEEEEEEEEET--TEEEESSCGGGSS------------------CCHHHHHHHHH
T ss_pred             ---------ecCChhhheeeccccCCCeEEEEEecC--CEEEEEcCCeecC------------------CchHHHHHHHH
Confidence                     355566766531 22345688999865  6999999999874                  12577888888


Q ss_pred             HHcC
Q psy14047        309 ASGS  312 (350)
Q Consensus       309 ~~~~  312 (350)
                      .++.
T Consensus       212 v~~~  215 (218)
T d2abwa1         212 VKNY  215 (218)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7653

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=8.9e-21  Score=168.15  Aligned_cols=171  Identities=20%  Similarity=0.274  Sum_probs=105.9

Q ss_pred             HHhccCCEEEeCCCCCCcccchHHH-HHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCcee----
Q psy14047        113 KILGQVNGVLIPGGGASFYADDGYA-KAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFY----  187 (350)
Q Consensus       113 ~~l~~~dgvIipG~g~~~~~~~~~~-~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~----  187 (350)
                      +.|+++|||++|||...    ..++ +.  ..++++++.     ++|+||||+|||+++.++..++.++.+..+..    
T Consensus        53 ~~L~~~dGIlvPGGFG~----RG~eGki--~ai~yARen-----~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~  121 (258)
T d1s1ma1          53 EILKGLDAILVPGGFGY----RGVEGMI--TTARFAREN-----NIPYLGICLGMQVALIDYARHVANMENANSTEFVPD  121 (258)
T ss_dssp             TTTTTCSEEEECCCCSS----TTHHHHH--HHHHHHHHT-----TCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSS
T ss_pred             ccccccccEEeecccCc----CCHHHHH--HHHHHHHHc-----CccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCC
Confidence            45889999999998663    3332 11  245666663     39999999999999999988764444332211    


Q ss_pred             eeeece-eecC-----------------CCCCcc----cccCCchhHHhhcccceE--EEeecceeecCCCccccccccc
Q psy14047        188 ENLALE-FMPS-----------------FRQSLL----YSRAPIHVLQELATSHIT--HNWHMWCITPSNFTDNGLAKEW  243 (350)
Q Consensus       188 ~~~~i~-~~~~-----------------~~~~~l----f~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~L~~~~  243 (350)
                      ...|+- +.+.                 +....|    ....+.+.+..+.....+  -+.|+|.+.+.... .-...++
T Consensus       122 t~~pvi~~~~~~~~~~~~~~~~~~~~~~GgTmrlG~~~~~l~~~s~~~~~Y~~~~i~ERHRHRYevN~~y~~-~le~~gl  200 (258)
T d1s1ma1         122 CKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLK-QIEDAGL  200 (258)
T ss_dssp             CSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHH-HHHHTTC
T ss_pred             CCCCEEEecccccccCCceeEeecccCccccccCcccchhhhhHHHHHHhcCcceehhhhhcchhhhhhhhh-hhhcCCc
Confidence            111211 1000                 000000    111244555556555444  45667766532111 0124699


Q ss_pred             eEEEEeecCCCceEEEEEEcCCccE-EEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        244 KVLSTNSNNRGLKFISSVEHKVYPF-AGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       244 ~vla~s~~~~~~e~v~ai~~~~~~i-~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      ++.+.+ .++.  .++++|.+++|| +|+|||||..     +++..||         .+|..|+.+|.++
T Consensus       201 ~~sG~s-~dg~--~vEiiEl~~HPffvg~QfHPEf~-----Srp~~p~---------PLF~~Fi~Aa~~~  253 (258)
T d1s1ma1         201 RVAGRS-GDDQ--LVEIIEVPNHPWFVACQFHPEFT-----STPRDGH---------PLFAGFVKAASEF  253 (258)
T ss_dssp             EEEEEC-SSSC--CEEEEECTTSSSEEEESSCGGGT-----CCTTTCC---------HHHHHHHHHHHHH
T ss_pred             eeeeec-CCCC--eEEEEEeCCCCeEEEecCCcccc-----CCCCCCC---------hHHHHHHHHHHHH
Confidence            999997 5554  489999999995 5999999955     4555555         6999999999664

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=2.4e-19  Score=158.32  Aligned_cols=175  Identities=25%  Similarity=0.326  Sum_probs=107.5

Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCcee---
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFY---  187 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~---  187 (350)
                      ..+.|+++|||++|||...    ..++-.. ..++++++.     ++|+||||+|||++...++.++.++....+..   
T Consensus        52 ~~~~L~~~dGIlvPGGFG~----rG~eGki-~ai~yARen-----~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~  121 (250)
T d1vcoa1          52 LEEAFRDVSGILVPGGFGV----RGIEGKV-RAAQYARER-----KIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDP  121 (250)
T ss_dssp             HHHHTTTCSCEEECCCCSS----TTHHHHH-HHHHHHHHT-----TCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCT
T ss_pred             HHHHHhcCCeEEecCCCCc----cchHHHH-HHHHHHHHc-----chhHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence            4578999999999998763    3332110 245666663     39999999999999999999875554432211   


Q ss_pred             -eeeec-eeecC-------CCCCcc----cccCCchhHHhhcccceE--EEeecceeecCCCccccc-cccceEEEEeec
Q psy14047        188 -ENLAL-EFMPS-------FRQSLL----YSRAPIHVLQELATSHIT--HNWHMWCITPSNFTDNGL-AKEWKVLSTNSN  251 (350)
Q Consensus       188 -~~~~i-~~~~~-------~~~~~l----f~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~  251 (350)
                       ...|+ .+.+.       +...+|    ..-.+.+.+..+.....+  -+.|+|.+.+....  .| ..++.+.+++ +
T Consensus       122 ~~~~pvi~~~~e~~~~~~~ggtmRLG~~~~~l~~~S~~~~~Y~~~~i~ERhRHRYevN~~y~~--~le~~gl~~sg~~-~  198 (250)
T d1vcoa1         122 HTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVD--GLERAGLVVSATT-P  198 (250)
T ss_dssp             TCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHH--HHHHHTEEEEEEC-C
T ss_pred             CCCCeEEEeeccceeccccCccccccceeeeecCCcHHHhhccccEEeehcccceeechhhhH--HHHhccccccccC-c
Confidence             01121 11110       111111    011244555556554444  45666666532111  22 3589999986 3


Q ss_pred             CC---CceEEEEEEcCCccEE-EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047        252 NR---GLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS  312 (350)
Q Consensus       252 ~~---~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~  312 (350)
                      +.   ....++++|.+++|+| |+|||||..     +++..||         .+|..|+.+|.+.
T Consensus       199 d~~~~~~~lvEiiEl~~HPffvgvQfHPEf~-----Srp~~ph---------PLF~~fi~Aal~~  249 (250)
T d1vcoa1         199 GMRGRGAGLVEAIELKDHPFFLGLQSHPEFK-----SRPMRPS---------PPFVGFVEAALAY  249 (250)
T ss_dssp             CBTTBSTTCEEEEEETTSSSEEEESSCGGGG-----CBTTBCC---------HHHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCcEEEecCCcccc-----CCCCCCC---------ccHHHHHHHHHhc
Confidence            31   1125899999999976 999999954     4455555         7999999999754

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.2e-18  Score=149.88  Aligned_cols=157  Identities=16%  Similarity=0.153  Sum_probs=85.0

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccc--cCCccCceeeeee
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENE--LRTRCDCFYENLA  191 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~--~~~~~~~~~~~~~  191 (350)
                      .++++|++|+||++++...+......  .+...+.+....|  +|+||||+|||+|+....+...  +............
T Consensus        35 ~i~~~d~lIlpG~g~~~~~~~~~~~~--~~~~~~~~~~~~g--~pilGiClG~qll~~~~~e~~~~~g~~~~~~~~~~~~  110 (195)
T d1ka9h_          35 AHEEADLLVLPGQGHFGQVMRAFQES--GFVERVRRHLERG--LPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFR  110 (195)
T ss_dssp             SCSSCSEEEECCCSCHHHHHHTTSSS--CTHHHHHHHHHTT--CCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECC
T ss_pred             HHHHHhhhhcCCCccccchhhhcccc--CCccccccccccc--chhhhhhhhhheeeeccccccccCCceeeeccccccc
Confidence            46788999999999876544333211  1334455555566  9999999999999965332211  1111111110000


Q ss_pred             ceeecCCCCCc-ccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047        192 LEFMPSFRQSL-LYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG  270 (350)
Q Consensus       192 i~~~~~~~~~~-lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g  270 (350)
                      ........+.. .+.....     .......++.|++.+.        .++.....++   .++.+++++++.+  ++||
T Consensus       111 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~~~a~v~~~--ni~G  172 (195)
T d1ka9h_         111 AGRVPQMGWNALEFGGAFA-----PLTGRHFYFANSYYGP--------LTPYSLGKGE---YEGTPFTALLAKE--NLLA  172 (195)
T ss_dssp             SSSSSEEEEEECEECGGGG-----GGTTCEEEEEESEECC--------CCTTCCEEEE---ETTEEEEEEEECS--SEEE
T ss_pred             ccccccccccccccccccc-----cccccccccccceeee--------ccccceeeee---cCCceEEEEEEcC--CEEE
Confidence            00000000000 0000000     0112356777887664        3333333333   3446678888865  7999


Q ss_pred             EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047        271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ  308 (350)
Q Consensus       271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~  308 (350)
                      +|||||++.                +.+..|.++|++.
T Consensus       173 vQFHPEkS~----------------~~G~~lL~nF~~~  194 (195)
T d1ka9h_         173 PQFHPEKSG----------------KAGLAFLALARRY  194 (195)
T ss_dssp             ESSCTTSSH----------------HHHHHHHHHHHHH
T ss_pred             EeCCccccc----------------HhHHHHHHHHHHh
Confidence            999999873                2478888888763

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=5.8e-16  Score=140.39  Aligned_cols=140  Identities=15%  Similarity=0.125  Sum_probs=90.4

Q ss_pred             ccCCEEEeCCCCCCc--ccch-HHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047        116 GQVNGVLIPGGGASF--YADD-GYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL  192 (350)
Q Consensus       116 ~~~dgvIipG~g~~~--~~~~-~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i  192 (350)
                      +++||+|++|+....  .+.. .|.+. ..+++++.+..     +|+||||+|+|+++.++||.+. ........+..+.
T Consensus        82 ~~fDglIITGap~~~~~fedv~y~~eL-~eii~~a~~~~-----~~~lgiCwGaQa~~~~lgGi~k-~~~~~k~~Gv~~~  154 (281)
T d2ghra1          82 EKFDGLIITGAPVETLSFEEVDYWEEL-KRIMEYSKTNV-----TSTLHICWGAQAGLYHHYGVQK-YPLKEKMFGVFEH  154 (281)
T ss_dssp             CCEEEEEECCCSCTTSCGGGSTTHHHH-HHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEE
T ss_pred             ccCCEEEEeCCCCCcccccccccHHHH-HHHHHHHHhcC-----CCeEEEcHHHHHHHHHhCCCcc-ccCCCceEEEEEE
Confidence            679999999988665  2233 34432 24555555543     9999999999999999999754 2222222222332


Q ss_pred             eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047        193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ  272 (350)
Q Consensus       193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ  272 (350)
                      ..  ....++|+.++++.+        .+.+.|...+..+..   ..++++.++|.| ++.+   +.++...+.+++++|
T Consensus       155 ~~--~~~~~pL~~g~~d~f--------~~p~Sr~~~~~~d~v---~~~p~l~vLa~S-~~~g---~~~~~~~~~~~~~iQ  217 (281)
T d2ghra1         155 EV--REQHVKLLQGFDELF--------FAPHSRHTEVRESDI---REVKELTLLANS-EEAG---VHLVIGQEGRQVFAL  217 (281)
T ss_dssp             EE--CCSSCGGGTTCCSEE--------EEEEEEEEECCHHHH---HTCTTEEEEEEE-TTTE---EEEEEEGGGTEEEEC
T ss_pred             ee--ccCCChhccCCcchh--------heeeeecccCCHHHH---hhCCCceEEeec-CCcc---cEEEEECCCCEEEEe
Confidence            22  224578888887754        355555433431111   456788888887 6665   556666666899999


Q ss_pred             ccCCcCC
Q psy14047        273 FHPEKNA  279 (350)
Q Consensus       273 fHPE~~~  279 (350)
                      +|||...
T Consensus       218 gHPEYd~  224 (281)
T d2ghra1         218 GHSEYSC  224 (281)
T ss_dssp             SCTTCCT
T ss_pred             CCCCcch
Confidence            9999764

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.30  E-value=1.5e-11  Score=109.64  Aligned_cols=57  Identities=18%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             CCCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHH--HHhhcccceEEcCCCC
Q psy14047          3 ATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYY--RKILGQVNGVLIPGGG   74 (350)
Q Consensus         3 ~~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~--~~~l~~~dGli~~GG~   74 (350)
                      ...||.|+|+.-|...            ....-..+++.+|+.+..+....   .+  +..|+.++||+||||-
T Consensus         3 ~~~kpkvaVl~~pGtN------------cd~e~~~Af~~aG~~~~~v~~~d---l~~~~~~L~~~~~lvipGGF   61 (262)
T d1t3ta2           3 TGARPKVAVLREQGVN------------SHVEMAAAFHRAGFDAIDVHMSD---LLGGRIGLGNFHALVACGGF   61 (262)
T ss_dssp             TTCCCEEEEEECTTBC------------CHHHHHHHHHHTTCEEEEEEHHH---HHHTSCCGGGCSEEEECCBC
T ss_pred             CCCCCeEEEEeCCCCC------------cHHHHHHHHHHcCCceEEEEeee---cccCcccccccceEEEeccc
Confidence            3678999999988641            12556679999999999997631   11  1136777888888875

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=97.32  E-value=0.00015  Score=58.33  Aligned_cols=49  Identities=16%  Similarity=0.052  Sum_probs=37.4

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..||+||+|||...     .+... ..++++++++.+.+  +||-+||-|.++|+.+
T Consensus        63 ~~yDaliiPGG~~~-----~l~~~-~~~~~~i~e~~~~~--K~I~aic~g~~~La~a  111 (156)
T d1p80a1          63 LTVDAVIVPCGNIA-----DIADN-GDANYYLMEAYKHL--KPIALAGDARKFKATI  111 (156)
T ss_dssp             GGCSEEEECCSCTH-----HHHTC-HHHHHHHHHHHHTT--CCEEEEGGGGGGGGTT
T ss_pred             ccCCEEEeeCCchH-----HHhcc-hHHHHHHHHHHHcC--CeEEEECchHHHHHHc
Confidence            46899999997542     22211 14678999998887  9999999999999765

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=97.21  E-value=0.00037  Score=57.22  Aligned_cols=51  Identities=18%  Similarity=0.172  Sum_probs=38.2

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+|++++||+.....   .+.. ...+.++++++.+++  +||.+||.|.++|+.+
T Consensus        63 ~~~dalivpgg~~~~~---~~~~-~~~~~~~l~~~~~~~--k~i~aic~G~~~La~a  113 (184)
T d1sy7a1          63 TMVDAIFIPGGAKAAE---TLSK-NGRALHWIREAFGHL--KAIGATGEAVDLVAKA  113 (184)
T ss_dssp             GGSSEEEECCCHHHHH---HHHT-CHHHHHHHHHHHHTT--CEEEEETTHHHHHHHH
T ss_pred             ccceEEEEeecccccc---cccc-ccchhHHHHHHHhcC--CceEEechHHHHHHHc
Confidence            4689999998753221   1111 124788999999888  9999999999999986

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00022  Score=59.01  Aligned_cols=51  Identities=29%  Similarity=0.457  Sum_probs=38.5

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      +.||+|++|||...   ...+.. ...+.++++++.++|  +||.+||.|..+|+.+
T Consensus        63 ~~~D~liipGG~~~---~~~l~~-~~~l~~~lr~~~~~~--k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          63 GPYDVVVLPGGNLG---AQNLSE-SAAVKEILKEQENRK--GLIAAICAGPTALLAH  113 (186)
T ss_dssp             CCCSEEEECCCHHH---HHHHHH-CHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred             ccccEEEEecCccc---cccccc-hHHHHHHHHHhhccc--cceeecccCcchhhhc
Confidence            57999999997432   112221 124788999999888  9999999999999975

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00035  Score=59.43  Aligned_cols=58  Identities=14%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHH------HHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKA------GAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN  174 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~------~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G  174 (350)
                      .++||+||+|||.........+...      ...+.++++++.++|  +||-+||.|-++|+.+.+
T Consensus        83 ~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~g--k~iaaIC~gp~~l~~~~~  146 (217)
T d1vhqa_          83 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAG--KPLGFMCIAPAMLPKIFD  146 (217)
T ss_dssp             GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTT--CCEEEETTGGGGHHHHCS
T ss_pred             HhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcC--CCEEEEChhHHHHHHHhc
Confidence            4689999999987653322222100      013678889999888  999999999999998743

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0017  Score=53.94  Aligned_cols=52  Identities=17%  Similarity=0.417  Sum_probs=37.2

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH-HHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG-FQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G-~QlLa~a  172 (350)
                      ..++|+||+||+...   ...+.. ...+.++++++.++|  +||.+||.| ..+|+.+
T Consensus        63 ~~d~D~liiPGG~~~---~~~l~~-~~~l~~~lr~~~~~g--k~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          63 DGEYDVIVLPGGIKG---AECFRD-STLLVETVKQFHRSG--RIVAAICAAPATVLVPH  115 (195)
T ss_dssp             TSCCSEEEECCCHHH---HHHHHH-CHHHHHHHHHHHHTT--CEEEEETHHHHHHTTTT
T ss_pred             cccceEEEEccccCc---cccccc-cHHHHHHHHHHhhcc--ceeeeeeccchhhhhhc
Confidence            467999999997321   112211 125788999999888  999999999 5777654

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00097  Score=54.17  Aligned_cols=51  Identities=24%  Similarity=0.464  Sum_probs=38.5

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..+||+||+|||....    .+.. ...+.++++++.+++  +||.+||.|-.+|+.+
T Consensus        62 ~~~yDalivpGG~~~~----~l~~-~~~~~~~i~~~~~~~--k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          62 PAEFDALLLPGGHSPD----YLRG-DNRFVTFTRDFVNSG--KPVFAICHGPQLLISA  112 (170)
T ss_dssp             GGGCSEEEECCBTHHH----HHTT-SHHHHHHHHHHHHTT--CCEEEETTTHHHHHHH
T ss_pred             hhhceEEEEccchhhh----hhcc-ChHHHHHHHHHhhcC--CeeeecccchHHHhhh
Confidence            4579999999984321    1110 124788899988887  9999999999999875

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.33  E-value=0.0012  Score=53.33  Aligned_cols=50  Identities=24%  Similarity=0.426  Sum_probs=38.1

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .++|+||+||+.....    ... ...+.++++++.+++  +||.+||.|..+|+.+
T Consensus        60 ~~~d~viipGg~~~~~----~~~-~~~~~~~l~~~~~~~--k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          60 EEFDALVLPGGRAPER----VRL-NEKAVSIARKMFSEG--KPVASICHGPQILISA  109 (166)
T ss_dssp             GGCSEEEECCBSHHHH----HTT-CHHHHHHHHHHHHTT--CCEEEETTTTHHHHHH
T ss_pred             ccccEEEEecccchhh----hcc-ChHHHHHHHHHHhcC--Ceeeeccccchhhhhc
Confidence            5699999999854221    110 014778899998888  9999999999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.00  E-value=0.0013  Score=54.48  Aligned_cols=50  Identities=24%  Similarity=0.293  Sum_probs=37.2

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..++|.||+|||.......+      ..+.++++++.+++  ++|.|||-|-.+|+.+
T Consensus        61 ~~~~D~liipGG~~~~~~~~------~~l~~~lr~~~~~~--~~i~aiC~g~~~La~a  110 (188)
T d2fexa1          61 PVDIDALVIPGGLSWEKGTA------ADLGGLVKRFRDRD--RLVAGICAAASALGGT  110 (188)
T ss_dssp             TTTCSEEEECCBSHHHHTCC------CCCHHHHHHHHHTT--CEEEEETHHHHHHHHT
T ss_pred             hhhccEEEecCCcccccccc------HHHHHHHHHHHHhC--CEEEEecchhHHHHHc
Confidence            45799999999754321111      13678888888887  9999999999999864

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.86  E-value=0.0015  Score=55.41  Aligned_cols=53  Identities=17%  Similarity=0.340  Sum_probs=38.6

Q ss_pred             HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      ..++||+|++|||.....+...-.    .+.++++++.+++  +||.+||.|-++|..+
T Consensus        83 ~~~dYd~v~iPGG~g~~~~l~~~~----~l~~li~~~~~~~--k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_          83 DAHGFDAIFLPGGHGTMFDFPDNE----TLQYVLQQFAEDG--RIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             GGSSCSEEEECCCTTHHHHSTTCH----HHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             CHhHCCEEEeCCCCchhhcchhhH----HHHHHHHHHHhcc--Ccceeecccceeeecc
Confidence            457899999999876432211111    3667788888887  9999999998888754

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.71  E-value=0.0064  Score=51.96  Aligned_cols=52  Identities=19%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047        115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT  172 (350)
Q Consensus       115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a  172 (350)
                      .++||+|++|||.....   .+... ..+.++++++.++|  +||-.||.|-.+|..+
T Consensus        95 ~~~ydav~ipGG~g~~~---dl~~~-~~l~~li~~~~~~g--k~vaAIChGp~~L~~~  146 (236)
T d1qvwa_          95 ADDYQIFMASAGHGTLF---DYPKA-KDLQDIASEIYANG--GVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             GGGCSEEEECCSTTHHH---HGGGC-HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             HhHCCEEEEeCCccchh---cchhh-hHHHHHHHHHHhcC--CeEEEehhhHHHHHHH
Confidence            46899999999866422   22111 13667788888888  9999999998877644

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.016  Score=50.60  Aligned_cols=54  Identities=13%  Similarity=0.209  Sum_probs=38.0

Q ss_pred             ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcC
Q psy14047        116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNN  175 (350)
Q Consensus       116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg  175 (350)
                      .+||+|++|||.....+...-.    .+.++++.+.++|  +||..||.|-..|..+..|
T Consensus       140 ~dYdav~iPGGhG~~~dL~~~~----~l~~ll~~~~~~g--k~vaaICHGPa~Ll~a~~g  193 (279)
T d1n57a_         140 SEYAAIFVPGGHGALIGLPESQ----DVAAALQWAIKND--RFVISLCHGPAAFLALRHG  193 (279)
T ss_dssp             CSEEEEEECCSGGGGSSGGGCH----HHHHHHHHHHHTT--CEEEEETTGGGGGGGGTTS
T ss_pred             ccccEEEecCCccchhhhhHHH----HHHHHHHHHHHcC--CcceeccccchhhhhcccC
Confidence            4799999999876432221111    3566777777787  9999999998887655443

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.67  E-value=0.55  Score=39.05  Aligned_cols=55  Identities=9%  Similarity=0.017  Sum_probs=38.0

Q ss_pred             HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHH
Q psy14047        111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL  170 (350)
Q Consensus       111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa  170 (350)
                      ..+.++++|+|++.||.... -...|..+  .+.+.++++.++|  .++.|+-.|.-++.
T Consensus        73 ~~~~l~~ad~I~v~GGn~~~-l~~~l~~t--~l~~~l~~~~~~G--~vi~G~SAGA~v~~  127 (229)
T d1fyea_          73 PLAAIEKAEIIIVGGGNTFQ-LLKESRER--GLLAPMADRVKRG--ALYIGWSAGANLAC  127 (229)
T ss_dssp             HHHHHHHCSEEEECCSCHHH-HHHHHHHT--TCHHHHHHHHHTT--CEEEEETHHHHHTS
T ss_pred             HHHHHhhCCEEEEcCCCHHH-HHHHHHhC--CHHHHHHHHHHcC--CeEEEeChhHhhcC
Confidence            34567788888887764322 13344433  3677888888888  99999999976654

>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Pyrococcus horikoshii, PH1647 [TaxId: 53953]

Probab=86.99  E-value=0.59  Score=35.94  Aligned_cols=76  Identities=20%  Similarity=0.107  Sum_probs=39.9

Q ss_pred             CCEEEEEccCCCCC---CCCC-CCCc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHH----HHHhhcccceEEcCCCCc
Q psy14047          6 RPIIGILTQEPCLG---VDKH-FADF-KSYIPASYVKAVEASGARVAPIFIGN-PEAY----YRKILGQVNGVLIPGGGA   75 (350)
Q Consensus         6 ~p~Igi~~~~~~~~---~~~~-~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~----~~~~l~~~dGli~~GG~~   75 (350)
                      ||.|||.+.-.+.-   .... ..+. ++--......++++.|+.++...... +.+.    +++.++..|-|+.+||. 
T Consensus         2 kPrV~iistG~Elv~~~~~~~~~~g~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~DlvIttGG~-   80 (144)
T d1wu2a3           2 KPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGS-   80 (144)
T ss_dssp             CCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred             CCEEEEEcCChhhcCCCCcCCCCCCcEeecCchHHhhhhcccCcceeEEEEecchHHHHHHHHHHhhhcccEEEEcccc-
Confidence            79999998543320   0000 0111 23333445677888999998775543 3343    34456788999999997 


Q ss_pred             ccccCCc
Q psy14047         76 SFYADDG   82 (350)
Q Consensus        76 dv~~~~~   82 (350)
                      .+..+|+
T Consensus        81 s~g~~D~   87 (144)
T d1wu2a3          81 AFGDKDY   87 (144)
T ss_dssp             -----CC
T ss_pred             ccCcchh
Confidence            4444433

>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]

Probab=85.92  E-value=0.93  Score=34.85  Aligned_cols=71  Identities=13%  Similarity=0.124  Sum_probs=41.0

Q ss_pred             CEEEEEccCCCCCC-CCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecC-CCHHHH----HHhhcccceEEcCCCCcccc
Q psy14047          7 PIIGILTQEPCLGV-DKHF-ADF-KSYIPASYVKAVEASGARVAPIFIG-NPEAYY----RKILGQVNGVLIPGGGASFY   78 (350)
Q Consensus         7 p~Igi~~~~~~~~~-~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~-~~~~~~----~~~l~~~dGli~~GG~~dv~   78 (350)
                      |.|||.+.-.+.-. .... .+. ++--......++++.|+.++..... .+.+.+    ++.++..|-||.+||. .+.
T Consensus         1 Prv~iistG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DliIttGG~-s~g   79 (148)
T d1uz5a3           1 PKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGA-SGG   79 (148)
T ss_dssp             CEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC----
T ss_pred             CEEEEEeCChhhcCCCCcCCCCCEeeCChHHHHHhhhcccccceeeeeeccHHHHHHHHHHhhhccccEEEECCCc-ccc
Confidence            78899875433200 1111 122 3334444567888999998765554 344444    3455678999999998 454

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.09  E-value=1.3  Score=34.25  Aligned_cols=69  Identities=9%  Similarity=0.182  Sum_probs=40.7

Q ss_pred             CEEEEEccCCCCCC-CCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHHH----HHhhcccceEEcCCCCc
Q psy14047          7 PIIGILTQEPCLGV-DKHF-ADF-KSYIPASYVKAVEASGARVAPIFIGN-PEAYY----RKILGQVNGVLIPGGGA   75 (350)
Q Consensus         7 p~Igi~~~~~~~~~-~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~----~~~l~~~dGli~~GG~~   75 (350)
                      |.|||.+.-.+.-. .... .+. ...-......++++.|+.++...... +.+.+    .+.+++.|-|+.+||..
T Consensus         1 PrV~iistG~El~~~~~~~~~g~i~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliittGG~s   77 (155)
T d2ftsa3           1 PVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS   77 (155)
T ss_dssp             CCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred             CEEEEEeCChhccCCCCcCCCCcEeechHHHHHHHhcccccceEEEEEecCchhHHHHHHHHhhcccCEEEEecccc
Confidence            78888875433200 1111 112 33333445678888999987665543 34444    34457899999999973

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=80.03  E-value=0.79  Score=36.14  Aligned_cols=36  Identities=31%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047         33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA   75 (350)
Q Consensus        33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~   75 (350)
                      .+..++|++.|+.+.+++...       .++..|++++|||+.
T Consensus        14 ~si~~~l~~lg~~~~i~~~~~-------~i~~~d~lIlpG~g~   49 (195)
T d1ka9h_          14 RSAAKALEAAGFSVAVAQDPK-------AHEEADLLVLPGQGH   49 (195)
T ss_dssp             HHHHHHHHHTTCEEEEESSTT-------SCSSCSEEEECCCSC
T ss_pred             HHHHHHHHHCCCeEEEECCHH-------HHHHHhhhhcCCCcc
Confidence            568899999999998875432       267899999999883