Psyllid ID: psy14063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
Protein Sequence
MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKSPK
Secondary Structure (PSIPRED)
cHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEcccHHHHHHHHHHcccccEEEccccEEcccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccEcccccHccHHHHHHHHHHHHccHHHHEEEccHHHHHHHHHHHHHHcccccHEHHHHHHHHHHHHHHcccccccccccHHHccccccHHHHHHHHHHccccEEEccHHHHHHHHHcccccEEEEEccEEEEcccccccccccccccccccccccccEcccHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mevlygkydeerTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEkkgkesnvigskfrwsvfsaktrfecDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKREsmqtsrsnNRLIDFVMQLKSENRVSGILgrlgdlggidqkyDIAVSTACGALNYIVTETVEAGEAVIAAVKRqnvgrvnvipldkmqqyhsqcydkyrtpenvprLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAkrigysgggyrmvtlegaiiepsetLVAQDLNQAKrigysgggyrmvtlegaiiepsetLVAQDLNQAKrigysgggyrmvtlegaiiepsgtmsgggsnpirglmgrkatvstdtslVKDLEVKEKRLASLETELRILSQQKMEVETQLNctgnelkykkqeydtclidvkspk
Flexible Loop (DISEMBL)
mevlygkydeertekltrvqlvetdLKALEPELRKAvnflelencvqrKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSelktvekkgkesnvigskfrwsvfsaKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVqttlterktlceelttrvpameseiAESRARLADLTREEAKLLDQVEKLARevsekresmqtsrsnnrlIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAiiepsgtmsgGGSNPIRGLMGrkatvstdtslvkdlevKEKRLASLETELRilsqqkmevetqlnctgnelkykkqeydtclidvkspk
Low Complexity Region (SEG)
MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSgilgrlgdlggidQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKSPK
Disordered region (IsUnstruct)
***************LTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNL**********************************************VIGSKFRWSVFSAKTRFECDIAKSELEIFLS****************************LC*********************************************************LIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAII***********************************************LRIL******VETQLNCTGNELKYKKQEYDTCLID*****
Disordered Region (DISOPRED)
*E*LYGK**************************************************************************************************************************************************************************************************************************************KSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKM***************NVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETL**********************************************************************************************************************************************I*V****
Disordered Region (DISEMBL)
MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCT********************NVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAR*************SNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLIDVKSPK
Disordered Region (DISPRO)
MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPS******************GGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGT*********************DTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLID*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESxxxxxxxxxxxxxxxxxxxxxGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxCEELTTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNCTGNELKYKKQEYDTCLIDVKSPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	531	2.2.26 [Sep-21-2011]
P50532	1290	Structural maintenance of	N/A	N/A	0.482	0.198	0.406	9e-55
Q8CG47	1286	Structural maintenance of	yes	N/A	0.551	0.227	0.388	2e-54
Q9ERA5	1243	Structural maintenance of	N/A	N/A	0.536	0.229	0.406	2e-54
Q9NTJ3	1288	Structural maintenance of	yes	N/A	0.536	0.221	0.406	3e-51
Q9FJL0	1241	Structural maintenance of	yes	N/A	0.480	0.205	0.366	4e-42
Q54LV0	1415	Structural maintenance of	yes	N/A	0.506	0.190	0.319	1e-34
P41004	1324	Structural maintenance of	yes	N/A	0.322	0.129	0.390	2e-34
Q12267	1418	Structural maintenance of	yes	N/A	0.596	0.223	0.290	2e-33
Q20060	1549	Structural maintenance of	yes	N/A	0.574	0.196	0.293	2e-20
Q9HK21	1140	Chromosome partition prot	yes	N/A	0.491	0.228	0.273	8e-14

>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis GN=smc4 PE=1 SV=1

 Score =  215 bits (547), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 170/258 (65%), Gaps = 2/258 (0%)

Query: 126 TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185
            R + D+A+SEL+I+LS  +    +L   +  L     TL ER+   +EL T++P  E +
Sbjct: 489 ARSKMDVAQSELDIYLSRHNSALSQLNKAKEALNTASATLKERRAAIKELETKLPKDEGD 548

Query: 186 IAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSG 245
           + +    L  L  EE  + +QV +L ++V E R S+  +RS  +++D ++Q K   ++ G
Sbjct: 549 LKKREKELESLVSEEGNIKNQVRELRQKVEEARSSLSANRSRGKVLDALIQQKKSGKIPG 608

Query: 246 ILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKM 305
           I GRLGDLG ID+KYD+A+S++CGAL++IV +T++  +  +  +K+QNVG    I LDKM
Sbjct: 609 IFGRLGDLGAIDEKYDVAISSSCGALDHIVVDTIDTAQECVNFLKKQNVGVATFIGLDKM 668

Query: 306 QQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG 365
           + +  +  +K +TPEN+PRL D+++V+DE+I+ AFYFA R+T+VA +L+QA R+ +    
Sbjct: 669 KVW-EKGLNKIQTPENIPRLFDMVKVKDEQIKPAFYFALRDTIVANNLDQATRVAFQKDK 727

Query: 366 -YRMVTLEGAIIEPSETL 382
            +R+VTL+G IIE S T+
Sbjct: 728 RWRVVTLQGQIIEQSGTM 745

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerase.
Xenopus laevis (taxid: 8355)

>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus GN=Smc4 PE=1 SV=1

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 192/314 (61%), Gaps = 21/314 (6%)

Query: 93  MESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKK 150
           M+S K E + +  EK+ +E  ++G  F  SV  A+++ E  +A+SEL+I+LS  +    +
Sbjct: 462 MDSLKQETQGLQKEKEIQEKELMG--FNKSVNEARSKME--VAQSELDIYLSRHNTAVSQ 517

Query: 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210
           L+  +  L     TL ERK   +++ T++P  + E+ E    L  LT+EE  L   V  L
Sbjct: 518 LSKAKEALITASETLKERKAAIKDINTKLPQTQQELKEKEKELQKLTQEEINLKSLVHDL 577

Query: 211 AREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA 270
            ++V E + S+  +RS  +++D ++Q K   R+ GI GRLGDLG ID+KYDIA+S+ C A
Sbjct: 578 FQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHA 637

Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
           L+YIV ++++  +  +  +K+ N+G    I LDKM  + ++   K +TPEN PRL DL++
Sbjct: 638 LDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVW-AKKMSKIQTPENTPRLFDLVK 696

Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSETLVAQDLNQ 389
           V++E+IR AFYFA R+TLVA +L+QA R+ Y     +R+VTL+G IIE S T+       
Sbjct: 697 VKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTM------- 749

Query: 390 AKRIGYSGGGYRMV 403
                 SGGG +++
Sbjct: 750 ------SGGGSKVM 757

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Mus musculus (taxid: 10090)

>sp|Q9ERA5|SMC4_MICAR Structural maintenance of chromosomes protein 4 (Fragment) OS=Microtus arvalis GN=SMC4 PE=2 SV=1

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/293 (40%), Positives = 183/293 (62%), Gaps = 8/293 (2%)

Query: 93  MESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKK 150
           M+S K E + +  EK+ +E  ++G  F  SV  A+++ E  +A+SEL+I+LS  +    +
Sbjct: 419 MDSLKQETQGLQKEKEDQEKELMG--FNKSVNEARSKME--VAQSELDIYLSRHNTAVSQ 474

Query: 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210
           L+  +  L     TL ERK    E+ T++P  + E+ E    L  LT+EE  L   V  L
Sbjct: 475 LSKAKETLITASETLKERKAAIGEINTKLPQTQQELKEKEKELQKLTQEEINLKSLVHDL 534

Query: 211 AREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA 270
            ++V E + S+  +RS  +++D ++Q K   R+ GI GRLGDLG ID+KYDIA+S+ C A
Sbjct: 535 FQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHA 594

Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
           L+YIV ++++  +  +  +KR N+G    I LDKM  + ++   K +TPEN PRL DL++
Sbjct: 595 LDYIVVDSIDTAQECVNFLKRHNIGVATFIGLDKMTVW-AKKMAKIQTPENTPRLFDLVK 653

Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSETL 382
            ++E+IR AFYFA R+TLVA +L+QA R+ Y     +R+VTL+G IIE S T+
Sbjct: 654 AKNEEIRQAFYFALRDTLVADNLDQATRVAYQKDRRWRVVTLQGQIIEQSGTM 706

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Microtus arvalis (taxid: 47230)

>sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens GN=SMC4 PE=1 SV=2

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/293 (40%), Positives = 181/293 (61%), Gaps = 8/293 (2%)

Query: 93  MESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKK 150
           M+S K E + +  EK+ +E  ++G  F  SV  A+++   D+A+SEL+I+LS  +    +
Sbjct: 464 MDSLKQETQGLQKEKESREKELMG--FSKSVNEARSKM--DVAQSELDIYLSRHNTAVSQ 519

Query: 151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL 210
           L   +  L     TL ERK    ++  ++P  E E+ E    L  LT+EE      V  L
Sbjct: 520 LTKAKEALIAASETLKERKAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDL 579

Query: 211 AREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA 270
            ++V E + S+  +RS  +++D ++Q K   R+ GI GRLGDLG ID+KYD+A+S+ C A
Sbjct: 580 FQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDVAISSCCHA 639

Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
           L+YIV ++++  +  +  +KRQN+G    I LDKM  +  +  +  +TPEN PRL DL++
Sbjct: 640 LDYIVVDSIDIAQECVNFLKRQNIGVATFIGLDKMAVWAKKMTE-IQTPENTPRLFDLVK 698

Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSETL 382
           V+DEKIR AFYFA R+TLVA +L+QA R+ Y     +R+VTL+G IIE S T+
Sbjct: 699 VKDEKIRQAFYFALRDTLVADNLDQATRVAYQKDRRWRVVTLQGQIIEQSGTM 751

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Homo sapiens (taxid: 9606)

>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 PE=2 SV=1

 Score =  173 bits (438), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 151/259 (58%), Gaps = 4/259 (1%)

Query: 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
           R + D+A SE E+         K   D +  L  + T   E+          +   + E 
Sbjct: 438 RGKLDVASSESELLSKKHEAALKAFTDAQKQLSDISTRKKEKAAATTSWKADIKKKKQEA 497

Query: 187 AESRARLADLTREEAKLLDQVEKLARE-VSEKRESMQTSRSNNRLIDFVMQLKSENRVSG 245
            E+R    +  +E+  L+ Q E+ ARE V+E + +M + +S N ++  V++ K  N++ G
Sbjct: 498 IEARKVEEESLKEQETLVPQ-EQAAREKVAELKSAMNSEKSQNEVLKAVLRAKENNQIEG 556

Query: 246 ILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKM 305
           I GR+GDLG ID KYD+A+STAC  L+YIV ET  + +A +  +++ N+G    + L+K 
Sbjct: 557 IYGRMGDLGAIDAKYDVAISTACAGLDYIVVETTSSAQACVELLRKGNLGFATFMILEKQ 616

Query: 306 QQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG- 364
             +  +  +K +TPE+VPRL DL++V+DE+++LAFY A   T+VA+DL+QA RI Y G  
Sbjct: 617 TDHIHKLKEKVKTPEDVPRLFDLVRVKDERMKLAFYAALGNTVVAKDLDQATRIAYGGNR 676

Query: 365 -GYRMVTLEGAIIEPSETL 382
              R+V L+GA+ E S T+
Sbjct: 677 EFRRVVALDGALFEKSGTM 695

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Also involved in chromosome segregation in meiosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium discoideum GN=smc4 PE=3 SV=1

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 153/285 (53%), Gaps = 16/285 (5%)

Query: 119 WSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTR 178
           WS   ++ +   D+  SEL +     +  T+ L D    LE  +T  + RK    +    
Sbjct: 570 WSKKHSEAKAVVDLKTSELAVLSKDFNGATQNLDDAIKALEDAKTISSTRKNNITKSKKE 629

Query: 179 VPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLK 238
           + ++++ I +   RLA     E  L        R++ + + ++  + S N ++D ++++K
Sbjct: 630 LESVKAIIVDLEKRLASGKVTEENLYRNTMDAKRQLEQIKTNLSENSSRNTILDRLLKIK 689

Query: 239 SENRVSGILGRLGDLGGIDQKYDIAVSTAC-GALNYIVTETVEAGEAVIAAVKRQNVGRV 297
              ++SGI GRLGDLG IDQKYD+A+STA    ++ I+ ET  A EA +  ++++N+GR 
Sbjct: 690 ESGQISGIHGRLGDLGAIDQKYDVAISTAAFSQMDNIIVETTAAAEACVELLRKENLGRA 749

Query: 298 NVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDE-KIRLAFYFATRETLVAQDLNQA 356
             + L+ + +Y  Q     +TP N PRL DLI+++DE K   AF+ A   TLVA  L++A
Sbjct: 750 TFMILENL-EYQRQNLGPVQTPNNTPRLFDLIKMKDEKKYATAFFTAVGHTLVADTLDEA 808

Query: 357 KRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYR 401
            +I Y    +R+VTL+G++I+ S  +             SGGG +
Sbjct: 809 TKIAYGAKRHRVVTLDGSLIDTSGAM-------------SGGGLK 840

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Dictyostelium discoideum (taxid: 44689)

>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut3 PE=1 SV=2

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 16/187 (8%)

Query: 216 EKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIV 275
           E + S+ +SRS   +++ + +L   + ++G  GRLGDL  ID+ YD+A+STAC ALN+IV
Sbjct: 623 EMKASLSSSRSRGNVLESLQRLHESDNLNGFFGRLGDLATIDEAYDVAISTACPALNHIV 682

Query: 276 TETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEK 335
            + +E G+  +A ++  N+GR + I L ++ Q +     + +TPENVPRL DL++  D+K
Sbjct: 683 VDNIETGQKCVAFLRSNNLGRASFIILKELAQKN---LARIQTPENVPRLFDLLRFNDQK 739

Query: 336 IRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGY 395
              AFY   + TLVA++L QA RI Y    +R+VTL G +I+ S T+             
Sbjct: 740 FAPAFYNVLQNTLVAKNLEQANRIAYGKTRWRVVTLSGQLIDKSGTM------------- 786

Query: 396 SGGGYRM 402
           +GGG R+
Sbjct: 787 TGGGTRV 793

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1 SV=1

 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 180/348 (51%), Gaps = 31/348 (8%)

Query: 64  NLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEK--KGKESNVIGSKFR--- 118
           ++ E E  ++++  + T +   IK  T  +E  +S L  ++   K K  N+     R   
Sbjct: 497 SISEAENMLEELRGQQTEHETEIKDLTQLLEKERSILDDIKLSLKDKTKNISAEIIRHEK 556

Query: 119 ----WSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEE 174
               W +   +   +  +A+SEL +   TQ+K  K +  LE  +   +T   E + L  +
Sbjct: 557 ELEPWDLQLQEKESQIQLAESELSLLEETQAKLKKNVETLEEKILAKKTHKQELQDLILD 616

Query: 175 LTTRVPAMESEIAESRARLADLT---REEAKLLDQVEKLAREVSEKRESMQTSRSNNRLI 231
           L  ++ +++ E ++            +E  K+L+   + A E    R S+  +++ ++++
Sbjct: 617 LKKKLNSLKDERSQGEKNFTSAHLKLKEMQKVLNAHRQRAMEA---RSSLSKAQNKSKVL 673

Query: 232 DFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKR 291
             + +L+   R++G  GRLGDLG ID  +D+A+STAC  L+ +V +TVE  +  I  +++
Sbjct: 674 TALSRLQKSGRINGFHGRLGDLGVIDDSFDVAISTACPRLDDVVVDTVECAQHCIDYLRK 733

Query: 292 QNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQ 351
             +G    I LD+++Q++ Q      TPENVPRL DL++ ++ K   AFY   R+TLVAQ
Sbjct: 734 NKLGYARFILLDRLRQFNLQPIS---TPENVPRLFDLVKPKNPKFSNAFYSVLRDTLVAQ 790

Query: 352 DLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGG 399
           +L QA  + Y    +R+VT++G +I+ S T+             SGGG
Sbjct: 791 NLKQANNVAYGKKRFRVVTVDGKLIDISGTM-------------SGGG 825

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis elegans GN=smc-4 PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 160/351 (45%), Gaps = 46/351 (13%)

Query: 73  QQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSA---KTRFE 129
           Q +E E TAN E+ K   DE E      K  +KK +E+        W+  S    K R E
Sbjct: 454 QLLEIEKTANEEADKNL-DEFEKRSEAPKEEQKKIQET--------WAQKSNEFNKVRGE 504

Query: 130 CDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAES 189
             IA+ + E      +  T KL +L+  LE  + +  + K   +EL    P  +S     
Sbjct: 505 ARIAREDFEDLKKLANSGTDKLIELKKRLESSEESYAKEK---DELDKLKPEFDS----W 557

Query: 190 RARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNN-------RLIDFVMQLKSENR 242
             +L  L+ E   L +   +  +++++ R+ ++T R  N       ++I  +M+ K   R
Sbjct: 558 NDKLKQLSTELPTLRNTARQKNQDLAKTRDRLETLRQQNSSCSSSNKVIQALMKEKEAGR 617

Query: 243 VSGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIP 301
           +    GRLGDLG ID KY+ A+ T  GA LNY++    E  + VI  +    + R  V P
Sbjct: 618 IKSFHGRLGDLGVIDPKYEGAICTNFGARLNYLIVGKEEDAKNVINFLVANKLPRQTVQP 677

Query: 302 LDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGY 361
           LDK++            P   PRLIDLI   D  ++ AFY   R  +V     +A+R+  
Sbjct: 678 LDKIKCDKRDLAPNPTNPLPAPRLIDLIDC-DPVLKPAFYDMVRSAIVGDSTQEAQRMHR 736

Query: 362 SGG--GYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAII 410
                G  + TLEG++I PS +             ++GGG    T++G I+
Sbjct: 737 MPACRGVTVCTLEGSMIHPSGS-------------FTGGGK---TVKGLIL 771

Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Also involved in chromosome segregation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=smc PE=3 SV=1

 Score = 79.0 bits (193), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 143/289 (49%), Gaps = 28/289 (9%)

Query: 152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLA-------DLTREEAKLL 204
           ADL   L+K +  L ERK   E+L  ++   E +  E+   +        DL  +  ++ 
Sbjct: 408 ADLAVLLQK-KAALEERK---EDLDLKIRTSEWKAKETSEDMGKYSRKYYDLKAKYDQIN 463

Query: 205 DQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKS-ENRVSGILGRLGDLGGIDQKYDIA 263
           D++  L  E+SEK  S + + S  R+ ++V  +K  E  V G++G + DL    +KY  A
Sbjct: 464 DRISDLKSEISEKEASAKIASS--RVPEYVRNVKMLEESVEGVIGLVRDLISYGEKYVKA 521

Query: 264 VSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQ--CYDKYRTPE 320
           V +A G  LN +V +     +  I  +K + +  +  +PL+KM+   +Q       + P 
Sbjct: 522 VESAGGGRLNAVVVKDDAVAKECIQILKDRKISPMTFLPLNKMRDPPAQRDVGKISKDPG 581

Query: 321 NVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSE 380
            +  L+D +  +D+  R A Y+A R+T++ QD++  +R+    G +R+VTL+G I +P  
Sbjct: 582 YLGILMDFVDFEDQ-YRSAVYYAIRDTILVQDIDAGRRL---MGIFRLVTLDGDIFDPGG 637

Query: 381 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETL-----VAQDLNQA 424
           ++     N A    Y+        LEG  I+ S  +     + ++++QA
Sbjct: 638 SITGGYRNYAS--DYASALRMQHDLEGMKIQLSSLMDDRSRIKREMDQA 684

Required for chromosome condensation and partitioning.

Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) (taxid: 273075)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
195443119	1329	GK21116 [Drosophila willistoni] gi|19416	0.612	0.244	0.408	3e-63
195386590	1390	GJ24094 [Drosophila virilis] gi|19414844	0.606	0.231	0.426	2e-61
195114514	1396	GI14952 [Drosophila mojavensis] gi|19391	0.495	0.188	0.451	4e-61
28317138	1012	LD20207p, partial [Drosophila melanogast	0.493	0.258	0.44	1e-59
6469332	1409	XCAP-C/SMC4 homolog Gluon [Drosophila me	0.493	0.185	0.44	1e-59
24584683	1409	gluon [Drosophila melanogaster] gi|60146	0.493	0.185	0.44	2e-59
307207352	1378	Structural maintenance of chromosomes pr	0.504	0.194	0.434	4e-59
195579640	1136	GD21899 [Drosophila simulans] gi|1941916	0.557	0.260	0.420	1e-58
148683552	981	structural maintenance of chromosomes 4	0.713	0.386	0.345	1e-58
405961148	1257	Structural maintenance of chromosomes pr	0.625	0.264	0.378	2e-58

>gi|195443119|ref|XP_002069286.1| GK21116 [Drosophila willistoni] gi|194165371|gb|EDW80272.1| GK21116 [Drosophila willistoni]

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 140/343 (40%), Positives = 212/343 (61%), Gaps = 18/343 (5%)

Query: 61  NMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWS 120
           N K + E   K++++E+E     E ++K  DE+++ KSE  T ++     +++G   +  
Sbjct: 429 NQKEIDECNHKLERLEREKVTLNEELEKQLDELKN-KSEPLTEKRLKCSDDLVG--LKEQ 485

Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVP 180
           V SAK   E  + +SEL+I    ++ ET+K   L+++ E+ + +LTE++   +EL+  +P
Sbjct: 486 VNSAKA--ELQLHESELKILKQVETTETRKYESLKSSFEESEKSLTEKRAQLDELSETIP 543

Query: 181 AMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSE 240
            M+S+IA   A L  L +EE  +  Q  KL  +++E+  SMQ  RSNN+++DF+M+LK E
Sbjct: 544 RMKSDIASKTAELDKLVKEERNMTLQRNKLKEQINERSSSMQAQRSNNKVLDFLMRLKME 603

Query: 241 NRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVI 300
             + GI GRLG+LGGID KYD+A+ST CG L+ IV +  E G   IAA+K+ NVGR  +I
Sbjct: 604 GSLPGIYGRLGNLGGIDAKYDVAISTCCGRLDNIVADVYETGAEAIAALKKHNVGRATLI 663

Query: 301 PLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360
            LDKM+ +      + +TPENVPRL DL+QV+DE+++ AFYFA ++TLV  +L  A RI 
Sbjct: 664 TLDKMENHRRNANSRIQTPENVPRLFDLVQVEDERVKTAFYFALKDTLVCDNLEDASRIA 723

Query: 361 YSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMV 403
           Y    YR+VTL G IIE + T+             SGGG +M 
Sbjct: 724 YGAMRYRVVTLRGDIIELAGTM-------------SGGGTQMF 753

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386590|ref|XP_002051987.1| GJ24094 [Drosophila virilis] gi|194148444|gb|EDW64142.1| GJ24094 [Drosophila virilis]

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 147/345 (42%), Positives = 216/345 (62%), Gaps = 23/345 (6%)

Query: 61  NMKNLGEHETKVQQMEQE-LTANLESIKKCTDEMESAKSELKTVEKKGKESN-VIGSKFR 118
           N K + E + K++++E+E LT N E  K+ T  +   +SE  T EK+ K S+ +IG   +
Sbjct: 433 NAKEIEECQHKLERLEKEKLTLNEELEKQLT--LLKEQSEPLT-EKRLKCSDELIG--LK 487

Query: 119 WSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTR 178
            +V +A  R E  + +S+L+I    ++ E +K   L+++ E  Q +L    T  EEL+T 
Sbjct: 488 EAVNTA--REELQVHESKLKILKQVETTEARKYESLKSSYESAQQSLQNMTTKLEELSTN 545

Query: 179 VPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLK 238
           +P ++ EI    A +  L +EE  L  Q  KL  E++E+  +MQ  RSN++++DF+M++K
Sbjct: 546 MPQLQEEIRTKSAEVEKLAKEERNLAMQCGKLREEINERSSNMQAQRSNDKVLDFLMRMK 605

Query: 239 SENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVN 298
           +E ++ GILGRLGDLGGID KYDIA+STACG L+ IVT+T +   A I A+K+ NVGR N
Sbjct: 606 AEGKIPGILGRLGDLGGIDAKYDIAISTACGRLDNIVTDTYDTATAAIKALKQHNVGRAN 665

Query: 299 VIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKR 358
            IPL++M+ + S+ + +  TPENVPRL DL+QV+DE+++ AFY A   TLVA DL Q  R
Sbjct: 666 FIPLNRMEHWRSKSH-RINTPENVPRLYDLVQVEDERVKTAFYMALHNTLVATDLEQGSR 724

Query: 359 IGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMV 403
           I Y    +R+VTL G IIE + T+             SGGG R V
Sbjct: 725 IAYGRERFRVVTLRGEIIEQAGTM-------------SGGGNRPV 756

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114514|ref|XP_002001812.1| GI14952 [Drosophila mojavensis] gi|193912387|gb|EDW11254.1| GI14952 [Drosophila mojavensis]

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 176/277 (63%), Gaps = 14/277 (5%)

Query: 127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
           R E  + +S+L+I    ++ E +K   L+++ E  Q +L    +  EEL T +P +E EI
Sbjct: 494 REEVQVHESKLKILKQVETTEARKYESLKSSYESAQQSLESMTSKLEELNTNMPQLEQEI 553

Query: 187 AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGI 246
               A +  L+ EE  L  Q  KL  E++E+  +MQ  RSN++++DF+M++K+E ++ GI
Sbjct: 554 RTKSAEVQKLSHEERNLAVQCSKLREEINERSSNMQAQRSNDKVLDFLMRMKAEGKIPGI 613

Query: 247 LGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ 306
           LGRLGDLGGID KYDIA+STACG L+ IVT+T +   A I A+K+ NVGR N IPL++M+
Sbjct: 614 LGRLGDLGGIDAKYDIAISTACGRLDNIVTDTYDTATAAIKALKQYNVGRANFIPLNRME 673

Query: 307 QYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGY 366
            + S+ + +  TPENVPRL DL+QV+DE++R AFY A   TLVA DL Q  RI Y    +
Sbjct: 674 HWRSKSH-RINTPENVPRLYDLVQVEDERVRTAFYMALHNTLVATDLEQGSRIAYGRERF 732

Query: 367 RMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMV 403
           R+VTL G IIE + T+             SGGG R V
Sbjct: 733 RVVTLRGEIIEQAGTM-------------SGGGNRPV 756

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28317138|gb|AAD46883.2|AF160943_1 LD20207p, partial [Drosophila melanogaster]

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 173/275 (62%), Gaps = 13/275 (4%)

Query: 129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAE 188
           E  + +S+L+I    ++ E++K   L+++ E+ Q +L E+ T  +EL   +P M++EIA 
Sbjct: 503 EVQVFESQLKILKQAETTESRKYETLKSSYEQSQKSLEEKVTRVDELKESIPRMKTEIAS 562

Query: 189 SRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILG 248
             A +  + +EE  L  Q  KL  E++E+   MQ  RSNN+++DF+M++K E ++ GILG
Sbjct: 563 KSAEVDKMVKEERNLSMQCNKLRTEINERSSVMQAQRSNNKVLDFLMRMKMEGKIPGILG 622

Query: 249 RLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQY 308
           RLGDLGGID KYDIA+STACG L+ IVT+  E   A I A+K  NVGR   I LDK++ +
Sbjct: 623 RLGDLGGIDAKYDIAISTACGRLDNIVTDNYETASAAIGALKEYNVGRATFITLDKIEHH 682

Query: 309 HSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRM 368
             +   +  TPENVPRL DL++V+D+++R AFYFA R TLV  DL Q  RI Y    YR+
Sbjct: 683 RREANSRINTPENVPRLYDLVKVEDDRVRTAFYFALRNTLVCDDLEQGTRIAYGRERYRV 742

Query: 369 VTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMV 403
           VTL G +IE + T+             SGGG R +
Sbjct: 743 VTLRGEMIEMTGTM-------------SGGGSRPI 764

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6469332|gb|AAF13306.1|AF185287_1 XCAP-C/SMC4 homolog Gluon [Drosophila melanogaster]

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 173/275 (62%), Gaps = 13/275 (4%)

Query: 129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAE 188
           E  + +S+L+I    ++ E++K   L+++ E+ Q +L E+ T  +EL   +P M++EIA 
Sbjct: 503 EVQVFESQLKILKQAETTESRKYETLKSSYEQSQKSLEEKVTRVDELKESIPRMKTEIAS 562

Query: 189 SRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILG 248
             A +  + +EE  L  Q  KL  E++E+   MQ  RSNN+++DF+M++K E ++ GILG
Sbjct: 563 KSAEVDKMVKEERNLSMQCNKLRTEINERSSVMQAQRSNNKVLDFLMRMKMEGKIPGILG 622

Query: 249 RLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQY 308
           RLGDLGGID KYDIA+STACG L+ IVT+  E   A I A+K  NVGR   I LDK++ +
Sbjct: 623 RLGDLGGIDAKYDIAISTACGRLDNIVTDNYETASAAIGALKEYNVGRATFITLDKIEHH 682

Query: 309 HSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRM 368
             +   +  TPENVPRL DL++V+D+++R AFYFA R TLV  DL Q  RI Y    YR+
Sbjct: 683 RREANSRINTPENVPRLYDLVKVEDDRVRTAFYFALRNTLVCDDLEQGTRIAYGRERYRV 742

Query: 369 VTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMV 403
           VTL G +IE + T+             SGGG R +
Sbjct: 743 VTLRGEMIEMTGTM-------------SGGGSRPI 764

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24584683|ref|NP_723996.1| gluon [Drosophila melanogaster] gi|6014602|gb|AAF01416.1|AF186472_1 condensin subunit SMC4 [Drosophila melanogaster] gi|7298332|gb|AAF53560.1| gluon [Drosophila melanogaster] gi|159884137|gb|ABX00747.1| LD13578p [Drosophila melanogaster]

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 173/275 (62%), Gaps = 13/275 (4%)

Query: 129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAE 188
           E  + +S+L+I    ++ E++K   L+++ E+ Q +L E+ T  +EL   +P M++EIA 
Sbjct: 503 EVQVFESQLKILKQAETTESRKYETLKSSYEQSQKSLEEKVTRVDELKESIPRMKTEIAS 562

Query: 189 SRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILG 248
             A +  + +EE  L  Q  KL  E++E+   MQ  RSNN+++DF+M++K E ++ GILG
Sbjct: 563 KSAEVDKMVKEERNLSMQCNKLRTEINERSSVMQAQRSNNKVLDFLMRMKMEGKIPGILG 622

Query: 249 RLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQY 308
           RLGDLGGID KYDIA+STACG L+ IVT+  E   A I A+K  NVGR   I LDK++ +
Sbjct: 623 RLGDLGGIDAKYDIAISTACGRLDNIVTDNYETASAAIGALKEYNVGRATFITLDKIEHH 682

Query: 309 HSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRM 368
             +   +  TPENVPRL DL++V+D+++R AFYFA R TLV  DL Q  RI Y    YR+
Sbjct: 683 RREANSRINTPENVPRLYDLVKVEDDRVRTAFYFALRNTLVCDDLEQGTRIAYGRERYRV 742

Query: 369 VTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMV 403
           VTL G +IE + T+             SGGG R +
Sbjct: 743 VTLRGEMIEMTGTM-------------SGGGSRPI 764

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207352|gb|EFN85102.1| Structural maintenance of chromosomes protein 4 [Harpegnathos saltator]

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 123/283 (43%), Positives = 181/283 (63%), Gaps = 15/283 (5%)

Query: 117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELT 176
            R +V  AK   E DIA+SELE++ S +  E  KL  L   +E+  TT+ ER      LT
Sbjct: 465 LRKNVNQAKA--EHDIAQSELELYTSVEKVEKNKLNSLRETIERNSTTIQERLEGLSLLT 522

Query: 177 TRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQ 236
           T++PA ES + ++++ +  +   E ++  +++KL     E+R +MQTSRS NR++D +M+
Sbjct: 523 TKIPATESNLNQTQSEMNKMKAHEVEMTARLKKLRVTFEEQRSAMQTSRSQNRILDSLMR 582

Query: 237 LKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGR 296
            K E R+ GI GRLGDLG ID KYD+AVSTACG L+ IV +T+   +A +  +++ ++GR
Sbjct: 583 EKREGRIPGIFGRLGDLGAIDAKYDVAVSTACGPLDNIVVDTMATAQACVTFLRQNDIGR 642

Query: 297 VNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQA 356
              IPL+K Q++ S+C     TPENVPRL DLI+V+D+++  AFY+  ++TLVAQDL+QA
Sbjct: 643 ATFIPLEKQQRFLSRCSRSIDTPENVPRLFDLIRVEDKRVLPAFYYGLQDTLVAQDLDQA 702

Query: 357 KRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGG 399
            RI Y    YR+VTL+G ++E S T+             SGGG
Sbjct: 703 TRIAYGRMRYRVVTLKGELVELSGTM-------------SGGG 732

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195579640|ref|XP_002079669.1| GD21899 [Drosophila simulans] gi|194191678|gb|EDX05254.1| GD21899 [Drosophila simulans]

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 196/319 (61%), Gaps = 23/319 (7%)

Query: 91  DEMESAKSEL-KTV----EKKGKESN-VIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQ 144
           +E+E  ++EL KT     EK+ K S+ V+G   +  V +AK   E  + +S+L+I    +
Sbjct: 463 EELEKQQAELTKTTAPLTEKRLKLSDEVVG--LKEKVNTAKG--ELQVFESQLKILKQAE 518

Query: 145 SKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLL 204
           + E++K   L+++ E++Q +L E+ T  +EL   +P M++EI    A +  + +EE  L 
Sbjct: 519 TTESRKYETLKSSYEQLQKSLEEKVTRVDELKESIPQMKTEIVSKSAEVDKMVKEERNLS 578

Query: 205 DQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAV 264
            Q  KL  E++E+   MQ  RSNN+++DF+M++K E ++ GILGRLGDLGGID KYDIA+
Sbjct: 579 MQCNKLRTEINERSSVMQAQRSNNKVLDFLMRMKMEGKIPGILGRLGDLGGIDAKYDIAI 638

Query: 265 STACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPR 324
           STACG L+ IVT+  +   A I A+K  NVGR   I LDK++ +      +  TPENVPR
Sbjct: 639 STACGRLDNIVTDNYDTASAAIGALKEYNVGRATFITLDKIEHHRRDANSRINTPENVPR 698

Query: 325 LIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVA 384
           L DL++V+D+++R AFYFA R TLV  DL Q  RI Y    YR+VTL G +IE + T+  
Sbjct: 699 LYDLVKVEDDRVRTAFYFALRNTLVCDDLEQGTRIAYGRERYRVVTLRGEMIEMTGTM-- 756

Query: 385 QDLNQAKRIGYSGGGYRMV 403
                      SGGG R +
Sbjct: 757 -----------SGGGNRPI 764

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148683552|gb|EDL15499.1| structural maintenance of chromosomes 4 [Mus musculus]

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 153/443 (34%), Positives = 236/443 (53%), Gaps = 64/443 (14%)

Query: 9   DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEH 68
           +E R EKL RV++VE +  ALE E   A+ FL LEN + +K N I QY  Y     + E 
Sbjct: 276 NEHRGEKLNRVKMVEKEKDALEGEKNIAIEFLTLENEMFKKKNHICQYYIYDLQNRIAEI 335

Query: 69  ETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKK---------------------- 106
            T+ +++ ++     E     ++EM++  S +K VEKK                      
Sbjct: 336 TTQKEKIHEDTKEITEKSNVLSNEMKAKNSAVKDVEKKLNKVTKFIEQNKEKFTQLDLED 395

Query: 107 ---------------------GKESNVIGSK----FRWSVFSAKTRFECDIAKSELEIFL 141
                                 K+   I  K    F  SV  A+++ E  +A+SEL+I+L
Sbjct: 396 VQVREKLKHATSKAKKLEKQLQKDKEKIQEKELMGFNKSVNEARSKME--VAQSELDIYL 453

Query: 142 STQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEA 201
           S  +    +L+  +  L     TL ERK   +++ T++P  + E+ E    L  LT+EE 
Sbjct: 454 SRHNTAVSQLSKAKEALITASETLKERKAAIKDINTKLPQTQQELKEKEKELQKLTQEEI 513

Query: 202 KLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYD 261
            L   V  L ++V E + S+  +RS  +++D ++Q K   R+ GI GRLGDLG ID+KYD
Sbjct: 514 NLKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYD 573

Query: 262 IAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPEN 321
           IA+S+ C AL+YIV ++++  +  +  +K+ N+G    I LDKM  + ++   K +TPEN
Sbjct: 574 IAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVW-AKKMSKIQTPEN 632

Query: 322 VPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSE 380
            PRL DL++V++E+IR AFYFA R+TLVA +L+QA R+ Y     +R+VTL+G IIE S 
Sbjct: 633 TPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSG 692

Query: 381 TLVAQDLNQAKRIGYSGGGYRMV 403
           T+             SGGG +++
Sbjct: 693 TM-------------SGGGSKVM 702

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405961148|gb|EKC26993.1| Structural maintenance of chromosomes protein 4 [Crassostrea gigas]

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/359 (37%), Positives = 215/359 (59%), Gaps = 27/359 (7%)

Query: 63  KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWS 120
           K + +H+ K++++E +     + +      MES K+E K +  EK  KE+ ++  + + S
Sbjct: 402 KTITDHKKKLEKLEGDKKIEEDKLAAV---MESLKTETKGLQEEKDKKETELL--ELQKS 456

Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVP 180
           V   K+    +IA+SEL+I+LS Q  ET KL +++ N  K ++TL +RK+    L   +P
Sbjct: 457 VNETKSTL--NIAQSELDIYLSNQQSETSKLKEMQKNQHKAESTLKDRKSEAANLVKNIP 514

Query: 181 AMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSE 240
            ME  + ++++ L      ++KL +Q+  L  +V E R SMQ +RS  ++ID +M LK  
Sbjct: 515 EMEKLLQKAKSDLETAVDSDSKLSEQLRSLRAKVEEARSSMQAARSKGKVIDSLMALKKS 574

Query: 241 NRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVI 300
            ++ G+ GRLGDLG ID KYD+A+STACGAL++IV +TV + +  +  +K+ N+G    I
Sbjct: 575 GQMPGLYGRLGDLGAIDMKYDVAISTACGALDHIVVDTVTSAQKCVEYLKKNNIGAATFI 634

Query: 301 PLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360
            L+KM+++      K +TPE VPRL DL++ ++EKI  AFYFA R+TLVA DL+QA RI 
Sbjct: 635 CLEKMERWKEHTKRKIQTPETVPRLFDLVKTKEEKILPAFYFALRDTLVANDLDQATRIA 694

Query: 361 YSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGY-----RMVTLEGAIIEPSE 414
           Y    YR+VTL+G +++ S T+             SGGG      RM +   + ++P E
Sbjct: 695 YGKTRYRVVTLQGQLLDQSGTM-------------SGGGKTVCRGRMGSSIASEVDPKE 740

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
UNIPROTKB|F1MAD9	1286	Smc4 "Structural maintenance o	0.691	0.285	0.334	2.5e-62
MGI|MGI:1917349	1286	Smc4 "structural maintenance o	0.691	0.285	0.326	1.4e-61
ZFIN|ZDB-GENE-020419-21	1289	smc4 "structural maintenance o	0.693	0.285	0.303	2e-59
UNIPROTKB|F1NDN4	1274	SMC4 "Structural maintenance o	0.685	0.285	0.302	1.6e-55
UNIPROTKB|F1P3C6	1300	SMC4 "Structural maintenance o	0.685	0.28	0.302	1.7e-55
FB|FBgn0015391	1409	glu "gluon" [Drosophila melano	0.926	0.349	0.308	6.7e-54
UNIPROTKB|Q9ERA5	1243	SMC4 "Structural maintenance o	0.956	0.408	0.291	1.6e-52
UNIPROTKB|E9PD53	1263	SMC4 "Structural maintenance o	0.717	0.301	0.329	2.3e-52
UNIPROTKB|Q9NTJ3	1288	SMC4 "Structural maintenance o	0.717	0.295	0.329	2.5e-52
UNIPROTKB|F1SH51	1288	SMC4 "Structural maintenance o	0.770	0.317	0.315	4.1e-52

UNIPROTKB|F1MAD9 Smc4 "Structural maintenance of chromosomes protein" [Rattus norvegicus (taxid:10116)]

 Score = 528 (190.9 bits), Expect = 2.5e-62, Sum P(2) = 2.5e-62
 Identities = 127/380 (33%), Positives = 217/380 (57%)

Query:     7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERY-VNMKN 64
             K+ E+  EK T++ L   D++  E +L+ A +  + LE  +Q+   ++ + +      KN
Sbjct:   379 KFIEQNKEKFTQLDL--EDVQVRE-KLKHATSKAKKLEKQLQKDKEKVEELKSIPAKSKN 435

Query:    65 -LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFS 123
              + E  T+   +E+E     + +K+  D ++     L+  EK+ +E  ++G  F  SV  
Sbjct:   436 VINETTTRNNSLEKEREKEEKKLKEVMDSLKQETQGLQK-EKEIQEKELMG--FNKSVNE 492

Query:   124 AKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAME 183
             A+++ E  +A+SEL+I+LS  +    +L+  +  L     TL ERK   +++ T++P  +
Sbjct:   493 ARSKME--VAQSELDIYLSRHNTAVSQLSKAKDALITASETLKERKAAIKDINTKLPQAQ 550

Query:   184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRV 243
              E+ E    L  LT+EE  L   V  L ++V E + S+ T+RS  +++D ++Q K   R+
Sbjct:   551 QELKEKEKELQKLTQEEINLKSLVHDLFQKVEEAKSSLATNRSRGKVLDAIIQEKKSGRI 610

Query:   244 SXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLD 303
                           +KYDIA+S+ C AL+YIV ++++  +  +  +K+ N+G    I LD
Sbjct:   611 PGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGVATFIGLD 670

Query:   304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSG 363
             KM  + +Q  +K +TPEN PRL DL++V++E+IR AFYFA R+TLVA +L+QA R+ Y  
Sbjct:   671 KMAVW-AQKMNKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQR 729

Query:   364 GG-YRMVTLEGAIIEPSETL 382
                +R+VTL+G IIE S T+
Sbjct:   730 DRRWRVVTLQGQIIEQSGTM 749

GO:0000796 "condensin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0010032 "meiotic chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IEA

MGI|MGI:1917349 Smc4 "structural maintenance of chromosomes 4" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 1.4e-61, Sum P(2) = 1.4e-61
 Identities = 124/380 (32%), Positives = 213/380 (56%)

Query:     7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERY-VNMKN 64
             K+ E+  EK T++ L   D++  E +L+ A +  + LE  +Q+   ++ + +      K 
Sbjct:   379 KFIEQNKEKFTQLDL--EDVQVRE-KLKHATSKAKKLEKQLQKDKEKVEELKSVPAKSKT 435

Query:    65 -LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFS 123
              + E  T+   +E+E     + +K+  D ++     L+  EK+ +E  ++G  F  SV  
Sbjct:   436 VINETTTRNNSLEKEREKEEKKLKEVMDSLKQETQGLQK-EKEIQEKELMG--FNKSVNE 492

Query:   124 AKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAME 183
             A+++ E  +A+SEL+I+LS  +    +L+  +  L     TL ERK   +++ T++P  +
Sbjct:   493 ARSKME--VAQSELDIYLSRHNTAVSQLSKAKEALITASETLKERKAAIKDINTKLPQTQ 550

Query:   184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRV 243
              E+ E    L  LT+EE  L   V  L ++V E + S+  +RS  +++D ++Q K   R+
Sbjct:   551 QELKEKEKELQKLTQEEINLKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRI 610

Query:   244 SXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLD 303
                           +KYDIA+S+ C AL+YIV ++++  +  +  +K+ N+G    I LD
Sbjct:   611 PGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLD 670

Query:   304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSG 363
             KM  +  +   K +TPEN PRL DL++V++E+IR AFYFA R+TLVA +L+QA R+ Y  
Sbjct:   671 KMTVWAKKM-SKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQR 729

Query:   364 GG-YRMVTLEGAIIEPSETL 382
                +R+VTL+G IIE S T+
Sbjct:   730 DRRWRVVTLQGQIIEQSGTM 749

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000796 "condensin complex" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=ISO

GO:0010032 "meiotic chromosome condensation" evidence=IMP

GO:0030261 "chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051276 "chromosome organization" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IMP

ZFIN|ZDB-GENE-020419-21 smc4 "structural maintenance of chromosomes 4" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 115/379 (30%), Positives = 210/379 (55%)

Query:     7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLG 66
             KY E + EK T++ L + +++      +      +L+  +Q+   ++ +           
Sbjct:   380 KYIESQKEKFTQLDLQDVEVREKLKHTKSKTK--KLQKQLQKDQEKLEEVRGVPASSEKI 437

Query:    67 EHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVE--KKGKESNVIGSKFRWSVFSA 124
               E   Q+ E E    LE  +K  + MES K E K ++  K+ KE  ++  +   SV   
Sbjct:   438 ITEASAQKEELEKKKLLEE-QKLAEVMESLKEETKGLQDDKEKKEKELL--ELSKSV--N 492

Query:   125 KTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMES 184
             +TR   D+A+SEL+I+LS  +    +L   ++ L++   TL ER+   ++L  ++PA E 
Sbjct:   493 ETRSRMDVAQSELDIYLSQHNTAINQLNQAKSALQETVDTLRERRAAIKDLQVKIPAQEE 552

Query:   185 EIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVS 244
             ++ +    L  ++ ++ +   QV  + ++V+E + S+ ++RS ++++D +MQ K   ++ 
Sbjct:   553 QLKKDERELEQISEQDKQTRAQVGDMRQKVAEAKSSLSSNRSRSKVLDTLMQQKRSGKIP 612

Query:   245 XXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDK 304
                          +KYD+A+S++CG+L+ I+ +T++  +  +  +K QN+G    I LDK
Sbjct:   613 GILGRLGDLGAIDEKYDVAISSSCGSLDNILVDTIDTAQKCVTFLKAQNIGVATFIGLDK 672

Query:   305 MQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG 364
             M+ +  Q      TPEN+PRL D+++V+DE +R AFYFA R+TLVA+DL QA R+ +   
Sbjct:   673 MKVWQ-QSMGSISTPENIPRLFDMVRVKDESVRPAFYFALRDTLVAKDLEQATRVAFQKD 731

Query:   365 G-YRMVTLEGAIIEPSETL 382
               +R+VTL+G IIE + T+
Sbjct:   732 KRWRVVTLQGQIIEQAGTM 750

GO:0030261 "chromosome condensation" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NDN4 SMC4 "Structural maintenance of chromosomes protein" [Gallus gallus (taxid:9031)]

 Score = 479 (173.7 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 114/377 (30%), Positives = 205/377 (54%)

Query:    10 EERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERYVNM--KNLG 66
             EE   K T++ L   D+K  E +L+ A +  + LE  +Q+   ++ + +   +   KN+ 
Sbjct:   355 EENKNKFTQLDL--QDVKVRE-KLKHAKSKAKKLEKQLQKDKEKVEELKNVPSSSEKNIS 411

Query:    67 EHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKT 126
             +  +K + +E+      E +K+    ++    E++  EK+GKE  ++  +F  +V  A++
Sbjct:   412 DATSKKELLEKAKDKEEEKLKQVMSSLQEETREIQK-EKEGKEKELM--EFCKTVNDARS 468

Query:   127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
             +   D+A++EL+I+L+  +    +L + +  L     TL +RK   +++  ++P  E E+
Sbjct:   469 KM--DVAQAELDIYLTRYNTAVSQLDEAKEALMTTSETLKQRKAAIKDIDIKLPTAEQEL 526

Query:   187 AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSXX 246
              E   +L  L +EE    D V  L ++V E + S+   RS  ++++ +++ K    +S  
Sbjct:   527 KEKENKLEKLKKEELNAQDLVRNLRQKVEEAKSSLAQHRSRGKVLEALLEQKRSGSISGI 586

Query:   247 XXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ 306
                        +KYD+A+S++C AL+YIV +T++  +  +  +K+  +G    I LDKM 
Sbjct:   587 HGRLGDLGAIDEKYDVAISSSCAALDYIVVDTIDIAQQCVEFLKKTEIGAATFIALDKMA 646

Query:   307 QYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG- 365
              +      K  TPEN PRLIDL++V+D+    AFYFA R+TLV +DL  A RI +     
Sbjct:   647 VWKKNL-QKIPTPENAPRLIDLVKVEDKSFSPAFYFALRDTLVVKDLEDATRIAFQRDKR 705

Query:   366 YRMVTLEGAIIEPSETL 382
             +R+VTL+G IIE S T+
Sbjct:   706 WRVVTLKGEIIEQSGTM 722

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0010032 "meiotic chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IEA

UNIPROTKB|F1P3C6 SMC4 "Structural maintenance of chromosomes protein" [Gallus gallus (taxid:9031)]

 Score = 479 (173.7 bits), Expect = 1.7e-55, Sum P(2) = 1.7e-55
 Identities = 114/377 (30%), Positives = 205/377 (54%)

Query:    10 EERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERYVNM--KNLG 66
             EE   K T++ L   D+K  E +L+ A +  + LE  +Q+   ++ + +   +   KN+ 
Sbjct:   381 EENKNKFTQLDL--QDVKVRE-KLKHAKSKAKKLEKQLQKDKEKVEELKNVPSSSEKNIS 437

Query:    67 EHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKT 126
             +  +K + +E+      E +K+    ++    E++  EK+GKE  ++  +F  +V  A++
Sbjct:   438 DATSKKELLEKAKDKEEEKLKQVMSSLQEETREIQK-EKEGKEKELM--EFCKTVNDARS 494

Query:   127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
             +   D+A++EL+I+L+  +    +L + +  L     TL +RK   +++  ++P  E E+
Sbjct:   495 KM--DVAQAELDIYLTRYNTAVSQLDEAKEALMTTSETLKQRKAAIKDIDIKLPTAEQEL 552

Query:   187 AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSXX 246
              E   +L  L +EE    D V  L ++V E + S+   RS  ++++ +++ K    +S  
Sbjct:   553 KEKENKLEKLKKEELNAQDLVRNLRQKVEEAKSSLAQHRSRGKVLEALLEQKRSGSISGI 612

Query:   247 XXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ 306
                        +KYD+A+S++C AL+YIV +T++  +  +  +K+  +G    I LDKM 
Sbjct:   613 HGRLGDLGAIDEKYDVAISSSCAALDYIVVDTIDIAQQCVEFLKKTEIGAATFIALDKMA 672

Query:   307 QYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG- 365
              +      K  TPEN PRLIDL++V+D+    AFYFA R+TLV +DL  A RI +     
Sbjct:   673 VWKKNL-QKIPTPENAPRLIDLVKVEDKSFSPAFYFALRDTLVVKDLEDATRIAFQRDKR 731

Query:   366 YRMVTLEGAIIEPSETL 382
             +R+VTL+G IIE S T+
Sbjct:   732 WRVVTLKGEIIEQSGTM 748

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0010032 "meiotic chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IEA

FB|FBgn0015391 glu "gluon" [Drosophila melanogaster (taxid:7227)]

 Score = 558 (201.5 bits), Expect = 6.7e-54, Sum P(2) = 6.7e-54
 Identities = 160/518 (30%), Positives = 264/518 (50%)

Query:     2 EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVN 61
             E +  K  EE    + + + ++  L  +E    +  + +E  N  QRK ++    +    
Sbjct:   371 ETIIRKEIEEYEALVKKREQIKKRLVTVESAYTEIQSTMENTN-KQRKKDKAQIEKNEKE 429

Query:    62 MKNLGEHETKVQQMEQELTANLESIK--KCT--DEMESAKSEL-KTV----EKKGKESN- 111
             +++L +   K Q+  ++    LES++  K T  +E+E  ++EL KT     EK+ K S+ 
Sbjct:   430 LEDLHKLPEKNQREIEDCNKKLESLEVNKVTLNEELEKQQAELTKTTAPLTEKRLKLSDE 489

Query:   112 VIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTL 171
             ++G K +  V +AK   E  + +S+L+I    ++ E++K   L+++ E+ Q +L E+ T 
Sbjct:   490 LVGLKEK--VNTAKG--EVQVFESQLKILKQAETTESRKYETLKSSYEQSQKSLEEKVTR 545

Query:   172 CEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLI 231
              +EL   +P M++EIA   A +  + +EE  L  Q  KL  E++E+   MQ  RSNN+++
Sbjct:   546 VDELKESIPRMKTEIASKSAEVDKMVKEERNLSMQCNKLRTEINERSSVMQAQRSNNKVL 605

Query:   232 DFVMQLKSENRVSXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKR 291
             DF+M++K E ++               KYDIA+STACG L+ IVT+  E   A I A+K 
Sbjct:   606 DFLMRMKMEGKIPGILGRLGDLGGIDAKYDIAISTACGRLDNIVTDNYETASAAIGALKE 665

Query:   292 QNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQ 351
              NVGR   I LDK++ +  +   +  TPENVPRL DL++V+D+++R AFYFA R TLV  
Sbjct:   666 YNVGRATFITLDKIEHHRREANSRINTPENVPRLYDLVKVEDDRVRTAFYFALRNTLVCD 725

Query:   352 DLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIE 411
             DL Q  RI Y    YR+VTL G +IE + T+        +  G  G   R  T E A   
Sbjct:   726 DLEQGTRIAYGRERYRVVTLRGEMIEMTGTMSGGGSRPIR--GKMGTQVRTKTAESADSS 783

Query:   412 PSETLVAQDLN-QAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVST 470
                    +D+  QA+ +  +   Y     +G++     T+  G          R A   T
Sbjct:   784 QISQKALEDMQIQAEEL-QARVNYCQEQ-QGSLEREIQTLKNGLQRD-EAEYKRLAVSIT 840

Query:   471 D-----TSLVKDLEVKEKRLASLETELRILSQQKMEVE 503
                    S +K  E + +R+    T+ R + +++ ++E
Sbjct:   841 SLEQQMASNLKQCEAQRQRMLKKTTDERAVKEREEQIE 878

GO:0007076 "mitotic chromosome condensation" evidence=ISS;NAS;IMP

GO:0000796 "condensin complex" evidence=ISS;NAS;TAS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0005694 "chromosome" evidence=IDA

GO:0000070 "mitotic sister chromatid segregation" evidence=ISS;NAS;IMP

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0000819 "sister chromatid segregation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB|Q9ERA5 SMC4 "Structural maintenance of chromosomes protein 4" [Microtus arvalis (taxid:47230)]

 Score = 534 (193.0 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
 Identities = 156/535 (29%), Positives = 274/535 (51%)

Query:     7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERY-VNMKN 64
             K+ EE  EK  ++ L   D++  E +L+ A +  + LE  +Q+   ++ + +      K 
Sbjct:   336 KFIEENKEKFRQLDL--EDVQVRE-KLKHATSKAKKLEKQLQKDKEKVEELKSIPAKSKT 392

Query:    65 L-GEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFS 123
             +  E  TK   +E+E     + +K+  D ++     L+  EK+ +E  ++G  F  SV  
Sbjct:   393 IINETTTKSSSLEKEKEKEEKKLKEVMDSLKQETQGLQK-EKEDQEKELMG--FNKSVNE 449

Query:   124 AKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAME 183
             A+++ E  +A+SEL+I+LS  +    +L+  +  L     TL ERK    E+ T++P  +
Sbjct:   450 ARSKME--VAQSELDIYLSRHNTAVSQLSKAKETLITASETLKERKAAIGEINTKLPQTQ 507

Query:   184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRV 243
              E+ E    L  LT+EE  L   V  L ++V E + S+  +RS  +++D ++Q K   R+
Sbjct:   508 QELKEKEKELQKLTQEEINLKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRI 567

Query:   244 SXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLD 303
                           +KYDIA+S+ C AL+YIV ++++  +  +  +KR N+G    I LD
Sbjct:   568 PGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKRHNIGVATFIGLD 627

Query:   304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSG 363
             KM  +  +   K +TPEN PRL DL++ ++E+IR AFYFA R+TLVA +L+QA R+ Y  
Sbjct:   628 KMTVWAKKMA-KIQTPENTPRLFDLVKAKNEEIRQAFYFALRDTLVADNLDQATRVAYQK 686

Query:   364 GG-YRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLN 422
                +R+VTL+G IIE S T+     ++  R G  G    +V +    +   E+ + +   
Sbjct:   687 DRRWRVVTLQGQIIEQSGTMTGGG-SKVMR-GRMGSSV-IVEISEEEVNKMESQLQKHSK 743

Query:   423 QAKRIGYSGGGY--RMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEV 480
             QA+RI      +  R+V L  +  E   T+    ++ I+GL  ++  ++     +K+LE 
Sbjct:   744 QARRIQEQKVQHEERVVKLRHSEREMRNTLEKFAAS-IQGLSDQEEYLTVQ---IKELEA 799

Query:   481 KEKRLASLETELRILSQQ----KMEVETQLNCTGNELKYKKQEYDTCLIDVKSPK 531
                  A  + + ++L +     K E +      G      K+ +DT +I++ + K
Sbjct:   800 NVLTTAPDKKKQKLLEENVSAFKKEYDAVAEKAGKVEAEVKRLHDT-IIEINNRK 853

GO:0007076 "mitotic chromosome condensation" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

UNIPROTKB|E9PD53 SMC4 "Structural maintenance of chromosomes protein" [Homo sapiens (taxid:9606)]

 Score = 529 (191.3 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 130/395 (32%), Positives = 216/395 (54%)

Query:     7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERYVNMKN- 64
             K+ EE  EK T++ L   D++  E +L+ A +  + LE  +Q+   ++ +++      N 
Sbjct:   356 KFIEENKEKFTQLDL--EDVQVRE-KLKHATSKAKKLEKQLQKDKEKVEEFKSIPAKSNN 412

Query:    65 -LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFS 123
              + E  T+   +E+E     + +K+  D ++     L+  EK+ +E  ++G  F  SV  
Sbjct:   413 IINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQK-EKESREKELMG--FSKSVNE 469

Query:   124 AKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAME 183
             A+++   D+A+SEL+I+LS  +    +L   +  L     TL ERK    ++  ++P  E
Sbjct:   470 ARSKM--DVAQSELDIYLSRHNTAVSQLTKAKEALIAASETLKERKAAIRDIEGKLPQTE 527

Query:   184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRV 243
              E+ E    L  LT+EE      V  L ++V E + S+  +RS  +++D ++Q K   R+
Sbjct:   528 QELKEKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRI 587

Query:   244 SXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLD 303
                           +KYD+A+S+ C AL+YIV ++++  +  +  +KRQN+G    I LD
Sbjct:   588 PGIYGRLGDLGAIDEKYDVAISSCCHALDYIVVDSIDIAQECVNFLKRQNIGVATFIGLD 647

Query:   304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSG 363
             KM  +  +  +  +TPEN PRL DL++V+DEKIR AFYFA R+TLVA +L+QA R+ Y  
Sbjct:   648 KMAVWAKKMTE-IQTPENTPRLFDLVKVKDEKIRQAFYFALRDTLVADNLDQATRVAYQK 706

Query:   364 GG-YRMVTLEGAIIEPSETLVAQDLNQAK-RIGYS 396
                +R+VTL+G IIE S T+        K R+G S
Sbjct:   707 DRRWRVVTLQGQIIEQSGTMTGGGSKVMKGRMGSS 741

GO:0005524 "ATP binding" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9NTJ3 SMC4 "Structural maintenance of chromosomes protein 4" [Homo sapiens (taxid:9606)]

 Score = 529 (191.3 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
 Identities = 130/395 (32%), Positives = 216/395 (54%)

Query:     7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERYVNMKN- 64
             K+ EE  EK T++ L   D++  E +L+ A +  + LE  +Q+   ++ +++      N 
Sbjct:   381 KFIEENKEKFTQLDL--EDVQVRE-KLKHATSKAKKLEKQLQKDKEKVEEFKSIPAKSNN 437

Query:    65 -LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFS 123
              + E  T+   +E+E     + +K+  D ++     L+  EK+ +E  ++G  F  SV  
Sbjct:   438 IINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQK-EKESREKELMG--FSKSVNE 494

Query:   124 AKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAME 183
             A+++   D+A+SEL+I+LS  +    +L   +  L     TL ERK    ++  ++P  E
Sbjct:   495 ARSKM--DVAQSELDIYLSRHNTAVSQLTKAKEALIAASETLKERKAAIRDIEGKLPQTE 552

Query:   184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRV 243
              E+ E    L  LT+EE      V  L ++V E + S+  +RS  +++D ++Q K   R+
Sbjct:   553 QELKEKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRI 612

Query:   244 SXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLD 303
                           +KYD+A+S+ C AL+YIV ++++  +  +  +KRQN+G    I LD
Sbjct:   613 PGIYGRLGDLGAIDEKYDVAISSCCHALDYIVVDSIDIAQECVNFLKRQNIGVATFIGLD 672

Query:   304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSG 363
             KM  +  +  +  +TPEN PRL DL++V+DEKIR AFYFA R+TLVA +L+QA R+ Y  
Sbjct:   673 KMAVWAKKMTE-IQTPENTPRLFDLVKVKDEKIRQAFYFALRDTLVADNLDQATRVAYQK 731

Query:   364 GG-YRMVTLEGAIIEPSETLVAQDLNQAK-RIGYS 396
                +R+VTL+G IIE S T+        K R+G S
Sbjct:   732 DRRWRVVTLQGQIIEQSGTMTGGGSKVMKGRMGSS 766

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0010032 "meiotic chromosome condensation" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IEA

GO:0000796 "condensin complex" evidence=IDA;TAS

GO:0007076 "mitotic chromosome condensation" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0000070 "mitotic sister chromatid segregation" evidence=TAS

GO:0005524 "ATP binding" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SH51 SMC4 "Structural maintenance of chromosomes protein" [Sus scrofa (taxid:9823)]

 Score = 524 (189.5 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
 Identities = 134/425 (31%), Positives = 229/425 (53%)

Query:     7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERY-VNMKN 64
             K+ EE  EK T++ L   D++  E +L+ A +  + LE  +Q+   ++ +++      +N
Sbjct:   381 KFIEENKEKFTKLDL--EDVQVRE-KLKHATSKAKKLEKQLQKDKEKVEEFKSIPAKSEN 437

Query:    65 L-GEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFS 123
             +  E  T+   +E+E     + +K+  D ++     L+  EK+ +E  ++G  F  SV  
Sbjct:   438 IITETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQK-EKESQEKELMG--FSKSVNE 494

Query:   124 AKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAME 183
             A+++   D+A+SEL+I+LS  +    +L+  +  L     TL ERK    ++  ++P  E
Sbjct:   495 ARSKM--DVAQSELDIYLSRYNTAVSQLSKAKDALMAASETLKERKAAIGDIEAKLPQTE 552

Query:   184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRV 243
              E+ E    L  LT+EE      V  L ++V E + S+  +RS  +++D ++Q K   R+
Sbjct:   553 CELKEKEKELQKLTQEEINFKSLVRDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKTGRI 612

Query:   244 SXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLD 303
                           +KYD+A+S+ C AL+YIV ++++  +  +  +KRQN+G    I LD
Sbjct:   613 PGIYGRLGDLGAIDEKYDVAISSCCHALDYIVVDSIDTAQECVNFLKRQNIGVATFIGLD 672

Query:   304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSG 363
             KM  +  +   + +TPEN PRL DL++V+DEKIR AFYFA R+TLVA +L+QA R+ Y  
Sbjct:   673 KMAVWAKKM-TQIQTPENTPRLFDLVKVKDEKIRQAFYFALRDTLVADNLDQATRVAYQK 731

Query:   364 GG-YRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLN 422
                +R+VTL+G IIE S T+        K  G  G    +V +    +   E+ + +D  
Sbjct:   732 DRRWRVVTLQGQIIEQSGTMTGGGSKVMK--GRMGSSV-VVEISEEEVNKMESQLQRDSQ 788

Query:   423 QAKRI 427
             +A +I
Sbjct:   789 KAVQI 793

GO:0005634 "nucleus" evidence=IEA

GO:0051383 "kinetochore organization" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045132 "meiotic chromosome segregation" evidence=IEA

GO:0010032 "meiotic chromosome condensation" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	531
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-33
smart00968	120	smart00968, SMC_hinge, SMC proteins Flexible Hinge	3e-29
pfam06470	117	pfam06470, SMC_hinge, SMC proteins Flexible Hinge	1e-28
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-26
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-14
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score =  135 bits (343), Expect = 1e-33
 Identities = 99/378 (26%), Positives = 177/378 (46%), Gaps = 11/378 (2%)

Query: 7   KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLG 66
           +  EE  E    +  ++ +++ LE E+      LE E   + +  E    E    ++ L 
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLE-ELENELEELEERLEELKEKIEALK 336

Query: 67  EHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVF-SAK 125
           E   + + + +EL   L  +++  +E+E   S L   E+  +    +  +        A+
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALL--EELEELFEALREELAELEAELAE 394

Query: 126 TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185
            R E +  K E+E       + +++L DL+  L++++  L E +T  EEL   +  +E +
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ 454

Query: 186 IAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLK--SENRV 243
           + E R RL +L RE A+L +++++L +E+S     +    +  R    V  +    E+ +
Sbjct: 455 LEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Query: 244 SGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPL 302
            G+ G + +L  + +KY+ A+  A G  L  +V E  E  +  I  +K    GR   +PL
Sbjct: 515 PGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPL 574

Query: 303 DKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS 362
           D+++   S   D    P  +    DLI   D K   A  F   +TLV  DL QA+R+   
Sbjct: 575 DRIKPLRSLKSD--AAPGFLGLASDLIDF-DPKYEPAVRFVLGDTLVVDDLEQARRLARK 631

Query: 363 -GGGYRMVTLEGAIIEPS 379
               YR+VTL+G ++EPS
Sbjct: 632 LRIKYRIVTLDGDLVEPS 649

Length = 1163

>gnl|CDD|214944 smart00968, SMC_hinge, SMC proteins Flexible Hinge Domain

 Score =  111 bits (279), Expect = 3e-29
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 244 SGILGRLGDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPL 302
            G+LGR+ DL  +D KY+ A+  A G  L  +V +T E  +  I  +K+  +GR   +PL
Sbjct: 1   PGVLGRVADLISVDPKYETALEAALGGRLQAVVVDTEETAKKAIEFLKKNRLGRATFLPL 60

Query: 303 DKMQQYHSQC----YDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKR 358
           DK++                P  V   IDL++  D ++R A  +    TLV  DL  A+R
Sbjct: 61  DKIKPRSPAGSKLREALLPEPGFVGPAIDLVEY-DPELRPALEYLLGNTLVVDDLETARR 119

Query: 359 I 359
           +
Sbjct: 120 L 120

This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction. Length = 120

>gnl|CDD|219044 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain

 Score =  109 bits (275), Expect = 1e-28
 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 244 SGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPL 302
            G+ GRL DL  +D+ Y+ AV  A G  L  IV +  E  +A I  +K+ N+GR   +PL
Sbjct: 2   KGVYGRLADLIEVDEGYEKAVEAALGGRLQAIVVDDEETAKAAIEFLKKNNLGRATFLPL 61

Query: 303 DKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRI 359
           D+++            P     LIDL++  DEK+R A  +    TLV  DL++A  +
Sbjct: 62  DRIKP-RPLDDSPREIPGGATPLIDLVEYPDEKLRKALRYLLGNTLVVDDLDEALEL 117

This family represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction. Length = 117

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score =  113 bits (285), Expect = 3e-26
 Identities = 90/370 (24%), Positives = 168/370 (45%), Gaps = 21/370 (5%)

Query: 22  VETDLKALEPELRKAV-NFLELENCVQRKHNEIYQYERYVNMKNLGEHE---TKVQQMEQ 77
           V+  +  LE E+     +  E E  ++     + + E  ++ K L E E    ++++  +
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID-KLLAEIEELEREIEEERK 350

Query: 78  ELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKSEL 137
                 E   +  +E+E  ++EL+ V+K+  E+      +R  +   K + E +  K EL
Sbjct: 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL--EKLKREINELKREL 408

Query: 138 EIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRA------ 191
           +       + +++LADL A +  ++  + E +   E+    +   E ++ +  A      
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468

Query: 192 -RLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRL 250
             L DL  E  ++  ++ KL RE++E     + S    R    V ++   + + G+ G +
Sbjct: 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS-IQGVHGTV 527

Query: 251 GDLGGIDQKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYH 309
             LG + ++Y  A+  A G  LN +V E     +  I  +KR+  GR   +PL+KM+   
Sbjct: 528 AQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDER 587

Query: 310 SQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMV 369
                       +   +DL++  D K   AF +   +TLV +D+  A+R+    G YRMV
Sbjct: 588 RDL-SILSEDGVIGFAVDLVEF-DPKYEPAFKYVFGDTLVVEDIEAARRL---MGKYRMV 642

Query: 370 TLEGAIIEPS 379
           TLEG + E S
Sbjct: 643 TLEGELFEKS 652

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 77.0 bits (190), Expect = 1e-14
 Identities = 115/575 (20%), Positives = 231/575 (40%), Gaps = 64/575 (11%)

Query: 7   KYDEERTEKLTRVQLVETDLKALEP---ELRKAVNFLELE-NCVQR---KHNEIYQYERY 59
           KY E R E   +++    +L  LE    EL + +  LE +    +R      E+ + E  
Sbjct: 169 KYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELA 228

Query: 60  VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKK----GKESNVIGS 115
           + +  L E   +++++++EL    E +++ T E++  + +L+ +  +     +E   +  
Sbjct: 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK 288

Query: 116 KFRWSVFSAKTRFECDI--AKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCE 173
           +  +++ +  +R E      +  L        +   +L +LE+ L+++   L E +   E
Sbjct: 289 EL-YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347

Query: 174 ELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM------------ 221
           EL   + ++E+E+ E  A L +L     +L +Q+E L  +V++    +            
Sbjct: 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407

Query: 222 ---QTSRSNNRLIDFVMQL---KSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIV 275
              +      RL   + +L     E  +  +   L +L    ++    +     AL  + 
Sbjct: 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467

Query: 276 TETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPEN--------VPRLID 327
            E  EA +A+ AA +     +  +  L+++Q+      +  +            +  L +
Sbjct: 468 EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527

Query: 328 LIQVQDEKIRLAFYFATRETL---VAQDLNQAKRIGYS---GGGYRMVTLEGAIIEPSET 381
           LI V DE    A   A    L   V ++LN AK+           R+  L    I+ +E 
Sbjct: 528 LISV-DEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586

Query: 382 LVAQDLNQAKRIGYSGGGYRMVTLEGAI---IEP--SETLVAQDLNQAKRI-GYSGGGYR 435
                       G+ G    +V  +  +   +       LV  DL+ A  +      GYR
Sbjct: 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYR 646

Query: 436 MVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEVK-----------EKR 484
           +VTL+G ++ P G ++GG +     ++ R+  +      +++LE K            K 
Sbjct: 647 IVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE 706

Query: 485 LASLETELRILSQQKMEVETQLNCTGNELKYKKQE 519
           L  LE EL  L ++  E+  Q++    +L   + E
Sbjct: 707 LEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 9/286 (3%)

Query: 10  EERTEKLTRVQL----VETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNL 65
           E   E L R++     +E  L+ LE +  KA  + EL+  ++     +   +     K L
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKEL 241

Query: 66  GEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAK 125
            E E ++ ++E+EL    E +++   E+E  KSEL+ + ++ +E      + +      +
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE--IEE 299

Query: 126 TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185
              E  + +  LE   +   +  ++L +L+  +E ++  L ER+TL EEL   +  +E  
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Query: 186 IAESRARLADLTREEAKLLDQV-EKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVS 244
             E   +L+ L  E  +L + + E+LA   +E  E         R I+ + +        
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS-E 418

Query: 245 GILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVK 290
            +     +L  ++ + +  + T    LN  + E  E  E +   +K
Sbjct: 419 RLEDLKEELKELEAELE-ELQTELEELNEELEELEEQLEELRDRLK 463

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 415 TLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTD-- 471
           TLV  DL QA+R+       YR+VTL+G ++EPSG+++GG  N    L  ++     +  
Sbjct: 616 TLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEE 675

Query: 472 -TSLVKDLEVKEKRLASLETELRILSQQKMEVETQL 506
              L   LE  E+ L SL+ ELR L     E+  QL
Sbjct: 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL 711

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 415 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSL 474
           TLV +D+  A+R+    G YRMVTLEG + E SG M+ GGS   RG +          S 
Sbjct: 623 TLVVEDIEAARRLM---GKYRMVTLEGELFEKSGAMT-GGSRAPRGGILFSR------SE 672

Query: 475 VKDLEVKEKRLASLETELRILSQQKMEVETQLN 507
             +L+   +RL  L+ EL  L  +   +E +L+
Sbjct: 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLD 705

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 53/233 (22%), Positives = 112/233 (48%), Gaps = 10/233 (4%)

Query: 2   EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL-ELENCVQRKHNEIYQYERYV 60
           E L  +   +  E   +++ ++ +L ALE EL +  + L ELE  ++    E+ + +  +
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 61  NMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWS 120
                 E E +++ +E+ L    E I++  ++ ++ + EL+ +E++ +E+          
Sbjct: 761 E-----ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERE 815

Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETK-KLADLEANLEKVQTTLTERKTLCEELTTRV 179
           + S + R E    + E+E  L  + +E + KL +LE  LE+++  L E K   EEL    
Sbjct: 816 LESLEQRRE--RLEQEIE-ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK 872

Query: 180 PAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLID 232
             +E E+ E      +L  E  +L  ++ +L  E+ + RE ++   +    ++
Sbjct: 873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 43/226 (19%), Positives = 96/226 (42%), Gaps = 19/226 (8%)

Query: 8   YDEERTEKLTRVQLVETDLKALE---PELRKAVNFLELENCVQRKHNEIYQYERYVNMKN 64
            +EE  E    ++ ++  L+ LE     L +A+  L+ E        E  + +R    + 
Sbjct: 742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI-------EELEEKRQALQEE 794

Query: 65  LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSA 124
           L E E ++++ E+ L A    ++      E  + E++ +E++ +E  +            
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE--LEEKL-------D 845

Query: 125 KTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMES 184
           +   E +  + ELE       +   +  +LE  L++++    E +    EL + +  ++ 
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Query: 185 EIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRL 230
           EI + R RL +L  +  +L  ++ +L  E+ E+ E    +     +
Sbjct: 906 EIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 33/221 (14%)

Query: 10  EERTEKLTRVQLVE----TDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNL 65
           EE  E + R+ L+       L+ L  E  KA  +  L         E  +YE Y  +K  
Sbjct: 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLK-------EKREYEGYELLKEK 232

Query: 66  GEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAK 125
              E + + +E++L +  E ++K T+E+   +  L+ +E+  +E N              
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN-------------- 278

Query: 126 TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE 185
            + +      E E     Q +  +K+ +LEA +  ++ ++ E++   E+   R+  +E+E
Sbjct: 279 KKIK---DLGEEE-----QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

Query: 186 IAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRS 226
           I +  A + +L RE  +   + +KL  E +E +E ++  R+
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 8/221 (3%)

Query: 10  EERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNM--KNLGE 67
           EE  EK+  ++    +L+    ELRK     ELE  +++   E+ +  R ++   K+L  
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKE--LEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 68  HETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTR 127
            E +V+Q+E+ +    + + +   E+E  +  L+  E++  E+     +    +   + +
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI--EQLK 795

Query: 128 FECDIAKSELEIFLSTQSKETK-KLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
            E    +  L+  L  +      + A+L   LE ++  +   +   E+L  ++  +  +I
Sbjct: 796 EELKALREALDE-LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 187 AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSN 227
               A + +L     +L  ++E L  E +   E++   RS 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 29/166 (17%)

Query: 59  YVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFR 118
           Y   K + E   K+++ E+E    LE  KK   E E+ K E   +E K +          
Sbjct: 22  YFVRKKIAE--AKIKEAEEEAKRILEEAKK---EAEAIKKE-ALLEAKEE---------- 65

Query: 119 WSVFSAKTRFECDIAKSELEIFL---------STQSKETKKLADLEANLEKVQTTLTERK 169
             +   +  FE ++ +   E+               ++ + L   E  LEK +  L +++
Sbjct: 66  --IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123

Query: 170 TLCEELTTRVPAMESEIAESRARLADLTREEAK--LLDQVEKLARE 213
              E+    +  +  E  +   R++ LT EEAK  LL++VE+ AR 
Sbjct: 124 QELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 76  EQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKTRFECDIAKS 135
            Q L   LE +K+   E+ S +SEL+ +E +  E          S  S K        + 
Sbjct: 676 LQRLRERLEGLKR---ELSSLQSELRRIENRLDEL-----SQELSDASRKIG----EIEK 723

Query: 136 ELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLAD 195
           E+E     + K  ++L +LE +L  ++  +   K+  +EL  R+  +E ++ +    L D
Sbjct: 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND 783

Query: 196 LTREEA-KLLDQVEKLAREVSEKR 218
           L    +   + +++    ++ E+ 
Sbjct: 784 LEARLSHSRIPEIQAELSKLEEEV 807

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	531
KOG0996|consensus	1293		100.0
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	100.0
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	100.0
KOG0964|consensus	1200		100.0
KOG0018|consensus	1141		100.0
KOG0933|consensus	1174		99.97
KOG0250|consensus	1074		99.94
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.9
PF06470	120	SMC_hinge: SMC proteins Flexible Hinge Domain; Int	99.82
KOG0979|consensus	1072		99.74
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.7
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.69
KOG0964|consensus	1200		99.68
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.66
KOG0018|consensus	1141		99.53
KOG0996|consensus	1293		99.44
KOG0250|consensus	1074		99.42
KOG0933|consensus	1174		99.32
PRK04863	1486	mukB cell division protein MukB; Provisional	99.14
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.7
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.58
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.54
PRK04863	1486	mukB cell division protein MukB; Provisional	98.39
PRK02224	880	chromosome segregation protein; Provisional	98.3
PRK02224	880	chromosome segregation protein; Provisional	98.27
KOG0161|consensus	1930		98.15
KOG0161|consensus	1930		98.12
PRK03918	880	chromosome segregation protein; Provisional	98.11
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.09
PRK11637	428	AmiB activator; Provisional	98.07
PF06470	120	SMC_hinge: SMC proteins Flexible Hinge Domain; Int	98.06
KOG0979|consensus	1072		98.05
PHA02562	562	46 endonuclease subunit; Provisional	98.0
PRK04778	569	septation ring formation regulator EzrA; Provision	98.0
PRK03918	880	chromosome segregation protein; Provisional	97.99
PHA02562	562	46 endonuclease subunit; Provisional	97.97
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.94
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.91
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.85
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.83
PRK11637	428	AmiB activator; Provisional	97.81
KOG0977|consensus	546		97.77
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.75
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.72
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.68
KOG1029|consensus	1118		97.62
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.61
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.6
KOG0994|consensus	1758		97.57
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.54
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.5
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.49
PRK04778	569	septation ring formation regulator EzrA; Provision	97.48
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.44
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.44
KOG0971|consensus	1243		97.42
PRK01156	895	chromosome segregation protein; Provisional	97.41
KOG0971|consensus	1243		97.39
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.34
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.29
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.29
KOG4674|consensus	1822		97.27
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.25
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.24
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.24
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.22
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.16
COG4477	570	EzrA Negative regulator of septation ring formatio	97.14
KOG0977|consensus	546		96.97
KOG0980|consensus	980		96.95
KOG0995|consensus	581		96.81
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.77
KOG4643|consensus	1195		96.73
KOG0612|consensus	1317		96.73
KOG0980|consensus	980		96.72
PRK09039	343	hypothetical protein; Validated	96.66
KOG0994|consensus	1758		96.62
COG4372	499	Uncharacterized protein conserved in bacteria with	96.6
COG4372	499	Uncharacterized protein conserved in bacteria with	96.56
KOG0976|consensus	1265		96.43
KOG0946|consensus	970		96.39
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.37
KOG0995|consensus	581		96.29
KOG1003|consensus	205		96.29
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.28
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.24
KOG4674|consensus	1822		96.22
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.21
KOG1003|consensus	205		95.97
KOG0612|consensus	1317		95.92
KOG0978|consensus	698		95.9
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.86
KOG4673|consensus	961		95.81
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.8
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	95.77
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.7
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.62
KOG4643|consensus	1195		95.56
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.53
KOG0946|consensus	970		95.52
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.38
KOG4673|consensus	961		95.17
KOG4360|consensus	596		95.0
KOG0999|consensus	772		94.91
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.85
COG4477	570	EzrA Negative regulator of septation ring formatio	94.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.61
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.61
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.56
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.55
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.4
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.39
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.24
KOG0962|consensus	1294		94.22
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.06
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.01
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.83
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	93.77
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.63
KOG0243|consensus	1041		93.56
KOG0249|consensus	916		93.51
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.41
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.23
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.15
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.1
PRK11281	1113	hypothetical protein; Provisional	92.81
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.77
KOG0978|consensus	698		92.73
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.62
PRK11281	1113	hypothetical protein; Provisional	92.51
KOG4360|consensus	596		91.86
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.8
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.42
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.41
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	91.36
PRK10869	553	recombination and repair protein; Provisional	91.33
PF13514	1111	AAA_27: AAA domain	91.18
COG2433	652	Uncharacterized conserved protein [Function unknow	91.18
PRK10884	206	SH3 domain-containing protein; Provisional	90.87
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.69
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.66
PRK10884	206	SH3 domain-containing protein; Provisional	90.54
KOG1937|consensus	521		90.3
KOG0999|consensus	772		90.28
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.18
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.09
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.74
KOG0962|consensus	1294		88.96
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	88.94
PRK12704	520	phosphodiesterase; Provisional	88.85
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	88.54
KOG2751|consensus	447		88.4
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.37
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.11
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	87.89
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	87.88
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.75
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	87.73
KOG0249|consensus	916		87.65
KOG0288|consensus	459		87.59
COG2433	652	Uncharacterized conserved protein [Function unknow	87.56
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	86.98
PF11802	268	CENP-K: Centromere-associated protein K; InterPro:	86.82
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.77
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	86.7
PRK10869	553	recombination and repair protein; Provisional	86.65
PF13514	1111	AAA_27: AAA domain	86.34
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	86.31
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	86.27
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.24
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	86.18
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	86.06
KOG0804|consensus	493		85.9
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	85.82
KOG1899|consensus	861		85.66
PRK03947	140	prefoldin subunit alpha; Reviewed	85.51
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	85.5
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	85.34
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	85.06
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	84.92
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	84.88
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	83.38
KOG0804|consensus	493		83.26
KOG1853|consensus	333		82.26
KOG2991|consensus	330		81.76
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	81.62
KOG4302|consensus	660		81.45
COG3096	1480	MukB Uncharacterized protein involved in chromosom	80.79
PRK12704	520	phosphodiesterase; Provisional	80.73
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	80.65
KOG4809|consensus	654		80.5
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	80.22

>KOG0996|consensus

Probab=100.00  E-value=9.4e-43  Score=361.11  Aligned_cols=448  Identities=38%  Similarity=0.591  Sum_probs=346.2

Q ss_pred             hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy14063          3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTAN   82 (531)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (531)
                      ..++.|++.+.++.++++.++++...||..++.+.+|+.+++++..+++.+++..+++...++......+..+++.+...
T Consensus       274 ~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~  353 (1293)
T KOG0996|consen  274 RRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDE  353 (1293)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            35788999999999999999999999999999999999999999999999999998888888888777777777666554


Q ss_pred             HHHHH---------------------------------------------------------HhHHHHHHHHH-------
Q psy14063         83 LESIK---------------------------------------------------------KCTDEMESAKS-------   98 (531)
Q Consensus        83 ~~~~~---------------------------------------------------------~~~~~~~~~~~-------   98 (531)
                      ...+.                                                         .+.++++....       
T Consensus       354 ~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~  433 (1293)
T KOG0996|consen  354 NEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEK  433 (1293)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            33111                                                         00111111110       


Q ss_pred             --------------HHHHH---------------------------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHH
Q psy14063         99 --------------ELKTV---------------------------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSEL  137 (531)
Q Consensus        99 --------------~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  137 (531)
                                    ++..+                           ++...+.++.+  +..++.++  +.+++.+++++
T Consensus       434 ~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~--~~~~~n~~--~~e~~vaesel  509 (1293)
T KOG0996|consen  434 APEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMP--LLKQVNEA--RSELDVAESEL  509 (1293)
T ss_pred             CchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHH
Confidence                          11111                           33455556666  66666666  77777777777


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        138 EIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK  217 (531)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~  217 (531)
                      +.+.........+...++..+......+.+....+..+...+..+..++.+....+..+......+...+..+.+++.++
T Consensus       510 ~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~  589 (1293)
T KOG0996|consen  510 DILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA  589 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777788888888888888888888888888888888888888888888888888888888888999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhccCCcEEecchHHHHHHHHHHHHcCCCce
Q psy14063        218 RESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRV  297 (531)
Q Consensus       218 ~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg~l~~ivv~~~~~a~~~i~~Lk~~~~gr~  297 (531)
                      ++.++...++..++++|++.+..+.++|++|+||||..||++|..||.+||+.|++|||++.++|..||+||+.+++||+
T Consensus       590 ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgra  669 (1293)
T KOG0996|consen  590 KSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRA  669 (1293)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCce
Confidence            98888888889999999988777789999999999999999999999998889999999999999999999999999999


Q ss_pred             eEEeCcCCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceec
Q psy14063        298 NVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIE  377 (531)
Q Consensus       298 tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~  377 (531)
                      ||++||.+........ +...|-.+++++|+|.|.||.++++|+++|++++||++++.|.++++..+             
T Consensus       670 TFi~LDki~~~~~~l~-~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~-------------  735 (1293)
T KOG0996|consen  670 TFIILDKIKDHQKKLA-PITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKD-------------  735 (1293)
T ss_pred             eEEehHhhhhhhhccC-CCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCC-------------
Confidence            9999999874321111 23445578899999999889999999999999999999999999887532             


Q ss_pred             CCCceecccccccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccc
Q psy14063        378 PSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNP  457 (531)
Q Consensus       378 ~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~  457 (531)
                                                                            -++++||++|.+|+++|+|+||+...
T Consensus       736 ------------------------------------------------------rr~RVvTL~G~lIe~SGtmtGGG~~v  761 (1293)
T KOG0996|consen  736 ------------------------------------------------------RRWRVVTLDGSLIEKSGTMTGGGKKV  761 (1293)
T ss_pred             ------------------------------------------------------CceEEEEecceeecccccccCCCCcC
Confidence                                                                  24889999999999999999988666


Q ss_pred             cccccccccccc-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy14063        458 IRGLMGRKATVS-TDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLI  525 (531)
Q Consensus       458 ~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  525 (531)
                      .+|.++..  .. +..+ ......+++++.........+..+..+++.+...+...+..++..++.+..
T Consensus       762 ~~g~mg~~--~~~t~~s-~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~  827 (1293)
T KOG0996|consen  762 KGGRMGTS--IRVTGVS-KESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTA  827 (1293)
T ss_pred             CCCCCCCc--cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHH
Confidence            66655544  21 1111 345566666666665555555555555555555555555554444444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=100.00  E-value=4.4e-35  Score=331.37  Aligned_cols=381  Identities=24%  Similarity=0.355  Sum_probs=232.5

Q ss_pred             hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063          5 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE   84 (531)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (531)
                      ++...+.+......+..++.+++.|+.+++.+.+|..++.++..++..++|.++.....++..+...+..++..+..+..
T Consensus       181 L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  260 (1163)
T COG1196         181 LERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQE  260 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555799999999999999999999999999999999999999998888888888888777777666


Q ss_pred             HHHHhHHHHHHHHHHHHHH-------------------------------------HHh-------chhhccccc-----
Q psy14063         85 SIKKCTDEMESAKSELKTV-------------------------------------EKK-------GKESNVIGS-----  115 (531)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~-------------------------------------~~~-------~~~~~l~~~-----  115 (531)
                      .+......+..++.++..+                                     ...       ..+..+...     
T Consensus       261 ~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (1163)
T COG1196         261 ELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE  340 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433333322211111                                     000       000000000     


Q ss_pred             c----------hHHHHHhH-----H--------hHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        116 K----------FRWSVFSA-----K--------TRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLC  172 (531)
Q Consensus       116 ~----------~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l  172 (531)
                      .          ....+...     .        .......+++++..+.........++..++.++..++..+..+...+
T Consensus       341 ~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~  420 (1163)
T COG1196         341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL  420 (1163)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0          00000000     0        00111111222222222222223333333333333333333333222


Q ss_pred             HHHhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----
Q psy14063        173 EELTTRVPAMESEIA--------------ESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDF-----  233 (531)
Q Consensus       173 ~~l~~~~~~~~~~l~--------------~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~-----  233 (531)
                      ..+..++..+..++.              .+...++.+...+..+...+..++..+..+...+.....+...+..     
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  500 (1163)
T COG1196         421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS  500 (1163)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            222222222222222              2222222222222222222222222233333322222222222211     


Q ss_pred             -----HHHHHhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCc
Q psy14063        234 -----VMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQ  307 (531)
Q Consensus       234 -----l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~  307 (531)
                           ++..... .++|++|+|+++++|+++|..||++++| .+++|||++..+|..||++|+.++.||+||+|++.+++
T Consensus       501 ~~~~~~~~~~~~-~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~  579 (1163)
T COG1196         501 QGVRAVLEALES-GLPGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKP  579 (1163)
T ss_pred             hhHHHHHHHHhc-cCCCccchHHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcc
Confidence                 1211122 2799999999999999999999999999 99999999999999999999999999999999999986


Q ss_pred             ccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceecCCCceecccc
Q psy14063        308 YHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDL  387 (531)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~~~~~~~~~~~  387 (531)
                      .....+ . ..+|++++++|+|+| ||.|++++.++||+++||++++.|..+.+...                       
T Consensus       580 ~~~~~~-~-~~~g~~~~a~dli~~-d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~-----------------------  633 (1163)
T COG1196         580 LRSLKS-D-AAPGFLGLASDLIDF-DPKYEPAVRFVLGDTLVVDDLEQARRLARKLR-----------------------  633 (1163)
T ss_pred             cccccc-c-cccchhHHHHHHhcC-CHHHHHHHHHHhCCeEEecCHHHHHHHHHhcC-----------------------
Confidence            532111 1 157889999999999 78999999999999999999999998876531                       


Q ss_pred             cccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063        388 NQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN  456 (531)
Q Consensus       388 ~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~  456 (531)
                                                                  +++++||++|+++.++|+|+||+..
T Consensus       634 --------------------------------------------~~~riVTl~G~~~~~~G~~tGG~~~  658 (1163)
T COG1196         634 --------------------------------------------IKYRIVTLDGDLVEPSGSITGGSRN  658 (1163)
T ss_pred             --------------------------------------------CCceEEecCCcEEeCCeeeecCCcc
Confidence                                                        5788999999999999999999543

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=100.00  E-value=4.7e-32  Score=313.59  Aligned_cols=116  Identities=28%  Similarity=0.520  Sum_probs=100.3

Q ss_pred             CCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCcc
Q psy14063        243 VSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPEN  321 (531)
Q Consensus       243 ~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~  321 (531)
                      ++|++|+|+++|+|+++|+.||++++| .+++|||++..+|..||.||+.+++||+||+||+.+++...+. ..+..+|+
T Consensus       520 ~~g~~g~l~dli~v~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~-~~~~~~~~  598 (1164)
T TIGR02169       520 IQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDL-SILSEDGV  598 (1164)
T ss_pred             CCCceecHHHhcCcCHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCc-ccccCCCc
Confidence            589999999999999999999999999 9999999999999999999999999999999999886421111 11122456


Q ss_pred             ccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHH
Q psy14063        322 VPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG  360 (531)
Q Consensus       322 ~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~  360 (531)
                      ++++.|+|.| ++.|.+++.++||+++||++++.|..++
T Consensus       599 ~~~~~~~i~~-~~~~~~~~~~~lg~~~v~~~l~~a~~~~  636 (1164)
T TIGR02169       599 IGFAVDLVEF-DPKYEPAFKYVFGDTLVVEDIEAARRLM  636 (1164)
T ss_pred             hHHHHHHccC-cHHHHHHHHHHCCCeEEEcCHHHHHHHh
Confidence            7778899999 7899999999999999999999998764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0964|consensus

Probab=100.00  E-value=9.2e-32  Score=274.03  Aligned_cols=244  Identities=21%  Similarity=0.366  Sum_probs=191.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        140 FLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRE  219 (531)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~  219 (531)
                      ++.++..++..+....++++.+...+.+...++.++......+..++.++......++.+...++..+..+...+...+.
T Consensus       416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~  495 (1200)
T KOG0964|consen  416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK  495 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444555555555555556666666777777788888888888888999999999999999988888


Q ss_pred             HHHhhhhh--HHHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCc
Q psy14063        220 SMQTSRSN--NRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGR  296 (531)
Q Consensus       220 ~~~~~~~~--~~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr  296 (531)
                      .+.....+  ...+..+.+.....+..|++|||++++.||+.|-+|||+..| +|+++||++.++|..++..|..-+.||
T Consensus       496 ~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~Gr  575 (1200)
T KOG0964|consen  496 NLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGR  575 (1200)
T ss_pred             HHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCe
Confidence            88765443  344444444333334579999999999999999999999999 999999999999999999999988999


Q ss_pred             eeEEeCcCCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCcee
Q psy14063        297 VNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAII  376 (531)
Q Consensus       297 ~tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~  376 (531)
                      +||+||+.++++...+    +..+.+.|+++.+.| +|.|.+++.++||+++||.|++.|...++.              
T Consensus       576 VTF~PLNrl~~r~v~y----p~~sdaiPli~kl~y-~p~fdka~k~Vfgktivcrdl~qa~~~ak~--------------  636 (1200)
T KOG0964|consen  576 VTFMPLNRLKARDVEY----PKDSDAIPLISKLRY-EPQFDKALKHVFGKTIVCRDLEQALRLAKK--------------  636 (1200)
T ss_pred             eEEeecccCchhhccC----CCCCCccchHHHhCc-chhhHHHHHHHhCceEEeccHHHHHHHHHh--------------
Confidence            9999999998743222    222344678999999 799999999999999999999999988765              


Q ss_pred             cCCCceecccccccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063        377 EPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN  456 (531)
Q Consensus       377 ~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~  456 (531)
                                                                             +.+.+||++|+.++..|.|+||+..
T Consensus       637 -------------------------------------------------------~~ln~ITl~GDqvskkG~lTgGy~D  661 (1200)
T KOG0964|consen  637 -------------------------------------------------------HELNCITLSGDQVSKKGVLTGGYED  661 (1200)
T ss_pred             -------------------------------------------------------cCCCeEEeccceecccCCccccchh
Confidence                                                                   3467889999999999999999954


Q ss_pred             c
Q psy14063        457 P  457 (531)
Q Consensus       457 ~  457 (531)
                      .
T Consensus       662 ~  662 (1200)
T KOG0964|consen  662 Q  662 (1200)
T ss_pred             h
Confidence            3

>KOG0018|consensus

Probab=100.00  E-value=1.9e-29  Score=260.95  Aligned_cols=213  Identities=24%  Similarity=0.404  Sum_probs=153.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCcccccc
Q psy14063        172 CEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLG  251 (531)
Q Consensus       172 l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g~l~  251 (531)
                      +..+......+...+..+.........+...++.++.....++.++........++......+...+  .+|||++|+|.
T Consensus       432 i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lK--r~fPgv~Grvi  509 (1141)
T KOG0018|consen  432 ITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALK--RLFPGVYGRVI  509 (1141)
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHH--HhCCCccchhh
Confidence            3333333333333333333333344444444444444444444444333332222222222222222  36899999999


Q ss_pred             cccccC-cchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCccccccccce
Q psy14063        252 DLGGID-QKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLI  329 (531)
Q Consensus       252 ~li~v~-~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i  329 (531)
                      |+|+.. .+|..|+.++|| .+++|||++..+|..||.||+.+++|..||+|||.+...+.  ...++.++++..++|+|
T Consensus       510 DLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~--~e~lr~~~g~rlv~Dvi  587 (1141)
T KOG0018|consen  510 DLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPV--NEKLRELGGVRLVIDVI  587 (1141)
T ss_pred             hcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCcc--cccccCcCCeEEEEEec
Confidence            999985 789999999999 99999999999999999999999999999999999875432  12355677888999999


Q ss_pred             ecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceecCCCceecccccccccccccCCccccccccccc
Q psy14063        330 QVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAI  409 (531)
Q Consensus       330 ~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~  409 (531)
                      +| +|+|+.++.|++|+++||++++.|+.+++..+                                             
T Consensus       588 ~y-e~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~---------------------------------------------  621 (1141)
T KOG0018|consen  588 NY-EPEYEKAVQFACGNALVCDSVEDARDLAYGGE---------------------------------------------  621 (1141)
T ss_pred             CC-CHHHHHHHHHHhccceecCCHHHHHHhhhccc---------------------------------------------
Confidence            99 68999999999999999999999998876521                                             


Q ss_pred             cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063        410 IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN  456 (531)
Q Consensus       410 ~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~  456 (531)
                                            .++++||+||.+++.+|.|+||+..
T Consensus       622 ----------------------~r~k~valdGtl~~ksGlmsGG~s~  646 (1141)
T KOG0018|consen  622 ----------------------IRFKVVALDGTLIHKSGLMSGGSSG  646 (1141)
T ss_pred             ----------------------ccceEEEeeeeEEeccceecCCccC
Confidence                                  3578999999999999999999865

>KOG0933|consensus

Probab=99.97  E-value=4.1e-27  Score=241.44  Aligned_cols=362  Identities=22%  Similarity=0.330  Sum_probs=211.6

Q ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-
Q psy14063         25 DLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV-  103 (531)
Q Consensus        25 ~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-  103 (531)
                      .+..|..+...+.+|......+..+...+..++|.............+...+..+..+.+.......+++.++.++.++ 
T Consensus       206 ~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~  285 (1174)
T KOG0933|consen  206 RLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIE  285 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3455677777778888888999999999999999999999998888888888888888887777777777776666555 


Q ss_pred             ---------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---------
Q psy14063        104 ---------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTL---------  165 (531)
Q Consensus       104 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l---------  165 (531)
                               ....++..+..  ++......  ...+......+...+...+.+...|...+..+...+...         
T Consensus       286 ~~rd~em~~~~~~L~~~~~~--~~~~~tr~--~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~  361 (1174)
T KOG0933|consen  286 QQRDAEMGGEVKALEDKLDS--LQNEITRE--ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEK  361 (1174)
T ss_pred             HHHHHHhchhhhhHHHHHHH--HHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence                     12222222222  22222222  222222222222222222222222211111111111111         


Q ss_pred             -----------------------------------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy14063        166 -----------------------------------------------TERKTLCEELTTRVPAMESEIAESRARLADLTR  198 (531)
Q Consensus       166 -----------------------------------------------~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~  198 (531)
                                                                     .....++....-+++.+..++...+.+......
T Consensus       362 ~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~  441 (1174)
T KOG0933|consen  362 LKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASA  441 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhH
Confidence                                                           111111111112222222222222222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHH-------HH---HHHHHH--------H-hhcCCC--Cc
Q psy14063        199 EEAKLLDQVEKLAREVSEKRESMQTSRS-----------NNR-------LI---DFVMQL--------K-SENRVS--GI  246 (531)
Q Consensus       199 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~-----------~~~-------~l---~~l~~~--------~-~~~~~~--gv  246 (531)
                      +.......+..++..+..++.++..+..           +..       +.   +.+...        . ..+.|.  .|
T Consensus       442 ~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V  521 (1174)
T KOG0933|consen  442 EYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKV  521 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHH
Confidence            2222222333333333333333332211           000       00   111100        0 001232  28


Q ss_pred             cccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCccccccc--C--cCCCCc
Q psy14063        247 LGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCY--D--KYRTPE  320 (531)
Q Consensus       247 ~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~--~--~~~~~~  320 (531)
                      .|.|+.+|.| |..|.+|+++++| .++++||++..++..+++-  .+--.|+|+|||+.|..+..++.  .  ....++
T Consensus       522 ~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~--g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~  599 (1174)
T KOG0933|consen  522 KGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQR--GNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGND  599 (1174)
T ss_pred             HHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhc--ccccceeEEEechhhhhccCCHhHHHHHHHhcCc
Confidence            8999999999 6679999999999 9999999999999987751  11235899999999876432211  0  112345


Q ss_pred             cccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCCCccEEccCCceecCCCceecccccccccccccCCcc
Q psy14063        321 NVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGY  400 (531)
Q Consensus       321 ~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~  400 (531)
                      .+..+.++|.| |+.+.+++.|+||+++||++++.|..+++...                                    
T Consensus       600 ~v~~al~Li~y-d~~l~~amefvFG~tlVc~~~d~AKkVaf~~~------------------------------------  642 (1174)
T KOG0933|consen  600 NVELALSLIGY-DDELKKAMEFVFGSTLVCDSLDVAKKVAFDPK------------------------------------  642 (1174)
T ss_pred             hHHHHHHHhcC-CHHHHHHHHHHhCceEEecCHHHHHHhhcccc------------------------------------
Confidence            66788999999 79999999999999999999999998876421                                    


Q ss_pred             ccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcccccc
Q psy14063        401 RMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRG  460 (531)
Q Consensus       401 ~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~  460 (531)
                                                     .+.+.||++||+++|+|+++||+...+++
T Consensus       643 -------------------------------i~~rsVTl~GDV~dP~GtlTGGs~~~~a~  671 (1174)
T KOG0933|consen  643 -------------------------------IRTRSVTLEGDVYDPSGTLTGGSRSKGAD  671 (1174)
T ss_pred             -------------------------------cccceeeecCceeCCCCcccCCCCCCccc
Confidence                                           35677999999999999999999665544

>KOG0250|consensus

Probab=99.94  E-value=2.9e-22  Score=209.97  Aligned_cols=361  Identities=15%  Similarity=0.241  Sum_probs=204.8

Q ss_pred             hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063          5 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE   84 (531)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (531)
                      ++...+.+....+.+..+++++...+...........+.+.+..++..++|+.|++.+.++......+...++++..+.+
T Consensus       223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~  302 (1074)
T KOG0250|consen  223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQE  302 (1074)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555666666666666666666666666678899999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy14063         85 SIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQ  162 (531)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e  162 (531)
                      +++....++..++.++.+.  .+..+..+...  ...++..+  +..+..+..+...++....+..+.+...+.....++
T Consensus       303 ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~--~d~Ei~~~--r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~  378 (1074)
T KOG0250|consen  303 KIEEKQGKIEEARQKLTEIEAKIGELKDEVDA--QDEEIEEA--RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE  378 (1074)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh--hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777777554433  22222222222  22233333  333333333333333333333333333333333333


Q ss_pred             HHHHHH---------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy14063        163 TTLTER---------------KTLCEELTTRVPAMESEIAESRARLADLTREEAK-------LLDQVEKLAREVSEKRES  220 (531)
Q Consensus       163 ~~l~~~---------------~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~-------~~~~l~~l~~~l~~~~~~  220 (531)
                      ..|...               +.+++.+..+++.++..+..+..+.+.+...+..       .+..+.++...++.....
T Consensus       379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~  458 (1074)
T KOG0250|consen  379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE  458 (1074)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322               2233333333333333333333333333222222       222222222222222222


Q ss_pred             HHhhh------------hhHHHHHHHHHHHhhcCCCC-ccccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHH
Q psy14063        221 MQTSR------------SNNRLIDFVMQLKSENRVSG-ILGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAV  285 (531)
Q Consensus       221 ~~~~~------------~~~~~l~~l~~~~~~~~~~g-v~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~  285 (531)
                      +..+.            ....+|..|-+...  .|.+ +.||+|.++++ +|+|+.|||.+|| .+++|+|.+..|+..+
T Consensus       459 l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~--~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~L  536 (1074)
T KOG0250|consen  459 LKDLKKTKTDKVSAFGPNMPQLLRAIERRKR--RFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARIL  536 (1074)
T ss_pred             HHHHHhcccchhhhcchhhHHHHHHHHHHHh--cCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHH
Confidence            22221            22445555544322  2433 88999999997 8899999999999 8999999999999988


Q ss_pred             HHHHHHcCCC--ceeEEeCcCCCcccccccCcCCCCcc-ccccccceecCchHHHHHHHHhh--CCeEEEcCHHHHHHHH
Q psy14063        286 IAAVKRQNVG--RVNVIPLDKMQQYHSQCYDKYRTPEN-VPRLIDLIQVQDEKIRLAFYFAT--RETLVAQDLNQAKRIG  360 (531)
Q Consensus       286 i~~Lk~~~~g--r~tflpl~~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~~~~~~~ll--g~~~v~~~l~~A~~~~  360 (531)
                      -+.++..+.+  +.|++.- ...+.  .++ ....|+. ++++.+++.+++|.+..++--..  ..+++++|-.+|..+.
T Consensus       537 r~i~~~~~~~~~~ptIvvs-~~~~~--~y~-~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m  612 (1074)
T KOG0250|consen  537 RAIMRRLKIPGNRPTIVVS-SFTPF--DYS-VGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFM  612 (1074)
T ss_pred             HHHHHHcCCCCCCCcEEEe-cCCcc--ccc-cccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHH
Confidence            8888887665  3444321 11111  111 1122333 57888999997653332222222  3589999988888777


Q ss_pred             hhC--C--CccEEccCCce
Q psy14063        361 YSG--G--GYRMVTLEGAI  375 (531)
Q Consensus       361 ~~~--~--~~~~vt~~G~~  375 (531)
                      ...  |  -..+.|+||..
T Consensus       613 ~s~~~p~n~~~aytldg~~  631 (1074)
T KOG0250|consen  613 QSDKPPANVTKAYTLDGRQ  631 (1074)
T ss_pred             hcCCCCccceeeeccCccc
Confidence            542  2  12345555554

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.90  E-value=1.8e-19  Score=209.41  Aligned_cols=119  Identities=31%  Similarity=0.469  Sum_probs=95.2

Q ss_pred             CCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCccccc--ccC-cCCC
Q psy14063        243 VSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQ--CYD-KYRT  318 (531)
Q Consensus       243 ~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~--~~~-~~~~  318 (531)
                      ++|++|.+.+++.+++.|..|++.++| .+.++||++..+|..++.+++....|+++|+|++.+......  ... ....
T Consensus       518 ~~~~~g~~~~li~~~~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~  597 (1179)
T TIGR02168       518 LSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI  597 (1179)
T ss_pred             cCCCccchhceeeeChhHHHHHHHHHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhcccc
Confidence            467889999999999999999999999 888899999999999999999988999999999887542101  000 1122


Q ss_pred             CccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063        319 PENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS  362 (531)
Q Consensus       319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~  362 (531)
                      .|++..+.|++.| ++.+..++.+.+|++.+|.+++.|..+.+.
T Consensus       598 ~~~~~~~~dl~~~-~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~  640 (1179)
T TIGR02168       598 EGFLGVAKDLVKF-DPKLRKALSYLLGGVLVVDDLDNALELAKK  640 (1179)
T ss_pred             CchhHHHHHHhcc-cHhHHHHHHHHhCCceEeCCHHHHHHHHHH
Confidence            3556677788888 688888888889998899999999887654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins

Probab=99.82  E-value=1.4e-19  Score=151.73  Aligned_cols=117  Identities=38%  Similarity=0.612  Sum_probs=101.2

Q ss_pred             CCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccC-cCCCCcc
Q psy14063        244 SGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYD-KYRTPEN  321 (531)
Q Consensus       244 ~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~-~~~~~~~  321 (531)
                      +|++|+|+++++|+++|+.||+++|| .++++||++.++|..+++++++++.|+++|+|++.+.+....... ....+++
T Consensus         2 ~gv~G~l~dli~v~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~~   81 (120)
T PF06470_consen    2 PGVLGRLADLIEVDPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPGG   81 (120)
T ss_dssp             TTEEEEGGGSEEESGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTTS
T ss_pred             CCeeeeHHhceecCHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCcc
Confidence            58999999999999999999999999 999999999999999999999999999999999987654311100 0012467


Q ss_pred             ccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHH
Q psy14063        322 VPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG  360 (531)
Q Consensus       322 ~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~  360 (531)
                      ..++.|+|+|+++.|++++.++||++++|+|+++|.+++
T Consensus        82 ~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la  120 (120)
T PF06470_consen   82 AGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA  120 (120)
T ss_dssp             EEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred             hHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence            789999999977899999999999999999999998763

The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.

>KOG0979|consensus

Probab=99.74  E-value=1.1e-14  Score=151.74  Aligned_cols=331  Identities=13%  Similarity=0.112  Sum_probs=215.6

Q ss_pred             hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063          4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANL   83 (531)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (531)
                      .-.+|...+..+.+.++.++.+...|+++++.+.++..+...+..+..+++|..|.....++..++...+.+...++.+.
T Consensus       189 ~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~  268 (1072)
T KOG0979|consen  189 DEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLE  268 (1072)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHH---------HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14063         84 ESIKKCTDEMESAKSELKTV---------EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADL  154 (531)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  154 (531)
                      +.+..+...++.++++....         .+......+..  ....+..+  ..++......++.++......+.+|..+
T Consensus       269 k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~--~~ek~~~~--~~~v~~~~~~le~lk~~~~~rq~~i~~~  344 (1072)
T KOG0979|consen  269 KEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQE--KFEKLKEI--EDEVEEKKNKLESLKKAAEKRQKRIEKA  344 (1072)
T ss_pred             HhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888888888777755444         23333333333  44444555  6666666777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-
Q psy14063        155 EANLEKVQTTLTERK------TLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES-----MQ-  222 (531)
Q Consensus       155 ~~~i~~~e~~l~~~~------~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~-----~~-  222 (531)
                      +..|...+..+.+..      .+..++..+..+.......-..+....+.........+.+....+......     .. 
T Consensus       345 ~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~~~~~~~~~~k~~~~  424 (1072)
T KOG0979|consen  345 KKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRKLKQNSDLNRQKRYRV  424 (1072)
T ss_pred             HHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            777777777776542      333333333222222211111111122222222222222222222111111     11 


Q ss_pred             ---hhhhhHHHHHHHHHHHhhcCCCC-ccccccccccc-CcchHHHHHHHhc--cCCcEEecchHHHHHHHHHHHHcCCC
Q psy14063        223 ---TSRSNNRLIDFVMQLKSENRVSG-ILGRLGDLGGI-DQKYDIAVSTACG--ALNYIVTETVEAGEAVIAAVKRQNVG  295 (531)
Q Consensus       223 ---~~~~~~~~l~~l~~~~~~~~~~g-v~g~l~~li~v-~~~y~~Aie~~lg--~l~~ivv~~~~~a~~~i~~Lk~~~~g  295 (531)
                         .....++++.|+.++.+  .|++ +|||+.--+.| +++|+.+||.++|  .+..|||.+.+|...++..++.....
T Consensus       425 l~~~~~d~~dAy~wlrenr~--~FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~  502 (1072)
T KOG0979|consen  425 LRQGSSDAYDAYQWLRENRS--EFKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWR  502 (1072)
T ss_pred             hccCchHHHHHHHHHHHCHH--HhcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHHhhhccee
Confidence               11234667788877533  4666 99996666666 8899999999999  78999999999999998888875322


Q ss_pred             ceeE--EeCcCCCccc-cc-ccCcCCCCccccccccceecCchHHHHHHHHhh
Q psy14063        296 RVNV--IPLDKMQQYH-SQ-CYDKYRTPENVPRLIDLIQVQDEKIRLAFYFAT  344 (531)
Q Consensus       296 r~tf--lpl~~~~~~~-~~-~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~ll  344 (531)
                      -.+.  +|-+..-+.. ++ +++.+...||.|.+.+++++|+    +++.+++
T Consensus       503 vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f~~~p~----~vm~~Lc  551 (1072)
T KOG0979|consen  503 VNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNFIEAPE----PVMSYLC  551 (1072)
T ss_pred             eeceeccccccccccCCCccCHHHHHhcChHHHhhhhhcCcH----HHHHHHH
Confidence            1111  1211110100 00 1112345688899999999953    4565555

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.70  E-value=4.2e-14  Score=164.36  Aligned_cols=127  Identities=27%  Similarity=0.305  Sum_probs=94.6

Q ss_pred             CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh-----CCCccEEccCCceecCCCceeccccccc
Q psy14063        319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS-----GGGYRMVTLEGAIIEPSETLVAQDLNQA  390 (531)
Q Consensus       319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~-----~~~~~~vt~~G~~~~~~~~~~~~~~~~~  390 (531)
                      +|.+|++.+++.+ ++.|..++..++|+   .+||++.++|..++..     .|+..|++++-.  .+.. +. ...  +
T Consensus       521 ~g~~g~l~dli~v-~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~--~~~~-~~-~~~--~  593 (1164)
T TIGR02169       521 QGVHGTVAQLGSV-GERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKM--RDER-RD-LSI--L  593 (1164)
T ss_pred             CCceecHHHhcCc-CHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhc--CCCC-CC-ccc--c
Confidence            5677789999999 69999999999995   6799999999776632     256777776522  1110 00 001  1


Q ss_pred             ccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCc
Q psy14063        391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGS  455 (531)
Q Consensus       391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~  455 (531)
                      ..+|.++++.++|.|++.+     +++|+++||++++.|..++.   ++++||++|++++++|+|+||+.
T Consensus       594 ~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~~~---~~~~vTldG~~~~~~G~~tgG~~  660 (1164)
T TIGR02169       594 SEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMG---KYRMVTLEGELFEKSGAMTGGSR  660 (1164)
T ss_pred             cCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHHhc---CCcEEEeCceeEcCCcCccCCCC
Confidence            1245566667788876644     78999999999999998653   67899999999999999999973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.69  E-value=3.8e-13  Score=156.72  Aligned_cols=41  Identities=32%  Similarity=0.282  Sum_probs=33.0

Q ss_pred             CccccccccceecCchHHHHHHHHhhCCe---EEEcCHHHHHHHH
Q psy14063        319 PENVPRLIDLIQVQDEKIRLAFYFATRET---LVAQDLNQAKRIG  360 (531)
Q Consensus       319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~~---~v~~~l~~A~~~~  360 (531)
                      +|++|.+.+++.+ ++.|..++.+++|+.   +||++.+.|....
T Consensus       519 ~~~~g~~~~li~~-~~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~  562 (1179)
T TIGR02168       519 SGILGVLSELISV-DEGYEAAIEAALGGRLQAVVVENLNAAKKAI  562 (1179)
T ss_pred             CCCccchhceeee-ChhHHHHHHHHHHHHhcCeEECCHHHHHHHH
Confidence            3456778899988 689999999999875   8999999876543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0964|consensus

Probab=99.68  E-value=2.2e-13  Score=140.86  Aligned_cols=126  Identities=20%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             CCccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh-----CCCccEEccCCceecCCCceecccccc
Q psy14063        318 TPENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS-----GGGYRMVTLEGAIIEPSETLVAQDLNQ  389 (531)
Q Consensus       318 ~~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~-----~~~~~~vt~~G~~~~~~~~~~~~~~~~  389 (531)
                      ..|.+|++.++++| |+.|..|++..-|+   .+||++.+.|..++..     .|++.|++++-.-. +.     ..+|.
T Consensus       521 ~ngv~G~v~eL~~v-~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~-r~-----v~yp~  593 (1200)
T KOG0964|consen  521 PNGVFGTVYELIKV-PNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA-RD-----VEYPK  593 (1200)
T ss_pred             ccccceehhhhhcC-CHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch-hh-----ccCCC
Confidence            45788999999999 68999999999998   4799999999988853     24566776652211 00     11221


Q ss_pred             cccccccCCccccccccc----cc-cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccccccc
Q psy14063        390 AKRIGYSGGGYRMVTLEG----AI-IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGL  461 (531)
Q Consensus       390 ~~~~g~~~~~~~~v~~~~----~~-~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~  461 (531)
                        ++.++ +.+..++|++    ++ .+++.++||.|++.|.+.    .  +  ..+-+.|+.+|......|...+|-
T Consensus       594 --~sdai-Pli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~----a--k--~~~ln~ITl~GDqvskkG~lTgGy  659 (1200)
T KOG0964|consen  594 --DSDAI-PLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRL----A--K--KHELNCITLSGDQVSKKGVLTGGY  659 (1200)
T ss_pred             --CCCcc-chHHHhCcchhhHHHHHHHhCceEEeccHHHHHHH----H--H--hcCCCeEEeccceecccCCccccc
Confidence              12221 1222334444    44 899999999999999873    2  2  345556777777554333334443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.66  E-value=5.6e-13  Score=152.10  Aligned_cols=425  Identities=17%  Similarity=0.235  Sum_probs=214.4

Q ss_pred             hHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy14063          7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESI   86 (531)
Q Consensus         7 ~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (531)
                      +....+..-...+..+..-+..|+.+.+....=.+.-.+...+...+-+.+......++..+..++..+.+.+..+...+
T Consensus       176 ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~  255 (1163)
T COG1196         176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEEL  255 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444455556666666666655556667777777888888888889999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHH
Q psy14063         87 KKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKL-------ADLEAN  157 (531)
Q Consensus        87 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~  157 (531)
                      ..+...+......+..+  ++..+...+..  ++......  ...+..+..++..+..+......++       ..+...
T Consensus       256 ~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~--~~~~~~~~--~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1163)
T COG1196         256 EELQEELEEAEKEIEELKSELEELREELEE--LQEELLEL--KEEIEELEGEISLLRERLEELENELEELEERLEELKEK  331 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888877  67777777666  54544444  4344444444444444433333333       333333


Q ss_pred             HHHHHHHHHHH-------HHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q psy14063        158 LEKVQTTLTER-------KTLCEELTTRVPAMESEIA----ESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS--  224 (531)
Q Consensus       158 i~~~e~~l~~~-------~~~l~~l~~~~~~~~~~l~----~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~--  224 (531)
                      +...+..+...       ......+.......+....    .....+..++..+..+...+.....++..++.++..+  
T Consensus       332 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~  411 (1163)
T COG1196         332 IEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE  411 (1163)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333222       1111111111111111111    1112222222333333333333333333333332222  


Q ss_pred             -----hhhHHHH-HHHHHHHhhcCCCCccccccc---cc-ccCcchHHHHHHH--hc-cCCcEEecchHHHHH-------
Q psy14063        225 -----RSNNRLI-DFVMQLKSENRVSGILGRLGD---LG-GIDQKYDIAVSTA--CG-ALNYIVTETVEAGEA-------  284 (531)
Q Consensus       225 -----~~~~~~l-~~l~~~~~~~~~~gv~g~l~~---li-~v~~~y~~Aie~~--lg-~l~~ivv~~~~~a~~-------  284 (531)
                           ..+...+ ..+.....  .+...-..+.+   .+ .....+..+....  +. .+..+ -.....+..       
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~  488 (1163)
T COG1196         412 RLERLSERLEDLKEELKELEA--ELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL-QEELQRLEKELSSLEA  488 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence                 2111111 00000000  00000000000   00 0011111110000  00 00000 000000000       


Q ss_pred             HHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH-
Q psy14063        285 VIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG-  360 (531)
Q Consensus       285 ~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~-  360 (531)
                      -+.-|...  .+. +-+   +.+.. ... ....+|.+|++.+++.| +++|..|+..++|+   .+||+|..+|..+. 
T Consensus       489 ~~~~l~~~--~~~-~~~---~~~~~-~~~-~~~~~Gv~G~v~~li~v-~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~  559 (1163)
T COG1196         489 RLDRLEAE--QRA-SQG---VRAVL-EAL-ESGLPGVYGPVAELIKV-KEKYETALEAALGNRLQAVVVENEEVAKKAIE  559 (1163)
T ss_pred             HHHHHHHH--hhh-hhh---HHHHH-HHH-hccCCCccchHHHhcCc-ChHHHHHHHHHcccccCCeeeCChHHHHHHHH
Confidence            00111100  000 000   00000 000 11257889999999999 67999999999995   68999987776554 


Q ss_pred             --hh--CCCccEEccCCceecCCCceecccccccccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccC
Q psy14063        361 --YS--GGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSG  431 (531)
Q Consensus       361 --~~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~  431 (531)
                        +.  .+...|+++++..-.+..       +....+|+++.++++|+|++.+     ++|++++||++++.|+.+    
T Consensus       560 ~lk~~~~gr~tflpl~~i~~~~~~-------~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l----  628 (1163)
T COG1196         560 FLKENKAGRATFLPLDRIKPLRSL-------KSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRL----  628 (1163)
T ss_pred             HHhhcCCCccccCchhhhcccccc-------ccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHH----
Confidence              32  245667666654311111       1111578888899999998744     899999999999999874    


Q ss_pred             CceeEEccccccccccccccCCCcccccc
Q psy14063        432 GGYRMVTLEGAIIEPSGTMSGGGSNPIRG  460 (531)
Q Consensus       432 ~~~~~vt~~g~~~~~~g~~~gg~~~~~~~  460 (531)
                        .........+|+..|.+.-++|...+|
T Consensus       629 --~~~~~~~~riVTl~G~~~~~~G~~tGG  655 (1163)
T COG1196         629 --ARKLRIKYRIVTLDGDLVEPSGSITGG  655 (1163)
T ss_pred             --HHhcCCCceEEecCCcEEeCCeeeecC
Confidence              223346778999999866555444455

>KOG0018|consensus

Probab=99.53  E-value=3.4e-10  Score=119.34  Aligned_cols=95  Identities=15%  Similarity=0.231  Sum_probs=74.9

Q ss_pred             hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063          5 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLE   84 (531)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (531)
                      ...+-..+.....+.+.+..+...-+.+.+++..|..+.++....+..+.-.++...+..+..+..++..++..+..+..
T Consensus       169 ~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~  248 (1141)
T KOG0018|consen  169 MAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKE  248 (1141)
T ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHh
Confidence            34445556666677777888888888888889999999999988888876668888999999999999999999988888


Q ss_pred             HHHHhHHHHHHHHHH
Q psy14063         85 SIKKCTDEMESAKSE   99 (531)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (531)
                      ..+....++.....+
T Consensus       249 ~~d~~e~ei~~~k~e  263 (1141)
T KOG0018|consen  249 RMDKKEREIRVRKKE  263 (1141)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            777776666665543

>KOG0996|consensus

Probab=99.44  E-value=3.8e-09  Score=112.51  Aligned_cols=191  Identities=20%  Similarity=0.208  Sum_probs=129.9

Q ss_pred             CCCccccccccceecCchHHHHHHHHhhC--CeEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceecccccc
Q psy14063        317 RTPENVPRLIDLIQVQDEKIRLAFYFATR--ETLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQ  389 (531)
Q Consensus       317 ~~~~~~~~~~d~i~~~~~~~~~~~~~llg--~~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~  389 (531)
                      ..|||+|.+.|+-.+ |+.|+.|+..+++  +.+||++.++|...+.   .  .|+.+|+++|-.--+....+.      
T Consensus       614 ~i~Gf~GRLGDLg~I-d~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~------  686 (1293)
T KOG0996|consen  614 RIPGFYGRLGDLGAI-DEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAP------  686 (1293)
T ss_pred             CCCcccccccccccc-chHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCC------
Confidence            357899999999999 7999999999887  4799999999976653   2  378889988743211111010      


Q ss_pred             cccccccCCcccccccc-ccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccccccc--
Q psy14063        390 AKRIGYSGGGYRMVTLE-GAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGL--  461 (531)
Q Consensus       390 ~~~~g~~~~~~~~v~~~-~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~--  461 (531)
                      ...|--+...+++|.+. +.+     +.+++++||++|+.|.+++|  ..    +-.+.+++..|.|..-+|+.+||.  
T Consensus       687 i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiay--gk----~rr~RVvTL~G~lIe~SGtmtGGG~~  760 (1293)
T KOG0996|consen  687 ITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAY--GK----DRRWRVVTLDGSLIEKSGTMTGGGKK  760 (1293)
T ss_pred             CCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhh--cC----CCceEEEEecceeecccccccCCCCc
Confidence            11122233567888764 444     67999999999999988644  22    333678999999887665554442  


Q ss_pred             -ccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy14063        462 -MGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLI  525 (531)
Q Consensus       462 -~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  525 (531)
                       .++.  ..+..+   -...-......++.+++........+..+...+.+.+..+...+..+.-
T Consensus       761 v~~g~--mg~~~~---~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~  820 (1293)
T KOG0996|consen  761 VKGGR--MGTSIR---VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELEN  820 (1293)
T ss_pred             CCCCC--CCCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence             1222  222211   1122345778888888888888888888888888888888777766543

>KOG0250|consensus

Probab=99.42  E-value=2.7e-08  Score=106.21  Aligned_cols=449  Identities=15%  Similarity=0.203  Sum_probs=211.0

Q ss_pred             HhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14063         12 RTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTD   91 (531)
Q Consensus        12 ~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   91 (531)
                      +..-.+.+...+..+..++++..++.+.+.--+.++.+...+-+..-.-.=..+.....++..+...+...+++...+..
T Consensus       223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~  302 (1074)
T KOG0250|consen  223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQE  302 (1074)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556777777777777776665544444444333333222222233444555555555555555556556655


Q ss_pred             HHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063         92 EMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERK  169 (531)
Q Consensus        92 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~  169 (531)
                      +++.....+..+  .+...+..+..  +..+.+..  ..+++.+...+...+.+..+++.++..+...+.........++
T Consensus       303 ki~~~~~k~~~~r~k~teiea~i~~--~~~e~~~~--d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~  378 (1074)
T KOG0250|consen  303 KIEEKQGKIEEARQKLTEIEAKIGE--LKDEVDAQ--DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE  378 (1074)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHH--HHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544443  33344444444  44444444  5555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCccc
Q psy14063        170 TLCEELTTRV-PAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILG  248 (531)
Q Consensus       170 ~~l~~l~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g  248 (531)
                      ..+.+++.+. ..+..++.+...++..+..+...++..+..+..+++.....+.........+               - 
T Consensus       379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i---------------~-  442 (1074)
T KOG0250|consen  379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI---------------E-  442 (1074)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------------H-
Confidence            5555555544 4444445555555555555555555544444444444444433322111001               0 


Q ss_pred             ccccccccCc--ch-HHHHHHHhc----cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCCcc
Q psy14063        249 RLGDLGGIDQ--KY-DIAVSTACG----ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPEN  321 (531)
Q Consensus       249 ~l~~li~v~~--~y-~~Aie~~lg----~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~  321 (531)
                        +...++..  .+ ..-|...-.    .+..|= .+.   -.++..+.....   -|                  ..+.
T Consensus       443 --~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m---~~lL~~I~r~~~---~f------------------~~~P  495 (1074)
T KOG0250|consen  443 --GEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNM---PQLLRAIERRKR---RF------------------QTPP  495 (1074)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhh---HHHHHHHHHHHh---cC------------------CCCC
Confidence              01111100  00 000000000    000110 000   011111111000   00                  0112


Q ss_pred             ccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH---hh--CCC--ccEEcc--CCceecCCCceecccccc
Q psy14063        322 VPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG---YS--GGG--YRMVTL--EGAIIEPSETLVAQDLNQ  389 (531)
Q Consensus       322 ~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~---~~--~~~--~~~vt~--~G~~~~~~~~~~~~~~~~  389 (531)
                      .||+..+|.+++|.|..+++..||+   .+||.+..++..+.   +.  .|+  +.+|+.  +|..+..+          
T Consensus       496 ~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~----------  565 (1074)
T KOG0250|consen  496 KGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVG----------  565 (1074)
T ss_pred             CCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccc----------
Confidence            3456667777688999999999986   57888887765432   22  232  444432  22222111          


Q ss_pred             cccccc-cCCcccccccc-ccc-c------ccCchhHHhhHHHHHh-cccc--CCc-eeEEcccccccccccc---ccCC
Q psy14063        390 AKRIGY-SGGGYRMVTLE-GAI-I------EPSETLVAQDLNQAKR-IGYS--GGG-YRMVTLEGAIIEPSGT---MSGG  453 (531)
Q Consensus       390 ~~~~g~-~~~~~~~v~~~-~~~-~------l~~~~~~~~~l~~a~~-~~~~--~~~-~~~vt~~g~~~~~~g~---~~gg  453 (531)
                       ..||. ..-.++.+.++ +.+ +      =...+++..|-..|.+ +.+.  .+. ..+-|++|..+...|-   ++.+
T Consensus       566 -~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt  644 (1074)
T KOG0250|consen  566 -RNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYST  644 (1074)
T ss_pred             -cCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceecc
Confidence             11122 11112233442 222 1      1356677777666665 3333  222 2355899987766554   2222


Q ss_pred             Cccccc--ccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhh
Q psy14063        454 GSNPIR--GLMGRKATVSTDTSLVKDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLID  526 (531)
Q Consensus       454 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  526 (531)
                      .+....  +.      +....  ...+..++.++..++.++..+..++.+.+..+.++...+..+...+...+..
T Consensus       645 ~~~~~r~~~~------~~~s~--d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~  711 (1074)
T KOG0250|consen  645 RGTRARRPGV------DEFSF--DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRR  711 (1074)
T ss_pred             CCCCCCCccc------cchhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211111  11      11111  2667777777777777766666666666666666666666655555544443

>KOG0933|consensus

Probab=99.32  E-value=5.4e-08  Score=102.26  Aligned_cols=133  Identities=14%  Similarity=0.132  Sum_probs=87.5

Q ss_pred             cccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh---CCCccEEccCCceecCCCceecccccc--ccc
Q psy14063        321 NVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS---GGGYRMVTLEGAIIEPSETLVAQDLNQ--AKR  392 (531)
Q Consensus       321 ~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~---~~~~~~vt~~G~~~~~~~~~~~~~~~~--~~~  392 (531)
                      ..|.+..+|++.|..|..|+....|+   -+||+|-+.+..++..   ..++.+|+++-....+   +++...+.  .-.
T Consensus       521 V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~---~s~~v~~~ak~v~  597 (1174)
T KOG0933|consen  521 VKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFV---LSPNVLQAAKNVG  597 (1174)
T ss_pred             HHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhcc---CCHhHHHHHHHhc
Confidence            45677788888778898899988886   4788998999888763   2567788877443211   11111111  122


Q ss_pred             ccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcccccccc
Q psy14063        393 IGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLM  462 (531)
Q Consensus       393 ~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~~  462 (531)
                      ++-+.+++++|.|++.+     |+||.++||++++.|++++|  .+ +   ..-..|+..|.+...+|...||..
T Consensus       598 ~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf--~~-~---i~~rsVTl~GDV~dP~GtlTGGs~  666 (1174)
T KOG0933|consen  598 NDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAF--DP-K---IRTRSVTLEGDVYDPSGTLTGGSR  666 (1174)
T ss_pred             CchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhc--cc-c---cccceeeecCceeCCCCcccCCCC
Confidence            44555777888888766     89999999999999988533  11 1   111236777777766666555543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=99.14  E-value=1.5e-07  Score=107.76  Aligned_cols=48  Identities=19%  Similarity=0.252  Sum_probs=43.1

Q ss_pred             CCCcccccccccc-cCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHc
Q psy14063        243 VSGILGRLGDLGG-IDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQ  292 (531)
Q Consensus       243 ~~gv~g~l~~li~-v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~  292 (531)
                      ++|++  |+++++ |+++|+.|+++++| .+++|||++..+|..+|++|..+
T Consensus       682 ~~Gvl--vsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~  731 (1486)
T PRK04863        682 FGGVL--LSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLEDC  731 (1486)
T ss_pred             cCCee--hhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccCC
Confidence            45555  899998 99999999999999 89999999999999999999763

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.70  E-value=2.9e-05  Score=72.64  Aligned_cols=211  Identities=18%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063          5 YGKYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANL   83 (531)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (531)
                      +..+...+.....++..++..+.........+ .++..+..++..+     -..+......+.....++..+.....+.+
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l-----E~~le~~eerL~~~~~kL~~~e~~~de~e   77 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL-----EEELERAEERLEEATEKLEEAEKRADESE   77 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555444 3444444444444     22233333333344444444444443333


Q ss_pred             HHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14063         84 ESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKV  161 (531)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~  161 (531)
                      ...+.+..........+..+  .+.........  ....+.++  ..++..+...++....+...+..++..+..++...
T Consensus        78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee--~e~k~~E~--~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~  153 (237)
T PF00261_consen   78 RARKVLENREQSDEERIEELEQQLKEAKRRAEE--AERKYEEV--ERKLKVLEQELERAEERAEAAESKIKELEEELKSV  153 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--HHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence            33333333333333333222  22222333333  44444445  55555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063        162 QTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS  224 (531)
Q Consensus       162 e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~  224 (531)
                      ...+..++............++..+..+..++.............+..+...+..+...+...
T Consensus       154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~  216 (237)
T PF00261_consen  154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE  216 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555554444444444444444444444444444444444444445555554444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.58  E-value=0.0031  Score=73.78  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             HHHhHHhhhhHHHHHHHhhccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy14063         10 EERTEKLTRVQLVETDLKALEPELRKAVNFL-------ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTAN   82 (531)
Q Consensus        10 ~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~-------~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (531)
                      ..+.+++..++.++..+..++.....+..+.       ..........-......+......+..+..+++....++..+
T Consensus       223 ~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (1353)
T TIGR02680       223 TDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEEREL  302 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666665554444       333333333334456666777777777777777777777777


Q ss_pred             HHHHHHhHHHHHHHHHHHHHH
Q psy14063         83 LESIKKCTDEMESAKSELKTV  103 (531)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~  103 (531)
                      +..+..++.+++.+..++..+
T Consensus       303 ~~~~~~le~~~~~l~~~~~~l  323 (1353)
T TIGR02680       303 DARTEALEREADALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777776666655

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.54  E-value=6.1e-05  Score=70.53  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=13.6

Q ss_pred             hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063          5 YGKYDEERTEKLTRVQLVETDLKALEPELRKA   36 (531)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a   36 (531)
                      ++.+.+.+......++.........+.++...
T Consensus        10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l   41 (237)
T PF00261_consen   10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASL   41 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.39  E-value=0.011  Score=68.86  Aligned_cols=98  Identities=18%  Similarity=0.210  Sum_probs=56.5

Q ss_pred             hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy14063          4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN--EIYQYERYVNMKNLGEHETKVQQMEQELTA   81 (531)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (531)
                      .++..+..+.+-...+..++..+..|+.+++.+.+|..+..++..+..  ......+.+....+......+..+..++..
T Consensus       301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeelee  380 (1486)
T PRK04863        301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEE  380 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555566789999999999999999888776333211  223334444455555555555555555555


Q ss_pred             HHHHHHHhHHHHHHHHHHHH
Q psy14063         82 NLESIKKCTDEMESAKSELK  101 (531)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~  101 (531)
                      +...+..+..++..++.++.
T Consensus       381 leeEleelEeeLeeLqeqLa  400 (1486)
T PRK04863        381 NEARAEAAEEEVDELKSQLA  400 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554444443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.30  E-value=0.00092  Score=75.70  Aligned_cols=43  Identities=21%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             hHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy14063          7 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRK   49 (531)
Q Consensus         7 ~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~~l   49 (531)
                      .+...+......+..++.++..++..++.+....+...++..+
T Consensus       472 ~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l  514 (880)
T PRK02224        472 EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL  514 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555666666666555554444444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.27  E-value=0.00066  Score=76.85  Aligned_cols=22  Identities=32%  Similarity=0.285  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q psy14063        202 KLLDQVEKLAREVSEKRESMQT  223 (531)
Q Consensus       202 ~~~~~l~~l~~~l~~~~~~~~~  223 (531)
                      .....+..++..+..++..+..
T Consensus       409 ~~e~~l~~l~~~~~~l~~~~~~  430 (880)
T PRK02224        409 NAEDFLEELREERDELREREAE  430 (880)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444333

>KOG0161|consensus

Probab=98.15  E-value=0.0027  Score=74.31  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=36.4

Q ss_pred             hHHHHHhHHhhhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063          7 KYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEI--YQYERYVNMKNLGEHETKVQQMEQELTANL   83 (531)
Q Consensus         7 ~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (531)
                      .+...+.+...++...+.....|+.++.++ .+...++..+..+...+  ...+....+.++..++.++..+++.+..+.
T Consensus       905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~  984 (1930)
T KOG0161|consen  905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS  984 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555554 33344444444443332  233444444444444444444444444443


Q ss_pred             H
Q psy14063         84 E   84 (531)
Q Consensus        84 ~   84 (531)
                      .
T Consensus       985 k  985 (1930)
T KOG0161|consen  985 K  985 (1930)
T ss_pred             H
Confidence            3

>KOG0161|consensus

Probab=98.12  E-value=0.0029  Score=74.02  Aligned_cols=81  Identities=21%  Similarity=0.311  Sum_probs=33.2

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        141 LSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       141 ~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~  220 (531)
                      .....++...+.....++..+...+......+..+...+.++...+.++...++.-+.....+......+...+.+++.+
T Consensus      1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444444444444444444444444444444444444444444444444444333


Q ss_pred             H
Q psy14063        221 M  221 (531)
Q Consensus       221 ~  221 (531)
                      +
T Consensus      1141 L 1141 (1930)
T KOG0161|consen 1141 L 1141 (1930)
T ss_pred             H
Confidence            3

>PRK03918 chromosome segregation protein; Provisional

Probab=98.11  E-value=0.004  Score=70.67  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=8.3

Q ss_pred             HHhHHhhhhHHHHHHHhhccHH
Q psy14063         11 ERTEKLTRVQLVETDLKALEPE   32 (531)
Q Consensus        11 ~~~~~~~~~~~~e~~~~~Le~~   32 (531)
                      .+.+..+++..+..++..++..
T Consensus       460 ei~~l~~~~~~l~~~~~~l~~~  481 (880)
T PRK03918        460 ELKRIEKELKEIEEKERKLRKE  481 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.09  E-value=0.0095  Score=55.94  Aligned_cols=91  Identities=14%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVE  208 (531)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~  208 (531)
                      ++..+..++..++....++.++|..+-..++.+-..+...-.+.+++....+.+...+-........+...+..+...+.
T Consensus       159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr  238 (294)
T COG1340         159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR  238 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHH
Q psy14063        209 KLAREVSEKRE  219 (531)
Q Consensus       209 ~l~~~l~~~~~  219 (531)
                      .+...+..++.
T Consensus       239 e~~k~ik~l~~  249 (294)
T COG1340         239 ELEKKIKALRA  249 (294)
T ss_pred             HHHHHHHHHHH
Confidence            55544444443

>PRK11637 AmiB activator; Provisional

Probab=98.07  E-value=0.009  Score=61.45  Aligned_cols=44  Identities=16%  Similarity=0.196  Sum_probs=19.7

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063         57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL  100 (531)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  100 (531)
                      ++.....++...+.++..++.++..++..+..+...+......+
T Consensus        83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444433

>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins

Probab=98.06  E-value=3.6e-06  Score=70.15  Aligned_cols=104  Identities=25%  Similarity=0.303  Sum_probs=73.8

Q ss_pred             CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh-----CCCccEEccCCceecCCCceeccccccc
Q psy14063        319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS-----GGGYRMVTLEGAIIEPSETLVAQDLNQA  390 (531)
Q Consensus       319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~-----~~~~~~vt~~G~~~~~~~~~~~~~~~~~  390 (531)
                      +|.+|.+.+++++ +++|..+++.+||+   .+||++.+.|..+...     .++..|++++..........    .+..
T Consensus         2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~----~~~~   76 (120)
T PF06470_consen    2 PGVLGRLADLIEV-DPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASS----ADQI   76 (120)
T ss_dssp             TTEEEEGGGSEEE-SGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCC----CGGH
T ss_pred             CCeeeeHHhceec-CHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccc----hhhc
Confidence            4678899999999 89999999999995   7999999999776642     24566777664321111000    0000


Q ss_pred             ccccccCCccccccc-cccc-----cccCchhHHhhHHHHHhc
Q psy14063        391 KRIGYSGGGYRMVTL-EGAI-----IEPSETLVAQDLNQAKRI  427 (531)
Q Consensus       391 ~~~g~~~~~~~~v~~-~~~~-----~l~~~~~~~~~l~~a~~~  427 (531)
                      ..+|.+.++.++|++ ++.+     ++|+++++|+|+++|.++
T Consensus        77 ~~~~~~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~l  119 (120)
T PF06470_consen   77 RPPGGAGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKL  119 (120)
T ss_dssp             HSTTSEEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHH
T ss_pred             cCCcchHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHh
Confidence            124556677788888 6555     899999999999999864

The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.

>KOG0979|consensus

Probab=98.05  E-value=0.009  Score=64.39  Aligned_cols=165  Identities=17%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHhchhhccccc-chHHHHHhHHhHhHHHH
Q psy14063         57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV---EKKGKESNVIGS-KFRWSVFSAKTRFECDI  132 (531)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  132 (531)
                      ++.++....+.+........+.+..++..+..+.+..+...+.....   ++-.....+..+ +...++...  ....+.
T Consensus       182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~--k~~~~r  259 (1072)
T KOG0979|consen  182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAY--KQAKDR  259 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHH--HHHHHH
Confidence            44444444445555555555555555555555544444443322111   111111111110 144444444  444444


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        133 AKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTL-------CEELTTRVPAMESEIAESRARLADLTREEAKLLD  205 (531)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~-------l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~  205 (531)
                      ++.++..+.+....+...+..++.+......++......       ..+.-..+......+..+...+..++.+....+.
T Consensus       260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~  339 (1072)
T KOG0979|consen  260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQK  339 (1072)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455554444444444444444444444444444433333       3333344444444444555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy14063        206 QVEKLAREVSEKRESMQT  223 (531)
Q Consensus       206 ~l~~l~~~l~~~~~~~~~  223 (531)
                      .+......+.+++..++.
T Consensus       340 ~i~~~~k~i~~~q~el~~  357 (1072)
T KOG0979|consen  340 RIEKAKKMILDAQAELQE  357 (1072)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            555555555555555543

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.00  E-value=0.005  Score=66.05  Aligned_cols=62  Identities=15%  Similarity=0.152  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063        163 TTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS  224 (531)
Q Consensus       163 ~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~  224 (531)
                      ..+.+++..+......+..+..+...++.++..++........++..+..++.++.......
T Consensus       337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~  398 (562)
T PHA02562        337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL  398 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444444444444444444444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.00  E-value=0.012  Score=62.81  Aligned_cols=14  Identities=29%  Similarity=0.344  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHH
Q psy14063         42 LENCVQRKHNEIYQ   55 (531)
Q Consensus        42 ~~~~l~~l~~~l~~   55 (531)
                      +++.|..+......
T Consensus       170 le~~l~~~e~~f~~  183 (569)
T PRK04778        170 LEKQLENLEEEFSQ  183 (569)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555554433

>PRK03918 chromosome segregation protein; Provisional

Probab=97.99  E-value=0.0085  Score=68.02  Aligned_cols=17  Identities=12%  Similarity=0.167  Sum_probs=6.3

Q ss_pred             hHHHHHhHHhhhhHHHH
Q psy14063          7 KYDEERTEKLTRVQLVE   23 (531)
Q Consensus         7 ~l~~~~~~~~~~~~~~e   23 (531)
                      .+...+..-.+++..++
T Consensus       463 ~l~~~~~~l~~~~~~l~  479 (880)
T PRK03918        463 RIEKELKEIEEKERKLR  479 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.97  E-value=0.005  Score=66.05  Aligned_cols=70  Identities=21%  Similarity=0.312  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        151 LADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       151 i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~  220 (531)
                      +..+..++..+...+......+..+......++.++..+......+..++..+..++..+...+.++...
T Consensus       332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke  401 (562)
T PHA02562        332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE  401 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444444444444444443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.94  E-value=0.019  Score=58.89  Aligned_cols=18  Identities=17%  Similarity=0.370  Sum_probs=7.6

Q ss_pred             hHHHHHHHhhccHHHHHH
Q psy14063         19 VQLVETDLKALEPELRKA   36 (531)
Q Consensus        19 ~~~~e~~~~~Le~~~~~a   36 (531)
                      ...++.++..|+.++++.
T Consensus       159 ~~~Le~e~~~l~~~v~~l  176 (546)
T PF07888_consen  159 NEQLEEEVEQLREEVERL  176 (546)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=97.91  E-value=0.011  Score=69.44  Aligned_cols=43  Identities=23%  Similarity=0.155  Sum_probs=19.1

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063         58 RYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL  100 (531)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  100 (531)
                      ....+..+..+...+..+...+..++..+..+...+..+...+
T Consensus       883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1311)
T TIGR00606       883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK  925 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            3344444444444444444444444444444444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.85  E-value=0.032  Score=59.31  Aligned_cols=12  Identities=25%  Similarity=0.379  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHH
Q psy14063         42 LENCVQRKHNEI   53 (531)
Q Consensus        42 ~~~~l~~l~~~l   53 (531)
                      +++.+..+....
T Consensus       166 Le~~L~~ie~~F  177 (560)
T PF06160_consen  166 LEKQLENIEEEF  177 (560)
T ss_pred             HHHHHHHHHHHH
Confidence            455555554443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.83  E-value=0.038  Score=56.81  Aligned_cols=16  Identities=19%  Similarity=0.214  Sum_probs=6.4

Q ss_pred             HHHHHHhhccHHHHHH
Q psy14063         21 LVETDLKALEPELRKA   36 (531)
Q Consensus        21 ~~e~~~~~Le~~~~~a   36 (531)
                      .+.+....|+.+....
T Consensus       154 eL~~~~~~Le~e~~~l  169 (546)
T PF07888_consen  154 ELLKENEQLEEEVEQL  169 (546)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=97.81  E-value=0.038  Score=56.89  Aligned_cols=41  Identities=2%  Similarity=0.046  Sum_probs=19.8

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14063         55 QYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMES   95 (531)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (531)
                      ...+......+...+.++..++.+|..++..+......+..
T Consensus        88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~  128 (428)
T PRK11637         88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA  128 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555555555544444444433

>KOG0977|consensus

Probab=97.77  E-value=0.017  Score=59.24  Aligned_cols=145  Identities=17%  Similarity=0.201  Sum_probs=76.0

Q ss_pred             hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy14063          3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE-NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTA   81 (531)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (531)
                      +++-.||+.+...+++++.++.+...|+.++..+..-.... ..+..+    +-.++....+-+.........++.++..
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~----ye~El~~ar~~l~e~~~~ra~~e~ei~k  117 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAK----YEAELATARKLLDETARERAKLEIEITK  117 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999886554322 222222    2334444444444444444444444444


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy14063         82 NLESIKKCTDEMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLE  155 (531)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  155 (531)
                      +...++.+...+.+........  .+..+...+..  ++.++..+  ...+..+..++..++.+...+...|..++
T Consensus       118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~--leAe~~~~--krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSE--LEAEINTL--KRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh--hhhHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4444444444444433322222  22333333334  44444444  33434344444444333333333333333

>TIGR00606 rad50 rad50

Probab=97.75  E-value=0.024  Score=66.76  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=8.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHH
Q psy14063        167 ERKTLCEELTTRVPAMESEIAESR  190 (531)
Q Consensus       167 ~~~~~l~~l~~~~~~~~~~l~~l~  190 (531)
                      .++.++..+...+..+..++....
T Consensus       988 ~le~e~~~l~~~i~~l~kel~~~~ 1011 (1311)
T TIGR00606       988 ECEKHQEKINEDMRLMRQDIDTQK 1011 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.72  E-value=0.1  Score=56.65  Aligned_cols=102  Identities=17%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ  206 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~  206 (531)
                      ..++..+.+++........+....|+.++..+...+.....+..+++.+...++.....+......+..+..+......+
T Consensus       300 ~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~E  379 (775)
T PF10174_consen  300 KSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGE  379 (775)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555666666666655555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH
Q psy14063        207 VEKLAREVSEKRESMQTSRSNN  228 (531)
Q Consensus       207 l~~l~~~l~~~~~~~~~~~~~~  228 (531)
                      +..+...++.....+..+.++.
T Consensus       380 i~~l~d~~d~~e~ki~~Lq~ki  401 (775)
T PF10174_consen  380 IEDLRDMLDKKERKINVLQKKI  401 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555544443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.68  E-value=0.068  Score=52.58  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063          3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKA   36 (531)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a   36 (531)
                      ..+..||+.+...++++..++.+...|+.++...
T Consensus         4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~   37 (312)
T PF00038_consen    4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEEL   37 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3567899999999999999999999999998876

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG1029|consensus

Probab=97.62  E-value=0.064  Score=56.21  Aligned_cols=39  Identities=15%  Similarity=0.232  Sum_probs=18.0

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTL  165 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l  165 (531)
                      ...++...+++..++.++.+.++.+..+--+.+.+...+
T Consensus       478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql  516 (1118)
T KOG1029|consen  478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL  516 (1118)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            444444444555555555555444444444444444333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.61  E-value=0.086  Score=51.84  Aligned_cols=14  Identities=21%  Similarity=0.475  Sum_probs=5.7

Q ss_pred             HHHHhhccHHHHHH
Q psy14063         23 ETDLKALEPELRKA   36 (531)
Q Consensus        23 e~~~~~Le~~~~~a   36 (531)
                      +.++..|...++.+
T Consensus        53 e~el~~lr~~id~~   66 (312)
T PF00038_consen   53 EEELRELRRQIDDL   66 (312)
T ss_dssp             HHHHHCHHHHHHHH
T ss_pred             hhHHHHhHHhhhhH
Confidence            34444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.60  E-value=0.066  Score=50.45  Aligned_cols=81  Identities=14%  Similarity=0.236  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063        144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT  223 (531)
Q Consensus       144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~  223 (531)
                      ...+......+...+..+..+......++..+-...+.+..+.+.+...+..+......+...+.+++..+.++...+..
T Consensus       167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~  246 (294)
T COG1340         167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA  246 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444445555555555555555555555555555555555555555555544


Q ss_pred             h
Q psy14063        224 S  224 (531)
Q Consensus       224 ~  224 (531)
                      +
T Consensus       247 l  247 (294)
T COG1340         247 L  247 (294)
T ss_pred             H
Confidence            3

>KOG0994|consensus

Probab=97.57  E-value=0.1  Score=57.16  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=24.6

Q ss_pred             hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHHHHH
Q psy14063          3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL   40 (531)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~~~~   40 (531)
                      +.|..|-..+++....+..++.-+..-..++.+|..+.
T Consensus      1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~ 1548 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQ 1548 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHH
Confidence            35666777777777777777666666666665554443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.54  E-value=0.15  Score=53.79  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=21.6

Q ss_pred             hhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063          5 YGKYDEERTEKLTRVQLVETDLKALEPELRKA   36 (531)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a   36 (531)
                      .+........+..++..+..++..|+...+.+
T Consensus       160 aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~  191 (522)
T PF05701_consen  160 AEEAVSAAEENEEKVEELSKEIIALKESLESA  191 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556677777777777777777776654

Several sequences in this family are described as being myosin heavy chain-like.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.50  E-value=0.14  Score=55.74  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             hhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063          6 GKYDEERTEKLTRVQLVETDLKALEPELRKA   36 (531)
Q Consensus         6 ~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a   36 (531)
                      +.++..+..+-+++..+++.+..|+.++...
T Consensus       227 ~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L  257 (775)
T PF10174_consen  227 EALQTVIEEKDTKIASLERMLRDLEDEIYRL  257 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677777777766666666666655

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.49  E-value=0.077  Score=57.31  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=19.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        140 FLSTQSKETKKLADLEANLEKVQTTLTERKTLCEE  174 (531)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~  174 (531)
                      .+.+..+++.++..++.++...++.+..++.+..+
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~  577 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQE  577 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555554433

; GO: 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.48  E-value=0.024  Score=60.51  Aligned_cols=25  Identities=12%  Similarity=-0.020  Sum_probs=10.9

Q ss_pred             hHHHHHhHHhHhHHHHHHHHHHHHHhh
Q psy14063        117 FRWSVFSAKTRFECDIAKSELEIFLST  143 (531)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (531)
                      +...+..+  ......+..+++.+...
T Consensus       315 l~~~l~~~--~e~~~~l~~Ei~~l~~s  339 (569)
T PRK04778        315 LPDFLEHA--KEQNKELKEEIDRVKQS  339 (569)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHc
Confidence            33344444  44444444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.44  E-value=0.046  Score=50.23  Aligned_cols=30  Identities=13%  Similarity=0.255  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy14063        154 LEANLEKVQTTLTERKTLCEELTTRVPAME  183 (531)
Q Consensus       154 ~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~  183 (531)
                      +..++..++.++..++.++.++...+..++
T Consensus        94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~  123 (239)
T COG1579          94 LNIEIQIAKERINSLEDELAELMEEIEKLE  123 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.44  E-value=0.031  Score=47.56  Aligned_cols=13  Identities=15%  Similarity=0.317  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q psy14063        156 ANLEKVQTTLTER  168 (531)
Q Consensus       156 ~~i~~~e~~l~~~  168 (531)
                      .++..++.++...
T Consensus        80 rriq~LEeele~a   92 (143)
T PF12718_consen   80 RRIQLLEEELEEA   92 (143)
T ss_pred             hhHHHHHHHHHHH
Confidence            3333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0971|consensus

Probab=97.42  E-value=0.18  Score=53.89  Aligned_cols=8  Identities=25%  Similarity=0.409  Sum_probs=3.5

Q ss_pred             chHHHHHH
Q psy14063        259 KYDIAVST  266 (531)
Q Consensus       259 ~y~~Aie~  266 (531)
                      .|..|||.
T Consensus       577 ayaraie~  584 (1243)
T KOG0971|consen  577 AYARAIEM  584 (1243)
T ss_pred             HHHHHHHH
Confidence            34444443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.41  E-value=0.22  Score=56.63  Aligned_cols=7  Identities=14%  Similarity=0.306  Sum_probs=2.6

Q ss_pred             EEccccc
Q psy14063        436 MVTLEGA  442 (531)
Q Consensus       436 ~vt~~g~  442 (531)
                      +||-+-+
T Consensus       865 ~ish~~~  871 (895)
T PRK01156        865 MISHHRE  871 (895)
T ss_pred             EEECchH
Confidence            3343333

>KOG0971|consensus

Probab=97.39  E-value=0.28  Score=52.60  Aligned_cols=13  Identities=15%  Similarity=0.301  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHcCC
Q psy14063        282 GEAVIAAVKRQNV  294 (531)
Q Consensus       282 a~~~i~~Lk~~~~  294 (531)
                      .+.+|+.||..++
T Consensus       712 lD~~ieLLkk~ql  724 (1243)
T KOG0971|consen  712 LDFLIELLKKDQL  724 (1243)
T ss_pred             HHHHHHHHhhccc
Confidence            3445555665544

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.34  E-value=0.17  Score=59.16  Aligned_cols=36  Identities=14%  Similarity=0.249  Sum_probs=17.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063         65 LGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL  100 (531)
Q Consensus        65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  100 (531)
                      +..+..+++.++..+..+......+..++.....++
T Consensus       354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l  389 (1201)
T PF12128_consen  354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL  389 (1201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555544444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.29  E-value=0.27  Score=53.28  Aligned_cols=18  Identities=33%  Similarity=0.497  Sum_probs=10.9

Q ss_pred             HHHHHHhhccHHHHHHHH
Q psy14063         21 LVETDLKALEPELRKAVN   38 (531)
Q Consensus        21 ~~e~~~~~Le~~~~~a~~   38 (531)
                      .++.+++.|+.+......
T Consensus       422 rLE~dvkkLraeLq~~Rq  439 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQ  439 (697)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            466666666666665533

; GO: 0016021 integral to membrane

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.29  E-value=0.33  Score=51.19  Aligned_cols=6  Identities=0%  Similarity=-0.202  Sum_probs=2.1

Q ss_pred             HHHHHH
Q psy14063         44 NCVQRK   49 (531)
Q Consensus        44 ~~l~~l   49 (531)
                      .++..+
T Consensus       179 ~Ei~~l  184 (522)
T PF05701_consen  179 KEIIAL  184 (522)
T ss_pred             HHHHHH
Confidence            333333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4674|consensus

Probab=97.27  E-value=0.52  Score=55.25  Aligned_cols=52  Identities=6%  Similarity=0.081  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHH--HHhchhhcccccchHHHHHhHHhHhHHHHHHHHHHHHHhhhHHH
Q psy14063         92 EMESAKSELKTV--EKKGKESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKE  147 (531)
Q Consensus        92 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (531)
                      .+..+...++.+  ++.+++..+..  ++.++...  ..++..++.+...++.+..++
T Consensus      1244 k~qEl~~~i~kl~~el~plq~~l~e--l~~e~~~~--~ael~~l~~e~~~wK~R~q~L 1297 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKE--LKAELQEK--VAELKKLEEENDRWKQRNQDL 1297 (1822)
T ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443  44455555555  55555555  555555555555555555444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.25  E-value=0.25  Score=49.17  Aligned_cols=72  Identities=13%  Similarity=0.173  Sum_probs=49.9

Q ss_pred             hhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14063         17 TRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEM   93 (531)
Q Consensus        17 ~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   93 (531)
                      .+++.+..++..++...... .++..++.++..+     ..++...+..+......+..++.+|..++..++.+..+-
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~-----e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSL-----ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            56677777777777777766 5566677777777     556666677777777777777777777777666665544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.24  E-value=0.74  Score=54.41  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=18.8

Q ss_pred             ccccceecCchHHHHHHHHhhC-----CeEEEcC
Q psy14063        324 RLIDLIQVQDEKIRLAFYFATR-----ETLVAQD  352 (531)
Q Consensus       324 ~~~d~i~~~~~~~~~~~~~llg-----~~~v~~~  352 (531)
                      +++++++.-++..+..++..|.     +.+|+++
T Consensus       606 ~l~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~  639 (1353)
T TIGR02680       606 QLVDFADDVPADVRAGLEAALEAAGLLDAWVTAD  639 (1353)
T ss_pred             hheecCCCCCHHHHHHHHHHHHHCCCcceeeCCC
Confidence            4566665436778888888773     3566665

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.24  E-value=0.27  Score=52.17  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=60.9

Q ss_pred             hHHHHHhHHhHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Q psy14063        117 FRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTR--VPAMESEIAESRARLA  194 (531)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~--~~~~~~~l~~l~~~~~  194 (531)
                      +..++..+  +........+......++..+..+++.+..++...++.+..+..+++.+...  ......++-++-..+.
T Consensus       424 L~~e~r~l--k~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~  501 (594)
T PF05667_consen  424 LIEEYRRL--KEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIR  501 (594)
T ss_pred             HHHHHHHH--HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH
Confidence            44555555  4444444444444455556666666666667766666666666666665433  3444555666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        195 DLTREEAKLLDQVEKLAREVSEKRESMQ  222 (531)
Q Consensus       195 ~l~~~~~~~~~~l~~l~~~l~~~~~~~~  222 (531)
                      +.+.++..+-.....++.+++.+...+.
T Consensus       502 KQk~eI~KIl~DTr~lQkeiN~l~gkL~  529 (594)
T PF05667_consen  502 KQKEEIEKILSDTRELQKEINSLTGKLD  529 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666665554

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.22  E-value=0.41  Score=50.97  Aligned_cols=10  Identities=30%  Similarity=0.517  Sum_probs=5.8

Q ss_pred             chHHHHHHHh
Q psy14063        259 KYDIAVSTAC  268 (531)
Q Consensus       259 ~y~~Aie~~l  268 (531)
                      .|..|++++.
T Consensus       531 ~Y~~ALe~i~  540 (560)
T PF06160_consen  531 DYEKALETIA  540 (560)
T ss_pred             CHHHHHHHHH
Confidence            4666666554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.16  E-value=0.17  Score=45.42  Aligned_cols=92  Identities=14%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy14063          4 LYGKYDEERTEKLTRVQLVETDLKALEPELRK---A-VNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL   79 (531)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~---a-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (531)
                      .|..|.+.+.+...++..+..+...|+.--.+   | ..|..-+.++-.+        +......++.+...+....+..
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpql--------l~~h~eEvr~Lr~~LR~~q~~~   84 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQL--------LQRHNEEVRVLRERLRKSQEQE   84 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677777777777766666555543332   2 3343333333333        3444445555555555555555


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063         80 TANLESIKKCTDEMESAKSELKTV  103 (531)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~  103 (531)
                      ..++..+.....++..+...+..+
T Consensus        85 r~~~~klk~~~~el~k~~~~l~~L  108 (194)
T PF15619_consen   85 RELERKLKDKDEELLKTKDELKHL  108 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555544443

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=97.14  E-value=0.37  Score=48.93  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063        181 AMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTS  224 (531)
Q Consensus       181 ~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~  224 (531)
                      .+...++.+...+..++++.......+..++..-...+..+.++
T Consensus       379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~  422 (570)
T COG4477         379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERL  422 (570)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333

>KOG0977|consensus

Probab=96.97  E-value=0.17  Score=52.13  Aligned_cols=21  Identities=10%  Similarity=0.140  Sum_probs=8.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHH
Q psy14063         64 NLGEHETKVQQMEQELTANLE   84 (531)
Q Consensus        64 ~~~~~~~~~~~~~~~l~~~~~   84 (531)
                      +.+.++.+-..+...|..+..
T Consensus        57 kVR~LEaqN~~L~~di~~lr~   77 (546)
T KOG0977|consen   57 KVRFLEAQNRKLEHDINLLRG   77 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444433

>KOG0980|consensus

Probab=96.95  E-value=0.77  Score=49.38  Aligned_cols=15  Identities=13%  Similarity=0.324  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHHH
Q psy14063         68 HETKVQQMEQELTAN   82 (531)
Q Consensus        68 ~~~~~~~~~~~l~~~   82 (531)
                      .+++++.+.+++..+
T Consensus       422 ~e~ry~klkek~t~l  436 (980)
T KOG0980|consen  422 AENRYEKLKEKYTEL  436 (980)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>KOG0995|consensus

Probab=96.81  E-value=0.75  Score=47.20  Aligned_cols=48  Identities=19%  Similarity=0.224  Sum_probs=28.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14063         54 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELK  101 (531)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  101 (531)
                      ++..+...+.+...+...++.+..++..-+.+++.+..+...++..++
T Consensus       278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555566666666666666666666666666666665555443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.77  E-value=1  Score=48.08  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=19.5

Q ss_pred             hHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHH
Q psy14063         19 VQLVETDLKALEPELRKA-VNFLELENCVQRKHNEI   53 (531)
Q Consensus        19 ~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~l   53 (531)
                      +..+..++..|..+++.. ....+++..|..+++++
T Consensus        31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~   66 (617)
T PF15070_consen   31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM   66 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333455555666666555 33445666666666554

>KOG4643|consensus

Probab=96.73  E-value=1.3  Score=48.55  Aligned_cols=89  Identities=13%  Similarity=0.175  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        131 DIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKL  210 (531)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l  210 (531)
                      ..+..-..+.......+..+|+.+++.+.....++..+...+..++.++......+.....+++.+...+..++.+-..+
T Consensus       470 ~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L  549 (1195)
T KOG4643|consen  470 DQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL  549 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33344444445555555666666666666666666666666666666666655555555555555555555555555555


Q ss_pred             HHHHHHHHH
Q psy14063        211 AREVSEKRE  219 (531)
Q Consensus       211 ~~~l~~~~~  219 (531)
                      ..+|..+..
T Consensus       550 lkqI~~Lk~  558 (1195)
T KOG4643|consen  550 LKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHH
Confidence            555554444

>KOG0612|consensus

Probab=96.73  E-value=1.4  Score=49.22  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy14063         53 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC   89 (531)
Q Consensus        53 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   89 (531)
                      +++.++.+...++...+.++..+...+..+...++..
T Consensus       491 l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~  527 (1317)
T KOG0612|consen  491 LLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA  527 (1317)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555544444433

>KOG0980|consensus

Probab=96.72  E-value=1.2  Score=48.10  Aligned_cols=13  Identities=54%  Similarity=0.598  Sum_probs=5.0

Q ss_pred             HHHHHhhccHHHH
Q psy14063         22 VETDLKALEPELR   34 (531)
Q Consensus        22 ~e~~~~~Le~~~~   34 (531)
                      .+.++..++.+.+
T Consensus       363 ~~~ql~~le~~~~  375 (980)
T KOG0980|consen  363 YENQLLALEGELQ  375 (980)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PRK09039 hypothetical protein; Validated

Probab=96.66  E-value=0.49  Score=46.91  Aligned_cols=7  Identities=29%  Similarity=0.282  Sum_probs=2.8

Q ss_pred             HHHHHHH
Q psy14063        285 VIAAVKR  291 (531)
Q Consensus       285 ~i~~Lk~  291 (531)
                      +..+|+.
T Consensus       246 ia~~l~~  252 (343)
T PRK09039        246 LAAALIE  252 (343)
T ss_pred             HHHHHHH
Confidence            3334443

>KOG0994|consensus

Probab=96.62  E-value=1.6  Score=48.38  Aligned_cols=23  Identities=9%  Similarity=0.053  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q psy14063        203 LLDQVEKLAREVSEKRESMQTSR  225 (531)
Q Consensus       203 ~~~~l~~l~~~l~~~~~~~~~~~  225 (531)
                      ++..+...+..+.....++..+.
T Consensus      1715 Le~~y~~~~~~L~~~~aeL~~Le 1737 (1758)
T KOG0994|consen 1715 LELEYLRNEQALEDKAAELAGLE 1737 (1758)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhHH
Confidence            33333333333444444444333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.60  E-value=0.78  Score=44.48  Aligned_cols=28  Identities=21%  Similarity=0.325  Sum_probs=14.5

Q ss_pred             HHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063          9 DEERTEKLTRVQLVETDLKALEPELRKA   36 (531)
Q Consensus         9 ~~~~~~~~~~~~~~e~~~~~Le~~~~~a   36 (531)
                      +..+.+..-.++++..++..+..+..-+
T Consensus        66 ~~~lr~gVfqlddi~~qlr~~rtel~~a   93 (499)
T COG4372          66 NRNLRSGVFQLDDIRPQLRALRTELGTA   93 (499)
T ss_pred             hhhHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555544

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.56  E-value=0.82  Score=44.33  Aligned_cols=28  Identities=7%  Similarity=0.240  Sum_probs=10.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14063         65 LGEHETKVQQMEQELTANLESIKKCTDE   92 (531)
Q Consensus        65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~   92 (531)
                      +.+...++..+.+.-..+..+++.+..+
T Consensus       132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~q  159 (499)
T COG4372         132 LAKAQQELARLTKQAQDLQTRLKTLAEQ  159 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>KOG0976|consensus

Probab=96.43  E-value=1.7  Score=46.32  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=19.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14063         60 VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKS   98 (531)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   98 (531)
                      +++.+...++-....+..++...+..++.+..+++.+++
T Consensus       267 ~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq  305 (1265)
T KOG0976|consen  267 EIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ  305 (1265)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            344444444444455555555555555555555544444

>KOG0946|consensus

Probab=96.39  E-value=1.2  Score=47.48  Aligned_cols=30  Identities=13%  Similarity=0.287  Sum_probs=11.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063         67 EHETKVQQMEQELTANLESIKKCTDEMESA   96 (531)
Q Consensus        67 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (531)
                      .++.+.+.++.++........++..++..+
T Consensus       682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~L  711 (970)
T KOG0946|consen  682 ELQVENEELEEEVQDFISEHSQLKDQLDLL  711 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.37  E-value=1.3  Score=44.34  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=10.5

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14063         61 NMKNLGEHETKVQQMEQELTANLESIKK   88 (531)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (531)
                      ++..+..++.++..++..+......++.
T Consensus        64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~   91 (420)
T COG4942          64 LEKQLKSLETEIASLEAQLIETADDLKK   91 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3333333333333333333333333333

>KOG0995|consensus

Probab=96.29  E-value=1.7  Score=44.82  Aligned_cols=18  Identities=11%  Similarity=0.252  Sum_probs=8.2

Q ss_pred             HHHHHhhccHHHHHHHHH
Q psy14063         22 VETDLKALEPELRKAVNF   39 (531)
Q Consensus        22 ~e~~~~~Le~~~~~a~~~   39 (531)
                      +++....|+.++++++.|
T Consensus       264 lre~~~~L~~D~nK~~~y  281 (581)
T KOG0995|consen  264 LREKKARLQDDVNKFQAY  281 (581)
T ss_pred             HHHHHHHHHhHHHHHHHH
Confidence            344444444444444444

>KOG1003|consensus

Probab=96.29  E-value=0.7  Score=40.53  Aligned_cols=15  Identities=33%  Similarity=0.552  Sum_probs=7.1

Q ss_pred             HHHHHhhccHHHHHH
Q psy14063         22 VETDLKALEPELRKA   36 (531)
Q Consensus        22 ~e~~~~~Le~~~~~a   36 (531)
                      +...+..|+.+.+.+
T Consensus         9 lnrri~~leeele~a   23 (205)
T KOG1003|consen    9 LNRRIQLLEEELDRA   23 (205)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444555544

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.28  E-value=2.1  Score=45.85  Aligned_cols=28  Identities=29%  Similarity=0.445  Sum_probs=12.5

Q ss_pred             hhhHHHHHhHHhhhhHHHHHHHhhccHH
Q psy14063          5 YGKYDEERTEKLTRVQLVETDLKALEPE   32 (531)
Q Consensus         5 ~~~l~~~~~~~~~~~~~~e~~~~~Le~~   32 (531)
                      +..|.++......++..+++.+..|+.+
T Consensus        38 v~~L~eEk~~~~~~V~eLE~sL~eLk~q   65 (617)
T PF15070_consen   38 VRTLKEEKEHDISRVQELERSLSELKNQ   65 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444444444444433

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.24  E-value=2.4  Score=46.26  Aligned_cols=25  Identities=20%  Similarity=0.093  Sum_probs=12.1

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHH
Q psy14063         58 RYVNMKNLGEHETKVQQMEQELTAN   82 (531)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~l~~~   82 (531)
                      ....+.++..++.++.....++..+
T Consensus       264 r~~Le~ei~~le~e~~e~~~~l~~l  288 (650)
T TIGR03185       264 REQLERQLKEIEAARKANRAQLREL  288 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4674|consensus

Probab=96.22  E-value=3.9  Score=48.46  Aligned_cols=76  Identities=13%  Similarity=0.197  Sum_probs=32.7

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAK  202 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~  202 (531)
                      ...+..+..+++...-+++++...+.....++......+.+....+......+..+..++......+..++..+..
T Consensus       390 ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~  465 (1822)
T KOG4674|consen  390 YSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELES  465 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555555444444444444444433333333333333333333333333333333333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.21  E-value=0.07  Score=52.06  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14063        146 KETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSR  225 (531)
Q Consensus       146 ~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~  225 (531)
                      ....++..++.+...+.+++..++.+..++..++..++.+...+..+........+....++.....+...+..++....
T Consensus        47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~  126 (314)
T PF04111_consen   47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS  126 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444555555555555444444455555444444444444444444443322


Q ss_pred             hhHHHHHHHHHHHhh--cCCCCccc-----ccccccccCcchHHHHHHHhc
Q psy14063        226 SNNRLIDFVMQLKSE--NRVSGILG-----RLGDLGGIDQKYDIAVSTACG  269 (531)
Q Consensus       226 ~~~~~l~~l~~~~~~--~~~~gv~g-----~l~~li~v~~~y~~Aie~~lg  269 (531)
                      ...+.|+..-=....  -+..|.+|     ++|.+-+++-.| .-|.+|+|
T Consensus       127 ~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W-~EINAA~G  176 (314)
T PF04111_consen  127 NQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEW-NEINAAWG  176 (314)
T ss_dssp             HHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---H-HHHHHHHH
T ss_pred             HHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCCh-HHHHHHHH
Confidence            221111110000000  01234444     456665566667 35677777

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1003|consensus

Probab=95.97  E-value=1  Score=39.55  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        128 FECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQV  207 (531)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l  207 (531)
                      .++......++....+.......+..+...+......+..+...-+.+.+..+.....+..+..++.+....-......+
T Consensus        88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsV  167 (205)
T KOG1003|consen   88 RKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRV  167 (205)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            33334444444444444444444444444444444444444333333333334444444444433333333333333344


Q ss_pred             HHHHHHHHHHHHHH
Q psy14063        208 EKLAREVSEKRESM  221 (531)
Q Consensus       208 ~~l~~~l~~~~~~~  221 (531)
                      ..+...+.++...+
T Consensus       168 akLeke~DdlE~kl  181 (205)
T KOG1003|consen  168 AKLEKERDDLEEKL  181 (205)
T ss_pred             HHHcccHHHHHHhh
Confidence            44444444443333

>KOG0612|consensus

Probab=95.92  E-value=4  Score=45.95  Aligned_cols=28  Identities=18%  Similarity=0.310  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        148 TKKLADLEANLEKVQTTLTERKTLCEEL  175 (531)
Q Consensus       148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~l  175 (531)
                      ...+..++.++..++........++..+
T Consensus       622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~  649 (1317)
T KOG0612|consen  622 SEIIAELKEEISSLEETLKAGKKELLKV  649 (1317)
T ss_pred             HHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence            3333444444444444444444333333

>KOG0978|consensus

Probab=95.90  E-value=3.1  Score=44.53  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        133 AKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAR  212 (531)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~  212 (531)
                      +..+...+.........++......++.......+....+..++...+..+..+.+++........++.........++.
T Consensus       529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE  608 (698)
T KOG0978|consen  529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE  608 (698)
T ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444444444445555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHh
Q psy14063        213 EVSEKRESMQT  223 (531)
Q Consensus       213 ~l~~~~~~~~~  223 (531)
                      ++..++..+..
T Consensus       609 E~e~L~~kle~  619 (698)
T KOG0978|consen  609 ELERLKRKLER  619 (698)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.86  E-value=2.1  Score=42.78  Aligned_cols=27  Identities=4%  Similarity=0.095  Sum_probs=15.0

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063         57 ERYVNMKNLGEHETKVQQMEQELTANL   83 (531)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (531)
                      .+...-..+..++...+.+.+.+.+..
T Consensus       265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~  291 (622)
T COG5185         265 FVHIINTDIANLKTQNDNLYEKIQEAM  291 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555666666666655555543

>KOG4673|consensus

Probab=95.81  E-value=3  Score=43.72  Aligned_cols=22  Identities=14%  Similarity=0.326  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q psy14063        202 KLLDQVEKLAREVSEKRESMQT  223 (531)
Q Consensus       202 ~~~~~l~~l~~~l~~~~~~~~~  223 (531)
                      +++.+-..+-.++.+++..+..
T Consensus       577 ear~~~~~lvqqv~dLR~~L~~  598 (961)
T KOG4673|consen  577 EARERESMLVQQVEDLRQTLSK  598 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555566655553

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.80  E-value=2.2  Score=42.06  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=18.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063         63 KNLGEHETKVQQMEQELTANLESIKKCTDEMESA   96 (531)
Q Consensus        63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (531)
                      ++..-...-+..+...+..+......+...++.+
T Consensus       142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l  175 (325)
T PF08317_consen  142 WRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQL  175 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555556555555555555444443

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=95.77  E-value=1.7  Score=40.40  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             hhHHHHHhHHhhhhHHHHHHHhhccHHHHHH-HHHHH----HHHHHHHHHHHHHH-----HHHHHHhhhhhhHHHHHHHH
Q psy14063          6 GKYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLE----LENCVQRKHNEIYQ-----YERYVNMKNLGEHETKVQQM   75 (531)
Q Consensus         6 ~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a-~~~~~----~~~~l~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~   75 (531)
                      +.++-.+...+++++....+++.||.+.+.+ ..|..    .-.+|..+..+|..     .-|++.......+......+
T Consensus         3 e~~dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~A   82 (239)
T PF05276_consen    3 EELDPRVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKA   82 (239)
T ss_pred             cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999988 44543    33445555444421     12444444444444444443


Q ss_pred             HHHHHH
Q psy14063         76 EQELTA   81 (531)
Q Consensus        76 ~~~l~~   81 (531)
                      -.....
T Consensus        83 a~~yer   88 (239)
T PF05276_consen   83 ALQYER   88 (239)
T ss_pred             HHHHHH
Confidence            333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.70  E-value=2.4  Score=41.79  Aligned_cols=16  Identities=13%  Similarity=0.318  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy14063        153 DLEANLEKVQTTLTER  168 (531)
Q Consensus       153 ~~~~~i~~~e~~l~~~  168 (531)
                      .++.++......++..
T Consensus       213 ~lr~eL~~~~~~i~~~  228 (325)
T PF08317_consen  213 ALRQELAEQKEEIEAK  228 (325)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.62  E-value=2.2  Score=40.82  Aligned_cols=26  Identities=23%  Similarity=0.193  Sum_probs=10.9

Q ss_pred             HHHHhhccHHHHHH-HHHHHHHHHHHH
Q psy14063         23 ETDLKALEPELRKA-VNFLELENCVQR   48 (531)
Q Consensus        23 e~~~~~Le~~~~~a-~~~~~~~~~l~~   48 (531)
                      ..+...|+.+...+ ....+++.++..
T Consensus        96 ~~~~~~le~~L~~~~e~v~qLrHeL~~  122 (306)
T PF04849_consen   96 SERNEALEEQLGAALEQVEQLRHELSM  122 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444 333344444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4643|consensus

Probab=95.56  E-value=4.8  Score=44.29  Aligned_cols=30  Identities=10%  Similarity=0.062  Sum_probs=14.5

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEA  156 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (531)
                      ..++..+...+..+..+...+..+|..+..
T Consensus       529 ~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  529 SNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            444444444444455555555555544444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.53  E-value=2.1  Score=40.03  Aligned_cols=37  Identities=11%  Similarity=0.133  Sum_probs=14.6

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14063         58 RYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEME   94 (531)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (531)
                      +.+...++...+.+++..+.++..++.+|..+...|.
T Consensus        61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~   97 (265)
T COG3883          61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV   97 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344444444444444444444333333

>KOG0946|consensus

Probab=95.52  E-value=2.8  Score=44.86  Aligned_cols=26  Identities=8%  Similarity=0.185  Sum_probs=9.7

Q ss_pred             hhHHHHHhHHhhhhHHHHHHHhhccH
Q psy14063          6 GKYDEERTEKLTRVQLVETDLKALEP   31 (531)
Q Consensus         6 ~~l~~~~~~~~~~~~~~e~~~~~Le~   31 (531)
                      ++++..+.....-+..+..+...++.
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ  678 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQ  678 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33333333333333333333333333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.38  E-value=2.9  Score=40.69  Aligned_cols=33  Identities=18%  Similarity=0.117  Sum_probs=16.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14063         63 KNLGEHETKVQQMEQELTANLESIKKCTDEMES   95 (531)
Q Consensus        63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (531)
                      ++..-++.-+..+...+..+......+.+..+.
T Consensus       137 WR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~  169 (312)
T smart00787      137 WRMKLLEGLKEGLDENLEGLKEDYKLLMKELEL  169 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555544444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG4673|consensus

Probab=95.17  E-value=5  Score=42.17  Aligned_cols=28  Identities=11%  Similarity=0.055  Sum_probs=13.4

Q ss_pred             HHHhhccHHHHHH-HHHHHHHHHHHHHHH
Q psy14063         24 TDLKALEPELRKA-VNFLELENCVQRKHN   51 (531)
Q Consensus        24 ~~~~~Le~~~~~a-~~~~~~~~~l~~l~~   51 (531)
                      ..+..|++.+..+ +++-.++.+++.++.
T Consensus       409 QRva~lEkKvqa~~kERDalr~e~kslk~  437 (961)
T KOG4673|consen  409 QRVATLEKKVQALTKERDALRREQKSLKK  437 (961)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3445555555544 444444444444443

>KOG4360|consensus

Probab=95.00  E-value=3.6  Score=41.71  Aligned_cols=35  Identities=17%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             hhhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHH
Q psy14063         17 TRVQLVETDLKALEPELRKA-VNFLELENCVQRKHN   51 (531)
Q Consensus        17 ~~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~   51 (531)
                      .+-+.+..+...|+.++++. ..+..+.-++.....
T Consensus        90 k~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~e  125 (596)
T KOG4360|consen   90 KANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDE  125 (596)
T ss_pred             hhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhh
Confidence            33444666666777777666 555555555544433

>KOG0999|consensus

Probab=94.91  E-value=5.2  Score=40.94  Aligned_cols=29  Identities=14%  Similarity=0.195  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063         75 MEQELTANLESIKKCTDEMESAKSELKTV  103 (531)
Q Consensus        75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (531)
                      +..+|.++++.++++...+...+++.+.+
T Consensus       105 yl~kI~eleneLKq~r~el~~~q~E~erl  133 (772)
T KOG0999|consen  105 YLQKILELENELKQLRQELTNVQEENERL  133 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555444444444433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.85  E-value=7.6  Score=42.61  Aligned_cols=44  Identities=27%  Similarity=0.271  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy14063        477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEY  520 (531)
Q Consensus       477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  520 (531)
                      ++..++.+...++..+..+..++..+..++.+....+..++.++
T Consensus       597 elE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL  640 (769)
T PF05911_consen  597 ELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSEL  640 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444

The function of this family is unknown.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=94.84  E-value=5.4  Score=40.86  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        187 AESRARLADLTREEAKLLDQVEKLAREVSEKRE  219 (531)
Q Consensus       187 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~  219 (531)
                      ..++..++.+...+..++.........+..++.
T Consensus       378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk  410 (570)
T COG4477         378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK  410 (570)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333444444444444444444444444444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.61  E-value=8  Score=42.41  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14063         57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELK  101 (531)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  101 (531)
                      +......++..++++++.+...-..+.++++.+...-+.+...++
T Consensus       573 ~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~  617 (717)
T PF10168_consen  573 QKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD  617 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555444444444444444444444444333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.61  E-value=4.8  Score=39.22  Aligned_cols=16  Identities=31%  Similarity=0.459  Sum_probs=6.7

Q ss_pred             HHHHHHhhccHHHHHH
Q psy14063         21 LVETDLKALEPELRKA   36 (531)
Q Consensus        21 ~~e~~~~~Le~~~~~a   36 (531)
                      .+..+...+..+..++
T Consensus        54 ~l~kek~~l~~E~~k~   69 (309)
T PF09728_consen   54 QLQKEKDQLQSELSKA   69 (309)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.56  E-value=5  Score=42.33  Aligned_cols=6  Identities=0%  Similarity=-0.280  Sum_probs=2.3

Q ss_pred             HHHHhH
Q psy14063        119 WSVFSA  124 (531)
Q Consensus       119 ~~~~~~  124 (531)
                      .++.++
T Consensus       254 ~~l~~l  259 (498)
T TIGR03007       254 GRIEAL  259 (498)
T ss_pred             HHHHHH
Confidence            333333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.55  E-value=3.1  Score=36.71  Aligned_cols=15  Identities=13%  Similarity=0.233  Sum_probs=6.5

Q ss_pred             HHHHHhhccHHHHHH
Q psy14063         22 VETDLKALEPELRKA   36 (531)
Q Consensus        22 ~e~~~~~Le~~~~~a   36 (531)
                      +..+...|...++.+
T Consensus        20 L~~en~kL~~~ve~~   34 (193)
T PF14662_consen   20 LADENAKLQRSVETA   34 (193)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444444

>TIGR00634 recN DNA repair protein RecN

Probab=94.40  E-value=8.6  Score=41.22  Aligned_cols=30  Identities=17%  Similarity=0.071  Sum_probs=11.6

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063         55 QYERYVNMKNLGEHETKVQQMEQELTANLE   84 (531)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (531)
                      |..+......+..+.........++..+.-
T Consensus       167 ~~~~~~~~~~L~~l~~~~~~~~~eld~L~~  196 (563)
T TIGR00634       167 YQAWLKARQQLKDRQQKEQELAQRLDFLQF  196 (563)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333333444433333333333333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00634 recN DNA repair protein RecN

Probab=94.39  E-value=8.6  Score=41.20  Aligned_cols=23  Identities=13%  Similarity=0.108  Sum_probs=11.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHH
Q psy14063         62 MKNLGEHETKVQQMEQELTANLE   84 (531)
Q Consensus        62 ~~~~~~~~~~~~~~~~~l~~~~~   84 (531)
                      .........+++.++-++.+++.
T Consensus       181 ~~~~~~~~~eld~L~~ql~ELe~  203 (563)
T TIGR00634       181 QQKEQELAQRLDFLQFQLEELEE  203 (563)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHh
Confidence            33344444555555555555544

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.24  E-value=4.6  Score=37.48  Aligned_cols=18  Identities=17%  Similarity=0.259  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy14063        478 LEVKEKRLASLETELRIL  495 (531)
Q Consensus       478 l~~l~~~~~~l~~~~~~~  495 (531)
                      ++.|...=.+|...+.++
T Consensus       280 ~dQLK~qNQEL~ski~EL  297 (307)
T PF10481_consen  280 LDQLKAQNQELRSKINEL  297 (307)
T ss_pred             HHHHHHHhHHHHHHHHHH
Confidence            333433333444443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0962|consensus

Probab=94.22  E-value=13  Score=42.68  Aligned_cols=39  Identities=13%  Similarity=0.294  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        184 SEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ  222 (531)
Q Consensus       184 ~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~  222 (531)
                      ++...+......+..+...+.....++..++..++.++.
T Consensus      1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred             HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            333344444444444444444444444444444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.06  E-value=1.3  Score=43.36  Aligned_cols=78  Identities=24%  Similarity=0.342  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14063        149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRS  226 (531)
Q Consensus       149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~  226 (531)
                      ..+..+..++..++.+...+..++..++.+...+..++..++.+...+..+....-.....+..++.........+..
T Consensus        43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~  120 (314)
T PF04111_consen   43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKN  120 (314)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555555555555444444444444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.01  E-value=1.2  Score=40.37  Aligned_cols=19  Identities=21%  Similarity=0.169  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy14063        197 TREEAKLLDQVEKLAREVS  215 (531)
Q Consensus       197 ~~~~~~~~~~l~~l~~~l~  215 (531)
                      .+++..++-++..+..++.
T Consensus       150 ~DE~~~L~l~~~~~e~k~~  168 (194)
T PF08614_consen  150 QDELQALQLQLNMLEEKLR  168 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.83  E-value=8.1  Score=38.82  Aligned_cols=84  Identities=14%  Similarity=0.209  Sum_probs=39.9

Q ss_pred             hhhHHHHHHHhhccHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy14063         17 TRVQLVETDLKALEPELRKAVNFLELENCVQ----RKHNE--IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCT   90 (531)
Q Consensus        17 ~~~~~~e~~~~~Le~~~~~a~~~~~~~~~l~----~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   90 (531)
                      +.+..++.+...|...+.+|.+..+..+.+.    .++.-  .+...+...+.+....-..++.+..++..-+++++.+.
T Consensus       271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~  350 (622)
T COG5185         271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ  350 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666677777666655544333333    33211  12333344444444444444444444444444444444


Q ss_pred             HHHHHHHHHH
Q psy14063         91 DEMESAKSEL  100 (531)
Q Consensus        91 ~~~~~~~~~~  100 (531)
                      ..++.+...+
T Consensus       351 ~~~d~L~~q~  360 (622)
T COG5185         351 SNIDELHKQL  360 (622)
T ss_pred             hhHHHHHHHH
Confidence            4444444433

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=93.77  E-value=6.3  Score=37.33  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=25.8

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063         57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV  103 (531)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (531)
                      .+..+-.++..++.+-..+..++..-....+.++.+++++...+..+
T Consensus        57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaA  103 (305)
T PF14915_consen   57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAA  103 (305)
T ss_pred             HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555556666666666655544

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.63  E-value=9.6  Score=39.04  Aligned_cols=7  Identities=14%  Similarity=0.325  Sum_probs=2.9

Q ss_pred             ccccccc
Q psy14063        246 ILGRLGD  252 (531)
Q Consensus       246 v~g~l~~  252 (531)
                      +-|.+..
T Consensus       278 ~dG~V~~  284 (423)
T TIGR01843       278 VDGTVQS  284 (423)
T ss_pred             CCcEEEE
Confidence            3344443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0243|consensus

Probab=93.56  E-value=8.1  Score=43.22  Aligned_cols=12  Identities=17%  Similarity=0.628  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHH
Q psy14063         70 TKVQQMEQELTA   81 (531)
Q Consensus        70 ~~~~~~~~~l~~   81 (531)
                      .+++.++..+..
T Consensus       411 ~EIerLK~dl~A  422 (1041)
T KOG0243|consen  411 EEIERLKRDLAA  422 (1041)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>KOG0249|consensus

Probab=93.51  E-value=6.5  Score=41.63  Aligned_cols=19  Identities=16%  Similarity=0.216  Sum_probs=7.9

Q ss_pred             HhhhhhhHHHHHHHHHHHH
Q psy14063         61 NMKNLGEHETKVQQMEQEL   79 (531)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~l   79 (531)
                      ++.+...+...++-++.++
T Consensus       110 ~eekn~slqerLelaE~~l  128 (916)
T KOG0249|consen  110 NEEKNRSLQERLELAEPKL  128 (916)
T ss_pred             hHHhhhhhhHHHHHhhHhh
Confidence            3444444444444444433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.41  E-value=2.9  Score=37.43  Aligned_cols=97  Identities=19%  Similarity=0.284  Sum_probs=59.8

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ  206 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~  206 (531)
                      ..++..++..+.....++...-..|-.++..+......+...+..+..+.........++.....++.....+..-++..
T Consensus         9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek   88 (202)
T PF06818_consen    9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK   88 (202)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence            55556666666666666666666666666666666666666666666666666666666666666666666665556666


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy14063        207 VEKLAREVSEKRESMQT  223 (531)
Q Consensus       207 l~~l~~~l~~~~~~~~~  223 (531)
                      +..+..++..++..+..
T Consensus        89 l~~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   89 LGQLEAELAELREELAC  105 (202)
T ss_pred             hhhhHHHHHHHHHHHHh
Confidence            66666666555555443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.23  E-value=8.8  Score=37.42  Aligned_cols=8  Identities=25%  Similarity=0.530  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q psy14063        208 EKLAREVS  215 (531)
Q Consensus       208 ~~l~~~l~  215 (531)
                      .++..++.
T Consensus       249 ~e~~~~I~  256 (312)
T smart00787      249 SELNTEIA  256 (312)
T ss_pred             HHHHHHHH
Confidence            33333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.15  E-value=0.026  Score=63.00  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        182 MESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       182 ~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~  220 (531)
                      ++.+..++...+.++...+.........+...+..++..
T Consensus       466 LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e  504 (859)
T PF01576_consen  466 LEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE  504 (859)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333334333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.10  E-value=0.026  Score=61.96  Aligned_cols=38  Identities=11%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063         63 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL  100 (531)
Q Consensus        63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  100 (531)
                      .+++.++.++..+...+..++..+..+..++..++.+.
T Consensus       246 ~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~  283 (713)
T PF05622_consen  246 AQLRRLREELERLEEQRDDLKIELEELEKEIDELRQEN  283 (713)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333334444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK11281 hypothetical protein; Provisional

Probab=92.81  E-value=23  Score=40.99  Aligned_cols=68  Identities=9%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             hhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy14063         18 RVQLVETDLKALEPELRKA-VNFLELENCVQRKHNE--------IYQYERYVNMKNLGEHETKVQQMEQELTANLES   85 (531)
Q Consensus        18 ~~~~~e~~~~~Le~~~~~a-~~~~~~~~~l~~l~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (531)
                      +.+..+++.+.|++..+.| .+..+...++..++..        ....-..+.+..+......+...++.+......
T Consensus        74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~Nsq  150 (1113)
T PRK11281         74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQ  150 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333455555566666665 4444444445544331        111112334444444444444444444444443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.77  E-value=23  Score=40.89  Aligned_cols=27  Identities=11%  Similarity=0.166  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        195 DLTREEAKLLDQVEKLAREVSEKRESM  221 (531)
Q Consensus       195 ~l~~~~~~~~~~l~~l~~~l~~~~~~~  221 (531)
                      .+..+....+..+.++.+..+.++.++
T Consensus       283 ~l~~~~~~~~~~l~~~~q~~~~i~eQi  309 (1109)
T PRK10929        283 LIASQQRQAASQTLQVRQALNTLREQS  309 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444444443

>KOG0978|consensus

Probab=92.73  E-value=17  Score=39.23  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQ-------TTLTERKTLCEELTTRVPAMESEIAESRARLADLTRE  199 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e-------~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~  199 (531)
                      ..+...+...+..+..........|..++.....+.       .++......++..+....++...+..++.++......
T Consensus       502 ~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~  581 (698)
T KOG0978|consen  502 REEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAK  581 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443333333333333433333333333       3333333344444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063        200 EAKLLDQVEKLAREVSEKRESMQTS  224 (531)
Q Consensus       200 ~~~~~~~l~~l~~~l~~~~~~~~~~  224 (531)
                      +.+++..+.....++.........+
T Consensus       582 le~i~~~~~e~~~ele~~~~k~~rl  606 (698)
T KOG0978|consen  582 LEQIQEQYAELELELEIEKFKRKRL  606 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.62  E-value=7.7  Score=35.93  Aligned_cols=64  Identities=11%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        154 LEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEK  217 (531)
Q Consensus       154 ~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~  217 (531)
                      +..+++.+..+-....+++..+...+..++..+.....+.......+..+..++..+..+++++
T Consensus        37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~  100 (230)
T PF10146_consen   37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL  100 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333443333333333333333333334444444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK11281 hypothetical protein; Provisional

Probab=92.51  E-value=25  Score=40.69  Aligned_cols=18  Identities=11%  Similarity=0.309  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy14063        204 LDQVEKLAREVSEKRESM  221 (531)
Q Consensus       204 ~~~l~~l~~~l~~~~~~~  221 (531)
                      +..++++.+..+.++.++
T Consensus       312 ~~~l~~~~q~~~~i~eqi  329 (1113)
T PRK11281        312 KNWLDRLTQSERNIKEQI  329 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>KOG4360|consensus

Probab=91.86  E-value=14  Score=37.69  Aligned_cols=15  Identities=7%  Similarity=-0.272  Sum_probs=8.5

Q ss_pred             HHHHHHHHhhhhhhH
Q psy14063         54 YQYERYVNMKNLGEH   68 (531)
Q Consensus        54 ~~~~~~~~~~~~~~~   68 (531)
                      +|-.+..+...+...
T Consensus       109 ~~d~vvql~hels~k  123 (596)
T KOG4360|consen  109 PWDRVVQLGHELSRK  123 (596)
T ss_pred             hHHHHHHhhhhhhhh
Confidence            566666666554443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.80  E-value=13  Score=36.02  Aligned_cols=15  Identities=13%  Similarity=0.277  Sum_probs=5.4

Q ss_pred             HHHHHHHhhccHHHH
Q psy14063         20 QLVETDLKALEPELR   34 (531)
Q Consensus        20 ~~~e~~~~~Le~~~~   34 (531)
                      ..+-++++.=..+.+
T Consensus        12 ~IL~~eLe~cq~ErD   26 (319)
T PF09789_consen   12 LILSQELEKCQSERD   26 (319)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.42  E-value=7  Score=32.07  Aligned_cols=10  Identities=40%  Similarity=0.634  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q psy14063        206 QVEKLAREVS  215 (531)
Q Consensus       206 ~l~~l~~~l~  215 (531)
                      .+++++..+.
T Consensus        97 ~veEL~~Dv~  106 (120)
T PF12325_consen   97 EVEELRADVQ  106 (120)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.41  E-value=11  Score=34.25  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        141 LSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAES-RARLADLTREEAKLLDQVEKLAREVSE  216 (531)
Q Consensus       141 ~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~~~l~~l~~~l~~  216 (531)
                      +.++...+.++..++-+.+.++..+..++.+..++.......-..+.+- .-+---++..+..+...++....++.+
T Consensus        92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e  168 (201)
T PF13851_consen   92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE  168 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444443333333332221 111122344444444444444444443

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=91.36  E-value=17  Score=36.27  Aligned_cols=74  Identities=23%  Similarity=0.341  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        148 TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM  221 (531)
Q Consensus       148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~  221 (531)
                      ...+..++..+...+..+...+.++..++..+..+..++.....+...++.+......++.....-+..+....
T Consensus       220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~  293 (344)
T PF12777_consen  220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK  293 (344)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence            44444444444444444444444444444444444444444444444444444444444444444443333333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK10869 recombination and repair protein; Provisional

Probab=91.33  E-value=23  Score=37.83  Aligned_cols=29  Identities=10%  Similarity=0.035  Sum_probs=11.6

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy14063         55 QYERYVNMKNLGEHETKVQQMEQELTANL   83 (531)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (531)
                      |..+....+++..+........+++..+.
T Consensus       163 y~~~~~~~~~l~~l~~~~~~~~~~~d~l~  191 (553)
T PRK10869        163 YQLWHQSCRDLAQHQQQSQERAARKQLLQ  191 (553)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33444444444444444333333333333

>PF13514 AAA_27: AAA domain

Probab=91.18  E-value=36  Score=39.89  Aligned_cols=32  Identities=19%  Similarity=0.410  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14063         71 KVQQMEQELTANLESIKKCTDEMESAKSELKT  102 (531)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  102 (531)
                      .+..+...+..++..+..+...+..+...+..
T Consensus       802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~  833 (1111)
T PF13514_consen  802 ERERLQEQLEELEEELEQAEEELEELEAELAE  833 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.18  E-value=22  Score=37.32  Aligned_cols=10  Identities=20%  Similarity=0.315  Sum_probs=4.7

Q ss_pred             CcEEecchHH
Q psy14063        272 NYIVTETVEA  281 (531)
Q Consensus       272 ~~ivv~~~~~  281 (531)
                      +-+.|.++..
T Consensus       546 Dvi~v~~~sG  555 (652)
T COG2433         546 DVILVEDPSG  555 (652)
T ss_pred             cEEEEEcCCC
Confidence            4455554433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.87  E-value=6  Score=35.95  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        196 LTREEAKLLDQVEKLAREVSEKRESMQ  222 (531)
Q Consensus       196 l~~~~~~~~~~l~~l~~~l~~~~~~~~  222 (531)
                      +..+..++..++..++.+.+.++.++.
T Consensus       137 L~~~n~~L~~~l~~~~~~~~~l~~~~~  163 (206)
T PRK10884        137 LKEENQKLKNQLIVAQKKVDAANLQLD  163 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.69  E-value=36  Score=38.96  Aligned_cols=6  Identities=0%  Similarity=0.113  Sum_probs=2.6

Q ss_pred             ccCcch
Q psy14063        255 GIDQKY  260 (531)
Q Consensus       255 ~v~~~y  260 (531)
                      .+++.+
T Consensus       466 ~l~~~~  471 (908)
T COG0419         466 ELPEEH  471 (908)
T ss_pred             CCCcHH
Confidence            344444

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.66  E-value=15  Score=35.52  Aligned_cols=8  Identities=38%  Similarity=0.447  Sum_probs=4.6

Q ss_pred             HHHHHHhc
Q psy14063        262 IAVSTACG  269 (531)
Q Consensus       262 ~Aie~~lg  269 (531)
                      ..|.++||
T Consensus       195 ~~isaALg  202 (302)
T PF10186_consen  195 EEISAALG  202 (302)
T ss_pred             HHHHHHHH
Confidence            35566666

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.54  E-value=6.8  Score=35.60  Aligned_cols=39  Identities=13%  Similarity=0.157  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        182 MESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       182 ~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~  220 (531)
                      ....+.+++.+..+++.++..++.++..++.+++.++..
T Consensus       130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555555555555555555555555543

>KOG1937|consensus

Probab=90.30  E-value=21  Score=35.78  Aligned_cols=35  Identities=14%  Similarity=0.322  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        183 ESEIAESRARLADLTREEAKLLDQVEKLAREVSEK  217 (531)
Q Consensus       183 ~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~  217 (531)
                      ...+.++-..+.+....+..+..+-.+++.+++..
T Consensus       388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~  422 (521)
T KOG1937|consen  388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE  422 (521)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444333333

>KOG0999|consensus

Probab=90.28  E-value=24  Score=36.35  Aligned_cols=20  Identities=15%  Similarity=0.101  Sum_probs=7.7

Q ss_pred             HHhhhhhhHHHHHHHHHHHH
Q psy14063         60 VNMKNLGEHETKVQQMEQEL   79 (531)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~l   79 (531)
                      +.+..+.....+++..++-+
T Consensus        54 Eleaeyd~~R~Eldqtkeal   73 (772)
T KOG0999|consen   54 ELEAEYDLARTELDQTKEAL   73 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444333333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=90.18  E-value=21  Score=35.55  Aligned_cols=9  Identities=33%  Similarity=0.232  Sum_probs=4.3

Q ss_pred             HHHHHHHHH
Q psy14063         41 ELENCVQRK   49 (531)
Q Consensus        41 ~~~~~l~~l   49 (531)
                      +|+-++.+.
T Consensus       195 eWklEvERV  203 (359)
T PF10498_consen  195 EWKLEVERV  203 (359)
T ss_pred             HHHHHHHHH
Confidence            455454444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.09  E-value=8.1  Score=36.51  Aligned_cols=7  Identities=43%  Similarity=0.823  Sum_probs=3.6

Q ss_pred             CCceeEE
Q psy14063        294 VGRVNVI  300 (531)
Q Consensus       294 ~gr~tfl  300 (531)
                      +||+.++
T Consensus       189 lGr~~l~  195 (251)
T PF11932_consen  189 LGRVALY  195 (251)
T ss_pred             ecchhhe
Confidence            4655543

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.74  E-value=34  Score=37.28  Aligned_cols=10  Identities=50%  Similarity=0.674  Sum_probs=5.8

Q ss_pred             cchHHHHHHH
Q psy14063        258 QKYDIAVSTA  267 (531)
Q Consensus       258 ~~y~~Aie~~  267 (531)
                      -+|..|+.-+
T Consensus       359 ~Ky~vav~Ev  368 (717)
T PF09730_consen  359 CKYKVAVSEV  368 (717)
T ss_pred             HHHHHHHHHH
Confidence            3566666554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0962|consensus

Probab=88.96  E-value=51  Score=38.22  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=10.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy14063         63 KNLGEHETKVQQMEQELTANLESIKKC   89 (531)
Q Consensus        63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~   89 (531)
                      .++...+.+..+++.++....+++..+
T Consensus       230 ~ki~~~ke~v~e~e~e~~~~~~~i~ei  256 (1294)
T KOG0962|consen  230 RKIEKSKEEVSELENELGPIEAKIEEI  256 (1294)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            333333333333333333333333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=88.94  E-value=0.12  Score=56.83  Aligned_cols=38  Identities=16%  Similarity=0.271  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14063         66 GEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTV  103 (531)
Q Consensus        66 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (531)
                      ..++.+++.++.++...+.........++.+..++..+
T Consensus       242 ~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L  279 (713)
T PF05622_consen  242 ADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDEL  279 (713)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333333444444444443333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK12704 phosphodiesterase; Provisional

Probab=88.85  E-value=34  Score=36.10  Aligned_cols=9  Identities=33%  Similarity=0.209  Sum_probs=6.9

Q ss_pred             HHHHHHHhc
Q psy14063        261 DIAVSTACG  269 (531)
Q Consensus       261 ~~Aie~~lg  269 (531)
                      -.++|++.|
T Consensus       233 ir~~e~~tg  241 (520)
T PRK12704        233 IRALETLTG  241 (520)
T ss_pred             HHHHHHHhC
Confidence            358888888

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=88.54  E-value=36  Score=35.89  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=10.7

Q ss_pred             HhHHhhhhHHHHHHHhhccHHHH
Q psy14063         12 RTEKLTRVQLVETDLKALEPELR   34 (531)
Q Consensus        12 ~~~~~~~~~~~e~~~~~Le~~~~   34 (531)
                      +...-..++.+.+++..++....
T Consensus       159 ~~~~y~~w~~~~~~l~~~~~~~~  181 (557)
T COG0497         159 YQEAYQAWKQARRELEDLQEKER  181 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444445555544444443

>KOG2751|consensus

Probab=88.40  E-value=21  Score=35.74  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        160 KVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM  221 (531)
Q Consensus       160 ~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~  221 (531)
                      .+...+..++.+-.++...+.+++.+-.++.++....+++......+.-+.+.++..+..+.
T Consensus       194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~  255 (447)
T KOG2751|consen  194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI  255 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence            33333444444444444444444444444545555555555544444444444444444443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.37  E-value=19  Score=32.63  Aligned_cols=71  Identities=21%  Similarity=0.312  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTRE--------EAKLLDQVEKLAREVSEKRESMQ  222 (531)
Q Consensus       152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~--------~~~~~~~l~~l~~~l~~~~~~~~  222 (531)
                      ..++.++...+..+..+.-+.+.+...+..++.+..++...+...-.+        .--++..+..+...+.....++.
T Consensus        89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen   89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444443332222        22234444444444444444443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.11  E-value=8.7  Score=34.50  Aligned_cols=43  Identities=30%  Similarity=0.386  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        163 TTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLD  205 (531)
Q Consensus       163 ~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~  205 (531)
                      .++++...+..++-..+..++.+++..+.++..++.+.+.++.
T Consensus       142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE  184 (290)
T COG4026         142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE  184 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=87.89  E-value=28  Score=33.88  Aligned_cols=19  Identities=16%  Similarity=0.359  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy14063        203 LLDQVEKLAREVSEKRESM  221 (531)
Q Consensus       203 ~~~~l~~l~~~l~~~~~~~  221 (531)
                      +..++.+++.+..-+++.+
T Consensus       201 L~erl~q~qeE~~l~k~~i  219 (319)
T PF09789_consen  201 LKERLKQLQEEKELLKQTI  219 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444333333

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=87.88  E-value=19  Score=33.71  Aligned_cols=36  Identities=11%  Similarity=0.250  Sum_probs=16.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14063         64 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKSE   99 (531)
Q Consensus        64 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   99 (531)
                      -++.++.++.+.++++.+-+.+|.++..++-.+++.
T Consensus        69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED  104 (305)
T PF15290_consen   69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRED  104 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            344445555544444444444444444444444433

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.75  E-value=60  Score=37.59  Aligned_cols=28  Identities=11%  Similarity=-0.066  Sum_probs=13.0

Q ss_pred             HHHHHHhhccHHHHHH-HHHHHHHHHHHH
Q psy14063         21 LVETDLKALEPELRKA-VNFLELENCVQR   48 (531)
Q Consensus        21 ~~e~~~~~Le~~~~~a-~~~~~~~~~l~~   48 (531)
                      ....+.+.+++..+.+ .+..++++++..
T Consensus        62 ~~~~~~~~~~~~i~~ap~~~~~~~~~l~~   90 (1109)
T PRK10929         62 GSLERAKQYQQVIDNFPKLSAELRQQLNN   90 (1109)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            3344445555555554 333444444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=87.73  E-value=29  Score=33.90  Aligned_cols=14  Identities=21%  Similarity=0.247  Sum_probs=5.6

Q ss_pred             HHHHHHHHhHHHHH
Q psy14063         81 ANLESIKKCTDEME   94 (531)
Q Consensus        81 ~~~~~~~~~~~~~~   94 (531)
                      .+..+++.+...++
T Consensus       139 ~L~eKlK~l~eQye  152 (309)
T PF09728_consen  139 ELREKLKSLIEQYE  152 (309)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33334444444333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0249|consensus

Probab=87.65  E-value=43  Score=35.87  Aligned_cols=6  Identities=50%  Similarity=0.545  Sum_probs=2.1

Q ss_pred             ccHHHH
Q psy14063         29 LEPELR   34 (531)
Q Consensus        29 Le~~~~   34 (531)
                      ++....
T Consensus        33 ~e~~~~   38 (916)
T KOG0249|consen   33 LEHSLP   38 (916)
T ss_pred             HHhhhh
Confidence            333333

>KOG0288|consensus

Probab=87.59  E-value=32  Score=34.24  Aligned_cols=14  Identities=7%  Similarity=0.135  Sum_probs=6.8

Q ss_pred             cCcchHHHHHHHhc
Q psy14063        256 IDQKYDIAVSTACG  269 (531)
Q Consensus       256 v~~~y~~Aie~~lg  269 (531)
                      +|..-..++++..|
T Consensus       163 lpS~~~~~ld~h~g  176 (459)
T KOG0288|consen  163 LPSRALFVLDAHEG  176 (459)
T ss_pred             cchhhhhhhhcccc
Confidence            34444445555554

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.56  E-value=16  Score=38.35  Aligned_cols=6  Identities=33%  Similarity=0.379  Sum_probs=2.9

Q ss_pred             CCceeE
Q psy14063        294 VGRVNV  299 (531)
Q Consensus       294 ~gr~tf  299 (531)
                      -|.+.+
T Consensus       544 ~GDvi~  549 (652)
T COG2433         544 EGDVIL  549 (652)
T ss_pred             cCcEEE
Confidence            355544

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.98  E-value=48  Score=35.66  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             cccccccC-cchHHHHHHHhc--cCCcEE
Q psy14063        250 LGDLGGID-QKYDIAVSTACG--ALNYIV  275 (531)
Q Consensus       250 l~~li~v~-~~y~~Aie~~lg--~l~~iv  275 (531)
                      .|++|+++ ..|+.+++..||  .+.-+|
T Consensus       470 AGELI~~~~~~WE~~~qRiL~GF~~~mLV  498 (1104)
T COG4913         470 AGELIDPNNAEWEPVVQRILGGFAAEMLV  498 (1104)
T ss_pred             cccccCCCcccchHHHHHHhhhchhhhcc
Confidence            57888884 589999999998  444443

>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []

Probab=86.82  E-value=24  Score=33.15  Aligned_cols=42  Identities=14%  Similarity=0.065  Sum_probs=18.0

Q ss_pred             HHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063         55 QYERYVNMKNLGEH-ETKVQQMEQELTANLESIKKCTDEMESA   96 (531)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (531)
                      |.++.++..++.-. -.-+..-+.++.-+-.+.+.+..++...
T Consensus        29 wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qw   71 (268)
T PF11802_consen   29 WKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQW   71 (268)
T ss_pred             HHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            66666555555333 1122222333333444444444444443

The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.77  E-value=9.9  Score=34.16  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~  220 (531)
                      ..++..++....+-..+..++.+++.+++..+.++..+..+...+...+..+-.++..++.++.++...
T Consensus       138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            333333333333444444444444444444444444444444444444444444455555555544433

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=86.70  E-value=48  Score=35.37  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        483 KRLASLETELRILSQQKMEVETQ  505 (531)
Q Consensus       483 ~~~~~l~~~~~~~~~~~~~~~~~  505 (531)
                      -++..+..++..+..++..-..+
T Consensus       746 ~ELs~lk~el~slK~QLk~e~~e  768 (786)
T PF05483_consen  746 LELSNLKNELSSLKKQLKTERTE  768 (786)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH
Confidence            33444444444444444333333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK10869 recombination and repair protein; Provisional

Probab=86.65  E-value=49  Score=35.38  Aligned_cols=17  Identities=18%  Similarity=0.188  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy14063         68 HETKVQQMEQELTANLE   84 (531)
Q Consensus        68 ~~~~~~~~~~~l~~~~~   84 (531)
                      ...+++.++-++.+++.
T Consensus       183 ~~~~~d~l~fql~Ei~~  199 (553)
T PRK10869        183 RAARKQLLQYQLKELNE  199 (553)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            33444444444444433

>PF13514 AAA_27: AAA domain

Probab=86.34  E-value=76  Score=37.30  Aligned_cols=16  Identities=31%  Similarity=0.418  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy14063         68 HETKVQQMEQELTANL   83 (531)
Q Consensus        68 ~~~~~~~~~~~l~~~~   83 (531)
                      +...+..++..+..+.
T Consensus       748 ~~~ri~~~~~~~~~f~  763 (1111)
T PF13514_consen  748 LRRRIEQMEADLAAFE  763 (1111)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=86.31  E-value=30  Score=32.70  Aligned_cols=25  Identities=16%  Similarity=0.392  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063         38 NFLELENCVQRKHNEIYQYERYVNM   62 (531)
Q Consensus        38 ~~~~~~~~l~~l~~~l~~~~~~~~~   62 (531)
                      .|.-.+..++.--.+||.++-+-.+
T Consensus        58 ~~~~tKa~IKLN~KkLY~ADGyAVk   82 (267)
T PF10234_consen   58 EFMATKARIKLNPKKLYQADGYAVK   82 (267)
T ss_pred             HHHHHHhheeecHHHHHHhhHHHHH
Confidence            3444444444444555555544433

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=86.27  E-value=29  Score=32.48  Aligned_cols=17  Identities=6%  Similarity=0.368  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy14063        205 DQVEKLAREVSEKRESM  221 (531)
Q Consensus       205 ~~l~~l~~~l~~~~~~~  221 (531)
                      .++..+...+..++..+
T Consensus       192 ~~~~~l~~~l~~Lq~~l  208 (240)
T PF12795_consen  192 ARIQRLQQQLQALQNLL  208 (240)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.24  E-value=21  Score=30.71  Aligned_cols=51  Identities=20%  Similarity=0.298  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        152 ADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAK  202 (531)
Q Consensus       152 ~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~  202 (531)
                      ..+..++..+...+..++..+..++.++...+.....+...+..+...+..
T Consensus        62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~  112 (151)
T PF11559_consen   62 RRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ  112 (151)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=86.18  E-value=33  Score=33.02  Aligned_cols=16  Identities=13%  Similarity=0.381  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHcCCCc
Q psy14063        281 AGEAVIAAVKRQNVGR  296 (531)
Q Consensus       281 ~a~~~i~~Lk~~~~gr  296 (531)
                      +.+.+.+-|++.++|-
T Consensus       284 dcRrLfDsLreEnlgm  299 (401)
T PF06785_consen  284 DCRRLFDSLREENLGM  299 (401)
T ss_pred             HHHHHHhhhcccccce
Confidence            3445555566555553

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=86.06  E-value=30  Score=32.40  Aligned_cols=10  Identities=30%  Similarity=0.571  Sum_probs=3.6

Q ss_pred             HHHHhHHHHH
Q psy14063         85 SIKKCTDEME   94 (531)
Q Consensus        85 ~~~~~~~~~~   94 (531)
                      .+..+..++.
T Consensus        53 ~~~~l~~~l~   62 (240)
T PF12795_consen   53 EIRELQKELE   62 (240)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>KOG0804|consensus

Probab=85.90  E-value=42  Score=33.88  Aligned_cols=12  Identities=8%  Similarity=0.365  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q psy14063        206 QVEKLAREVSEK  217 (531)
Q Consensus       206 ~l~~l~~~l~~~  217 (531)
                      .+..++.+++++
T Consensus       436 ~I~dLqEQlrDl  447 (493)
T KOG0804|consen  436 KITDLQEQLRDL  447 (493)
T ss_pred             HHHHHHHHHHhH
Confidence            333333333333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=85.82  E-value=51  Score=34.81  Aligned_cols=30  Identities=17%  Similarity=0.209  Sum_probs=17.3

Q ss_pred             HHHHHHHhc-cC--C----cEEecch-----HHHHHHHHHHH
Q psy14063        261 DIAVSTACG-AL--N----YIVTETV-----EAGEAVIAAVK  290 (531)
Q Consensus       261 ~~Aie~~lg-~l--~----~ivv~~~-----~~a~~~i~~Lk  290 (531)
                      -.++|++.| .+  +    .+|+.+.     +.|+..++.|-
T Consensus       227 ir~~e~~tgvd~iiddtp~~v~ls~fdp~rreia~~~l~~li  268 (514)
T TIGR03319       227 IRALETLTGVDLIIDDTPEAVILSGFDPVRREIARMALEKLI  268 (514)
T ss_pred             HHHHHHHhCceEEEcCCCCeEEecCCchHHHHHHHHHHHHHH
Confidence            358888888 43  2    5555543     44555555553

>KOG1899|consensus

Probab=85.66  E-value=42  Score=35.31  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=11.1

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy14063         58 RYVNMKNLGEHETKVQQMEQELTANLE   84 (531)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (531)
                      |.....+|+.++.-++...++|...++
T Consensus       134 VeaQgEKIrDLE~cie~kr~kLnatEE  160 (861)
T KOG1899|consen  134 VEAQGEKIRDLETCIEEKRNKLNATEE  160 (861)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence            333334444444444444444443333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=85.51  E-value=21  Score=30.18  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy14063        195 DLTREEAKLLDQVEKLAREVSE  216 (531)
Q Consensus       195 ~l~~~~~~~~~~l~~l~~~l~~  216 (531)
                      .+...+..+...+..+..+++.
T Consensus       105 ~l~~~~~~l~~~l~~~~~~~~~  126 (140)
T PRK03947        105 ELEKALEKLEEALQKLASRIAQ  126 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=85.50  E-value=1.8  Score=41.69  Aligned_cols=81  Identities=15%  Similarity=0.277  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14063        144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQT  223 (531)
Q Consensus       144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~  223 (531)
                      +.+....|..+...+..++..+..+...+..+...+......+..++..+..+...+..++..+....-.+..++.+++.
T Consensus        72 l~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~  151 (326)
T PF04582_consen   72 LADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA  151 (326)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence            33333333344444444444444444444444444444444444444444444444445555555555555555554444


Q ss_pred             h
Q psy14063        224 S  224 (531)
Q Consensus       224 ~  224 (531)
                      +
T Consensus       152 L  152 (326)
T PF04582_consen  152 L  152 (326)
T ss_dssp             H
T ss_pred             H
Confidence            3

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=85.34  E-value=6.3  Score=43.64  Aligned_cols=14  Identities=21%  Similarity=0.411  Sum_probs=9.3

Q ss_pred             chHHHHHHHhc-cCC
Q psy14063        259 KYDIAVSTACG-ALN  272 (531)
Q Consensus       259 ~y~~Aie~~lg-~l~  272 (531)
                      .|..||-..+| .+.
T Consensus       635 eFr~av~~llGyki~  649 (722)
T PF05557_consen  635 EFREAVYSLLGYKID  649 (722)
T ss_dssp             HHHHHHHHHHSEEEE
T ss_pred             HHHHHHHHHhcceee
Confidence            46677777787 444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=85.06  E-value=58  Score=34.79  Aligned_cols=27  Identities=4%  Similarity=0.011  Sum_probs=11.7

Q ss_pred             HHHHHhHHhhhhHHHHHHHhhccHHHH
Q psy14063          8 YDEERTEKLTRVQLVETDLKALEPELR   34 (531)
Q Consensus         8 l~~~~~~~~~~~~~~e~~~~~Le~~~~   34 (531)
                      ..+-+.++.+.++.+......|.-+++
T Consensus       181 T~qly~~l~~niekMi~aFEeLR~qAE  207 (786)
T PF05483_consen  181 TRQLYMDLNENIEKMIAAFEELRVQAE  207 (786)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=84.92  E-value=35  Score=32.12  Aligned_cols=30  Identities=30%  Similarity=0.483  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        185 EIAESRARLADLTREEAKLLDQVEKLAREV  214 (531)
Q Consensus       185 ~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l  214 (531)
                      ++..+...+..+.............++.++
T Consensus        83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el  112 (246)
T PF00769_consen   83 ELREAEAEIARLEEESERKEEEAEELQEEL  112 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=84.88  E-value=44  Score=33.27  Aligned_cols=53  Identities=17%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        163 TTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVS  215 (531)
Q Consensus       163 ~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~  215 (531)
                      ..+...+..+...+..+..++..+..+..+++....+...++.++...+..+.
T Consensus       228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~  280 (344)
T PF12777_consen  228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE  280 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            33333333333333333333333333333333333333333333333333333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=83.38  E-value=2.5  Score=40.83  Aligned_cols=105  Identities=18%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ  206 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~  206 (531)
                      ...+..+...+..+...+......+......+..+...+..++..+..+...+..+...+......+..++..+..+...
T Consensus        48 ~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTd  127 (326)
T PF04582_consen   48 SDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTD  127 (326)
T ss_dssp             ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhh
Confidence            33333334444444444444455555555555555555555555555555555555555555566666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHH
Q psy14063        207 VEKLAREVSEKRESMQTSRSNNRLI  231 (531)
Q Consensus       207 l~~l~~~l~~~~~~~~~~~~~~~~l  231 (531)
                      +.+++..+....-.+..++.|...+
T Consensus       128 vsNLksdVSt~aL~ItdLe~RV~~L  152 (326)
T PF04582_consen  128 VSNLKSDVSTQALNITDLESRVKAL  152 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhcchHhhHHHHHHHH
Confidence            6666666666655555555554443

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0804|consensus

Probab=83.26  E-value=54  Score=33.08  Aligned_cols=9  Identities=11%  Similarity=0.538  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q psy14063        213 EVSEKRESM  221 (531)
Q Consensus       213 ~l~~~~~~~  221 (531)
                      ++.+++.++
T Consensus       436 ~I~dLqEQl  444 (493)
T KOG0804|consen  436 KITDLQEQL  444 (493)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG1853|consensus

Probab=82.26  E-value=41  Score=30.98  Aligned_cols=9  Identities=33%  Similarity=0.545  Sum_probs=3.3

Q ss_pred             ccccccccc
Q psy14063        441 GAIIEPSGT  449 (531)
Q Consensus       441 g~~~~~~g~  449 (531)
                      |.-+..+++
T Consensus       297 gtk~~rs~s  305 (333)
T KOG1853|consen  297 GTKVERSDS  305 (333)
T ss_pred             cccccccCc
Confidence            333333333

>KOG2991|consensus

Probab=81.76  E-value=44  Score=30.92  Aligned_cols=73  Identities=15%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        148 TKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       148 ~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~  220 (531)
                      +-+|..+..++..-...-+++....+++..-+.++...++-.+..+--++.++.+.+.+++.+...+....+.
T Consensus       235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa  307 (330)
T KOG2991|consen  235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA  307 (330)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555544444444555555555555555555555555555555566666666665555555444433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=81.62  E-value=69  Score=33.11  Aligned_cols=21  Identities=14%  Similarity=0.234  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHH
Q psy14063         73 QQMEQELTANLESIKKCTDEM   93 (531)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~   93 (531)
                      .-++.++..+..++...+.++
T Consensus       174 ~fl~~ql~~~~~~l~~ae~~l  194 (444)
T TIGR03017       174 LWFVQQIAALREDLARAQSKL  194 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG4302|consensus

Probab=81.45  E-value=83  Score=33.96  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        130 CDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLT  166 (531)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~  166 (531)
                      +..+...++.++.+..+...++..+...++.+-..|.
T Consensus       105 l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~  141 (660)
T KOG4302|consen  105 LESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELG  141 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333444445555555555555555555555544443

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=80.79  E-value=88  Score=33.82  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=22.9

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEEL  175 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l  175 (531)
                      +.+....+.++.....++.....-+..+++.......-+.++..++.++
T Consensus       997 eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~ 1045 (1480)
T COG3096         997 EAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDI 1045 (1480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence            3333333344444444444444444555555555555555555555444

>PRK12704 phosphodiesterase; Provisional

Probab=80.73  E-value=81  Score=33.36  Aligned_cols=11  Identities=45%  Similarity=0.815  Sum_probs=5.2

Q ss_pred             CCC-cccccccc
Q psy14063        243 VSG-ILGRLGDL  253 (531)
Q Consensus       243 ~~g-v~g~l~~l  253 (531)
                      ++| ++|+=|..
T Consensus       221 mkgriigreGrn  232 (520)
T PRK12704        221 MKGRIIGREGRN  232 (520)
T ss_pred             hhcceeCCCcch
Confidence            344 55554443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=80.65  E-value=1.7  Score=48.13  Aligned_cols=15  Identities=20%  Similarity=0.224  Sum_probs=10.1

Q ss_pred             hHHHHHHHHhhCCeE
Q psy14063        334 EKIRLAFYFATRETL  348 (531)
Q Consensus       334 ~~~~~~~~~llg~~~  348 (531)
                      ..|+.+++.+||=.|
T Consensus       634 ~eFr~av~~llGyki  648 (722)
T PF05557_consen  634 QEFREAVYSLLGYKI  648 (722)
T ss_dssp             HHHHHHHHHHHSEEE
T ss_pred             HHHHHHHHHHhccee
Confidence            467777887877443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4809|consensus

Probab=80.50  E-value=76  Score=32.91  Aligned_cols=33  Identities=9%  Similarity=-0.018  Sum_probs=13.2

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy14063         57 ERYVNMKNLGEHETKVQQMEQELTANLESIKKC   89 (531)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   89 (531)
                      +..+.+..+..+++....+..-+...+.+++.+
T Consensus       353 ~l~eke~sl~dlkehassLas~glk~ds~Lk~l  385 (654)
T KOG4809|consen  353 ELTEKESSLIDLKEHASSLASAGLKRDSKLKSL  385 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence            344444444444444444433333333333333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=80.22  E-value=79  Score=32.90  Aligned_cols=15  Identities=7%  Similarity=0.377  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q psy14063        156 ANLEKVQTTLTERKT  170 (531)
Q Consensus       156 ~~i~~~e~~l~~~~~  170 (531)
                      .++..++..+.+.+.
T Consensus       243 ~~i~~l~~~i~~~~~  257 (457)
T TIGR01000       243 QQIDQLQKSIASYQV  257 (457)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	531
3l51_B	166	Crystal Structure Of The Mouse Condensin Hinge Doma		4e-26
3l51_B	166	Crystal Structure Of The Mouse Condensin Hinge Doma		3e-04
2wd5_A	233	Smc Hinge Heterodimer (Mouse) Length = 233		4e-05

>pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain Length = 166

Iteration: 1
 Score =  116 bits (290), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
Query: 229 RLIDFVMQLKSENRVSXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAA 288
           +++D ++Q K   R+              +KYDIA+S+ C AL+YIV ++++  +  +  
Sbjct: 2   KVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNF 61
Query: 289 VKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETL 348
           +K+ N+G    I LDK   +  +   K +TPEN PRL DL++V++E+IR AFYFA R+TL
Sbjct: 62  LKKHNIGIATFIGLDKXTVWAKK-XSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTL 120
Query: 349 VAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSET 381
           VA +L+QA R+ Y     +R+VTL+G IIE S T
Sbjct: 121 VANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGT 154

>pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 414 ETLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGG 453
           +TLVA +L+QA R+ Y     +R+VTL+G IIE SGT SGG
Sbjct: 118 DTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTXSGG 158

>pdb|2WD5|A Chain A, Smc Hinge Heterodimer (Mouse) Length = 233

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 258 QKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKY 316
           +KY IAV+   G  ++ I+ ++ + G   I  +K Q       +PLD ++   +   +K 
Sbjct: 68  KKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTD--EKL 125
Query: 317 RTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEGAI 375
           R  +    +ID+I+ +   I+ A  +A    LV  ++  A+RI + G   ++ V L+G +
Sbjct: 126 RELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTL 185
Query: 376 IEPSETLV--AQDLNQAKR 392
            + S  +   A DL    R
Sbjct: 186 FQKSGVISGGASDLKAKAR 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	531
3l51_B	166	Structural maintenance of chromosomes protein 4; s	5e-55
3l51_B	166	Structural maintenance of chromosomes protein 4; s	4e-13
2wd5_A	233	Structural maintenance of chromosomes protein 1A;	1e-45
2wd5_A	233	Structural maintenance of chromosomes protein 1A;	2e-13
1gxj_A	186	SMC, chromosome segregation SMC protein; SMC dimer	1e-44
1gxj_A	186	SMC, chromosome segregation SMC protein; SMC dimer	7e-15
1gxl_A	213	SMC, chromosome segregation SMC protein; SMC dimer	7e-43
1gxl_A	213	SMC, chromosome segregation SMC protein; SMC dimer	1e-14
3nwc_A	189	SMC protein; structural maintenance of chromosomes	2e-34
3nwc_A	189	SMC protein; structural maintenance of chromosomes	2e-10
2wd5_B	213	Structural maintenance of chromosomes protein 3; D	7e-33
2wd5_B	213	Structural maintenance of chromosomes protein 3; D	4e-12
3l51_A	161	Structural maintenance of chromosomes protein 2; s	3e-27
3l51_A	161	Structural maintenance of chromosomes protein 2; s	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04

>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} Length = 166

 Score =  181 bits (462), Expect = 5e-55
 Identities = 73/152 (48%), Positives = 107/152 (70%), Gaps = 2/152 (1%)

Query: 229 RLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAA 288
           +++D ++Q K   R+ GI GRLGDLG ID+KYDIA+S+ C AL+YIV ++++  +  +  
Sbjct: 2   KVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNF 61

Query: 289 VKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETL 348
           +K+ N+G    I LDKM  +  +   K +TPEN PRL DL++V++E+IR AFYFA R+TL
Sbjct: 62  LKKHNIGIATFIGLDKMTVWAKK-MSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTL 120

Query: 349 VAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPS 379
           VA +L+QA R+ Y     +R+VTL+G IIE S
Sbjct: 121 VANNLDQATRVAYQRDRRWRVVTLQGQIIEQS 152

>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} Length = 166

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNP 457
           TLVA +L+QA R+ Y     +R+VTL+G IIE SGTMSGG  + 
Sbjct: 119 TLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLEHH 162

>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} Length = 233

 Score =  159 bits (403), Expect = 1e-45
 Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 193 LADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGD 252
           +    R   ++  ++ ++  ++ + R   Q S    R  + +  +K       + GRL D
Sbjct: 3   VEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYP-GSVYGRLID 61

Query: 253 LGG-IDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHS 310
           L     +KY IAV+   G  ++ I+ ++ + G   I  +K Q       +PLD ++   +
Sbjct: 62  LCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT 121

Query: 311 QCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMV 369
              +K R  +    +ID+I+ +   I+ A  +A    LV  ++  A+RI + G   ++ V
Sbjct: 122 D--EKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTV 179

Query: 370 TLEGAIIEPS 379
            L+G + + S
Sbjct: 180 ALDGTLFQKS 189

>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} Length = 233

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 12/87 (13%)

Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNP-IRGLMGRKATVSTDT 472
            LV  ++  A+RI + G   ++ V L+G + + SG +SGG S+   +     +       
Sbjct: 156 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDE------- 208

Query: 473 SLVKDLEVKEKRLASLETELRILSQQK 499
              K ++  +++   L  EL       
Sbjct: 209 ---KAVDKLKEKKGRLTEELLEHHHHH 232

>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A Length = 186

 Score =  154 bits (392), Expect = 1e-44
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 5/169 (2%)

Query: 213 EVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGA-L 271
           E       M+  R  +R +  V + K   R  G++  + +L  +D+KY +AVS   G   
Sbjct: 1   EKEMIERDMREYRGFSRAVRAVFEEK--ERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTA 58

Query: 272 NYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQV 331
             IV   V+  +A++  +K+   GRV ++PLD +    ++          V   +DL++ 
Sbjct: 59  QNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKF 118

Query: 332 QDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPS 379
               + +   F    ++V + L+ A R+        R+ TL+G +I   
Sbjct: 119 -PSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGR 166

>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A Length = 186

 Score = 71.9 bits (177), Expect = 7e-15
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRK 465
           ++V + L+ A R+        R+ TL+G +I   G ++GG       +  R+
Sbjct: 133 SVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERR 184

>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1 Length = 213

 Score =  150 bits (382), Expect = 7e-43
 Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 206 QVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVS 265
           ++ ++  E       M+  R  +R +  V + K   R  G++  + +L  +D+KY +AVS
Sbjct: 6   RLREIQFEKEMIERDMREYRGFSRAVRAVFEEK--ERFPGLVDVVSNLIEVDEKYSLAVS 63

Query: 266 TACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPR 324
              G     IV   V+  +A++  +K+   GRV ++PLD +    ++          V  
Sbjct: 64  VLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERGFVGY 123

Query: 325 LIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPS 379
            +DL++     + +   F    ++V + L+ A R+        R+ TL+G +I   
Sbjct: 124 AVDLVKF-PSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGR 178

>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1 Length = 213

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 415 TLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTS 473
           ++V + L+ A R+        R+ TL+G +I   G ++GG       +  R+        
Sbjct: 145 SVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFERR-------- 196

Query: 474 LVKDLEVKEKRLASLETEL 492
               L+  E+ +   E ++
Sbjct: 197 --IKLKHLEQEMEETERQI 213

>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus} Length = 189

 Score =  127 bits (321), Expect = 2e-34
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 213 EVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGI-DQKYDIAVSTACG-A 270
           E SE+      ++   R      +LK  + + GI G L +L  + D+ Y +A+  A G  
Sbjct: 4   ESSERELIAAEAQREVRGNRAAEELK-RSGIGGIYGTLAELIKVKDEAYALAIEVALGNR 62

Query: 271 LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQ 330
            + +V E     E  I  +K   +GR+  +PL+K++        K+         +D+I+
Sbjct: 63  ADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKP-------KHVDSSVGLPAVDVIE 115

Query: 331 VQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPS 379
             D+KI  A  FA  +T++   + +A+         RMVT+EG + E S
Sbjct: 116 Y-DQKIENAVKFALGDTVIVNSMEEARPHIGK---VRMVTIEGELYERS 160

>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus} Length = 189

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 415 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRG-LMGRK 465
           T++   + +A+         RMVT+EG + E SG ++GG        +   K
Sbjct: 131 TVIVNSMEEARPHIGK---VRMVTIEGELYERSGAITGGHFRARGLAVDTTK 179

>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} Length = 213

 Score =  123 bits (312), Expect = 7e-33
 Identities = 27/184 (14%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 201 AKLLDQVEKLAREVSEK--RESMQTSRSNNRLIDFVMQLK-SENRVSGILGRLGDLGGID 257
           A   + +EK  + +     +  +    S N++++   +   +++  +G  G + +    +
Sbjct: 1   AAKREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVQNGYHGIVMNNFECE 60

Query: 258 QKYDIAVSTA-CGALNYIVTETVE-AGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDK 315
             +   V       L Y + ++ E + + ++   K    G V  +PL+K+    +     
Sbjct: 61  PAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTA---- 116

Query: 316 YRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAI 375
           Y    +   +I  ++  + +   AF     +TL+ + +  + ++  +      +TLEG  
Sbjct: 117 YPETNDAIPMISKLRY-NPRFDKAFKHVFGKTLICRSMEVSTQLARA-FTMDCITLEGDQ 174

Query: 376 IEPS 379
           +   
Sbjct: 175 VSHR 178

>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} Length = 213

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 415 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVSTDTSL 474
           TL+ + +  + ++  +      +TLEG  +   G ++GG  +  +  +  +         
Sbjct: 147 TLICRSMEVSTQLARAFT-MDCITLEGDQVSHRGALTGGYYDTRKSRLELQ--------- 196

Query: 475 VKDLEVKEKRLASLETEL 492
            KD+   E+ L  LE +L
Sbjct: 197 -KDVRKAEEELGELEAKL 213

>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} Length = 161

 Score =  106 bits (267), Expect = 3e-27
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 231 IDFVMQLKSENR-VSGILGRLGDLGGI-DQKYDIAVSTACGA-LNYIVTETVEAGEAVIA 287
           + F  +   +N   + + G +  L  + D     A+    G  L  +V +T    + ++ 
Sbjct: 1   LQFAYKDPEKNWNRNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLE 60

Query: 288 AVKRQNVGRVNVIPLDKMQQYH-----SQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYF 342
             + +   R  +IPL+K+          +       P+NV   + L+     +++    F
Sbjct: 61  KGELK--RRYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVDY-KPELQKGMEF 117

Query: 343 ATRETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPS 379
               T V  +++ AK++ +      R VTL G + +P 
Sbjct: 118 VFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPH 155

>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} Length = 161

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 415 TLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGG 453
           T V  +++ AK++ +      R VTL G + +P GT+SGG
Sbjct: 122 TFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 83.0 bits (204), Expect = 1e-16
 Identities = 87/488 (17%), Positives = 147/488 (30%), Gaps = 145/488 (29%)

Query: 4   LYGKYDEERTEKLTRVQLVETDLKALEPELR----------KAVNFLELENC----VQRK 49
           ++ KY+  R +   +++     L  L P             K    + L+ C    VQ K
Sbjct: 125 VFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCK 179

Query: 50  H-NEIYQYERYVNMKNLGEHETKVQ-------QMEQELTANLESIKKCTDEMESAKSELK 101
              +I+    ++N+KN    ET ++       Q++   T+  +        + S ++EL+
Sbjct: 180 MDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 102 T--VEKKGKES-----NVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLAD- 153
                K  +       NV  +K  W+ F+      C       +I L+T+ K+   + D 
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKA-WNAFN----LSC-------KILLTTRFKQ---VTDF 280

Query: 154 LEAN------LEKVQTTLTERKT--------------LCEELTTRVPAMESEIAESRARL 193
           L A       L+    TLT  +               L  E+ T  P   S IAE     
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE----- 335

Query: 194 ADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFVMQLKS-ENRVSGILGRLGD 252
               R+     D  + +  +  +    +++S         +  L+  E R          
Sbjct: 336 --SIRDGLATWDNWKHVNCD--KLTTIIESS---------LNVLEPAEYR-----KMFDR 377

Query: 253 LGGIDQKYDIAVSTAC---GALNYIVTETVEAGEAVIAAVKRQNVGRVNVIP-------- 301
           L        I           +       V       + V++Q       IP        
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 302 -LDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIG 360
            L+     H    D Y  P+      DLI    ++     YF                  
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQ-----YF------------------ 473

Query: 361 YSGGGYRMVTLEGAIIEPSETLVAQDLN--QAKRIGYSGGGYRMVTLEGAIIEPSETLVA 418
           YS  G+ +  +E         +V  D    + K I +        T   A      TL  
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDS------TAWNASGSILNTL-- 524

Query: 419 QDLNQAKR 426
           Q L   K 
Sbjct: 525 QQLKFYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 5e-11
 Identities = 87/543 (16%), Positives = 162/543 (29%), Gaps = 177/543 (32%)

Query: 64  NLGEHETKVQQMEQELTANLESIKK---CTDEMESAKSELKTVEKKGKESNVIGSKFRWS 120
             GEH+ + + +   L+   ++      C D  +  KS L   E      ++I SK   S
Sbjct: 10  ETGEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEID----HIIMSKDAVS 62

Query: 121 VFSAKTRFECDIAKSELEIFLSTQSKETKKLAD--LEANLEKVQTTLTERKTLCEELTTR 178
                T              LS Q +  +K  +  L  N + + + +            R
Sbjct: 63  ----GTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE--------QR 103

Query: 179 VPAMESEIAESRARLADLTREEAKLLDQVEKLA-REVSEKRESMQTSRSNNRLIDFVMQL 237
            P+M + +           R+  +L +  +  A   VS  R          +L   +++L
Sbjct: 104 QPSMMTRMYIE-------QRD--RLYNDNQVFAKYNVS--RLQPYL-----KLRQALLEL 147

Query: 238 KSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIA-AVKRQ---- 292
           +    V  I G LG                 G       +T  A +  ++  V+ +    
Sbjct: 148 RPAKNV-LIDGVLG----------------SG-------KTWVALDVCLSYKVQCKMDFK 183

Query: 293 ----NVGRVN-----VIPLDKM-----QQYHSQCYDKYRTPENV---------------- 322
               N+   N     +  L K+       + S+          +                
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 323 PR-LIDLIQVQDEKIRLAFYFA------TRETLVAQDLNQAKRIGYSGGGYRMVTLEGAI 375
              L+ L+ VQ+ K   AF  +      TR   V   L+ A     S     +      +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-----LDHHSMTL 298

Query: 376 IEP-SETLVA-------QDL-NQAK-------------------RIGYSGGGYRMVTLE- 406
                ++L+        QDL  +                             ++ V  + 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDK 354

Query: 407 -GAIIEPS-ETLVAQDLNQAKRIGYSGGGYRMVTL--EGAIIEPSGTMSGGGSNPIRGLM 462
              IIE S   L   +  +          +  +++    A I P+  +S    + I+  +
Sbjct: 355 LTTIIESSLNVLEPAEYRKM---------FDRLSVFPPSAHI-PTILLSLIWFDVIKSDV 404

Query: 463 GRKATVSTDTSLV-KDLEVKEKRLASLETELRILSQQKMEVETQLNCTGNEL--KYK-KQ 518
                     SLV K  +     + S+  EL+     K+E E  L+     +   Y   +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK----VKLENEYALH---RSIVDHYNIPK 457

Query: 519 EYD 521
            +D
Sbjct: 458 TFD 460

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 60/422 (14%), Positives = 127/422 (30%), Gaps = 98/422 (23%)

Query: 1   MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENC------VQRKHNEIY 54
           ++ L  + D   T +      ++  + +++ ELR+ +     ENC      VQ    + +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAW 259

Query: 55  QY----------ERYVNMKN-LGEHETKVQQMEQELTANLESIKKCTDEMES--AK---- 97
                        R+  + + L    T    ++   +  L       DE++S   K    
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLT-----PDEVKSLLLKYLDC 313

Query: 98  --SELKTVEKKGKES----NVIGSKF-----RWSVFSAKTRFECDIAKSELEIFLSTQS- 145
              +L         +    ++I          W  +       CD   + +E  L+    
Sbjct: 314 RPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEP 368

Query: 146 KETKKL-ADLEANLEKVQTTLTERKTLC---EELTTRVP-----------AMESEIAESR 190
            E +K+   L                L     ++                 +E +  ES 
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 191 ARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSNNRLIDFV------------MQLK 238
             +  +  E    L+    L R + +     +T  S++ +  ++              ++
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 239 SENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYI--VTETVEAGEAVIAAVKRQNVGR 296
              R++       D   ++QK     STA  A   I    + ++  +  I     +    
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 297 VNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQA 356
           VN I LD + +          +        DL++       +A      E +  +   Q 
Sbjct: 545 VNAI-LDFLPKIEENL---ICSKY-----TDLLR-------IALMAED-EAIFEEAHKQV 587

Query: 357 KR 358
           +R
Sbjct: 588 QR 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 18/227 (7%)

Query: 7    KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVN--MKN 64
            + +E   E   R++  E   + L+ E +K      ++  +     ++ + E         
Sbjct: 924  ELEEILHEMEARIEEEEERSQQLQAEKKK------MQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 65   LGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSA 124
                + K+++ME ++    +   K T E +  +  +  +     E               
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT------ 1031

Query: 125  KTRFECDIAKSELEIFLSTQSKET----KKLADLEANLEKVQTTLTERKTLCEELTTRVP 180
            K + + +   SELE+ L  + K      K    LE     +   + E +    EL  ++ 
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 181  AMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSN 227
              E E+  + ARL D T ++   L ++ +L   +S+ +E +++ ++ 
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 40/216 (18%), Positives = 84/216 (38%), Gaps = 22/216 (10%)

Query: 7    KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLG 66
                   +   R  + + +LK L+ E R        +       N+I Q +R      + 
Sbjct: 887  LKAIVYLQCCYRRMMAKRELKKLKIEARSV---ERYKKLHIGLENKIMQLQR-----KID 938

Query: 67   EHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKGKESNVIGSKFRWSVFSAKT 126
            E   + + + +++     +    T+++ S    L+  E++ K +       +  +  AK 
Sbjct: 939  EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI--AKL 996

Query: 127  RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEI 186
            R E    ++E +       K   +   L + L++  T L   K   EEL  R+     EI
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK---EELNRRIHDQAKEI 1053

Query: 187  AESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ 222
             E+          E KL+++ ++L  +++++R   Q
Sbjct: 1054 TET---------MEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 7/180 (3%)

Query: 48  RKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKSELKTVEKKG 107
           R +    +Y+   +     +   +   +  +    L    K     +  +  L  V    
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE-HKSIIIQKHVRGWLARVHYHR 885

Query: 108 KESNVIGSKFRWSVFSAKTRFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTE 167
               ++  +  +    AK   +      +L+I   +  +  K    LE  + ++Q  + E
Sbjct: 886 TLKAIVYLQCCYRRMMAKRELK------KLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939

Query: 168 RKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQTSRSN 227
           +    + L  ++  +E   +    +L           ++ +     V   +E +   R  
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	531
3l51_B	166	Structural maintenance of chromosomes protein 4; s	99.96
3nwc_A	189	SMC protein; structural maintenance of chromosomes	99.94
1gxl_A	213	SMC, chromosome segregation SMC protein; SMC dimer	99.93
2wd5_B	213	Structural maintenance of chromosomes protein 3; D	99.92
2wd5_A	233	Structural maintenance of chromosomes protein 1A;	99.92
3l51_A	161	Structural maintenance of chromosomes protein 2; s	99.92
1gxj_A	186	SMC, chromosome segregation SMC protein; SMC dimer	99.89
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.73
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.7
3l51_A	161	Structural maintenance of chromosomes protein 2; s	98.24
3l51_B	166	Structural maintenance of chromosomes protein 4; s	98.21
1gxl_A	213	SMC, chromosome segregation SMC protein; SMC dimer	98.2
2wd5_B	213	Structural maintenance of chromosomes protein 3; D	98.18
3nwc_A	189	SMC protein; structural maintenance of chromosomes	97.94
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.93
2wd5_A	233	Structural maintenance of chromosomes protein 1A;	97.66
1gxj_A	186	SMC, chromosome segregation SMC protein; SMC dimer	97.4
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.31
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.98
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.93
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.75
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.55
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.51
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.49
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.19
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.07
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.94
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.85
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.4
3ibp_A	302	Chromosome partition protein MUKB; structural main	95.09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.07
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.46
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.0
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.08
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	91.05
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	90.39
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	89.89
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.83
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	89.04
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	88.76
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.2
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.17
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	87.02
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	85.71
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	84.86
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	82.26
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	81.61
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	81.02
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.47

>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0

Probab=99.96  E-value=8.4e-30  Score=223.14  Aligned_cols=133  Identities=48%  Similarity=0.875  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhccCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcc
Q psy14063        229 RLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQY  308 (531)
Q Consensus       229 ~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~  308 (531)
                      ++++.+++.+..+.++|++|+|+++++|+++|+.||++++|.+++|||++.++|..||++|++++.||+||+||+.+++.
T Consensus         2 ~~~~~l~~~~~~~~~~Gv~G~v~dLi~v~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~   81 (166)
T 3l51_B            2 KVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVW   81 (166)
T ss_dssp             HHHHHHHHHHHHTSSTTEEEEGGGSCBCCGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGG
T ss_pred             hHHHHHHHHHHhCCCCCceEEHHHheeeCHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECcccccc
Confidence            35677777766677899999999999999999999999999889999999999999999999999999999999988653


Q ss_pred             cccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063        309 HSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS  362 (531)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~  362 (531)
                      ....+ ....|++..++.|+|+|+++.|++++.++||+++||+|++.|..+++.
T Consensus        82 ~~~~~-~~~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~  134 (166)
T 3l51_B           82 AKKMS-KIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQ  134 (166)
T ss_dssp             TTSCC-CCCCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBC
T ss_pred             ccccc-ccccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence            21111 122345566789999996579999999999999999999999887654

>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}

Probab=99.94  E-value=1.2e-26  Score=206.05  Aligned_cols=119  Identities=27%  Similarity=0.498  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHhhcCCCCcccccccccccCcc-hHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCC
Q psy14063        229 RLIDFVMQLKSENRVSGILGRLGDLGGIDQK-YDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQ  306 (531)
Q Consensus       229 ~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~-y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~  306 (531)
                      ..++++++    ..++|++|+|+++++|+++ |+.||+++|| .+++|||++.++|..||++|+.++.||+||+|++.++
T Consensus        23 ~~v~~l~~----~~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~   98 (189)
T 3nwc_A           23 RAAEELKR----SGIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIK   98 (189)
T ss_dssp             THHHHHTT----SCCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTCC
T ss_pred             HHHHHHHh----cCCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCccc
Confidence            44555543    2478999999999999988 9999999999 9999999999999999999999999999999999876


Q ss_pred             cccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHH
Q psy14063        307 QYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRI  359 (531)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~  359 (531)
                      ++.      .+.++++. +.|+|+| |+.|.+++.++||+++||+|++.|..+
T Consensus        99 ~~~------~~~~~g~~-a~dlv~~-d~~~~~a~~~llg~tlvv~dl~~A~~l  143 (189)
T 3nwc_A           99 PKH------VDSSVGLP-AVDVIEY-DQKIENAVKFALGDTVIVNSMEEARPH  143 (189)
T ss_dssp             CCC------CCSCSSEE-GGGGEEC-CGGGHHHHHHHHTTEEEESCSGGGGGG
T ss_pred             ccc------CCCCCCcE-Eeeeecc-CHHHHHHHHHHhCCEEEECCHHHHHHH
Confidence            531      11222333 8899999 789999999999999999999998754

>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1

Probab=99.93  E-value=3.7e-25  Score=204.30  Aligned_cols=203  Identities=23%  Similarity=0.368  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHH
Q psy14063        207 VEKLAREVSEKRESMQTSRSNNRLIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAV  285 (531)
Q Consensus       207 l~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~  285 (531)
                      +..++.++..++............+..++..  ...++|++|+|+++++|+++|+.||+++|| .+++|||++..++..+
T Consensus         7 ~~~~~~r~~~L~~~~~~~~~~~~~~~~ll~~--~~~~~g~~g~l~~li~v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~   84 (213)
T 1gxl_A            7 LREIQFEKEMIERDMREYRGFSRAVRAVFEE--KERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAI   84 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTSCHHHHHHHTT--TTSCTTEEEEGGGTCBCCHHHHHHHHHHHGGGGGCEEESSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh--hhhhCCCceehhheeeeCHHHHHHHHHHHHHhhcEEEECCHHHHHHH
Confidence            3334444444443332222222344444432  124678999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHcCCCceeEEeCcCCCcccccccCcCC-CCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhhCC
Q psy14063        286 IAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYR-TPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGG  364 (531)
Q Consensus       286 i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~-~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~~~  364 (531)
                      +++|+.++.||++|+|++.+.+.. ....... .+++.+++.++|+| ++.|.+++.++||++++|+|++.|..+.+..+
T Consensus        85 i~~lk~~~~gr~~~lpl~~~~~~~-~~~~~~~~~~g~~~~~~d~v~~-~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~  162 (213)
T 1gxl_A           85 VEFLKQNEAGRVTILPLDLIDGSF-NRISGLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDDAIRMKKKYR  162 (213)
T ss_dssp             HHHHHHHTCEEEEEEETTTSCCCC-CCCTTGGGSTTEEEEGGGGCBC-CSTTHHHHHHHSSSEEEESSHHHHHHHHHHTC
T ss_pred             HHHHHhcCCCceEEEEchhcCCCC-ccchhhhcCCCcHHHHHHHhcC-CHHHHHHHHHHhCCEEEECCHHHHHHHHHhcC
Confidence            999999999999999998865431 0000011 13445678899999 67899999999999999999999988765421


Q ss_pred             CccEEccCCceecCCCceecccccccccccccCCccccccccccccccCchhHHhhHHHHHhccccCCceeEEccccccc
Q psy14063        365 GYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAII  444 (531)
Q Consensus       365 ~~~~vt~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~  444 (531)
                                                                                         ++.++||++|+++
T Consensus       163 -------------------------------------------------------------------~~~~~VT~~G~~~  175 (213)
T 1gxl_A          163 -------------------------------------------------------------------LNTRIATLDGELI  175 (213)
T ss_dssp             -------------------------------------------------------------------SSCEEECTTSCEE
T ss_pred             -------------------------------------------------------------------CCceEEecCCeEE
Confidence                                                                               4567899999999


Q ss_pred             cccccccCCCcccccccccccccccccCCcHHHHHHHHHHHHHHHH
Q psy14063        445 EPSGTMSGGGSNPIRGLMGRKATVSTDTSLVKDLEVKEKRLASLET  490 (531)
Q Consensus       445 ~~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  490 (531)
                      +++|+|+||+.....+.+.++          .++..++.++.+++.
T Consensus       176 ~~~G~~~gg~~~~~~~~l~~~----------~el~~l~~~l~~~~~  211 (213)
T 1gxl_A          176 SGRGAITGGREERSSNVFERR----------IKLKHLEQEMEETER  211 (213)
T ss_dssp             CTTSCEEECCCSSCCCTTHHH----------HHHHHHHHHHC----
T ss_pred             cCCceEECCCCccccchhhHH----------HHHHHHHHHHHHHHh
Confidence            999999988742122333332          555555555554443

>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=99.92  E-value=4.2e-25  Score=203.45  Aligned_cols=131  Identities=15%  Similarity=0.287  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHH-HhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcC-CCceeEEeCc
Q psy14063        227 NNRLIDFVMQL-KSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQN-VGRVNVIPLD  303 (531)
Q Consensus       227 ~~~~l~~l~~~-~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~-~gr~tflpl~  303 (531)
                      ..++++.+.+. ...+.++|++|+|+++++|+++|+.||+++|| .+++|||++..++..|+++|+..+ .||+||+|++
T Consensus        29 ~~~~~~~l~~~~~~~~~~~g~~g~l~dli~v~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~  108 (213)
T 2wd5_B           29 INKVLEHFRRKGINQHVQNGYHGIVMNNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLN  108 (213)
T ss_dssp             HHHHHHHHHHHTCCHHHHTTEEEEGGGSEECCGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETT
T ss_pred             HHHHHHHHHhhhhhhccCCCceeeHHHhcccCHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECc
Confidence            34455555432 01123578999999999999999999999999 999999999999999999999987 9999999998


Q ss_pred             CCCcccccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063        304 KMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS  362 (531)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~  362 (531)
                      .+.+....   .+.. .++.++.++|+| ++.|.+++.++||++++|+|++.|..+.+.
T Consensus       109 ~~~~~~~~---~~~~-~~~~~l~~~v~~-~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~  162 (213)
T 2wd5_B          109 KLDVRDTA---YPET-NDAIPMISKLRY-NPRFDKAFKHVFGKTLICRSMEVSTQLARA  162 (213)
T ss_dssp             TCCCCCCC---CCCC-SSEEEGGGGCEE-CGGGHHHHHHHHTTEEEESSHHHHHHHHHH
T ss_pred             ccCcccCC---CCCC-CCceeHHHHccC-cHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence            86543210   0111 233347799999 688999999999999999999999877643

>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=99.92  E-value=1.2e-25  Score=209.25  Aligned_cols=118  Identities=28%  Similarity=0.472  Sum_probs=99.0

Q ss_pred             CCC-ccccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCCCC
Q psy14063        243 VSG-ILGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYRTP  319 (531)
Q Consensus       243 ~~g-v~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~  319 (531)
                      ++| ++|+|+++++| +++|+.||+++|| .+++|||++..+|..|+++|+..+.||+||+|++.+.+...+.  ....+
T Consensus        51 ~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~~~--~~~~~  128 (233)
T 2wd5_A           51 YPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDE--KLREL  128 (233)
T ss_dssp             SGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCCCG--GGGGC
T ss_pred             CCCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccCCcch--hccCC
Confidence            678 99999999998 7999999999999 8999999999999999999999999999999999875322110  01112


Q ss_pred             ccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063        320 ENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS  362 (531)
Q Consensus       320 ~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~  362 (531)
                      .++.++.++|.|+++.|.+++.++||++++|+|++.|..+.+.
T Consensus       129 ~g~~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~  171 (233)
T 2wd5_A          129 KGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFG  171 (233)
T ss_dssp             SSCEESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHS
T ss_pred             CCchHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHh
Confidence            3345788999994478999999999999999999999887654

>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}

Probab=99.92  E-value=6.9e-25  Score=191.25  Aligned_cols=116  Identities=19%  Similarity=0.338  Sum_probs=97.9

Q ss_pred             CCccccccccccc-CcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCccccccc-----CcC
Q psy14063        244 SGILGRLGDLGGI-DQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCY-----DKY  316 (531)
Q Consensus       244 ~gv~g~l~~li~v-~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~-----~~~  316 (531)
                      +|++|+|+++++| +++|+.||+++|| .++++||++.++|..||+++  +..||+||+||+.+++......     ...
T Consensus        15 ~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~~~~~~~~~~~~~~~   92 (161)
T 3l51_A           15 NSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISARCIAPETLRVAQNL   92 (161)
T ss_dssp             GGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCCCCCCHHHHHHHHHH
T ss_pred             CccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccccCcCHHHHhhhhhc
Confidence            6799999999999 5899999999999 99999999999999999986  4679999999998865321100     001


Q ss_pred             CCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063        317 RTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS  362 (531)
Q Consensus       317 ~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~  362 (531)
                      ..+++++++.|+|+| ++.|++++.++||+++||+|++.|..+.+.
T Consensus        93 ~~~~~~~~a~dlv~~-d~~~~~a~~~llg~tlv~~dl~~A~~~~~~  137 (161)
T 3l51_A           93 VGPDNVHVALSLVDY-KPELQKGMEFVFGTTFVCNNMDNAKKVAFD  137 (161)
T ss_dssp             HCTTSEEEGGGGEEC-CGGGHHHHHHHHTTCEEESSHHHHHHHHHC
T ss_pred             CCCcchhHHHHHhcC-CHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence            125567789999999 799999999999999999999999987764

>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A

Probab=99.89  E-value=2.2e-23  Score=187.81  Aligned_cols=119  Identities=24%  Similarity=0.407  Sum_probs=99.9

Q ss_pred             CCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcccccccCcCC-CC
Q psy14063        242 RVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKYR-TP  319 (531)
Q Consensus       242 ~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~~~~~~~~~~-~~  319 (531)
                      .++|++|+|+++++|+++|+.||+++|| .++++||++..++..+|++|+.++.||+||+|++.+.+.. ....... .+
T Consensus        28 ~~~g~~g~l~~li~v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~-~~~~~~~~~~  106 (186)
T 1gxj_A           28 RFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-NRISGLENER  106 (186)
T ss_dssp             GCTTEEEEHHHHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCC-CCCTTGGGST
T ss_pred             hhCCcceehhheeccCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCc-ccchhcccCC
Confidence            3678999999999999999999999999 9999999999999999999999999999999999875431 1000011 13


Q ss_pred             ccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063        320 ENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS  362 (531)
Q Consensus       320 ~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~  362 (531)
                      ++.+++.|+|+| ++.|.+++.++||++++|+|++.|..+.+.
T Consensus       107 g~~~~~~dlv~~-~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~  148 (186)
T 1gxj_A          107 GFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDDAIRMKKK  148 (186)
T ss_dssp             TEEEEHHHHCBC-CGGGHHHHHHHHTTCEEESCHHHHHHHHHH
T ss_pred             CchHHHHHHccC-CHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence            445567899999 688999999999999999999999887654

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.73  E-value=4.1e-05  Score=72.35  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=13.6

Q ss_pred             hhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063          6 GKYDEERTEKLTRVQLVETDLKALEPELRKA   36 (531)
Q Consensus         6 ~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a   36 (531)
                      ..+...+.....++..+..++..++.....+
T Consensus         9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~   39 (284)
T 1c1g_A            9 QMLKLDKENALDRADEAEADKKAAEDRSKQL   39 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444433

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.70  E-value=4.4e-05  Score=72.14  Aligned_cols=33  Identities=21%  Similarity=0.055  Sum_probs=18.0

Q ss_pred             hhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHH
Q psy14063          4 LYGKYDEERTEKLTRVQLVETDLKALEPELRKA   36 (531)
Q Consensus         4 ~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a   36 (531)
                      .++.+...+.+....+..+...+..++..+..+
T Consensus        14 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~   46 (284)
T 1c1g_A           14 DKENALDRADEAEADKKAAEDRSKQLEDELVSL   46 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555544

>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}

Probab=98.24  E-value=5e-07  Score=78.09  Aligned_cols=133  Identities=21%  Similarity=0.286  Sum_probs=93.4

Q ss_pred             CCccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHhh---CCCccEEccCCceecCCCceecc--cccc
Q psy14063        318 TPENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGYS---GGGYRMVTLEGAIIEPSETLVAQ--DLNQ  389 (531)
Q Consensus       318 ~~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~~---~~~~~~vt~~G~~~~~~~~~~~~--~~~~  389 (531)
                      .+|.+|++.+++.+++++|+.+++.+||.   .+||++.++|..++..   .++..|++++...  ... +...  ..+.
T Consensus        14 ~~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~~~~GR~tflpL~~i~--~~~-~~~~~~~~~~   90 (161)
T 3l51_A           14 RNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKGELKRRYTIIPLNKIS--ARC-IAPETLRVAQ   90 (161)
T ss_dssp             GGGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHSCCSSCEEEEETTTCC--CCC-CCHHHHHHHH
T ss_pred             cCccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHHhhCCcEEEEECcccc--ccC-cCHHHHhhhh
Confidence            45678899999999558999999999985   6899999999877653   2567777776421  100 0000  0000


Q ss_pred             -cccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccC-CceeEEccccccccccccccCC
Q psy14063        390 -AKRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSG-GGYRMVTLEGAIIEPSGTMSGG  453 (531)
Q Consensus       390 -~~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~-~~~~~vt~~g~~~~~~g~~~gg  453 (531)
                       ...++.+++++++|++++.+     ++|++++||+|++.|.++++.. +++++||++|++++++|+|+||
T Consensus        91 ~~~~~~~~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG  161 (161)
T 3l51_A           91 NLVGPDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG  161 (161)
T ss_dssp             HHHCTTSEEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred             hcCCCcchhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCeEEcCCEEEecC
Confidence             01245556778888887765     7999999999999999877664 4789999999999999999987

>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0

Probab=98.21  E-value=8.4e-07  Score=77.00  Aligned_cols=131  Identities=30%  Similarity=0.407  Sum_probs=97.7

Q ss_pred             CCccccccccceecCchHHHHHHHHhhCC--eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccccc
Q psy14063        318 TPENVPRLIDLIQVQDEKIRLAFYFATRE--TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQA  390 (531)
Q Consensus       318 ~~~~~~~~~d~i~~~~~~~~~~~~~llg~--~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~  390 (531)
                      .+|.+|++.+++.+ +++|+.++..+||.  .+||+|.++|..++.   .  .++..|++++...... .     +.+..
T Consensus        16 ~~Gv~G~v~dLi~v-~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~-~-----~~~~~   88 (166)
T 3l51_B           16 IPGIYGRLGDLGAI-DEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWA-K-----KMSKI   88 (166)
T ss_dssp             STTEEEEGGGSCBC-CGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGT-T-----SCCCC
T ss_pred             CCCceEEHHHheee-CHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECccccccc-c-----ccccc
Confidence            35778899999999 69999999999984  589999999876653   2  3677888876432110 0     00111


Q ss_pred             ccccccCCcccccccc-ccc-----cccCchhHHhhHHHHHhcccc-CCceeEEccccccccccccccCCCc
Q psy14063        391 KRIGYSGGGYRMVTLE-GAI-----IEPSETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGS  455 (531)
Q Consensus       391 ~~~g~~~~~~~~v~~~-~~~-----~l~~~~~~~~~l~~a~~~~~~-~~~~~~vt~~g~~~~~~g~~~gg~~  455 (531)
                      ..++.+.+++++|+++ +.+     ++|++++||+|++.|.++++. .+++++||++|++++++|+|+||+.
T Consensus        89 ~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~  160 (166)
T 3l51_B           89 QTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE  160 (166)
T ss_dssp             CCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred             ccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEECCCEEEeCCEEEECCCc
Confidence            1233344677888874 444     889999999999999987665 3789999999999999999999984

>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1

Probab=98.20  E-value=8.9e-07  Score=80.74  Aligned_cols=157  Identities=22%  Similarity=0.251  Sum_probs=94.2

Q ss_pred             CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccccc
Q psy14063        319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQA  390 (531)
Q Consensus       319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~  390 (531)
                      ++.+|++.+++++ +++|+.+++.+||+   .+||++.+.|..++.   .  .++..|++++...  ...  .....+ .
T Consensus        42 ~g~~g~l~~li~v-~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~--~~~--~~~~~~-~  115 (213)
T 1gxl_A           42 PGLVDVVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLID--GSF--NRISGL-E  115 (213)
T ss_dssp             TTEEEEGGGTCBC-CHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSC--CCC--CCCTTG-G
T ss_pred             CCCceehhheeee-CHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcC--CCC--ccchhh-h
Confidence            3456789999999 79999999999985   578988777655442   2  2335565444211  000  000000 0


Q ss_pred             ccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCccccccccccc
Q psy14063        391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRK  465 (531)
Q Consensus       391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~~~~~~  465 (531)
                      ..+|+++.+.++|++++.+     ++++++++|+|++.|..+.+     . ......+|+..|.+.+.++...++.....
T Consensus       116 ~~~g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~-----~-~~~~~~~VT~~G~~~~~~G~~~gg~~~~~  189 (213)
T 1gxl_A          116 NERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKK-----K-YRLNTRIATLDGELISGRGAITGGREERS  189 (213)
T ss_dssp             GSTTEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHH-----H-TCSSCEEECTTSCEECTTSCEEECCCSSC
T ss_pred             cCCCcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHH-----h-cCCCceEEecCCeEEcCCceEECCCCccc
Confidence            1245555566788776554     78999999999999986321     1 13456789999997765444444432111


Q ss_pred             ccccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        466 ATVSTDTSLVKDLEVKEKRLASLETELRILSQ  497 (531)
Q Consensus       466 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~  497 (531)
                                ..+...++++++++.++..++.
T Consensus       190 ----------~~~l~~~~el~~l~~~l~~~~~  211 (213)
T 1gxl_A          190 ----------SNVFERRIKLKHLEQEMEETER  211 (213)
T ss_dssp             ----------CCTTHHHHHHHHHHHHHC----
T ss_pred             ----------cchhhHHHHHHHHHHHHHHHHh
Confidence                      2244556677777666655544

>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=98.18  E-value=2.2e-06  Score=78.01  Aligned_cols=126  Identities=10%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             ccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH---hh---CCCccEEccCCceecCCCceeccccccc
Q psy14063        320 ENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG---YS---GGGYRMVTLEGAIIEPSETLVAQDLNQA  390 (531)
Q Consensus       320 ~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~---~~---~~~~~~vt~~G~~~~~~~~~~~~~~~~~  390 (531)
                      |.+|++.+++++ +++|+.+++.+||+   .+||++.++|..++   +.   .++..|++++..  .+.. +   ..|  
T Consensus        48 g~~g~l~dli~v-~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~--~~~~-~---~~~--  118 (213)
T 2wd5_B           48 GYHGIVMNNFEC-EPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKL--DVRD-T---AYP--  118 (213)
T ss_dssp             TEEEEGGGSEEC-CGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTC--CCCC-C---CCC--
T ss_pred             CceeeHHHhccc-CHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECccc--Cccc-C---CCC--
Confidence            456788999999 79999999999996   57899887775544   22   234556644321  0000 0   001  


Q ss_pred             ccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcc
Q psy14063        391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSN  456 (531)
Q Consensus       391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~  456 (531)
                      ..+|+++ ..++|++++.+     ++++++++|+|++.|..+.+. .+.++||++|++++++|+|+||+..
T Consensus       119 ~~~~~~~-l~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~-~~~~~VTldG~~~~~~G~~tgG~~~  187 (213)
T 2wd5_B          119 ETNDAIP-MISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARA-FTMDCITLEGDQVSHRGALTGGYYD  187 (213)
T ss_dssp             CCSSEEE-GGGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHH-SSCEEECTTCCEECTTSCEEECCCC
T ss_pred             CCCCcee-HHHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHh-cCceEEeCCCcEECCCeEEECCCCC
Confidence            1123332 34566665544     789999999999999886554 3689999999999999999988743

>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}

Probab=97.94  E-value=4.6e-06  Score=73.62  Aligned_cols=127  Identities=23%  Similarity=0.342  Sum_probs=96.8

Q ss_pred             CCccccccccceecCchH-HHHHHHHhhCC---eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccc
Q psy14063        318 TPENVPRLIDLIQVQDEK-IRLAFYFATRE---TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLN  388 (531)
Q Consensus       318 ~~~~~~~~~d~i~~~~~~-~~~~~~~llg~---~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~  388 (531)
                      .+|.+|++.+++.+ +++ |..+++.+||+   .+||++.++|..++.   .  .++..|++++..  .+.      .. 
T Consensus        33 ~~gv~G~l~dLi~V-~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i--~~~------~~-  102 (189)
T 3nwc_A           33 IGGIYGTLAELIKV-KDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKI--KPK------HV-  102 (189)
T ss_dssp             CCSEEEEHHHHCEE-SCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTC--CCC------CC-
T ss_pred             CCCceEEHHHheee-ChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCcc--ccc------cC-
Confidence            36778899999999 566 99999999985   689999998876553   2  356778877632  110      11 


Q ss_pred             ccccccccCCccccccccccc-----cccCchhHHhhHHHHHhccccCCceeEEccccccccccccccCCCcccccc
Q psy14063        389 QAKRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSGTMSGGGSNPIRG  460 (531)
Q Consensus       389 ~~~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~~~~~~~vt~~g~~~~~~g~~~gg~~~~~~~  460 (531)
                       +..+|++  ++++|++++.+     ++|++++||+|++.|.++ +  +++++||++|++++++|+|+||+...++.
T Consensus       103 -~~~~g~~--a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l-~--~~~r~VTldGd~i~~~G~~tGG~~~~~~~  173 (189)
T 3nwc_A          103 -DSSVGLP--AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPH-I--GKVRMVTIEGELYERSGAITGGHFRARGL  173 (189)
T ss_dssp             -CSCSSEE--GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGG-T--TTSEEEETTSCEECTTSCEECSCSSCCCS
T ss_pred             -CCCCCcE--EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHH-h--CCCeEEeCCCcEEECCEEEEeCCCCCCCc
Confidence             1224554  67788877665     789999999999999887 3  37899999999999999999998654443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.93  E-value=0.0049  Score=57.25  Aligned_cols=10  Identities=20%  Similarity=0.248  Sum_probs=5.0

Q ss_pred             ccCcchHHHH
Q psy14063        255 GIDQKYDIAV  264 (531)
Q Consensus       255 ~v~~~y~~Ai  264 (531)
                      .+||.....|
T Consensus       207 ~lppq~~~~i  216 (256)
T 3na7_A          207 RLNDKIYTEV  216 (256)
T ss_dssp             BCCHHHHHHH
T ss_pred             eeCHHHHHHH
Confidence            3466554444

>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=97.66  E-value=1.4e-05  Score=73.56  Aligned_cols=130  Identities=22%  Similarity=0.308  Sum_probs=88.6

Q ss_pred             Cc-cccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHH---hh--CCCccEEccCCceecCCCceecccccc
Q psy14063        319 PE-NVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIG---YS--GGGYRMVTLEGAIIEPSETLVAQDLNQ  389 (531)
Q Consensus       319 ~~-~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~---~~--~~~~~~vt~~G~~~~~~~~~~~~~~~~  389 (531)
                      +| .+|++.+++++.+++|..+++.+||+   .+||++.++|..++   +.  .++..|++++...  +.. .. ...+ 
T Consensus        52 ~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~--~~~-~~-~~~~-  126 (233)
T 2wd5_A           52 PGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLE--VKP-TD-EKLR-  126 (233)
T ss_dssp             GGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCC--CCC-CC-GGGG-
T ss_pred             CCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccc--cCC-cc-hhcc-
Confidence            45 56778899987458999999999985   57899877765543   22  2446666544311  000 00 0000 


Q ss_pred             cccccccCCccccccc-cccc-----cccCchhHHhhHHHHHhccccC-CceeEEccccccccccccccCCCc
Q psy14063        390 AKRIGYSGGGYRMVTL-EGAI-----IEPSETLVAQDLNQAKRIGYSG-GGYRMVTLEGAIIEPSGTMSGGGS  455 (531)
Q Consensus       390 ~~~~g~~~~~~~~v~~-~~~~-----~l~~~~~~~~~l~~a~~~~~~~-~~~~~vt~~g~~~~~~g~~~gg~~  455 (531)
                       ..+|+ .+++++|.+ ++.+     ++++++++|+|++.|..+.+.. ++.++||++|+++.++|+|+||+.
T Consensus       127 -~~~g~-~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~~  197 (233)
T 2wd5_A          127 -ELKGA-KLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGAS  197 (233)
T ss_dssp             -GCSSC-EESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECHH
T ss_pred             -CCCCc-hHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCEEEeCCeeEeCCCc
Confidence             01232 245677777 4544     7899999999999999876543 368899999999999999998863

>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A

Probab=97.40  E-value=5.6e-05  Score=67.00  Aligned_cols=131  Identities=24%  Similarity=0.310  Sum_probs=92.2

Q ss_pred             CccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceeccccccc
Q psy14063        319 PENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQA  390 (531)
Q Consensus       319 ~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~~  390 (531)
                      ++.++.+.+++++ +++|+.+++.+||.   .+||++.+.|..++.   .  .++..|++++...... .   ....+ .
T Consensus        30 ~g~~g~l~~li~v-~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~-~---~~~~~-~  103 (186)
T 1gxj_A           30 PGLVDVVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-N---RISGL-E  103 (186)
T ss_dssp             TTEEEEHHHHCBC-CGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCC-C---CCTTG-G
T ss_pred             CCcceehhheecc-CHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCc-c---cchhc-c
Confidence            3556778999999 79999999999985   578998877765542   2  2556676544311000 0   00000 0


Q ss_pred             ccccccCCccccccccccc-----cccCchhHHhhHHHHHhcccc-CCceeEEccccccccccccccCCCc
Q psy14063        391 KRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGGS  455 (531)
Q Consensus       391 ~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~-~~~~~~vt~~g~~~~~~g~~~gg~~  455 (531)
                      ...|+++.+.++|++++.+     ++|+++++|+|++.|.++.+. .++.++||++|++++++|+|+||+.
T Consensus       104 ~~~g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~  174 (186)
T 1gxj_A          104 NERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE  174 (186)
T ss_dssp             GSTTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred             cCCCchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeCCCeEEcCCEEEECCCC
Confidence            1245555566778876654     789999999999999876554 4678999999999999999998874

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.31  E-value=0.068  Score=46.00  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH
Q psy14063         68 HETKVQQMEQELTANLESIKKCTD   91 (531)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~~~~   91 (531)
                      +...+..++..+.++...-..++.
T Consensus        22 ~~q~~~~le~El~EFqesSrELE~   45 (189)
T 2v71_A           22 YKQSFQEARDELVEFQEGSRELEA   45 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444443333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.98  E-value=0.2  Score=61.70  Aligned_cols=21  Identities=24%  Similarity=0.172  Sum_probs=9.9

Q ss_pred             chHHHHHHHHhh--CCeEEEcCH
Q psy14063        333 DEKIRLAFYFAT--RETLVAQDL  353 (531)
Q Consensus       333 ~~~~~~~~~~ll--g~~~v~~~l  353 (531)
                      ++.|...++..+  |..++++|.
T Consensus      2216 d~~f~~~LE~ai~fG~pvLienv 2238 (3245)
T 3vkg_A         2216 DSSFMKNLESALRFGCPLLVQDV 2238 (3245)
T ss_dssp             ----HHHHHHHHHHTCCEECCCC
T ss_pred             chhHHHHHHHHHHcCCeEEEccc
Confidence            445555555543  666666665

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.93  E-value=0.27  Score=60.58  Aligned_cols=16  Identities=6%  Similarity=0.100  Sum_probs=8.7

Q ss_pred             cEEecchHHHHHHHHHHHH
Q psy14063        273 YIVTETVEAGEAVIAAVKR  291 (531)
Q Consensus       273 ~ivv~~~~~a~~~i~~Lk~  291 (531)
                      -+++|-...|   ..|+|+
T Consensus      2187 PLlIDPq~Qa---~~WIk~ 2202 (3245)
T 3vkg_A         2187 PLVIDPSGQA---MEFLMN 2202 (3245)
T ss_dssp             EEEECTTSHH---HHHHHH
T ss_pred             eEEEChHHHH---HHHHHH
Confidence            4556655544   455554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.75  E-value=0.2  Score=41.98  Aligned_cols=11  Identities=9%  Similarity=0.329  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q psy14063         69 ETKVQQMEQEL   79 (531)
Q Consensus        69 ~~~~~~~~~~l   79 (531)
                      +..+.+++.++
T Consensus        12 ekQL~E~n~kL   22 (168)
T 3o0z_A           12 QKQLEEANDLL   22 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.55  E-value=0.32  Score=41.83  Aligned_cols=37  Identities=8%  Similarity=0.117  Sum_probs=17.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063         64 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL  100 (531)
Q Consensus        64 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  100 (531)
                      .+.-++.....+..++..++..+.++...-..+..++
T Consensus        11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~EL   47 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAEL   47 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555544444443333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.51  E-value=0.19  Score=38.79  Aligned_cols=69  Identities=10%  Similarity=0.063  Sum_probs=27.6

Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy14063        127 RFECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLAD  195 (531)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~  195 (531)
                      +.++..++.+.+....+...++..+..........+.++..+...+..+...++.+...+......+..
T Consensus         8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee   76 (101)
T 3u1c_A            8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444444444443333333333333333333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.49  E-value=0.3  Score=40.66  Aligned_cols=29  Identities=7%  Similarity=0.134  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14063         68 HETKVQQMEQELTANLESIKKCTDEMESA   96 (531)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (531)
                      +..+++..+.+....+.++..+..++...
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v   54 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTV   54 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.19  E-value=0.27  Score=39.92  Aligned_cols=19  Identities=37%  Similarity=0.590  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy14063        195 DLTREEAKLLDQVEKLARE  213 (531)
Q Consensus       195 ~l~~~~~~~~~~l~~l~~~  213 (531)
                      .+......+...+..+..+
T Consensus       101 ~L~~~kkkle~e~~~Lk~~  119 (129)
T 2fxo_A          101 ELTAKKRKLEDECSELKRD  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.07  E-value=0.2  Score=56.12  Aligned_cols=9  Identities=11%  Similarity=0.113  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q psy14063        199 EEAKLLDQV  207 (531)
Q Consensus       199 ~~~~~~~~l  207 (531)
                      +...+++++
T Consensus      1031 e~~~L~qq~ 1039 (1080)
T 2dfs_A         1031 QNTLLKTEK 1039 (1080)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.94  E-value=0.41  Score=36.99  Aligned_cols=49  Identities=6%  Similarity=0.036  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14063        129 ECDIAKSELEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEELTT  177 (531)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~  177 (531)
                      ++..++.+.+....+...++..+...+......+..+..+...+..+..
T Consensus        10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~   58 (101)
T 3u59_A           10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED   58 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.85  E-value=0.45  Score=36.74  Aligned_cols=25  Identities=8%  Similarity=0.232  Sum_probs=8.9

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14063        137 LEIFLSTQSKETKKLADLEANLEKV  161 (531)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~i~~~  161 (531)
                      +..++........+...+...+...
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~   35 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQA   35 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.40  E-value=0.97  Score=37.57  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=14.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14063         62 MKNLGEHETKVQQMEQELTANLESIKKCTDEMES   95 (531)
Q Consensus        62 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (531)
                      +..+.......+....++..++..+......+..
T Consensus        27 E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs   60 (155)
T 2efr_A           27 KKLLERAEERAELSEGKSAELEEELKTVTNNLKS   60 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3334444444444444444444444444444333

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=95.09  E-value=0.9  Score=41.57  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             CCCccccccccc-ccCcchHHHHHHHhc-cCCcEEecchHHHHH
Q psy14063        243 VSGILGRLGDLG-GIDQKYDIAVSTACG-ALNYIVTETVEAGEA  284 (531)
Q Consensus       243 ~~gv~g~l~~li-~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~  284 (531)
                      |.|+.  |+++. +|+-.-+..+++.+| ...+|||.|..++..
T Consensus       120 ~GGvl--LseiYDDI~ieDApyfsAlyGpar~AIVV~Dl~~~~~  161 (302)
T 3ibp_A          120 FGGVL--LSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTE  161 (302)
T ss_dssp             SSSEE--HHHHSTTCCTTTHHHHHHHTGGGGSEEECSSCHHHHH
T ss_pred             hCCEe--hhhhhcCCChhhHHHHHHHhcccceeeEeCCHHHHHH
Confidence            45543  34433 244445566788899 889999999988764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.07  E-value=0.47  Score=49.79  Aligned_cols=15  Identities=7%  Similarity=0.047  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q psy14063        204 LDQVEKLAREVSEKR  218 (531)
Q Consensus       204 ~~~l~~l~~~l~~~~  218 (531)
                      .++...+..++.++.
T Consensus       564 ~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          564 RQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.47  E-value=1.6  Score=35.33  Aligned_cols=19  Identities=5%  Similarity=0.237  Sum_probs=7.3

Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q psy14063         65 LGEHETKVQQMEQELTANL   83 (531)
Q Consensus        65 ~~~~~~~~~~~~~~l~~~~   83 (531)
                      +.....++..+...+....
T Consensus        15 ~~~~~eel~~lke~l~k~e   33 (129)
T 2fxo_A           15 MASMKEEFTRLKEALEKSE   33 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.46  E-value=0.34  Score=50.85  Aligned_cols=41  Identities=27%  Similarity=0.406  Sum_probs=16.7

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        173 EELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLARE  213 (531)
Q Consensus       173 ~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~  213 (531)
                      +.++.+...++..++..+..+.+++++......++.++...
T Consensus       540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444444444444433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.00  E-value=3  Score=31.32  Aligned_cols=42  Identities=14%  Similarity=0.236  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy14063        144 QSKETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESE  185 (531)
Q Consensus       144 ~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~  185 (531)
                      ......++..+...+..-...-...+.....+..+++++...
T Consensus        21 ~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas   62 (97)
T 2eqb_B           21 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   62 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444333333333333334444444444444433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.08  E-value=4  Score=30.94  Aligned_cols=74  Identities=16%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ  222 (531)
Q Consensus       149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~  222 (531)
                      ..+..++..-..+...+..++.+...+...+..++.+...+...-...+...+....++-.+..+..++..++.
T Consensus        11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~   84 (96)
T 3q8t_A           11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR   84 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444455555555555555555555555555555555555555555555555555555544

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=91.05  E-value=4.2  Score=31.14  Aligned_cols=43  Identities=16%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        179 VPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESM  221 (531)
Q Consensus       179 ~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~  221 (531)
                      +.-++.+..-....+..-+.....+..+..++..++..++.+.
T Consensus        64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            3344444444444444444445555555555555555444443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=90.39  E-value=6.7  Score=32.34  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        149 KKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQ  206 (531)
Q Consensus       149 ~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~  206 (531)
                      .++..+...+...............+...++..++..+.....+.......+..+...
T Consensus        52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEee  109 (147)
T 2b9c_A           52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEE  109 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=89.89  E-value=5.2  Score=30.31  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=15.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        137 LEIFLSTQSKETKKLADLEANLEKVQTTLTERKTLCEEL  175 (531)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~i~~~e~~l~~~~~~l~~l  175 (531)
                      +..+......+..++..+...-..+...|..++.+...+
T Consensus        13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L   51 (96)
T 3q8t_A           13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL   51 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444333333343333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.83  E-value=2.4  Score=41.97  Aligned_cols=90  Identities=8%  Similarity=0.049  Sum_probs=51.2

Q ss_pred             hHHhhhhHHHHHHHhhccHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy14063         13 TEKLTRVQLVETDLKALEPELRKAVNFL-----ELENCVQRKH-NEIYQYERY-VNMKNLGEHETKVQQMEQELTANLES   85 (531)
Q Consensus        13 ~~~~~~~~~~e~~~~~Le~~~~~a~~~~-----~~~~~l~~l~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (531)
                      ....++|+.+..++..+.+-...+..|.     .++.++.... +.-...+|. ++++.+..++.++...-.+|+.|+..
T Consensus        60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn  139 (562)
T 3ghg_A           60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN  139 (562)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666666655555554332     2222222222 122344555 66677777777777766777777777


Q ss_pred             HHHhHHHHHHHHHHHHH
Q psy14063         86 IKKCTDEMESAKSELKT  102 (531)
Q Consensus        86 ~~~~~~~~~~~~~~~~~  102 (531)
                      |..+..+|+.++..+..
T Consensus       140 Ledq~~kIQRLEvDIdi  156 (562)
T 3ghg_A          140 VRAQLVDMKRLEVDIDI  156 (562)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777666543

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=89.04  E-value=8.6  Score=31.68  Aligned_cols=76  Identities=12%  Similarity=0.168  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        147 ETKKLADLEANLEKVQTTLTERKTLCEELTTRVPAMESEIAESRARLADLTREEAKLLDQVEKLAREVSEKRESMQ  222 (531)
Q Consensus       147 ~~~~i~~~~~~i~~~e~~l~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~~~  222 (531)
                      ++++-......+..++..+........+...++.....++..+...+.............+..+...+...-+.+.
T Consensus        43 lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlK  118 (147)
T 2b9c_A           43 IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLK  118 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555444444444445555555555555555555544444444455544444444444433

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=88.76  E-value=6.2  Score=29.68  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             hhhhhHHHHHhHHhhhhHHHHHHHhhccHHHHHHH
Q psy14063          3 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV   37 (531)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~e~~~~~Le~~~~~a~   37 (531)
                      +.+..||+.+...+++++.++.+...|+.++....
T Consensus         9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~   43 (93)
T 3s4r_A            9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLK   43 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999999999998876553

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.20  E-value=9.9  Score=31.38  Aligned_cols=33  Identities=9%  Similarity=-0.014  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        186 IAESRARLADLTREEAKLLDQVEKLAREVSEKR  218 (531)
Q Consensus       186 l~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~  218 (531)
                      ...++.+...++..+......+..++.++..++
T Consensus       110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A          110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444444444333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.17  E-value=22  Score=35.83  Aligned_cols=36  Identities=14%  Similarity=0.069  Sum_probs=15.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14063         65 LGEHETKVQQMEQELTANLESIKKCTDEMESAKSEL  100 (531)
Q Consensus        65 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  100 (531)
                      +...+.+...++.+..+++..+.............+
T Consensus       355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~  390 (487)
T 3oja_A          355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL  390 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            333333333444444444444444444444443333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=87.02  E-value=8.7  Score=29.42  Aligned_cols=31  Identities=16%  Similarity=0.042  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        190 RARLADLTREEAKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       190 ~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~~  220 (531)
                      +.+..-.+.....-+...+.+..+...+..+
T Consensus        68 kaQv~IY~~DF~aERadREkl~~eKe~L~~q   98 (110)
T 2v4h_A           68 KAQADIYKADFQAERHAREKLVEKKEYLQEQ   98 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence            3333333333333333333333333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.71  E-value=14  Score=30.51  Aligned_cols=20  Identities=15%  Similarity=0.107  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy14063        201 AKLLDQVEKLAREVSEKRES  220 (531)
Q Consensus       201 ~~~~~~l~~l~~~l~~~~~~  220 (531)
                      ..++.+...+..++.+....
T Consensus       111 ~~~e~r~~~L~~ql~e~~~~  130 (154)
T 2ocy_A          111 YAIEILNKRLTEQLREKDTL  130 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=84.86  E-value=10  Score=28.20  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14063        189 SRARLADLTREEAKLLDQVEKLAREVSEKRE  219 (531)
Q Consensus       189 l~~~~~~l~~~~~~~~~~l~~l~~~l~~~~~  219 (531)
                      ....+..-+.....+..+.+.+..++..++.
T Consensus        52 Y~~DF~aERadREkl~~eKe~L~~ql~~lq~   82 (94)
T 3jsv_C           52 YKADFQAERHAREKLVEKKEYLQEQLEQLQR   82 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3333333333333334444444444443333

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=82.26  E-value=16  Score=28.40  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy14063        195 DLTREEAKLLDQVEKLAREVS  215 (531)
Q Consensus       195 ~l~~~~~~~~~~l~~l~~~l~  215 (531)
                      .+...+..+...+..+...+.
T Consensus        75 ~l~~~i~~l~~~i~~l~~~~~   95 (112)
T 1l8d_A           75 NSKNTLAKLIDRKSELERELR   95 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=81.61  E-value=14  Score=27.44  Aligned_cols=16  Identities=13%  Similarity=0.171  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy14063        152 ADLEANLEKVQTTLTE  167 (531)
Q Consensus       152 ~~~~~~i~~~e~~l~~  167 (531)
                      .-++..+.-+..+...
T Consensus        43 ~vLk~Qv~IY~~DF~a   58 (94)
T 3jsv_C           43 PVLKAQADIYKADFQA   58 (94)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=81.02  E-value=8.5  Score=27.11  Aligned_cols=49  Identities=20%  Similarity=0.134  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy14063        477 DLEVKEKRLASLETELRILSQQKMEVETQLNCTGNELKYKKQEYDTCLI  525 (531)
Q Consensus       477 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  525 (531)
                      .+-+|+..+.....++..-+..+.+++.++.+....+..++.++..++.
T Consensus        20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS   68 (72)
T 3nmd_A           20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3566666666666667777777777777777777777777777776643

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.47  E-value=36  Score=33.80  Aligned_cols=10  Identities=20%  Similarity=0.511  Sum_probs=0.0

Q ss_pred             ccccccccCcch
Q psy14063        249 RLGDLGGIDQKY  260 (531)
Q Consensus       249 ~l~~li~v~~~y  260 (531)
                      ||-++  ||..|
T Consensus       209 P~kD~--Vp~~f  218 (562)
T 3ghg_A          209 PVPDL--VPGNF  218 (562)
T ss_dssp             ------------
T ss_pred             ccccc--Cchhh
Confidence            44455  44444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	531
d1gxja_	161	d.215.1.1 (A:) Smc hinge domain {Thermotoga mariti	4e-35
d1gxja_	161	d.215.1.1 (A:) Smc hinge domain {Thermotoga mariti	1e-10

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

 Score =  126 bits (319), Expect = 4e-35
 Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 3/149 (2%)

Query: 237 LKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVG 295
            + + R  G++  + +L  +D+KY +AVS   G     IV   V+  +A++  +K+   G
Sbjct: 10  FEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAG 69

Query: 296 RVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQ 355
           RV ++PLD +    ++          V   +DL++     + +   F    ++V + L+ 
Sbjct: 70  RVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDD 128

Query: 356 AKRIGYS-GGGYRMVTLEGAIIEPSETLV 383
           A R+        R+ TL+G +I     + 
Sbjct: 129 AIRMKKKYRLNTRIATLDGELISGRGAIT 157

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 324 RLIDLIQVQDEKIRLAFYFATRETL---VAQDLNQAKRIGYSGGGYRMVTLEGAIIEPSE 380
            + +LI+V DEK  LA       T    V ++++ AK I       +        I P +
Sbjct: 22  VVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFL---KQNEAGRVTILPLD 77

Query: 381 TLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPS--------ETLVAQDLNQAKRIGYS-G 431
            +       +      G     V L     +           ++V + L+ A R+     
Sbjct: 78  LIDGSFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYR 137

Query: 432 GGYRMVTLEGAIIEPSGTMSGG 453
              R+ TL+G +I   G ++GG
Sbjct: 138 LNTRIATLDGELISGRGAITGG 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	531
d1gxja_	161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	99.94
d1gxja_	161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	98.43

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.4e-27  Score=206.14  Aligned_cols=130  Identities=23%  Similarity=0.380  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhhcCCCCcccccccccccCcchHHHHHHHhc-cCCcEEecchHHHHHHHHHHHHcCCCceeEEeCcCCCcc
Q psy14063        230 LIDFVMQLKSENRVSGILGRLGDLGGIDQKYDIAVSTACG-ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQY  308 (531)
Q Consensus       230 ~l~~l~~~~~~~~~~gv~g~l~~li~v~~~y~~Aie~~lg-~l~~ivv~~~~~a~~~i~~Lk~~~~gr~tflpl~~~~~~  308 (531)
                      .++.+++.  ...++|++|+|+++++|+++|+.||+++|| .++++||+|.++|..||++|+.++.||++|+|++.+.+.
T Consensus         5 gvr~il~~--~~~~~gv~G~v~dli~v~~~y~~Ave~aLG~~l~~vVV~~~~~A~~~i~~lk~~~~Gr~tfipl~~i~~~   82 (161)
T d1gxja_           5 AVRAVFEE--KERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGS   82 (161)
T ss_dssp             HHHHHHHT--GGGCTTEEEEHHHHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCC
T ss_pred             HHHHHHhc--cccCCCceEEHHHhCccCHHHHHHHHHHhhhhhceEEECCHHHHHHHHHHHhhccCceEEEEeccccccc
Confidence            34555543  234789999999999999999999999999 999999999999999999999999999999999987654


Q ss_pred             cccccCcCCCCccccccccceecCchHHHHHHHHhhCCeEEEcCHHHHHHHHhh
Q psy14063        309 HSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYS  362 (531)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~llg~~~v~~~l~~A~~~~~~  362 (531)
                      ....+.....+++.+++.|+|+| ++.|++++.++||++++|+|++.|..+++.
T Consensus        83 ~~~~~~~~~~~~~v~~~~dlV~~-~~~~~~~~~~llg~~~iv~~l~~A~~l~~~  135 (161)
T d1gxja_          83 FNRISGLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDDAIRMKKK  135 (161)
T ss_dssp             CCCCTTGGGSTTEEEEHHHHCBC-CGGGHHHHHHHHTTCEEESCHHHHHHHHHH
T ss_pred             cccccccccCCCcchhHHHhccC-CHHHHHHHHHHcCCEEEECCHHHHHHHHHh
Confidence            32111122345677789999999 799999999999999999999999988765

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=5.1e-08  Score=82.28  Aligned_cols=131  Identities=24%  Similarity=0.311  Sum_probs=101.7

Q ss_pred             CCccccccccceecCchHHHHHHHHhhCC---eEEEcCHHHHHHHHh---h--CCCccEEccCCceecCCCceecccccc
Q psy14063        318 TPENVPRLIDLIQVQDEKIRLAFYFATRE---TLVAQDLNQAKRIGY---S--GGGYRMVTLEGAIIEPSETLVAQDLNQ  389 (531)
Q Consensus       318 ~~~~~~~~~d~i~~~~~~~~~~~~~llg~---~~v~~~l~~A~~~~~---~--~~~~~~vt~~G~~~~~~~~~~~~~~~~  389 (531)
                      .+|.+|.+.|++++ ++.|..+++.+||+   .+||+|.+.|..++.   .  .++..|++++..-.....     ..+.
T Consensus        16 ~~gv~G~v~dli~v-~~~y~~Ave~aLG~~l~~vVV~~~~~A~~~i~~lk~~~~Gr~tfipl~~i~~~~~~-----~~~~   89 (161)
T d1gxja_          16 FPGLVDVVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNR-----ISGL   89 (161)
T ss_dssp             CTTEEEEHHHHCBC-CGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCCCC-----CTTG
T ss_pred             CCCceEEHHHhCcc-CHHHHHHHHHHhhhhhceEEECCHHHHHHHHHHHhhccCceEEEEecccccccccc-----cccc
Confidence            35778899999999 79999999999995   799999999987763   2  366778877633211100     0011


Q ss_pred             cccccccCCccccccccccc-----cccCchhHHhhHHHHHhcccc-CCceeEEccccccccccccccCCC
Q psy14063        390 AKRIGYSGGGYRMVTLEGAI-----IEPSETLVAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSGTMSGGG  454 (531)
Q Consensus       390 ~~~~g~~~~~~~~v~~~~~~-----~l~~~~~~~~~l~~a~~~~~~-~~~~~~vt~~g~~~~~~g~~~gg~  454 (531)
                      ...+|+++++.++|++++.+     ++|++++||+|++.|..+++. ..++++||++|++++++|.|+||.
T Consensus        90 ~~~~~~v~~~~dlV~~~~~~~~~~~~llg~~~iv~~l~~A~~l~~~~~~~~~~VT~dGd~~~~~G~i~GG~  160 (161)
T d1gxja_          90 ENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGR  160 (161)
T ss_dssp             GGSTTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEE
T ss_pred             ccCCCcchhHHHhccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCcEECCCeeEeCCC
Confidence            34567777888889887766     789999999999999987665 356889999999999999999885