Psyllid ID: psy1411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDAIKKKMQAMKMEKDsamdkadtcegqakdanlradkvevdldTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY
Flexible Loop (DISEMBL)
MDAIKKKMQAMKMEKDSAMDKADTcegqakdanlradkvevdldttkknLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLekseersgtataKLAEASQAADEANRMCKVLEnrsqqdeeRMDQLTNQLKEARLLaedadaksdevsrklafvedelevaedrvksgdakIMELEEELKvvgnslkslevseEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQkevdrledelglnkdryksladeMDSTFAELAGY
Low Complexity Region (SEG)
MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLeerekalaaaesevaalNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKeaearaefaeKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY
Disordered region (IsUnstruct)
******************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MDAIKKKMQAMKMEKDSAM***********************************************************************************************************************************VSRKLAF****************************************************************************************************DEMDSTFAELAGY
Disordered Region (DISEMBL)
*************************EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEE**************************NRMCKVLENR*********QLTNQLKEARLLAE**********RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL***********EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY
Disordered Region (DISPRO)
MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxADTCEGQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGTATAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMDSTFAELAGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q1HPU0	284	Tropomyosin-1 OS=Bombyx m	N/A	N/A	1.0	0.950	0.823	1e-114
Q8T380	284	Tropomyosin OS=Lepisma sa	N/A	N/A	1.0	0.950	0.785	1e-110
P09491	284	Tropomyosin-2 OS=Drosophi	yes	N/A	1.0	0.950	0.75	1e-110
A2V735	284	Tropomyosin OS=Chionoecet	N/A	N/A	1.0	0.950	0.679	7e-88
O44119	284	Tropomyosin OS=Homarus am	N/A	N/A	1.0	0.950	0.676	9e-88
P86704	284	Tropomyosin OS=Pandalus b	N/A	N/A	1.0	0.950	0.669	1e-86
A1KYZ2	284	Tropomyosin OS=Penaeus mo	N/A	N/A	1.0	0.950	0.665	2e-85
Q1HPQ0	285	Tropomyosin-2 OS=Bombyx m	N/A	N/A	0.988	0.936	0.672	3e-85
Q9UB83	284	Tropomyosin OS=Periplanet	N/A	N/A	1.0	0.950	0.654	3e-83
Q23939	284	Tropomyosin OS=Dermatopha	N/A	N/A	1.0	0.950	0.637	2e-82

>sp|Q1HPU0|TPM1_BOMMO Tropomyosin-1 OS=Bombyx mori PE=1 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/284 (82%), Positives = 248/284 (87%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MDAIKKKMQAMK+EKD+AMDKADTCE QA+DANLRA+KV              E DL   
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDKADTCEQQARDANLRAEKVNEEVRELQKKLAQVEEDLILN 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K  L+QA KDLEE+EK L A E+EVAALNRKVQ IEEDLEKSEERSGTA  KL EA Q+A
Sbjct: 61  KNKLEQANKDLEEKEKQLTATEAEVAALNRKVQQIEEDLEKSEERSGTAQQKLLEAQQSA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE NRMCKVLENR+QQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DENNRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSGDAKI ELEEELKVVGNSLKSLEVSEEKANQRVEE+K+Q+K L  KLKEAEARAE
Sbjct: 181 DRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRVEEFKKQLKTLTGKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           +AEKTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 YAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.
Bombyx mori (taxid: 7091)

>sp|Q8T380|TPM_LEPSA Tropomyosin OS=Lepisma saccharina PE=2 SV=1

 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/284 (78%), Positives = 245/284 (86%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           M+AIKKKMQAMK+EKD+AMDKAD  E QA+DAN +ADK              VE D  TT
Sbjct: 1   MEAIKKKMQAMKLEKDNAMDKADALEAQARDANRKADKILEEVQDLKKKPSQVETDFTTT 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+NL  A K+LE++EK L   ESEVA+LNRKVQMIEE+LE+SEER GTA  KL EAS AA
Sbjct: 61  KENLATANKNLEDKEKTLTNTESEVASLNRKVQMIEENLERSEERLGTALTKLGEASHAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DEA+RMCKVLENRSQQDEERMDQLTNQLKEAR+LAEDAD KSDEVSRK+A VED+LEVAE
Sbjct: 121 DEASRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADGKSDEVSRKMAQVEDDLEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSGD+KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIK L VKLKEAEARAE
Sbjct: 181 DRVKSGDSKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKTLTVKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           +AEK VKKLQKEVDRLEDELG+NKDRY++LADEMD TFAEL+GY
Sbjct: 241 YAEKYVKKLQKEVDRLEDELGINKDRYRALADEMDQTFAELSGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Lepisma saccharina (taxid: 50586)

>sp|P09491|TPM2_DROME Tropomyosin-2 OS=Drosophila melanogaster GN=Tm2 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/284 (75%), Positives = 240/284 (84%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+A+DKADTCE QAKDAN RADK              VE+DL T 
Sbjct: 1   MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTA 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L++A  +LEE+EK L A ESEVA  NRKVQ IEEDLEKSEERS TA  KL EA+Q+A
Sbjct: 61  KEQLEKANTELEEKEKLLTATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE NRMCKVLENRSQQDEERMDQLTNQLKEAR+LAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADTKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRV+SG++KIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KR++K L++KLKEAE RAE
Sbjct: 181 DRVRSGESKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
            AEK VK+LQKEVDRLED L   K++YK++ D++D TFAEL GY
Sbjct: 241 HAEKQVKRLQKEVDRLEDRLFNEKEKYKAICDDLDQTFAELTGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction. May also regulate motor systems required to maintain nuclear integrity and apico-basal polarity during embryogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|A2V735|TPM_CHIOP Tropomyosin OS=Chionoecetes opilio GN=TM1 PE=1 SV=1

 Score =  323 bits (828), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 193/284 (67%), Positives = 227/284 (79%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+AMDKADT E Q K+ANLRA+K              VE +LD  
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDKADTLEQQNKEANLRAEKTEEEIRANQKKSQLVENELDHA 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           ++ L  A   L E+EKA A AE EVAALNR++Q++EEDLE+SEER  TAT KLAEASQAA
Sbjct: 61  QEQLSAATHKLVEKEKAFANAEGEVAALNRRIQLLEEDLERSEERLNTATTKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ RM KVLENRS  DEERMD L NQLKEAR LAE+AD K DEV+RKLA VE +LE AE
Sbjct: 121 DESERMRKVLENRSLSDEERMDALENQLKEARFLAEEADRKYDEVARKLAMVEADLERAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           +R +SG++KI+ELEEEL+VVGN+LKSLEVSEEKANQR E YK QIK LA KLK AEARAE
Sbjct: 181 ERAESGESKIVELEEELRVVGNNLKSLEVSEEKANQREETYKEQIKTLANKLKAAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAE++V+KLQKEVDRLEDEL   K++YK++ADEMD  F+EL+G+
Sbjct: 241 FAERSVQKLQKEVDRLEDELVNEKEKYKNIADEMDQAFSELSGF 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Chionoecetes opilio (taxid: 41210)

>sp|O44119|TPM_HOMAM Tropomyosin OS=Homarus americanus GN=TM1 PE=1 SV=1

 Score =  323 bits (828), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 192/284 (67%), Positives = 228/284 (80%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+AMD+ADT E Q K+AN+RA+K              VE +LD  
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDRADTLEQQNKEANIRAEKTEEEIRITHKKMQQVENELDQV 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           ++ L  A   LEE+EKAL  AE EVAALNR++Q++EEDLE+SEER  TAT KLAEASQAA
Sbjct: 61  QEQLSLANTKLEEKEKALQNAEGEVAALNRRIQLLEEDLERSEERLNTATTKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ RM KVLENRS  DEERMD L NQLKEAR LAE+AD K DEV+RKLA VE +LE AE
Sbjct: 121 DESERMRKVLENRSLSDEERMDALENQLKEARFLAEEADRKYDEVARKLAMVEADLERAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           +R ++G++KI+ELEEEL+VVGN+LKSLEVSEEKANQR E YK QIK LA KLK AEARAE
Sbjct: 181 ERAETGESKIVELEEELRVVGNNLKSLEVSEEKANQREEAYKEQIKTLANKLKAAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAE++V+KLQKEVDRLEDEL   K++YKS+ DE+D TF+EL+GY
Sbjct: 241 FAERSVQKLQKEVDRLEDELVNEKEKYKSITDELDQTFSELSGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Homarus americanus (taxid: 6706)

>sp|P86704|TPM_PANBO Tropomyosin OS=Pandalus borealis GN=TM1 PE=1 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/284 (66%), Positives = 230/284 (80%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+AMD+ADT E Q K+AN RA+K              +E DLD+ 
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDRADTLEQQNKEANNRAEKSEEEVFGLQKKLQQLENDLDSV 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           ++ L +A + LEE++KAL+ AE EVAALNR++Q++EEDLE+SEER  TAT KLAEASQAA
Sbjct: 61  QEALLKANQHLEEKDKALSNAEGEVAALNRRIQLLEEDLERSEERLNTATTKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ RM KVLENRS  DEERMD L NQLKEAR LAE+AD K DEV+RKLA VE +LE AE
Sbjct: 121 DESERMRKVLENRSLSDEERMDALENQLKEARFLAEEADRKYDEVARKLAMVEADLERAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           +R ++G++KI+ELEEEL+VVGN+LKSLEVSEEKANQR E YK QIK L  KLK AEARAE
Sbjct: 181 ERAETGESKIVELEEELRVVGNNLKSLEVSEEKANQREEAYKEQIKTLTNKLKAAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAE++V+KLQKEVDRLEDEL   K++YKS+ DE+D TF+EL+GY
Sbjct: 241 FAERSVQKLQKEVDRLEDELVNEKEKYKSITDELDQTFSELSGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Pandalus borealis (taxid: 6703)

>sp|A1KYZ2|TPM_PENMO Tropomyosin OS=Penaeus monodon GN=TM1 PE=1 SV=1

 Score =  315 bits (807), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 189/284 (66%), Positives = 228/284 (80%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+AMD+ADT E Q K+AN RA+K              +E DLD  
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDRADTLEQQNKEANNRAEKSEEEVHNLQKRMQQLENDLDQV 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           +++L +A   L E++KAL+ AE EVAALNR++Q++EEDLE+SEER  TAT KLAEASQAA
Sbjct: 61  QESLLKANIQLVEKDKALSNAEGEVAALNRRIQLLEEDLERSEERLNTATTKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ RM KVLENRS  DEERMD L NQLKEAR LAE+AD K DEV+RKLA VE +LE AE
Sbjct: 121 DESERMRKVLENRSLSDEERMDALENQLKEARFLAEEADRKYDEVARKLAMVEADLERAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           +R ++G++KI+ELEEEL+VVGN+LKSLEVSEEKANQR E YK QIK L  KLK AEARAE
Sbjct: 181 ERAETGESKIVELEEELRVVGNNLKSLEVSEEKANQREEAYKEQIKTLTNKLKAAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAE++V+KLQKEVDRLEDEL   K++YKS+ DE+D TF+EL+GY
Sbjct: 241 FAERSVQKLQKEVDRLEDELVNEKEKYKSITDELDQTFSELSGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Penaeus monodon (taxid: 6687)

>sp|Q1HPQ0|TPM2_BOMMO Tropomyosin-2 OS=Bombyx mori PE=1 SV=1

 Score =  315 bits (806), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/281 (67%), Positives = 227/281 (80%), Gaps = 14/281 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+A+D+A  CE QAKDANLRA+K              +E +LD T
Sbjct: 1   MDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQT 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           +++L Q    LEE+EKAL  AESEVAALNR++Q++EEDLE+SEER  TATAKL+EASQAA
Sbjct: 61  QESLMQVNGKLEEKEKALQNAESEVAALNRRIQLLEEDLERSEERLATATAKLSEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ R  KVLENRS  DEERMD L NQLKEAR LAE+AD K DEV+RKLA VE +LE AE
Sbjct: 121 DESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           +R +SG++KI+ELEEEL+VVGN+LKSLEVSEEKANQR EEYK QIK L  +LKEAEARAE
Sbjct: 181 ERAESGESKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
           FAE++V+KLQKEVDRLEDEL   K++YK + D++D+ F EL
Sbjct: 241 FAERSVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 281

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Bombyx mori (taxid: 7091)

>sp|Q9UB83|TPM_PERAM Tropomyosin OS=Periplaneta americana PE=1 SV=1

 Score =  308 bits (789), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 186/284 (65%), Positives = 225/284 (79%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+AMD A  CE QA+DANLRA+K              +E DLD T
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDCALLCEQQARDANLRAEKAEEEARSLQKKIQQIENDLDQT 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
            + L Q    L+E++KAL  AESEVAALNR++Q++EEDLE+SEER  TATAKLAEASQA 
Sbjct: 61  MEQLMQVNAKLDEKDKALQNAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAV 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ R  K+LE++   DEERMD L NQLKEAR +AE+AD K DEV+RKLA VE +LE AE
Sbjct: 121 DESERARKILESKGLADEERMDALENQLKEARFMAEEADKKYDEVARKLAMVEADLERAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           +R +SG++KI+ELEEEL+VVGN+LKSLEVSEEKAN R EEYK+QIK L  +LKEAEARAE
Sbjct: 181 ERAESGESKIVELEEELRVVGNNLKSLEVSEEKANLREEEYKQQIKTLTTRLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAE++V+KLQKEVDRLEDEL   K++YK + D++D TF ELAGY
Sbjct: 241 FAERSVQKLQKEVDRLEDELVHEKEKYKFICDDLDMTFTELAGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Periplaneta americana (taxid: 6978)

>sp|Q23939|TPM_DERFA Tropomyosin OS=Dermatophagoides farinae PE=1 SV=2

 Score =  305 bits (782), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/284 (63%), Positives = 228/284 (80%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           M+AIKKKMQAMK+EKD+A+D+A+  E +A+DANLRA+K              +E +LD  
Sbjct: 1   MEAIKKKMQAMKLEKDNAIDRAEIAEQKARDANLRAEKSEEEVRALQKKIQQIENELDQV 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           ++ L  A   LEE+EKAL  AE +VAALNR++Q+IEEDLE+SEER   ATAKL EASQ+A
Sbjct: 61  QEQLSAANTKLEEKEKALQTAEGDVAALNRRIQLIEEDLERSEERLKIATAKLEEASQSA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ RM K+LE+RS  DEERMD L NQLKEAR++AEDAD K DEV+RKLA VE +LE AE
Sbjct: 121 DESERMRKMLEHRSITDEERMDGLENQLKEARMMAEDADRKYDEVARKLAMVEADLERAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           +R ++G++KI+ELEEEL+VVGN+LKSLEVSEEKA QR E Y++QI+ +  KLKEAEARAE
Sbjct: 181 ERAETGESKIVELEEELRVVGNNLKSLEVSEEKAQQREEAYEQQIRIMTAKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAE++V+KLQKEVDRLEDEL   K++YKS++DE+D TFAEL GY
Sbjct: 241 FAERSVQKLQKEVDRLEDELVHEKEKYKSISDELDQTFAELTGY 284

Tropomyosin, in association with the troponin complex, plays a central role in the calcium dependent regulation of muscle contraction.

Dermatophagoides farinae (taxid: 6954)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
193704626	284	PREDICTED: tropomyosin-2-like isoform 1	1.0	0.950	0.873	1e-122
340723822	284	PREDICTED: tropomyosin-1-like isoform 1	1.0	0.950	0.848	1e-118
66522386	284	PREDICTED: tropomyosin-1-like [Apis mell	1.0	0.950	0.845	1e-117
383857503	284	PREDICTED: tropomyosin-1-like [Megachile	1.0	0.950	0.845	1e-117
322792013	296	hypothetical protein SINV_05747 [Solenop	1.0	0.912	0.838	1e-117
156545922	284	PREDICTED: tropomyosin-1-like [Nasonia v	1.0	0.950	0.848	1e-117
307196973	284	Tropomyosin-1 [Harpegnathos saltator]	1.0	0.950	0.841	1e-117
390179484	284	tropomyosin 2, isoform B [Drosophila pse	1.0	0.950	0.799	1e-116
24647095	284	tropomyosin 2, isoform B [Drosophila mel	1.0	0.950	0.792	1e-116
194900974	284	GG16909 [Drosophila erecta] gi|190651733	1.0	0.950	0.788	1e-115

>gi|193704626|ref|XP_001947820.1| PREDICTED: tropomyosin-2-like isoform 1 [Acyrthosiphon pisum]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/284 (87%), Positives = 257/284 (90%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MDAIKKKMQAMKMEKDSAMDKADTCEGQ+KDANLRADKV              E DLDT 
Sbjct: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQSKDANLRADKVNEDVRDCQKKLTQVESDLDTN 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K  L++A+K LE+REKAL AAESEVAALNRKVQMIEEDLE+SEERS  A +KLAEASQAA
Sbjct: 61  KNKLEEAIKQLEDREKALTAAESEVAALNRKVQMIEEDLERSEERSQAAASKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DESQRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSGD+KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYK QIKQL VKLKEAEARAE
Sbjct: 181 DRVKSGDSKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKHQIKQLTVKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY
Sbjct: 241 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 284

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723822|ref|XP_003400287.1| PREDICTED: tropomyosin-1-like isoform 1 [Bombus terrestris] gi|340723824|ref|XP_003400288.1| PREDICTED: tropomyosin-1-like isoform 2 [Bombus terrestris] gi|350406093|ref|XP_003487651.1| PREDICTED: tropomyosin-1-like [Bombus impatiens]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/284 (84%), Positives = 256/284 (90%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MDAIKKKMQAMK+EKD+AMDKAD CEGQAK+AN+RADKV              E DL   
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDKADACEGQAKEANMRADKVNEEVGELQKKLTQVEADLQAN 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ LDQA KDLEE+EKAL  AESEVAALNRKVQ+IEEDLE+SEER  TATAKLAEASQAA
Sbjct: 61  KQALDQANKDLEEKEKALTNAESEVAALNRKVQLIEEDLERSEERLNTATAKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE++RMCKVLENR+QQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DESSRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSG+AKIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KRQ+K L VKLKEAEARAE
Sbjct: 181 DRVKSGEAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKRQLKTLTVKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAEKTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 FAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66522386|ref|XP_391961.2| PREDICTED: tropomyosin-1-like [Apis mellifera]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 257/284 (90%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MDAIKKKMQAMK+EKD+AMDKAD CE QAK+AN+RADKV              E DL+  
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDKADACEAQAKEANMRADKVNEEVGELQKKLAQVEGDLEAN 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+NL+QA KDLEE+EKAL  AESEVAALNRKVQ+IEEDLE+SEER  TATAKLAEASQAA
Sbjct: 61  KQNLEQANKDLEEKEKALTNAESEVAALNRKVQLIEEDLERSEERLNTATAKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE++RMCKVLENR+QQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DESSRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSG+AKIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KRQ+K L VKLKEAEARAE
Sbjct: 181 DRVKSGEAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKRQLKTLTVKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAEKTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 FAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857503|ref|XP_003704244.1| PREDICTED: tropomyosin-1-like [Megachile rotundata]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 257/284 (90%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MDAIKKKMQAMK+EKD+AMDKAD CEGQAK+AN+RADKV              E DL+  
Sbjct: 1   MDAIKKKMQAMKLEKDNAMDKADACEGQAKEANMRADKVLEEVSELQKKLTQVEGDLEAN 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L+QA KDLEE+EKAL  AESEVAALNRKVQ+IEEDLE+SEER  TATAKLAEASQAA
Sbjct: 61  KQALEQANKDLEEKEKALTNAESEVAALNRKVQLIEEDLERSEERLNTATAKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE++RMCKVLENR+QQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DESSRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSG+AKIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KRQ+K L VKLKEAEARAE
Sbjct: 181 DRVKSGEAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKRQLKTLTVKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAEKTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 FAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792013|gb|EFZ16118.1| hypothetical protein SINV_05747 [Solenopsis invicta]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/284 (83%), Positives = 256/284 (90%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MD IKKKMQAMK+EKD+AMDKADTCEGQAKDAN+RADKV              E DL+  
Sbjct: 13  MDVIKKKMQAMKLEKDNAMDKADTCEGQAKDANMRADKVLEEVGDQRKKLAQVEADLEAN 72

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L+QA KDLE+REK+L  AESEVAALNRKVQ+IEEDLE+SEER  TATAKL EASQAA
Sbjct: 73  KQALEQANKDLEDREKSLTNAESEVAALNRKVQLIEEDLERSEERLNTATAKLTEASQAA 132

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE++RMCKVLENR+QQDEERMDQLTNQLKEAR+LAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 133 DESSRMCKVLENRAQQDEERMDQLTNQLKEARMLAEDADGKSDEVSRKLAFVEDELEVAE 192

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSG+AKIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KRQ+K L VKLKEAEARAE
Sbjct: 193 DRVKSGEAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKRQLKTLTVKLKEAEARAE 252

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAEKTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 253 FAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 296

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545922|ref|XP_001599003.1| PREDICTED: tropomyosin-1-like [Nasonia vitripennis]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/284 (84%), Positives = 255/284 (89%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MDAIKKKMQAMK+EKD+A DKAD CEGQAK+AN+RADKV              E DL T 
Sbjct: 1   MDAIKKKMQAMKLEKDNAQDKADVCEGQAKEANMRADKVNEEVQDLTKKLSQVENDLITN 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K NL+QA KDLEEREK+L  AESEVAALNRKVQ+IEEDLE+SEER  TATAKLAEASQAA
Sbjct: 61  KANLEQANKDLEEREKSLTNAESEVAALNRKVQIIEEDLERSEERLNTATAKLAEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ RMCKVLENR+QQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DESFRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSG+AKIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KRQ+K L VKLKEAEARAE
Sbjct: 181 DRVKSGEAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKRQLKTLTVKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAEKTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 FAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196973|gb|EFN78348.1| Tropomyosin-1 [Harpegnathos saltator]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/284 (84%), Positives = 256/284 (90%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
           MDAIKKKMQAMK+EKD+A DKADTCEGQAK+ANLRADKV              E DL+  
Sbjct: 1   MDAIKKKMQAMKLEKDNAQDKADTCEGQAKEANLRADKVLEEVGDLTKKLAQVEGDLEAN 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L+QA +DLEEREK+L  AESEVAALNRKVQ+IEEDLE+SEER  TATAKL EASQAA
Sbjct: 61  KQALEQANRDLEEREKSLTNAESEVAALNRKVQLIEEDLERSEERLNTATAKLTEASQAA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE++RMCKVLENR+QQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DESSRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRVKSG+AKIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KRQ+K L VKLKEAEARAE
Sbjct: 181 DRVKSGEAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKRQLKTLTVKLKEAEARAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           FAEKTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 FAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390179484|ref|XP_003736908.1| tropomyosin 2, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859871|gb|EIM52981.1| tropomyosin 2, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/284 (79%), Positives = 247/284 (86%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+A+DKADTCE QAKDAN RADK              VEVDL T 
Sbjct: 1   MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEVDLVTA 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L++A  +LEE+EK L + ESEVA  NRKVQ IEEDLEKSEERS TA  KL EA+Q+A
Sbjct: 61  KEQLEKANAELEEKEKLLTSTESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE NRMCKVLENRSQQDEERMDQLTNQLKEAR+LAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADTKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRV+SG+AKIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KR++K LA+KLKEAE RAE
Sbjct: 181 DRVRSGEAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKREMKTLAIKLKEAEQRAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
            AEK VK+LQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 HAEKQVKRLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24647095|ref|NP_732012.1| tropomyosin 2, isoform B [Drosophila melanogaster] gi|28571726|ref|NP_524361.4| tropomyosin 2, isoform A [Drosophila melanogaster] gi|442619201|ref|NP_001262592.1| tropomyosin 2, isoform F [Drosophila melanogaster] gi|442619203|ref|NP_001262593.1| tropomyosin 2, isoform E [Drosophila melanogaster] gi|195501361|ref|XP_002097765.1| Tm2 [Drosophila yakuba] gi|158704|gb|AAA28973.1| tropomyosin I isoform e [Drosophila melanogaster] gi|23171348|gb|AAN13652.1| tropomyosin 2, isoform A [Drosophila melanogaster] gi|23171349|gb|AAN13653.1| tropomyosin 2, isoform B [Drosophila melanogaster] gi|194183866|gb|EDW97477.1| Tm2 [Drosophila yakuba] gi|206725574|gb|ACI16542.1| FI07209p [Drosophila melanogaster] gi|440217450|gb|AGB95973.1| tropomyosin 2, isoform F [Drosophila melanogaster] gi|440217451|gb|AGB95974.1| tropomyosin 2, isoform E [Drosophila melanogaster]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/284 (79%), Positives = 247/284 (86%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+A+DKADTCE QAKDAN RADK              VE+DL T 
Sbjct: 1   MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTA 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L++A  +LEE+EK L A ESEVA  NRKVQ IEEDLEKSEERS TA  KL EA+Q+A
Sbjct: 61  KEQLEKANTELEEKEKLLTATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE NRMCKVLENRSQQDEERMDQLTNQLKEAR+LAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADTKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRV+SG++KIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KR++K L++KLKEAE RAE
Sbjct: 181 DRVRSGESKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
            AEK VK+LQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 HAEKQVKRLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194900974|ref|XP_001980030.1| GG16909 [Drosophila erecta] gi|190651733|gb|EDV48988.1| GG16909 [Drosophila erecta]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/284 (78%), Positives = 247/284 (86%), Gaps = 14/284 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQAMK+EKD+A+DKADTCE QAKDAN RADK              VE+DL T 
Sbjct: 1   MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTA 60

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L++A  +LEE+EK L + ESEVA  NRKVQ IEEDLEKSEERS TA  KL EA+Q+A
Sbjct: 61  KEQLEKANTELEEKEKLLTSTESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSA 120

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE NRMCKVLENRSQQDEERMDQLTNQLKEAR+LAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct: 121 DENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADTKSDEVSRKLAFVEDELEVAE 180

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           DRV+SG++KIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KR++K L++KLKEAE RAE
Sbjct: 181 DRVRSGESKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAE 240

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
            AEK VK+LQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct: 241 HAEKQVKRLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
UNIPROTKB|Q1HPU0	284	Q1HPU0 "Tropomyosin-1" [Bombyx	1.0	0.950	0.75	9.1e-100
FB|FBgn0004117	284	Tm2 "Tropomyosin 2" [Drosophil	1.0	0.950	0.683	3.9e-92
UNIPROTKB|Q1HPQ0	285	Q1HPQ0 "Tropomyosin-2" [Bombyx	0.988	0.936	0.587	6.3e-76
FB|FBgn0003721	518	Tm1 "Tropomyosin 1" [Drosophil	0.988	0.515	0.548	1.3e-70
WB|WBGene00002978	284	lev-11 [Caenorhabditis elegans	1.0	0.950	0.510	3.2e-65
UNIPROTKB|Q22866	284	lev-11 "Tropomyosin isoforms a	1.0	0.950	0.510	3.2e-65
UNIPROTKB|Q27249	256	lev-11 "Tropomyosin isoforms c	0.929	0.980	0.45	5.6e-52
UNIPROTKB|Q5KR49	284	TPM1 "Tropomyosin alpha-1 chai	0.988	0.940	0.412	3.1e-51
UNIPROTKB|F2Z5B6	284	TPM1 "Tropomyosin alpha-1 chai	0.988	0.940	0.412	3.1e-51
MGI|MGI:98809	284	Tpm1 "tropomyosin 1, alpha" [M	0.988	0.940	0.412	3.1e-51

UNIPROTKB|Q1HPU0 Q1HPU0 "Tropomyosin-1" [Bombyx mori (taxid:7091)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 213/284 (75%), Positives = 224/284 (78%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV--------------EVDLDTT 46
             MDAIKKKMQAMK+EKD+AMDKADTCE QA+DANLRA+KV              E DL   
Sbjct:     1 MDAIKKKMQAMKLEKDNAMDKADTCEQQARDANLRAEKVNEEVRELQKKLAQVEEDLILN 60

Query:    47 KKNLDQAVKDLXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
             K  L+QA KDL                 NRKVQ IEEDLEKSEERSGTA  KL EA Q+A
Sbjct:    61 KNKLEQANKDLEEKEKQLTATEAEVAALNRKVQQIEEDLEKSEERSGTAQQKLLEAQQSA 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE NRMCKVLENR+QQDEERMDQLTNQLKEARLLAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct:   121 DENNRMCKVLENRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             DRVKSGDAKI ELEEELKVVGNSLKSLEVSEEKANQRVEE+K+Q+K L  KLK       
Sbjct:   181 DRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRVEEFKKQLKTLTGKLKEAEARAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
                KTVKKLQKEVDRLEDELG+NKDRYKSLADEMDSTFAELAGY
Sbjct:   241 YAEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAELAGY 284

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0004117 Tm2 "Tropomyosin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 194/284 (68%), Positives = 220/284 (77%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
             MDAIKKKMQAMK+EKD+A+DKADTCE QAKDAN RADK              VE+DL T 
Sbjct:     1 MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTA 60

Query:    47 KKNLDQAVKDLXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
             K+ L++A  +L                 NRKVQ IEEDLEKSEERS TA  KL EA+Q+A
Sbjct:    61 KEQLEKANTELEEKEKLLTATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSA 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE NRMCKVLENRSQQDEERMDQLTNQLKEAR+LAEDAD KSDEVSRKLAFVEDELEVAE
Sbjct:   121 DENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADTKSDEVSRKLAFVEDELEVAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             DRV+SG++KIMELEEELKVVGNSLKSLEVSEEKANQRVEE+KR++K L++KLK       
Sbjct:   181 DRVRSGESKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
                K VK+LQKEVDRLED L   K++YK++ D++D TFAEL GY
Sbjct:   241 HAEKQVKRLQKEVDRLEDRLFNEKEKYKAICDDLDQTFAELTGY 284

GO:0005862 "muscle thin filament tropomyosin" evidence=NAS

GO:0003779 "actin binding" evidence=ISS

GO:0007507 "heart development" evidence=IMP

UNIPROTKB|Q1HPQ0 Q1HPQ0 "Tropomyosin-2" [Bombyx mori (taxid:7091)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 165/281 (58%), Positives = 202/281 (71%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
             MDAIKKKMQAMK+EKD+A+D+A  CE QAKDANLRA+K              +E +LD T
Sbjct:     1 MDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQT 60

Query:    47 KKNLDQAVKDLXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
             +++L Q    L                 NR++Q++EEDLE+SEER  TATAKL+EASQAA
Sbjct:    61 QESLMQVNGKLEEKEKALQNAESEVAALNRRIQLLEEDLERSEERLATATAKLSEASQAA 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE+ R  KVLENRS  DEERMD L NQLKEAR LAE+AD K DEV+RKLA VE +LE AE
Sbjct:   121 DESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             +R +SG++KI+ELEEEL+VVGN+LKSLEVSEEKANQR EEYK QIK L  +LK       
Sbjct:   181 ERAESGESKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
                ++V+KLQKEVDRLEDEL   K++YK + D++D+ F EL
Sbjct:   241 FAERSVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 281

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0003721 Tm1 "Tropomyosin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 154/281 (54%), Positives = 195/281 (69%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVD-------LDTTKKNLDQA 53
             MDAIKKKMQAMK++KD A+++A  CE +A+DAN RA+K E +       + T +  LDQ 
Sbjct:     1 MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEARQLQKKIQTVENELDQT 60

Query:    54 VKDLXXXXX-------XXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
              + L                        NR++Q++EEDLE+SEER G+ATAKL+EASQAA
Sbjct:    61 QEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLERSEERLGSATAKLSEASQAA 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE+ R  K+LENR+  DEERMD L NQLKEAR LAE+AD K DEV+RKLA VE +LE AE
Sbjct:   121 DESERARKILENRALADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             +R + G+ KI+ELEEEL+VVGN+LKSLEVSEEKANQR EEYK QIK L  +LK       
Sbjct:   181 ERAEQGENKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
                ++V+KLQKEVDRLED+L + K+RY  + D +D  F +L
Sbjct:   241 FAERSVQKLQKEVDRLEDDLIVEKERYCMIGDSLDEAFVDL 281

GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP;TAS

GO:0007315 "pole plasm assembly" evidence=NAS

GO:0048477 "oogenesis" evidence=TAS

GO:0005862 "muscle thin filament tropomyosin" evidence=NAS

GO:0003779 "actin binding" evidence=ISS;TAS

GO:0006936 "muscle contraction" evidence=NAS

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0010591 "regulation of lamellipodium assembly" evidence=IMP

GO:0030017 "sarcomere" evidence=IDA

GO:0070865 "investment cone" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

GO:0031941 "filamentous actin" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

WB|WBGene00002978 lev-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 145/284 (51%), Positives = 198/284 (69%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDL-DTTKK------NLDQA 53
             MDAIKKKMQAMK+EKD+A+D+AD  E + +    + ++VE +L DT KK      +LD+A
Sbjct:     1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQKKMTQTGDDLDKA 60

Query:    54 VKDLXXXXX-------XXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
              +DL                        NR++ ++EE+LE++EER   AT KL EA+   
Sbjct:    61 QEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNV 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE+ R+ KV+ENRS QDEER + +  QLKEA+LLAE+AD K DEV+RKLA VE +LE AE
Sbjct:   121 DESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             +R ++G+ KI+ELEEEL+VVGN+LKSLEVSEEKA QR + Y+ QI+ ++ +LK       
Sbjct:   181 ERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
                ++V+KLQKEVDRLEDEL   K+RYK++++E+DSTF EL+GY
Sbjct:   241 FAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQELSGY 284

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IDA

GO:0043393 "regulation of protein binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030835 "negative regulation of actin filament depolymerization" evidence=IDA

UNIPROTKB|Q22866 lev-11 "Tropomyosin isoforms a/b/d/f" [Caenorhabditis elegans (taxid:6239)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 145/284 (51%), Positives = 198/284 (69%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDL-DTTKK------NLDQA 53
             MDAIKKKMQAMK+EKD+A+D+AD  E + +    + ++VE +L DT KK      +LD+A
Sbjct:     1 MDAIKKKMQAMKIEKDNALDRADAAEEKVRQITEKLERVEEELRDTQKKMTQTGDDLDKA 60

Query:    54 VKDLXXXXX-------XXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
              +DL                        NR++ ++EE+LE++EER   AT KL EA+   
Sbjct:    61 QEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNV 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE+ R+ KV+ENRS QDEER + +  QLKEA+LLAE+AD K DEV+RKLA VE +LE AE
Sbjct:   121 DESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             +R ++G+ KI+ELEEEL+VVGN+LKSLEVSEEKA QR + Y+ QI+ ++ +LK       
Sbjct:   181 ERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
                ++V+KLQKEVDRLEDEL   K+RYK++++E+DSTF EL+GY
Sbjct:   241 FAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQELSGY 284

GO:0009790 "embryo development" evidence=IMP

GO:0034609 "spicule insertion" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0040011 "locomotion" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0051015 "actin filament binding" evidence=IDA

UNIPROTKB|Q27249 lev-11 "Tropomyosin isoforms c/e" [Caenorhabditis elegans (taxid:6239)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 117/260 (45%), Positives = 173/260 (66%)

Query:    12 KMEKDSAMDKA--DTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLXXXXXXXXXXXX 69
             K+ K+ A   +  D  + + + A   A+  + + D  K+ L++  K              
Sbjct:     3 KVNKEGAQQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKK-------REDAEA 55

Query:    70 XXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQ 129
                  NR++ ++EEDLE++E+R  TAT+KL +A++AADEA+R  K +E RSQQDEER + 
Sbjct:    56 EVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANF 115

Query:   130 LTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNS 189
             L  Q+ EA+++AEDAD K +EV+RKLA VE +LE AE+R ++G+ KI+ELEEEL+VVGN+
Sbjct:   116 LETQVDEAKVIAEDADRKYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNN 175

Query:   190 LKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXXXXXKTVKKLQKEVDRLEDELGLN 249
             LKSLEVSEEKA QR + Y+ QI+ ++ +LK          ++V+KLQKEVDRLEDEL L 
Sbjct:   176 LKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLE 235

Query:   250 KDRYKSLADEMDSTFAELAG 269
             K+R ++L +E++ T  E+ G
Sbjct:   236 KERVRNLTEEIEQTVQEIQG 255

GO:0007015 "actin filament organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0034609 "spicule insertion" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0051015 "actin filament binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5KR49 TPM1 "Tropomyosin alpha-1 chain" [Bos taurus (taxid:9913)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 116/281 (41%), Positives = 178/281 (63%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL---------- 50
             MDAIKKKMQ +K++K++A+D+A+  E   K A  R+ ++E +L + +K L          
Sbjct:     1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query:    51 DQAVKD----LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
              +A+KD    L                 NR++Q++EE+L++++ER  TA  KL EA +AA
Sbjct:    61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE+ R  KV+E+R+Q+DEE+M+    QLKEA+ +AEDAD K +EV+RKL  +E +LE AE
Sbjct:   121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             +R +  + K  ELEEELK V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK       
Sbjct:   181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
                ++V KL+K +D LEDEL   K +YK++++E+D    ++
Sbjct:   241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F2Z5B6 TPM1 "Tropomyosin alpha-1 chain" [Sus scrofa (taxid:9823)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 116/281 (41%), Positives = 178/281 (63%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL---------- 50
             MDAIKKKMQ +K++K++A+D+A+  E   K A  R+ ++E +L + +K L          
Sbjct:     1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query:    51 DQAVKD----LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
              +A+KD    L                 NR++Q++EE+L++++ER  TA  KL EA +AA
Sbjct:    61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE+ R  KV+E+R+Q+DEE+M+    QLKEA+ +AEDAD K +EV+RKL  +E +LE AE
Sbjct:   121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             +R +  + K  ELEEELK V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK       
Sbjct:   181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
                ++V KL+K +D LEDEL   K +YK++++E+D    ++
Sbjct:   241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

GO:0045214 "sarcomere organization" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0032059 "bleb" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

MGI|MGI:98809 Tpm1 "tropomyosin 1, alpha" [Mus musculus (taxid:10090)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 116/281 (41%), Positives = 178/281 (63%)

Query:     1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL---------- 50
             MDAIKKKMQ +K++K++A+D+A+  E   K A  R+ ++E +L + +K L          
Sbjct:     1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60

Query:    51 DQAVKD----LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
              +A+KD    L                 NR++Q++EE+L++++ER  TA  KL EA +AA
Sbjct:    61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120

Query:   107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
             DE+ R  KV+E+R+Q+DEE+M+    QLKEA+ +AEDAD K +EV+RKL  +E +LE AE
Sbjct:   121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query:   167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
             +R +  + K  ELEEELK V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK       
Sbjct:   181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query:   227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
                ++V KL+K +D LEDEL   K +YK++++E+D    ++
Sbjct:   241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001725 "stress fiber" evidence=ISO

GO:0003065 "positive regulation of heart rate by epinephrine" evidence=IMP

GO:0003779 "actin binding" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005862 "muscle thin filament tropomyosin" evidence=TAS

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0009790 "embryo development" evidence=IMP

GO:0030016 "myofibril" evidence=IDA

GO:0031941 "filamentous actin" evidence=IDA

GO:0032059 "bleb" evidence=ISO

GO:0032587 "ruffle membrane" evidence=ISO

GO:0032781 "positive regulation of ATPase activity" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051693 "actin filament capping" evidence=ISO

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=ISO;IMP

GO:0060048 "cardiac muscle contraction" evidence=ISO;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O44119	TPM_HOMAM	No assigned EC number	0.6760	1.0	0.9507	N/A	N/A
O01673	TPM_ACAVI	No assigned EC number	0.5422	1.0	0.9507	N/A	N/A
Q9UB83	TPM_PERAM	No assigned EC number	0.6549	1.0	0.9507	N/A	N/A
Q1HPU0	TPM1_BOMMO	No assigned EC number	0.8239	1.0	0.9507	N/A	N/A
Q9N2R3	TPM_CHAFE	No assigned EC number	0.6884	0.9111	0.9318	N/A	N/A
Q1HPQ0	TPM2_BOMMO	No assigned EC number	0.6725	0.9888	0.9368	N/A	N/A
Q5KR49	TPM1_BOVIN	No assigned EC number	0.4664	0.9962	0.9471	yes	N/A
O61379	TPM_PANST	No assigned EC number	0.6532	0.9629	0.9489	N/A	N/A
Q25632	TPM_ONCVO	No assigned EC number	0.5598	1.0	0.9507	N/A	N/A
Q8WR63	TPM_TRIPS	No assigned EC number	0.6056	1.0	0.9507	N/A	N/A
O97192	TPM_HELAS	No assigned EC number	0.5578	0.9962	0.9471	N/A	N/A
Q9NAS5	TPM_ANISI	No assigned EC number	0.5669	1.0	0.9507	N/A	N/A
P58771	TPM1_MOUSE	No assigned EC number	0.4664	0.9962	0.9471	yes	N/A
P91958	TPM_MYTGA	No assigned EC number	0.5070	1.0	0.9507	N/A	N/A
P58772	TPM1_RABIT	No assigned EC number	0.4664	0.9962	0.9471	yes	N/A
Q22866	TPM1_CAEEL	No assigned EC number	0.5774	1.0	0.9507	yes	N/A
Q9NG56	TPM_BLAGE	No assigned EC number	0.6466	0.9962	0.9471	N/A	N/A
Q8T380	TPM_LEPSA	No assigned EC number	0.7852	1.0	0.9507	N/A	N/A
Q8IT89	TPM_HAELO	No assigned EC number	0.6232	1.0	0.9507	N/A	N/A
O18416	TPM_DERPT	No assigned EC number	0.6232	1.0	0.9507	N/A	N/A
Q25145	TPM_HALRU	No assigned EC number	0.5316	1.0	0.9507	N/A	N/A
Q25456	TPM_METEN	No assigned EC number	0.6532	0.9629	0.9489	N/A	N/A
Q8T6L5	TPM_PERFU	No assigned EC number	0.6501	0.9962	0.9471	N/A	N/A
Q9NFZ4	TPM_LEPDS	No assigned EC number	0.6161	1.0	0.9507	N/A	N/A
P09491	TPM2_DROME	No assigned EC number	0.75	1.0	0.9507	yes	N/A
P15846	TPMM_TRICO	No assigned EC number	0.5739	1.0	0.9507	N/A	N/A
P04692	TPM1_RAT	No assigned EC number	0.4664	0.9962	0.9471	yes	N/A
A2V735	TPM_CHIOP	No assigned EC number	0.6795	1.0	0.9507	N/A	N/A
O02389	TPM_CHLNI	No assigned EC number	0.5035	1.0	0.9507	N/A	N/A
A1KYZ2	TPM_PENMO	No assigned EC number	0.6654	1.0	0.9507	N/A	N/A
O97162	TPM_BOOMI	No assigned EC number	0.6161	1.0	0.9507	N/A	N/A
P86704	TPM_PANBO	No assigned EC number	0.6690	1.0	0.9507	N/A	N/A
Q23939	TPM_DERFA	No assigned EC number	0.6373	1.0	0.9507	N/A	N/A
Q95VA8	TPM_TRISP	No assigned EC number	0.6056	1.0	0.9507	N/A	N/A
P31816	TPM_LOCMI	No assigned EC number	0.6441	0.9888	0.9434	N/A	N/A
P43689	TPM2_BIOGL	No assigned EC number	0.5563	1.0	0.9507	N/A	N/A
P42636	TPM1_BIOGL	No assigned EC number	0.5281	1.0	0.9507	N/A	N/A
P42639	TPM1_PIG	No assigned EC number	0.4664	0.9962	0.9471	yes	N/A
Q9GZ71	TPM_HALDV	No assigned EC number	0.5316	1.0	0.9507	N/A	N/A
Q25457	TPM_MYTED	No assigned EC number	0.5035	1.0	0.9507	N/A	N/A
O96764	TPM_CHIKI	No assigned EC number	0.6405	0.9888	0.9368	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	270
pfam00261	237	pfam00261, Tropomyosin, Tropomyosin	8e-70
pfam12718	143	pfam12718, Tropomyosin_1, Tropomyosin like	2e-16
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-14
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	1e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	6e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.003
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.003
pfam00261	237	pfam00261, Tropomyosin, Tropomyosin	0.004

>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin

 Score =  214 bits (548), Expect = 8e-70
 Identities = 138/232 (59%), Positives = 187/232 (80%)

Query: 39  VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAK 98
           +E +LD  ++ L++A + LEE EK    AE+EVA+LNR++Q++EEDLE+SEER  TA  K
Sbjct: 6   LEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATALEK 65

Query: 99  LAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFV 158
           L EA +AADE+ R  KVLENRS +D+E+M+QL  QLKEA+ +AE+AD K +EV+RKL  V
Sbjct: 66  LEEAEKAADESERGRKVLENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARKLVVV 125

Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
           E +LE AE+R ++ ++KI+ELEEELKVVGN+LKSLEVSEEKA+QR + Y+ +I+ L  KL
Sbjct: 126 EGDLERAEERAEAAESKIVELEEELKVVGNNLKSLEVSEEKASQREDSYEEKIRDLTEKL 185

Query: 219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
           KEAE RAEFAE++V+KL+KEVDRLEDEL   K++YK++++E+D T AEL GY
Sbjct: 186 KEAETRAEFAERSVQKLEKEVDRLEDELLAEKEKYKAISEELDQTLAELTGY 237

Length = 237

>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 45/142 (31%), Positives = 81/142 (57%), Gaps = 10/142 (7%)

Query: 7   KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAA 66
           KM A+K+E ++A ++A+  E + K+      + E ++ + +K   Q  +++E+ E+ L  
Sbjct: 1   KMNALKLEAENAQERAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKE 60

Query: 67  A----------ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116
           A           +   AL R++Q++EE+LE+SE+R    T KL EA + A+E+ R  K L
Sbjct: 61  AKEKLEESEKLATNAEALTRRIQLLEEELEESEKRLKETTEKLREADKKAEESERKVKAL 120

Query: 117 ENRSQQDEERMDQLTNQLKEAR 138
           EN   + EE+ ++L  + KEA+
Sbjct: 121 ENERDEWEEKYEELEKKYKEAK 142

This family is a set of eukaryotic tropomyosins. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2p spans four actin monomers along a filament, whereas Tpmlp spans five. Despite its shorter length, Tpm2p can compete with Tpm1p for binding to F-actin. Over-expression of Tpm2p in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1p. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis. The family also contains higher eukaryote Tmp3 members. Length = 143

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 62/218 (28%), Positives = 116/218 (53%)

Query: 33  NLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92
            L+A+  E++L      L++  ++LEE ++ L  AE E+  L  ++Q +EE LE+     
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276

Query: 93  GTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152
                ++ E  +           LE + Q   ER+  L  QL+E     E+ ++K DE++
Sbjct: 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336

Query: 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIK 212
            +LA +E++LE  ++ ++S +A++ ELE EL+ + + L+ LE   E    +V + + QI 
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

Query: 213 QLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNK 250
            L  +++  EAR E  E   ++LQ+E++ L  +L   +
Sbjct: 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 63/244 (25%), Positives = 125/244 (51%)

Query: 25  CEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84
            E + K        +E  L+  ++ L++  + LEE ++ LAA E E+  L  +++ +EE+
Sbjct: 686 LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745

Query: 85  LEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDA 144
           LE+ EE       +L E  +  +        L+   ++ EE+   L  +L+E     E+A
Sbjct: 746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEA 805

Query: 145 DAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRV 204
           + + D + R+L  +E   E  E  ++  + +I ELEE+L  +   L+ LE   E+  + +
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865

Query: 205 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTF 264
           EE + + ++L  +LKE E   E  E+ +++L+ E+  L++E+   ++R + L  +++   
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925

Query: 265 AELA 268
            EL 
Sbjct: 926 VELP 929

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 54/245 (22%), Positives = 130/245 (53%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
           + +++  ++ ++ + +    + +  + +        ++++  L+  ++ L++  ++LEE 
Sbjct: 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEEL 756

Query: 61  EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
           ++ L   E E+ +L   +  ++E++E+ EE+      +L E  +  +EA R    LE   
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816

Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
           +  E+R ++L  +++E     E+ + K DE+  +L  +E ELE  ++ ++  +A+  ELE
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876

Query: 181 EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
           +ELK +    + LE    +    + E K +I++L  +L+E EA+ E  E  + +L++E++
Sbjct: 877 DELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Query: 241 RLEDE 245
              ++
Sbjct: 937 EEYED 941

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 41/217 (18%), Positives = 106/217 (48%)

Query: 46  TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA 105
            ++ +++  + +EE E+ +A  E  +A L ++++ +EE+LE+  +     + +++   + 
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 106 ADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165
                   + LE R  Q  + + +L  +++E     E+A+ +  E   ++  +E ++E  
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 166 EDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA 225
           ++ +K+    + EL  EL ++     +L    E   +R+   +R+++ L  +++E     
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 226 EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDS 262
           E     +++L++ ++ LE EL    +   SL + +  
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALAL 891

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 54/232 (23%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 37  DKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTAT 96
            ++  +L+  ++ L +  ++LEE ++ L  AE E+  L  +++ + E+LE+ +E      
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 97  AKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
            ++ E            + LEN  ++ EER+++L  +++  +   E+ +   +E+ + LA
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAV 216
            +E+  E  E++     A + ELEE  + +   L  LE    +    +EE KR+I+ L  
Sbjct: 355 ELEEAKEELEEK---LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 217 KLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
           +L+    R E  ++ +K+L+ E++ L+ EL    +  + L ++++     L 
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 54/214 (25%), Positives = 119/214 (55%)

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
           K+ L +  ++L E E  L   E E+ +L  +++ +E+ LE+   +      +L E  +  
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
                  + L++R ++ EE +++L  +L+E +   E+ + + + +   LA +++E+E  E
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
           ++ ++   ++ ELEEEL+     L +LE   E   QR E  +++I++L  +++E E + +
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260
             E+ +++L+KE++ L++EL   +   + L DE+
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDEL 879

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 46/206 (22%), Positives = 111/206 (53%)

Query: 62  KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
           ++  A + E+  L  ++  +E  LEK EE   +   +L       +E  R  + LE + +
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 122 QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEE 181
           + +  +  L  +L++ +   E+ + + +E+  +L  +++ LE  E+ ++S +  + +L+E
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 182 ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR 241
           E++ +    ++L+   E+  + +EE +R++  L  +L+  E R E  E+ +++L++E++ 
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 242 LEDELGLNKDRYKSLADEMDSTFAEL 267
           LE++L   ++  + L  E++    EL
Sbjct: 840 LEEKLDELEEELEELEKELEELKEEL 865

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 50/262 (19%), Positives = 129/262 (49%), Gaps = 5/262 (1%)

Query: 6   KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALA 65
            +++ ++ E +   ++    E + ++      ++E  L+  +  + +  +++EE +K L 
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

Query: 66  AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEE 125
           A  +E++ L ++ Q++ E L   E +     A+L E     DE       LE + ++ +E
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351

Query: 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
            ++ L  +L+E     E+ +++ +E+  +L  +  ++   E ++ S + +I  LE  L+ 
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 186 VGNSLKSL-----EVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
           + +  + L     E+ ++     ++E + ++++L  +L+E +   E  E+ +++L++E++
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 241 RLEDELGLNKDRYKSLADEMDS 262
             E  L   +     L   +DS
Sbjct: 472 EAEQALDAAERELAQLQARLDS 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 57/241 (23%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 28  QAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEK 87
           + K+      ++E  L+  ++ L     +L   E  L     ++  L R+++ ++ +L  
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 88  SEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK 147
            EE      ++L E  +  +E     + L+ R ++ EE ++ L   L + +   E+ + K
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 148 SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEY 207
              +  +L  +E+ELE AE R       +  LE EL+ +    + LE   E+  + +EE 
Sbjct: 788 RQALQEELEELEEELEEAERR-------LDALERELESLEQRRERLEQEIEELEEEIEEL 840

Query: 208 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
           + ++ +L  +L+E E   E  ++ +++L+ E + LEDEL   ++  + L +E+    +EL
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900

Query: 268 A 268
           A
Sbjct: 901 A 901

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 45/269 (16%), Positives = 124/269 (46%), Gaps = 23/269 (8%)

Query: 2   DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
            +++ +++ ++   D    +      +  +     +++E + +  K+ L++  +DL   E
Sbjct: 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750

Query: 62  KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
           + +   +SE+  L  +++ +EEDL K EE      A+L+                     
Sbjct: 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH-------------------- 790

Query: 122 QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEE 181
               R+ ++  +L +        +A+  E+ +KL  +  E E  E  ++    + ++L+E
Sbjct: 791 ---SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 182 ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR 241
           ++K +   +++L   +E+  + +EE +  ++ L  +L + +   +  E  +++L+++++ 
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907

Query: 242 LEDELGLNKDRYKSLADEMDSTFAELAGY 270
           LE ++   + R   L  ++++   EL+  
Sbjct: 908 LEAQIEKKRKRLSELKAKLEALEEELSEI 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 44/247 (17%), Positives = 107/247 (43%), Gaps = 14/247 (5%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
              +K+K+  ++ E  S        E + +DA  R  K+E ++D     +++  +++EE 
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348

Query: 61  EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
            K       E A L  +++ +  +LE+ ++       +L +  +  ++  R    L+   
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408

Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
            + +E + +L+ +L +        +AK +E+              E+  +    +I + E
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINEL--------------EEEKEDKALEIKKQE 454

Query: 181 EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
            +L+ +   L   E       +  +  ++++ +L  +L EAEA+A  +E+ V+  +   +
Sbjct: 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514

Query: 241 RLEDELG 247
            L+  + 
Sbjct: 515 VLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 54/260 (20%), Positives = 125/260 (48%), Gaps = 10/260 (3%)

Query: 3   AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREK 62
            ++++++ ++ E + A  + +  + + ++     ++++ +L   K+ +++   ++    +
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309

Query: 63  ALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQ 122
            L   E+E+  L  +++ ++E +E  +E        L E  Q   E     + LE +   
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369

Query: 123 DEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEE 182
             E +++L   L+E      + +A+  E+  +L  ++ E+E  E+R++        L E 
Sbjct: 370 LLEELEELFEALREE---LAELEAELAEIRNELEELKREIESLEERLE-------RLSER 419

Query: 183 LKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 242
           L+ +   LK LE   E+    +EE   ++++L  +L+E   R +  E+ + +LQ+E+ RL
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479

Query: 243 EDELGLNKDRYKSLADEMDS 262
           E EL   + R   L  E  +
Sbjct: 480 EKELSSLEARLDRLEAEQRA 499

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 50/255 (19%), Positives = 111/255 (43%), Gaps = 28/255 (10%)

Query: 26  EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85
           E +  +      ++  +L+  ++ L+Q  K+LEE  + ++A   ++A L  +V+ +EE +
Sbjct: 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749

Query: 86  EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK---------- 135
            +  +      A++ E  +  +EA       E   ++ E +++QL  +LK          
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809

Query: 136 -EARLLAEDADAKS-----------------DEVSRKLAFVEDELEVAEDRVKSGDAKIM 177
            E  LL E+A                     +++  ++  + +++E     ++  +  I 
Sbjct: 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

Query: 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237
           ELE EL+ + N   SLE +       +EE   ++++L  K  E     E   + + +L+ 
Sbjct: 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

Query: 238 EVDRLEDELGLNKDR 252
            ++ LE  +   ++R
Sbjct: 930 RLEGLEVRIDNLQER 944

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 16/234 (6%)

Query: 42  DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
            L+  K+ L     +L   E  L     E++  +RK+  IE+++E+ E+       +L E
Sbjct: 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741

Query: 102 A-------SQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRK 154
                    Q  +      K LE R ++ EE + +L  +     L A  + ++  E+  +
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL--EEALNDLEARLSHSRIPEIQAE 799

Query: 155 LAFVEDELEVAEDRVKSGDAKIME-------LEEELKVVGNSLKSLEVSEEKANQRVEEY 207
           L+ +E+E+   E R++  + K+         LE+E++ +      L+   +   + +E  
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859

Query: 208 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
             + ++L  +L+E EA     E  +  L+KE D LE +L   + + + L  +++
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 43  LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102
           LD  +  L     +L   +    AAE+E  A   ++Q   ++ E   +    A   LA+A
Sbjct: 76  LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135

Query: 103 --------SQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRK 154
                    QA D   R+  + E R +Q E +   L    K+ +  A    ++  ++  +
Sbjct: 136 QQELARLTKQAQDLQTRLKTLAEQR-RQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194

Query: 155 LAFVEDELEVAEDR---VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQI 211
            A +E E +    R    ++   ++       +    +++  +    +  Q++     QI
Sbjct: 195 SAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQI 254

Query: 212 KQLAVKLKEAEARAEFAEKTVKKLQK 237
           ++   +L+  E      E+ V +L+ 
Sbjct: 255 RERERQLQRLETAQARLEQEVAQLEA 280

Length = 499

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 50/274 (18%), Positives = 130/274 (47%), Gaps = 12/274 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
           ++ ++++++  + E +    +    E + ++  L   ++E +++  +K L     ++   
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300

Query: 61  EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
           E+        +A L R+++ +E  LE+ E +      +LAE  +  +E     + LE   
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360

Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
           ++ E  +++L ++L+E     E   +K  ++  ++A + +E+E  E R++  + +   L+
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420

Query: 181 EELKVVGNSLKSLEVSE------------EKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228
           +E++ +   L+  E+ E            E+  + +E  +  +++L  +L+EAE   + A
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480

Query: 229 EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDS 262
           E+ + +LQ  +D LE      +   + +   + +
Sbjct: 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 52/240 (21%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 38  KVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG---- 93
           + E  L+ T++NL++    LEE EK L   E +     R  Q ++ +L + E        
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQELKAELRELELALLLAKL 234

Query: 94  -TATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152
                +L E  +         + L+   ++ E+ +++L ++L+E R   E+   +  E+ 
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIK 212
            ++  +E E+ +  +R++  + ++ ELEE L+ +   +++L+   E+    +EE ++ + 
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 213 QLAVKLKEAEARAEFA----EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
           +L    +E E +        E+  + L++E+  LE EL   ++  + L  E++S    L 
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 44/239 (18%), Positives = 107/239 (44%), Gaps = 8/239 (3%)

Query: 38  KVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQ-MIEEDLEKSEERSGTAT 96
            +E  L + ++ L++  +++ E EK L   E  +  LN+K++ + EE+  + +E+ G   
Sbjct: 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE 300

Query: 97  AKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
           A++A   ++  E  R  +  E R  + E  +D+L  +++E     E+   + D+++ + A
Sbjct: 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA 360

Query: 157 FVEDELEVAEDRVKSGDA-------KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKR 209
            +++ELE     ++  D        ++ +  E+L+ +   +  L+   ++  + ++    
Sbjct: 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420

Query: 210 QIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
           ++  L   +   EA+    E+  +    E+ + E +L            E+     E  
Sbjct: 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 56/257 (21%), Positives = 114/257 (44%), Gaps = 11/257 (4%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
           +    +K+  ++ E +    + +  + + ++       +E +++  K  L +    +EE 
Sbjct: 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770

Query: 61  EKALAAAESEVAALNR-----KVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKV 115
           E+ L   E  +  L       ++  I+ +L K EE      A+L E  Q  +      + 
Sbjct: 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830

Query: 116 LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175
           LE   Q+ +E+   L  Q+K      E+ + K +E+  +L  +E  L   E R+     +
Sbjct: 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890

Query: 176 IMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEF------AE 229
             ELE +L+ +   ++ LE   EK  +R+ E K +++ L  +L E E            E
Sbjct: 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950

Query: 230 KTVKKLQKEVDRLEDEL 246
            +++ +Q E+ R+E+E+
Sbjct: 951 LSLEDVQAELQRVEEEI 967

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 31/247 (12%)

Query: 29  AKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS 88
                  A      L +   +  ++VK LE R   L     EV  L  ++    + LE+ 
Sbjct: 48  KLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFIL---PEEVEKLEAEL----KSLEEV 100

Query: 89  EERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS 148
            + +   ++++ E +          + LE R  + +E ++ L + L+E   LA      S
Sbjct: 101 IKPAEKFSSEVEELT----------RKLEERLSELDEELEDLEDLLEELEPLAYLDFDLS 150

Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEE----LKVVGNSLKSLEVSEEKANQRV 204
                K   V     +   R +  +A +  +E+E     + V  S+  +     +   +V
Sbjct: 151 LLRGLKFLLVR----LGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKV 206

Query: 205 EEYKRQ-----IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADE 259
            +   +      +        +E  +E  E+ + ++Q E++ L  EL    ++       
Sbjct: 207 SKILNELGFELYEVPEFDGGPSELISE-LEEVIAEIQDELESLRSELEALAEKIAEELLA 265

Query: 260 MDSTFAE 266
           +      
Sbjct: 266 VREILEI 272

Length = 660

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 35/171 (20%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 97  AKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
            ++ E  +  +E       LE    +  + +++L  +L++ R   E+   +   + + LA
Sbjct: 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736

Query: 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAV 216
            +E E+E  E+R+     ++ ELE E       ++ LE   E+A + + E + +I++L  
Sbjct: 737 RLEAEVEQLEERIAQLSKELTELEAE-------IEELEERLEEAEEELAEAEAEIEELEA 789

Query: 217 KLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
           ++++ +   +   + + +L+ E+  L +E    ++R +SL   + +T   L
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 44/264 (16%), Positives = 122/264 (46%), Gaps = 26/264 (9%)

Query: 1    MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
            +  +K++++ ++ ++ +  ++ +  E + ++A  R D +E +L++ ++  ++  +++EE 
Sbjct: 774  LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833

Query: 61   EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
            E+ +   E ++  L  +++ +E++LE+ +E      A+  E                   
Sbjct: 834  EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL------------------ 875

Query: 121  QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
               E+ + +L  + +E      + +++  E+  ++  + + LE  E +++  + ++ ELE
Sbjct: 876  ---EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELE 932

Query: 181  EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
            EEL+         +  E +  + +E  + +I+ L      A    E  E+  ++L+ + +
Sbjct: 933  EELEEEY-----EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE 987

Query: 241  RLEDELGLNKDRYKSLADEMDSTF 264
             LE+      +  + L  E    F
Sbjct: 988  DLEEAKEKLLEVIEELDKEKRERF 1011

Length = 1163

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 30/206 (14%), Positives = 89/206 (43%), Gaps = 9/206 (4%)

Query: 74  LNRKVQMIEEDLEKSEERSGTATAKLAEA-SQAADEANRMCKVLENRSQQDEE---RMDQ 129
           + ++++   +++E+  +++G   A+      +  +EA  +   +E  + +       ++ 
Sbjct: 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED 252

Query: 130 LTNQLKEARLLAEDADAKSDEVSRKLAFVED--ELEVAEDRVKSGDAKIMELEEELKVVG 187
            +  L +    A    +K ++  + +   E          ++  G  +I +++++LK + 
Sbjct: 253 PSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQ 312

Query: 188 NSLKSLEVSEEKANQRVEEYKRQ---IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
           +SL+ L+ + ++  + ++E+  Q   + +L  K+   +          KK++  ++ L+ 
Sbjct: 313 HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372

Query: 245 ELGLNKDRYKSLADEMDSTFAELAGY 270
           E   N +    L DE+D      +  
Sbjct: 373 EFVDNAEELAKLQDELDKIVKTKSEL 398

Length = 562

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 37/219 (16%), Positives = 83/219 (37%), Gaps = 30/219 (13%)

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE------EDLEKSEERSGTATAKLA 100
           ++ L++  K+++E E+ ++  E+E+  L ++++ +E       DL          +  + 
Sbjct: 92  EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSL-LLGFKYVSVFVG 150

Query: 101 EASQAADEANRMCKVLENRSQQDEERMDQLTNQLKE-ARLLAEDADAKSDEVSRKLAFVE 159
              +           LE    + +    +  +  K    ++       SDEV  +L  + 
Sbjct: 151 TVPED---------KLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLG 201

Query: 160 ------DELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQ 213
                 +E     + ++    ++ E+E+E + +   LK L     +    + EY     +
Sbjct: 202 FERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261

Query: 214 LA-VKLKEAEARAEFA------EKTVKKLQKEVDRLEDE 245
            A    K  +    FA      E  VKKL++ +D+    
Sbjct: 262 RAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATGG 300

Length = 646

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 42/213 (19%), Positives = 99/213 (46%), Gaps = 10/213 (4%)

Query: 55  KDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCK 114
           +  EE E+ L   E  +  L   ++ +E+ LEK E           +A +A        +
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLER----------QAEKAERYQELKAE 221

Query: 115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDA 174
           + E        ++ +L  +L+E        + + +E+  +L   E E+E  +  ++    
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281

Query: 175 KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKK 234
           ++ EL+EEL  +   ++ LE       +R+EE + ++++L  +L+E + + E  ++ +++
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341

Query: 235 LQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
            +  ++ LE  L   ++  + L +++ +   EL
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 57/233 (24%), Positives = 113/233 (48%), Gaps = 8/233 (3%)

Query: 5    KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
            ++K +A + +K     KAD  + +A++A  +AD+ +   +  KK  D A K  EE +KA 
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345

Query: 65   AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE 124
             AA++E  A   + +  EE  E +E++   A  K   A + A+E  +     + ++++D+
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDK 1404

Query: 125  ERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELK 184
            ++ D+L      A+  A++A  K++E  +      DE +   +  K  D    + EE  K
Sbjct: 1405 KKADELKKA-AAAKKKADEAKKKAEEKKKA-----DEAKKKAEEAKKADEAKKKAEEAKK 1458

Query: 185  VVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237
                  K+ E  +    ++  E  ++  +   K +EA+ +A+ A+K  +  +K
Sbjct: 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 53/245 (21%), Positives = 123/245 (50%), Gaps = 23/245 (9%)

Query: 4   IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA 63
           ++ +++ ++ E +   ++ +  + + ++     + +E  L   K+ +++  +  +  ++ 
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794

Query: 64  LAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQD 123
           L   E E+    R++  +E +LE  E+R      ++ E  +  +E       LE      
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE------ 848

Query: 124 EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEEL 183
            E +++L  +L+E +   E+ +A+ +E+  +L  +E+E E              ELEEEL
Sbjct: 849 -EELEELEKELEELKEELEELEAEKEELEDELKELEEEKE--------------ELEEEL 893

Query: 184 KVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA--EFAEKTVKKLQKEVDR 241
           + + + L  L+   EK  +R+EE + ++++L V+L E E     E+ +    +L++E++R
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953

Query: 242 LEDEL 246
           LE+E+
Sbjct: 954 LEEEI 958

Length = 1163

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 60  REKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENR 119
           ++ AL    S++A L   + +  +  +  ++      A L+ A         +   L   
Sbjct: 51  KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGA 110

Query: 120 SQQDEERMDQLTNQLKEARLLAEDADAKSD-------EVSRKLAFVEDELEVAEDRVKSG 172
               E R  +L  +L   + ++  A A+ +        + R+LA +E  L+ +E R +  
Sbjct: 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRES 170

Query: 173 DAKIMELEEELKV 185
            AKI +L   L V
Sbjct: 171 QAKIADLGRRLNV 183

Length = 343

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 124 EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVE---------DELEVAEDRVKSGDA 174
           +  ++ L   L++     E    K  + S  +             D ++   + ++  + 
Sbjct: 326 KALLEALEEILEKNLQKLE---EKLKDPSTSIELESITDLIESINDIIDAINELIREHNE 382

Query: 175 KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKK 234
           KI  L++E       L    V+E K +  ++ Y+++ K L   +   E   +  E  +K 
Sbjct: 383 KIDNLKKEKNKAKKKLWLHLVAELKED--IDAYQKEKKGLEKAINSLEKEIKQLEAEIKA 440

Query: 235 LQKEVDRLEDEL 246
           L+KE+  LE +L
Sbjct: 441 LEKEIKELEKQL 452

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 7/230 (3%)

Query: 14  EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAA 73
           E D  +++ +    QA++    AD+V  + +  ++ L+    ++E+  + +A  E E   
Sbjct: 217 ELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREE 276

Query: 74  LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQ---- 129
           L  +V+ + E LE+ EE      A+       A+      + LE+R ++  +R+++    
Sbjct: 277 LAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336

Query: 130 ---LTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVV 186
                 + +  R  A+D + +++E+  + A +E ELE A + V+    +I ELEEE++ +
Sbjct: 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396

Query: 187 GNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236
                   V    A   +EE + +  +L  +  E EA    A + V++ +
Sbjct: 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 58/284 (20%), Positives = 121/284 (42%), Gaps = 27/284 (9%)

Query: 2   DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
           +A++ + + ++   +   D+ + C   A+  N  A+ +  D D  ++  ++  ++  E E
Sbjct: 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369

Query: 62  KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
             L  A   V     +++ +EE++E+  ER G A   L  A    +E       L  R  
Sbjct: 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429

Query: 122 QDEERMDQLTNQLKEARLL---------------------AEDADAKSDEVSRKLAFVED 160
           + E  +     +++EA  L                      E+   + +E+  +L  +E+
Sbjct: 430 ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEE 489

Query: 161 ELEVAEDRV------KSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL 214
           E+E  E+R+         + +I  LEE  + +   +     + E+  +R EE + +  +L
Sbjct: 490 EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549

Query: 215 AVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLAD 258
             + +E    A  AE+  ++ ++EV  L  +L   K+R +SL  
Sbjct: 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER 593

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 36  ADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTA 95
           A+ VE   +  +   ++    LEE   A  A   E  +L      +EE  E+  E +   
Sbjct: 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368

Query: 96  TAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKL 155
            ++L EA +A ++     + LE   ++  ER       L  A    E+   + DE+  + 
Sbjct: 369 ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428

Query: 156 AFVEDELEVAEDRVKSGDAKIMELEEELKV--VGNSLKSLEVSE--EKANQRVEEYKRQI 211
           A +E  L  A +RV+  +     L E  K    G  ++     E  E+  +RVEE + ++
Sbjct: 429 AELEATLRTARERVEEAE----ALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAEL 484

Query: 212 KQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
           + L  +++E E R E AE  + + +  ++RLE+
Sbjct: 485 EDLEEEVEEVEERLERAED-LVEAEDRIERLEE 516

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 47/238 (19%), Positives = 112/238 (47%), Gaps = 5/238 (2%)

Query: 29  AKDANLRADKVEVDLDTTKKNLDQAVKDLEERE--KALAAAESEVAALNRKVQMIEEDLE 86
           A DA L  ++V  D   +   L   +++ EE++  + L   ESE+A L+ +++  EE  E
Sbjct: 171 ASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQRE 230

Query: 87  KSEERSGTATAKLAEASQAADEANRM---CKVLENRSQQDEERMDQLTNQLKEARLLAED 143
           ++ E    A   L E  +  +E   +    + L     + E   ++L  ++++ R   E+
Sbjct: 231 QARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290

Query: 144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQR 203
            + + D++  +    + + E  E R +  + +  EL + L+    + ++     E   + 
Sbjct: 291 LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRED 350

Query: 204 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
            ++ + + ++L  +  E E+  E A + V+  ++E++ LE+E+   ++R+     ++ 
Sbjct: 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408

Length = 880

>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 36/147 (24%), Positives = 80/147 (54%)

Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
           K LE    + EER+++   +L+EA   AE A+A+   ++R++  +E++LE +E+R+ +  
Sbjct: 4   KQLEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATAL 63

Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
            K+ E E+         K LE    K ++++E+ + Q+K+     +EA+ + E   + + 
Sbjct: 64  EKLEEAEKAADESERGRKVLENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARKLV 123

Query: 234 KLQKEVDRLEDELGLNKDRYKSLADEM 260
            ++ +++R E+     + +   L +E+
Sbjct: 124 VVEGDLERAEERAEAAESKIVELEEEL 150

Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	99.93
KOG1003|consensus	205		99.88
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.51
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	99.48
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.34
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.33
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.3
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	99.29
KOG1003|consensus	205		99.25
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.22
KOG0161|consensus	1930		98.94
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.94
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.91
KOG0161|consensus	1930		98.91
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.81
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.79
KOG0250|consensus	1074		98.68
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.6
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.58
KOG0996|consensus	1293		98.53
KOG0977|consensus	546		98.53
PRK03918	880	chromosome segregation protein; Provisional	98.37
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.37
KOG0971|consensus	1243		98.36
KOG0971|consensus	1243		98.36
PRK03918	880	chromosome segregation protein; Provisional	98.36
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.34
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.33
KOG0994|consensus	1758		98.29
KOG0996|consensus	1293		98.28
PHA02562	562	46 endonuclease subunit; Provisional	98.27
PRK11637	428	AmiB activator; Provisional	98.27
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.26
KOG0964|consensus	1200		98.26
KOG0250|consensus	1074		98.24
KOG0933|consensus	1174		98.23
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.13
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.08
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.05
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.03
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.99
PRK04778	569	septation ring formation regulator EzrA; Provision	97.98
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.98
KOG4674|consensus	1822		97.93
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.9
PRK11637	428	AmiB activator; Provisional	97.9
KOG0964|consensus	1200		97.9
KOG0994|consensus	1758		97.89
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.86
KOG0977|consensus	546		97.83
PRK09039	343	hypothetical protein; Validated	97.83
KOG0933|consensus	1174		97.74
PRK04778	569	septation ring formation regulator EzrA; Provision	97.68
COG4372	499	Uncharacterized protein conserved in bacteria with	97.68
KOG4643|consensus	1195		97.63
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.62
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.52
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.43
KOG0018|consensus	1141		97.41
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.41
KOG4674|consensus	1822		97.36
PRK04863	1486	mukB cell division protein MukB; Provisional	97.36
COG4372	499	Uncharacterized protein conserved in bacteria with	97.32
KOG0018|consensus	1141		97.31
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.24
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.22
PRK11281	1113	hypothetical protein; Provisional	97.09
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.09
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.04
KOG0980|consensus	980		97.01
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	97.0
KOG4673|consensus	961		96.94
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.94
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.94
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.92
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.9
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.82
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.77
KOG4643|consensus	1195		96.76
KOG0976|consensus	1265		96.76
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.72
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.66
KOG4673|consensus	961		96.65
KOG0612|consensus	1317		96.63
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	96.61
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.59
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.54
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.46
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	96.41
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	96.35
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.28
KOG0999|consensus	772		96.28
KOG0976|consensus	1265		96.24
KOG0946|consensus	970		96.13
PRK11281	1113	hypothetical protein; Provisional	96.08
KOG0980|consensus	980		96.01
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.97
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.83
KOG0249|consensus	916		95.69
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.57
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	95.54
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.44
KOG0946|consensus	970		95.43
KOG0612|consensus	1317		95.35
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.26
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.24
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.16
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.05
KOG0995|consensus	581		94.9
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.89
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	94.82
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.81
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.75
KOG0963|consensus	629		94.73
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.62
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.47
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	94.45
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.38
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.22
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	93.96
KOG0963|consensus	629		93.9
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	93.84
PRK10869	553	recombination and repair protein; Provisional	93.76
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.71
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.63
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	93.57
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	93.54
KOG0999|consensus	772		93.47
KOG1853|consensus	333		93.45
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.33
KOG0978|consensus	698		93.08
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.98
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	92.96
KOG0978|consensus	698		92.74
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.7
KOG0804|consensus	493		92.69
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.67
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.64
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.43
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.38
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.28
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.1
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	92.02
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.97
KOG0979|consensus	1072		91.87
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	91.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.4
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	91.39
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.99
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.8
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	90.8
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.59
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.38
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	90.14
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.07
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	89.99
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	89.95
PRK10246	1047	exonuclease subunit SbcC; Provisional	89.82
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	89.77
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	89.66
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.61
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.53
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.23
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.16
PF15456	124	Uds1: Up-regulated During Septation	89.15
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	88.96
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	88.72
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	88.6
COG2433	652	Uncharacterized conserved protein [Function unknow	88.37
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	88.23
COG2433	652	Uncharacterized conserved protein [Function unknow	88.0
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	87.93
KOG0979|consensus	1072		87.77
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	87.4
COG5185	622	HEC1 Protein involved in chromosome segregation, i	87.39
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	86.83
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	86.66
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	86.56
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.46
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	86.0
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	85.77
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	85.43
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	85.11
PRK10698	222	phage shock protein PspA; Provisional	85.09
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	84.81
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	84.41
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	84.36
KOG4360|consensus	596		84.3
COG4477	570	EzrA Negative regulator of septation ring formatio	83.08
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.01
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	81.61
TIGR02231	525	conserved hypothetical protein. This family consis	80.8
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	80.21
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	80.15
COG4477	570	EzrA Negative regulator of septation ring formatio	80.09

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=99.93  E-value=5.2e-23  Score=168.41  Aligned_cols=232  Identities=54%  Similarity=0.771  Sum_probs=218.3

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy1411          39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN  118 (270)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~  118 (270)
                      +..+++.+...+..+...+.........++.++.++.+|+..++..++.+..++..+..++..++...++..+.++.+++
T Consensus         6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~   85 (237)
T PF00261_consen    6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN   85 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444445555556666677778889999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHH
Q psy1411         119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE  198 (270)
Q Consensus       119 ~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~  198 (270)
                      +.....+.+..++.++..+...+.++..+|+++.+++.+++..|.+++.|+..++.++..|+.++..+.+.|++++...+
T Consensus        86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~  165 (237)
T PF00261_consen   86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE  165 (237)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         199 KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      .+..+.+.|...|..+...+..+..+++.++..+..|...+..++..+.....++..+..+||+++++||+|
T Consensus       166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~~  237 (237)
T PF00261_consen  166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNEM  237 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG1003|consensus

Probab=99.88  E-value=2.8e-19  Score=135.49  Aligned_cols=203  Identities=50%  Similarity=0.720  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh
Q psy1411          68 ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK  147 (270)
Q Consensus        68 e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~  147 (270)
                      +..+..+.+|+..++.+++..++++..+..++..++....+..+.++.++++...+++.++.++.+++++......+.++
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK   82 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK   82 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         148 SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEF  227 (270)
Q Consensus       148 ~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  227 (270)
                      |+++.+++..++++|.+.+.|++..++++..|.+.+..+.++++++....+.+..+.+.+...+..+..++.++..+.++
T Consensus        83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~  162 (205)
T KOG1003|consen   83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEF  162 (205)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         228 AEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       228 ~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      +++.+..|...+..|+..+.....++..+..+||++...++++
T Consensus       163 aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~~  205 (205)
T KOG1003|consen  163 AERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELENL  205 (205)
T ss_pred             HHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999875

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.51  E-value=8.8e-10  Score=110.21  Aligned_cols=261  Identities=18%  Similarity=0.267  Sum_probs=143.5

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLE   86 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~   86 (270)
                      .+..+..+++.+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+..++.
T Consensus       671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~  750 (1179)
T TIGR02168       671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA  750 (1179)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHH
Q psy1411          87 KSEERSGTATAKLAEASQAADEAN-------RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVE  159 (270)
Q Consensus        87 ~~~~~l~~~~~~l~~~e~~~~~~~-------~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~  159 (270)
                      .+...+..+...+..+...+..+.       ..+..+...+..+...+..+...+..+...+......+......+..+.
T Consensus       751 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~  830 (1179)
T TIGR02168       751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE  830 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444433       3333444344444444555555555555555555555555555555666


Q ss_pred             HHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         160 DELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV  239 (270)
Q Consensus       160 ~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~  239 (270)
                      ..+..+..++..+..++..+...+..+...+..+......+......+...+..+...+..+...+..+...+..+...+
T Consensus       831 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  910 (1179)
T TIGR02168       831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR  910 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666655555555555555555556666666666666666666666666666666666666666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy1411         240 DRLEDELGLNKDRYKSLADEMDSTFAEL  267 (270)
Q Consensus       240 ~~le~~l~~~~~~~~~~~~eld~~~~~~  267 (270)
                      ..+...+..+......+...++++...+
T Consensus       911 ~~l~~~l~~l~~~~~~~~~~~~~l~~~l  938 (1179)
T TIGR02168       911 SELRRELEELREKLAQLELRLEGLEVRI  938 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666665555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=99.48  E-value=4.3e-10  Score=92.30  Aligned_cols=194  Identities=25%  Similarity=0.338  Sum_probs=106.2

Q ss_pred             HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL   85 (270)
Q Consensus         6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el   85 (270)
                      +||..++.+++.+..++..+...+.........+...+.++...+..+...+..+..++..+...+..+..+....+..+
T Consensus         1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~   80 (237)
T PF00261_consen    1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR   80 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888888888888888888888888887777777777777777666655555555444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411          86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA  165 (270)
Q Consensus        86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~  165 (270)
                      ..++.+......++..++..+..+.........++..+...+..++..|..+...+..+...+.++...+..+.+.+..+
T Consensus        81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l  160 (237)
T PF00261_consen   81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL  160 (237)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence            44444444444444444444444444444444444444444444444444444444444444444444445555555555


Q ss_pred             HHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Q psy1411         166 EDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEK  199 (270)
Q Consensus       166 e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~  199 (270)
                      +...+.+..+...++.++..+...+..++...+.
T Consensus       161 E~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~  194 (237)
T PF00261_consen  161 EASEEKASEREDEYEEKIRDLEEKLKEAENRAEF  194 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544444444444444454444444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.44  E-value=2.9e-09  Score=106.57  Aligned_cols=259  Identities=20%  Similarity=0.286  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLD-------TTKKNLDQAVKDLEEREKALAAAESEVAALNR   76 (270)
Q Consensus         4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~   76 (270)
                      +..++..+..++..+...+..+...+..+...+..+...+.       .+...+..+...+..+...+..+..++..+..
T Consensus       675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~  754 (1179)
T TIGR02168       675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK  754 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555544444444444444443333333       33333333334444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHH
Q psy1411          77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA  156 (270)
Q Consensus        77 r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~  156 (270)
                      .+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+......+......+..+...+.
T Consensus       755 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  834 (1179)
T TIGR02168       755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA  834 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444555555555555555555555444455555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ  236 (270)
Q Consensus       157 ~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~  236 (270)
                      .+...+..+...+..+...+..+...+..+...+..+......+......+...+..+...+..+...+..+...+..+.
T Consensus       835 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  914 (1179)
T TIGR02168       835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR  914 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555544444445555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy1411         237 KEVDRLEDELGLNKDRYKSLADEMDS  262 (270)
Q Consensus       237 e~~~~le~~l~~~~~~~~~~~~eld~  262 (270)
                      ..+..+...+..+......+...+..
T Consensus       915 ~~l~~l~~~~~~~~~~~~~l~~~l~e  940 (1179)
T TIGR02168       915 RELEELREKLAQLELRLEGLEVRIDN  940 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555544444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.34  E-value=5.1e-08  Score=97.68  Aligned_cols=108  Identities=11%  Similarity=0.250  Sum_probs=51.9

Q ss_pred             HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL   85 (270)
Q Consensus         6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el   85 (270)
                      .++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+
T Consensus       674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~  753 (1164)
T TIGR02169       674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI  753 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1411          86 EKSEERSGTATAKLAEASQAADEANRMC  113 (270)
Q Consensus        86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~  113 (270)
                      ..+...+..+...+..+...+..+...+
T Consensus       754 ~~~~~el~~l~~~i~~l~~~i~~l~~el  781 (1164)
T TIGR02169       754 ENVKSELKELEARIEELEEDLHKLEEAL  781 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.33  E-value=5.7e-08  Score=97.29  Aligned_cols=99  Identities=22%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK  233 (270)
Q Consensus       154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~  233 (270)
                      .+..+...+..+..++..+..++..+...+..+...+..+......+......+...+..+...+......+..+...+.
T Consensus       393 ~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~  472 (1164)
T TIGR02169       393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY  472 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333344434444443333333333333333333333334443333333333334444


Q ss_pred             HHHHHHHHHHHHhhhHHHH
Q psy1411         234 KLQKEVDRLEDELGLNKDR  252 (270)
Q Consensus       234 ~l~e~~~~le~~l~~~~~~  252 (270)
                      .+...+..+...+..+...
T Consensus       473 ~~~~~l~~l~~~l~~l~~~  491 (1164)
T TIGR02169       473 DLKEEYDRVEKELSKLQRE  491 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444443333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.30  E-value=1.6e-07  Score=93.70  Aligned_cols=203  Identities=26%  Similarity=0.378  Sum_probs=124.8

Q ss_pred             HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL   85 (270)
Q Consensus         6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el   85 (270)
                      .++..|..++.........+...+..+......+...+..++..+..+...+..+...+..+......+..++..+...+
T Consensus       667 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  746 (1163)
T COG1196         667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL  746 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36667777777777777777888888888888888888888888888878888888777777777778788888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411          86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA  165 (270)
Q Consensus        86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~  165 (270)
                      ..+...+..+...+..++..+.........+...+..+...+......+..       ....+..+..++..+..++..|
T Consensus       747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  819 (1163)
T COG1196         747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE-------LEEELEEAERRLDALERELESL  819 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777666666655555555555554444443333333       3333333334444455555555


Q ss_pred             HHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         166 EDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLA  215 (270)
Q Consensus       166 e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  215 (270)
                      ..+...+...+..+..++..+...+..+...+..+...+..+...+..+.
T Consensus       820 ~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  869 (1163)
T COG1196         820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE  869 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444333333333333333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=99.29  E-value=1.5e-09  Score=81.47  Aligned_cols=141  Identities=33%  Similarity=0.430  Sum_probs=122.2

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLE   86 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~   86 (270)
                      ||..|+.+.+.+.++++.++..+..++..                            ....+.++.++..++..++.+++
T Consensus         1 Km~~lk~E~d~a~~r~e~~e~~~K~le~~----------------------------~~~~E~EI~sL~~K~~~lE~eld   52 (143)
T PF12718_consen    1 KMQALKLEADNAQDRAEELEAKVKQLEQE----------------------------NEQKEQEITSLQKKNQQLEEELD   52 (143)
T ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888888888888777777666554                            46667778888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHH
Q psy1411          87 KSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE  166 (270)
Q Consensus        87 ~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e  166 (270)
                      .+...+..+...+.........++    .+..++..+++.++.....|..+...+..++..++.+.+++..++.....|+
T Consensus        53 ~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E  128 (143)
T PF12718_consen   53 KLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE  128 (143)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence            999999999988888877765444    8999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHhHHHHHHHH
Q psy1411         167 DRVKSGDAKIMEL  179 (270)
Q Consensus       167 ~r~~~~~~~~~~l  179 (270)
                      .+++.+..++..+
T Consensus       129 ~k~eel~~k~~~~  141 (143)
T PF12718_consen  129 EKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998887653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG1003|consensus

Probab=99.25  E-value=2.9e-08  Score=76.02  Aligned_cols=191  Identities=21%  Similarity=0.329  Sum_probs=156.8

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTT-------KKNLDQAVKDLEEREKALAAAESEVAA   73 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~e~~~~~   73 (270)
                      |.+|+++|..+..+++.++.++..+...+.++.+..+........+       ......+..++.++..-..++...+..
T Consensus         6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE   85 (205)
T KOG1003|consen    6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE   85 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999998766555544333       334445556666666666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHh
Q psy1411          74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSR  153 (270)
Q Consensus        74 l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~  153 (270)
                      ..+++.-+++++.....+.+...+.+..+...+.-+...++.+......+....+.....++.+...+.++....+.+.+
T Consensus        86 VarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aER  165 (205)
T KOG1003|consen   86 VARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAER  165 (205)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            88888888899999988888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411         154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK  191 (270)
Q Consensus       154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~  191 (270)
                      ++..|+..+++|+..+.....+...+...++.....|.
T Consensus       166 sVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~  203 (205)
T KOG1003|consen  166 RVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE  203 (205)
T ss_pred             HHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998888888887777777777666554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.22  E-value=7.9e-07  Score=88.75  Aligned_cols=264  Identities=20%  Similarity=0.323  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEE   83 (270)
Q Consensus         4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~   83 (270)
                      +..++..+...+..+......+...+..+...+..+...+..+...+..+...+..+......+...+..+...+..+..
T Consensus       672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  751 (1163)
T COG1196         672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE  751 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888877777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411          84 DLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELE  163 (270)
Q Consensus        84 el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~  163 (270)
                      .+..+..++..+...+..+......+...+..+..........+..++..+...+..+..+...+.....+...+..++.
T Consensus       752 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~  831 (1163)
T COG1196         752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE  831 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666666666666666666666666666666666666666666666666665555555555555555555555666666


Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         164 VAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE  243 (270)
Q Consensus       164 ~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le  243 (270)
                      .+..++..+..++..+...+..+...+..+......+......+...+..+......+...+..+...+..+...+..+.
T Consensus       832 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  911 (1163)
T COG1196         832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR  911 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666665555566666666666666666666666666666666666666666666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHh
Q psy1411         244 DELGLNKDRYKSLADEMDSTFAEL  267 (270)
Q Consensus       244 ~~l~~~~~~~~~~~~eld~~~~~~  267 (270)
                      ..+..+..+...+...+......+
T Consensus       912 ~~~~~l~~~~~~~~~~~~~~~~~~  935 (1163)
T COG1196         912 ERLEELEAKLERLEVELPELEEEL  935 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            666666666666665555554433

>KOG0161|consensus

Probab=98.94  E-value=4.5e-05  Score=77.74  Aligned_cols=6  Identities=50%  Similarity=0.545  Sum_probs=2.2

Q ss_pred             HHHHHH
Q psy1411         157 FVEDEL  162 (270)
Q Consensus       157 ~l~~~l  162 (270)
                      .+++++
T Consensus      1045 kle~el 1050 (1930)
T KOG0161|consen 1045 KLEGEL 1050 (1930)
T ss_pred             HHHHHH
Confidence            333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.94  E-value=4e-05  Score=72.34  Aligned_cols=115  Identities=12%  Similarity=0.264  Sum_probs=73.8

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLE   86 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~   86 (270)
                      +|..+...-.+...+++.+...+...+....-++.+++.++..+......+......+..+..+...+...+..+.+.++
T Consensus       309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d  388 (775)
T PF10174_consen  309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD  388 (775)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334445566666666666666666777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q psy1411          87 KSEERSGTATAKLAEASQAADEANRMCKVLENRSQ  121 (270)
Q Consensus        87 ~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~  121 (270)
                      .....+..+..+++.++..+.+-+..+..+..++.
T Consensus       389 ~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  389 KKERKINVLQKKIENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777777776666666665555555555544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.91  E-value=7.7e-07  Score=66.87  Aligned_cols=137  Identities=27%  Similarity=0.391  Sum_probs=103.7

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAES---EVAALNRK   77 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~---~~~~l~~r   77 (270)
                      |.++|-.-+......+.+...+..++......+..+..+......+...+..+...+..+...+.....   .+..+.+|
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rr   81 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRR   81 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Confidence            666777777666666666666666666666666655555555555555555555555555555444443   34589999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy1411          78 VQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEA  137 (270)
Q Consensus        78 ~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~  137 (270)
                      +..|+.+++.....+..+..++..+....+.+++.+..|+.+....+..++.+...+..+
T Consensus        82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999998887643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0161|consensus

Probab=98.91  E-value=6.3e-05  Score=76.70  Aligned_cols=116  Identities=19%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             HHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy1411         100 AEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL  179 (270)
Q Consensus       100 ~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l  179 (270)
                      ...+..+..+..++..+...+..+..+...++..+.+....+.....+...+......++..+++++.+++.-......+
T Consensus       960 ~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~ 1039 (1930)
T KOG0161|consen  960 NAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMEL 1039 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444444444444445555555555555555555555555544444444


Q ss_pred             HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         180 EEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLA  215 (270)
Q Consensus       180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  215 (270)
                      +.....+..++..+......+......+...+...+
T Consensus      1040 Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke 1075 (1930)
T KOG0161|consen 1040 EKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKE 1075 (1930)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444333333333333333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.81  E-value=0.00014  Score=68.75  Aligned_cols=43  Identities=7%  Similarity=0.140  Sum_probs=19.3

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKN   49 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   49 (270)
                      ..+.+..+++.+...++.++..+..+...+......+..+...
T Consensus       122 E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~  164 (775)
T PF10174_consen  122 ERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEM  164 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=98.79  E-value=0.00026  Score=72.00  Aligned_cols=47  Identities=6%  Similarity=0.139  Sum_probs=18.3

Q ss_pred             hhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         168 RVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL  214 (270)
Q Consensus       168 r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  214 (270)
                      .+..+...+..+...+..+...+..+.............+.+++..+
T Consensus       978 el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606       978 ELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444433333333333333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0250|consensus

Probab=98.68  E-value=0.00041  Score=66.41  Aligned_cols=188  Identities=19%  Similarity=0.308  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy1411          63 ALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAE  142 (270)
Q Consensus        63 ~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~  142 (270)
                      .+.....++......+...+..+..+...+.....++..++..+.+.+..+..+......-..++..+...+...+....
T Consensus       275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~  354 (1074)
T KOG0250|consen  275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN  354 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         143 DADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI-MELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA  221 (270)
Q Consensus       143 ~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (270)
                      +.+..+.+....+..+....+.++..+..+..+. ..+..++.+....+..+....+++......+...+..+......-
T Consensus       355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~  434 (1074)
T KOG0250|consen  355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE  434 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888888887777777 777777777777777777776666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy1411         222 EARAEFAEKTVKKLQKEVDRLEDELGLNK  250 (270)
Q Consensus       222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~  250 (270)
                      .......+..+..++..+......+..+.
T Consensus       435 ~ee~~~i~~~i~~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  435 EEEKEHIEGEILQLRKKIENISEELKDLK  463 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666555554444433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.60  E-value=0.00047  Score=63.21  Aligned_cols=122  Identities=25%  Similarity=0.349  Sum_probs=59.8

Q ss_pred             HHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         139 LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL  218 (270)
Q Consensus       139 ~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (270)
                      .....+......+...+.....++..+..+...+...+..|...+..+...|................+...+..+....
T Consensus       302 ~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea  381 (522)
T PF05701_consen  302 EEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA  381 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444555555555555555555555555555554444444444444555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy1411         219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM  260 (270)
Q Consensus       219 ~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~el  260 (270)
                      ..+..........+..+...+......+...+.++.-...++
T Consensus       382 e~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~  423 (522)
T PF05701_consen  382 EEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA  423 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444545555555555444444444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.58  E-value=0.00048  Score=62.07  Aligned_cols=48  Identities=13%  Similarity=0.358  Sum_probs=18.9

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAV   54 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   54 (270)
                      +++...++...+......++.....++..+..++..+...+.....+.
T Consensus       144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~  191 (546)
T PF07888_consen  144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK  191 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444333333444443333333333333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0996|consensus

Probab=98.53  E-value=0.0011  Score=63.88  Aligned_cols=59  Identities=20%  Similarity=0.244  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411          77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK  135 (270)
Q Consensus        77 r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~  135 (270)
                      .+..+...+..+...++.....+.+++...+.+...+......+..+.......+..+.
T Consensus       406 ~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~  464 (1293)
T KOG0996|consen  406 KLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD  464 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333344444333333333333

>KOG0977|consensus

Probab=98.53  E-value=0.00068  Score=61.14  Aligned_cols=248  Identities=19%  Similarity=0.234  Sum_probs=140.2

Q ss_pred             HhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          13 MEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS   92 (270)
Q Consensus        13 ~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l   92 (270)
                      .-++.....-..++..+..+...+..+...+.............+......+..+++++..+.+++..+++++..+..+.
T Consensus        99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en  178 (546)
T KOG0977|consen   99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN  178 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333334444444444444444444444444444555555666677788888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH----H--------------------HHHHHhHhhhhH
Q psy1411          93 GTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK----E--------------------ARLLAEDADAKS  148 (270)
Q Consensus        93 ~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~----~--------------------~~~~~~~~~~~~  148 (270)
                      ..+...|..+...++.----...+.+++..+.+++..+.....    +                    +...+.+....|
T Consensus       179 ~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqy  258 (546)
T KOG0977|consen  179 SRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQY  258 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH
Confidence            8888888888887776666667777777777777777663332    1                    111222222222


Q ss_pred             HHHHhHHHHHHHHHHHH-HHhhHhHH-------HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy1411         149 DEVSRKLAFVEDELEVA-EDRVKSGD-------AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL--  218 (270)
Q Consensus       149 ~e~~~~~~~l~~~l~~~-e~r~~~~~-------~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  218 (270)
                      +..   ...-..++..| ..++..+.       .......+++..+...+-.+..+..++...-..+...|..+.-.+  
T Consensus       259 e~~---~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e  335 (546)
T KOG0977|consen  259 EAI---SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE  335 (546)
T ss_pred             HHH---HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence            211   11122222222 12222222       222334455555555555555555555555555555666555443  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy1411         219 --KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDST  263 (270)
Q Consensus       219 --~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~  263 (270)
                        .-.+..+...+..+..++++...+..+++.+=--...+..+|..+
T Consensus       336 ~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y  382 (546)
T KOG0977|consen  336 DQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY  382 (546)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence              334445666677777777777777777776666666666666554

>PRK03918 chromosome segregation protein; Provisional

Probab=98.37  E-value=0.0033  Score=61.72  Aligned_cols=10  Identities=40%  Similarity=0.458  Sum_probs=3.6

Q ss_pred             HHHHHhhhHH
Q psy1411         241 RLEDELGLNK  250 (270)
Q Consensus       241 ~le~~l~~~~  250 (270)
                      .+...+..+.
T Consensus       463 ~l~~~~~~l~  472 (880)
T PRK03918        463 RIEKELKEIE  472 (880)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.37  E-value=0.0012  Score=56.67  Aligned_cols=129  Identities=16%  Similarity=0.207  Sum_probs=55.3

Q ss_pred             HHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVD--------LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRK   77 (270)
Q Consensus         6 ~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r   77 (270)
                      ..|..|=.-+...-+++..++.....+...+..+...        ...+...+..+...+..+......+..++..+...
T Consensus         4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e   83 (312)
T PF00038_consen    4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE   83 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence            3344444444444444444444444444433332222        22233344444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411          78 VQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL  134 (270)
Q Consensus        78 ~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l  134 (270)
                      +..+...+.........+...+..++..++........++.++..+.+++..+....
T Consensus        84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h  140 (312)
T PF00038_consen   84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNH  140 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Confidence            444444444444444444444444444444444444445555555555554444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971|consensus

Probab=98.36  E-value=0.0025  Score=59.96  Aligned_cols=55  Identities=22%  Similarity=0.282  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy1411         199 KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRY  253 (270)
Q Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~  253 (270)
                      ++...++.+.--+..+......+...+-+....|.+.++....+...++.+.-..
T Consensus       494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~  548 (1243)
T KOG0971|consen  494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQ  548 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3555566665666666666666666666777777777777777777666555443

>KOG0971|consensus

Probab=98.36  E-value=0.0025  Score=59.91  Aligned_cols=74  Identities=12%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV  185 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~  185 (270)
                      +++.++.....+.+.+-.++.-..........+..+++-....+..+...-+.+.++++.++..+..|.++++.
T Consensus       369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA  442 (1243)
T KOG0971|consen  369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA  442 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666665555555555566666666666666666666666777777777666666543

>PRK03918 chromosome segregation protein; Provisional

Probab=98.36  E-value=0.0035  Score=61.50  Aligned_cols=11  Identities=9%  Similarity=0.184  Sum_probs=4.0

Q ss_pred             hHHHHHHHHHH
Q psy1411         248 LNKDRYKSLAD  258 (270)
Q Consensus       248 ~~~~~~~~~~~  258 (270)
                      .+...+..+..
T Consensus       463 ~l~~~~~~l~~  473 (880)
T PRK03918        463 RIEKELKEIEE  473 (880)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.34  E-value=0.0025  Score=59.17  Aligned_cols=208  Identities=14%  Similarity=0.226  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHh----------------HhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRAD----------------KVEVDLDTTKKNLDQAVKDLEEREKALAA   66 (270)
Q Consensus         3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   66 (270)
                      .+..++..|..+++....+...++..+..+..+..                .+...+..++..+..+..++.........
T Consensus        33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~  112 (617)
T PF15070_consen   33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQ  112 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666655333                12333333333333333333222222122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q psy1411          67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANR---MCKVLENRSQQDEERMDQLTNQLKEARLLAED  143 (270)
Q Consensus        67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~---~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~  143 (270)
                      +..-......|+..++..+.++.........-++.+......+.+   .-..|+.++..+++..-.+.+.-.+....+..
T Consensus       113 Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~  192 (617)
T PF15070_consen  113 LSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQS  192 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence            221122223344444444444444444444444444433333332   23445555555555555555554444555555


Q ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Q psy1411         144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQ  210 (270)
Q Consensus       144 ~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  210 (270)
                      ......++..++..+...+..+..++..-...+..|....+.....|..+.+.-..+....+.+...
T Consensus       193 Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q  259 (617)
T PF15070_consen  193 EQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ  259 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555566777777788888888888777777777777777777777777665544444444444444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.33  E-value=0.0024  Score=58.62  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         155 LAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA  225 (270)
Q Consensus       155 ~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  225 (270)
                      +.++..+|+.....+..+...+..|......+..+|.........+..........+..+..++......+
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL  353 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL  353 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555554444444444444444444444444444444333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0994|consensus

Probab=98.29  E-value=0.0043  Score=59.88  Aligned_cols=120  Identities=16%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHH
Q psy1411          72 AALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEV  151 (270)
Q Consensus        72 ~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~  151 (270)
                      .....+...+....+.+.+.++.+......+...+..+...+....+.+..++++....+..+..+...+.++....+++
T Consensus      1552 ~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1552 ERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444445555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411         152 SRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK  191 (270)
Q Consensus       152 ~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~  191 (270)
                      ..++.....+...++..+..+..+....+..++.+...++
T Consensus      1632 k~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~ 1671 (1758)
T KOG0994|consen 1632 KHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYE 1671 (1758)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555554444444444444444433

>KOG0996|consensus

Probab=98.28  E-value=0.0048  Score=59.74  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=9.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHH
Q psy1411         117 ENRSQQDEERMDQLTNQLKEAR  138 (270)
Q Consensus       117 ~~~~~~~e~~~~~le~~l~~~~  138 (270)
                      ...+.....++..+...+...+
T Consensus       439 ~~~i~~~~~ei~~L~~~~~~~~  460 (1293)
T KOG0996|consen  439 RIEIQKCQTEIEQLEELLEKEE  460 (1293)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443333

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.27  E-value=0.0037  Score=58.13  Aligned_cols=62  Identities=11%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1411          53 AVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCK  114 (270)
Q Consensus        53 ~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~  114 (270)
                      +...+..+......+..++..+...+..+...+..+...+..+...+..++..+..+.....
T Consensus       218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~  279 (562)
T PHA02562        218 KQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK  279 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444344344444444444444444444443333

>PRK11637 AmiB activator; Provisional

Probab=98.27  E-value=0.0029  Score=56.76  Aligned_cols=79  Identities=10%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          27 GQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA  105 (270)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~  105 (270)
                      ..+..+...+..+...+..++..+..+...+..+..++..+...+..+...+..++.++..+...+..++..+......
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333343444444444444444444444444444444444444444444444444444444444444444333333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.26  E-value=0.0022  Score=55.08  Aligned_cols=45  Identities=22%  Similarity=0.141  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy1411         220 EAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTF  264 (270)
Q Consensus       220 ~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~  264 (270)
                      .....+..++..+..++..+......++.+-.-.-.+..+|..+.
T Consensus       259 ~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR  303 (312)
T PF00038_consen  259 EYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYR  303 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            344445555566666666665555555555555555566665543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0964|consensus

Probab=98.26  E-value=0.0046  Score=58.72  Aligned_cols=64  Identities=14%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy1411         200 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDST  263 (270)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~  263 (270)
                      +...+.........+...+..++..+......+..+...+.....+++.+...+..+..++|.+
T Consensus       402 l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del  465 (1200)
T KOG0964|consen  402 LKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL  465 (1200)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444444444444444444444444444444444444444444433

>KOG0250|consensus

Probab=98.24  E-value=0.0056  Score=59.02  Aligned_cols=8  Identities=50%  Similarity=0.451  Sum_probs=2.8

Q ss_pred             HHHHHHhH
Q psy1411         136 EARLLAED  143 (270)
Q Consensus       136 ~~~~~~~~  143 (270)
                      .++..+..
T Consensus       341 ~~r~~~~~  348 (1074)
T KOG0250|consen  341 EARKDLDD  348 (1074)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG0933|consensus

Probab=98.23  E-value=0.0056  Score=58.38  Aligned_cols=181  Identities=18%  Similarity=0.214  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHH
Q psy1411          73 ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS  152 (270)
Q Consensus        73 ~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~  152 (270)
                      .+...+..+.+++..+..++.+....+..+...+..++..++....   .-+..+..+...+..+...++.....++...
T Consensus       738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~---~re~rlkdl~keik~~k~~~e~~~~~~ek~~  814 (1174)
T KOG0933|consen  738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA---NRERRLKDLEKEIKTAKQRAEESSKELEKRE  814 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455556666666666655555555555555544444433322   1233444444445444555555555554444


Q ss_pred             hHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTV  232 (270)
Q Consensus       153 ~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~  232 (270)
                      .....+.-+.+.++..+......+..+...+..+..++..+.................+...........+.+...-..+
T Consensus       815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~  894 (1174)
T KOG0933|consen  815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ  894 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence            44555555555555555555555555555555555555555555555555556666666666666666666665555555


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH
Q psy1411         233 KKLQKEVDRLEDELGLNKDRYKSL  256 (270)
Q Consensus       233 ~~l~e~~~~le~~l~~~~~~~~~~  256 (270)
                      ..+...........+.+...+.++
T Consensus       895 e~~~~e~~~~~l~~kkle~e~~~~  918 (1174)
T KOG0933|consen  895 EKCLSEKSDGELERKKLEHEVTKL  918 (1174)
T ss_pred             HHHHHHhhcccchHHHHHhHHHHh
Confidence            554444444444444333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.13  E-value=0.0073  Score=56.20  Aligned_cols=17  Identities=35%  Similarity=0.546  Sum_probs=7.4

Q ss_pred             HhHHHHHHHHHHHHHHh
Q psy1411         152 SRKLAFVEDELEVAEDR  168 (270)
Q Consensus       152 ~~~~~~l~~~l~~~e~r  168 (270)
                      ..++..++..+.+|..+
T Consensus       121 EerL~ELE~~le~~~e~  137 (617)
T PF15070_consen  121 EERLAELEEELERLQEQ  137 (617)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.08  E-value=7.1e-07  Score=85.96  Aligned_cols=175  Identities=20%  Similarity=0.250  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          22 ADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE  101 (270)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~  101 (270)
                      +..++..+.++...+......+..+......+...+.++...+...+..+..+.+....+...+..+...++.-......
T Consensus       182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~  261 (859)
T PF01576_consen  182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA  261 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence            33334444444444444444444444444445555555555555555555555554445555555554444444433333


Q ss_pred             HHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH---------------HHhHHHHHHHHHHHHH
Q psy1411         102 ASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE---------------VSRKLAFVEDELEVAE  166 (270)
Q Consensus       102 ~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e---------------~~~~~~~l~~~l~~~e  166 (270)
                      +...+..+..++..+...+..-......+...+..+...+.....+|+.               +..++..+...+....
T Consensus       262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~  341 (859)
T PF01576_consen  262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN  341 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333343333333333333333333333232222222211               1223344444444444


Q ss_pred             HhhHhHHHHHHHHHHHHHHHhhhHhhHHHH
Q psy1411         167 DRVKSGDAKIMELEEELKVVGNSLKSLEVS  196 (270)
Q Consensus       167 ~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~  196 (270)
                      ..+..++.....|...+..+...|......
T Consensus       342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~  371 (859)
T PF01576_consen  342 AKVSSLEKTKKRLQGELEDLTSELEKAQAA  371 (859)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444445555555555544444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.05  E-value=0.019  Score=58.10  Aligned_cols=52  Identities=17%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHH
Q psy1411           4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVK   55 (270)
Q Consensus         4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (270)
                      ++.++..+...+..+......++..+......+..+...+..+...+.....
T Consensus       605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (1201)
T PF12128_consen  605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQ  656 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4445555555554444444444444444444444433333333333333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.03  E-value=0.0046  Score=50.21  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411          66 AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL  134 (270)
Q Consensus        66 ~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l  134 (270)
                      .+-.+..++..++......+..+...+..+...+..+...++.+..+...++..+..+...+..++..+
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555566655555555555555555555554444444444444444444444444444444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.99  E-value=0.016  Score=54.87  Aligned_cols=70  Identities=7%  Similarity=0.177  Sum_probs=29.1

Q ss_pred             HHHhHhhHHhHHHHHHHHHHHHHHHHhH-------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          11 MKMEKDSAMDKADTCEGQAKDANLRADK-------VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM   80 (270)
Q Consensus        11 l~~e~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~   80 (270)
                      |..++..+...+...+..-.+++.++..       +..++..++.....++.++..+......=...+..+++|+..
T Consensus       423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e  499 (697)
T PF09726_consen  423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE  499 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444333       333344444444444444444444433333333444433333

; GO: 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.98  E-value=0.015  Score=54.24  Aligned_cols=14  Identities=36%  Similarity=0.548  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHhHhh
Q psy1411           4 IKKKMQAMKMEKDS   17 (270)
Q Consensus         4 i~~kl~~l~~e~~~   17 (270)
                      |-.+|..++..+..
T Consensus       254 i~~~i~~l~~~i~~  267 (569)
T PRK04778        254 IEKEIQDLKEQIDE  267 (569)
T ss_pred             hHHHHHHHHHHHHH
Confidence            33444444444444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.98  E-value=0.006  Score=49.58  Aligned_cols=58  Identities=24%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRV  169 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~  169 (270)
                      +...|...++.+......++..+..+......+...+..+..++..++..+.....++
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~  147 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL  147 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555555444433

>KOG4674|consensus

Probab=97.93  E-value=0.035  Score=56.85  Aligned_cols=194  Identities=12%  Similarity=0.138  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy1411           4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER-------EKALAAAESEVAALNR   76 (270)
Q Consensus         4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~e~~~~~l~~   76 (270)
                      +.++|..+...++.....+..++..+..+...+..+......+...+..+....+.+       ..+...+...+.....
T Consensus        57 ~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~  136 (1822)
T KOG4674|consen   57 LEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKA  136 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666666666666666666554444444333333333222222       2222223333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh--
Q psy1411          77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEAN-------RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK--  147 (270)
Q Consensus        77 r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~-------~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~--  147 (270)
                      .+..+..++..+...+......+.+++.......       .....+......+.....-+...|..-...+....+.  
T Consensus       137 ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s  216 (1822)
T KOG4674|consen  137 ELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHS  216 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Confidence            4444444444444444433333333333333332       2333334444444444444444444444444444444  


Q ss_pred             --HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHH
Q psy1411         148 --SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSE  197 (270)
Q Consensus       148 --~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  197 (270)
                        +..+..++..+...+......+..+..+...|...+......+..+....
T Consensus       217 ~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~  268 (1822)
T KOG4674|consen  217 IEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTA  268 (1822)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              55555566666666666666666666666666666666666666555543

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.90  E-value=0.023  Score=53.82  Aligned_cols=28  Identities=36%  Similarity=0.462  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy1411         156 AFVEDELEVAEDRVKSGDAKIMELEEEL  183 (270)
Q Consensus       156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~  183 (270)
                      ..++.++..+...+...+.++..|+..+
T Consensus       548 ~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  548 RQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=97.90  E-value=0.016  Score=52.04  Aligned_cols=29  Identities=10%  Similarity=0.220  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         211 IKQLAVKLKEAEARAEFAEKTVKKLQKEV  239 (270)
Q Consensus       211 ~~~l~~~~~~~~~~~~~~e~~~~~l~e~~  239 (270)
                      +..+..........+..+......+...|
T Consensus       221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I  249 (428)
T PRK11637        221 LTGLESSLQKDQQQLSELRANESRLRDSI  249 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>KOG0964|consensus

Probab=97.90  E-value=0.024  Score=54.09  Aligned_cols=43  Identities=14%  Similarity=0.151  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy1411          95 ATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEA  137 (270)
Q Consensus        95 ~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~  137 (270)
                      ....+..+...+.+...++..+.-.+..+.++-..+..++..+
T Consensus       326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l  368 (1200)
T KOG0964|consen  326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKL  368 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444433

>KOG0994|consensus

Probab=97.89  E-value=0.028  Score=54.56  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHH
Q psy1411          76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKL  155 (270)
Q Consensus        76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~  155 (270)
                      ..+......|..+++........+..+-..+.+++..+..|+............++.....+...+..++..+..+...+
T Consensus      1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444455555555555544444444444444444444444444444443333333


Q ss_pred             HH
Q psy1411         156 AF  157 (270)
Q Consensus       156 ~~  157 (270)
                      +.
T Consensus      1671 ~~ 1672 (1758)
T KOG0994|consen 1671 EL 1672 (1758)
T ss_pred             HH
Confidence            33

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.86  E-value=3.1e-06  Score=81.63  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             HHHhHHHHHHHHHHHHHHhhHh
Q psy1411         150 EVSRKLAFVEDELEVAEDRVKS  171 (270)
Q Consensus       150 e~~~~~~~l~~~l~~~e~r~~~  171 (270)
                      ++.+.+..+..++..|..+++.
T Consensus       289 ~l~~qlsk~~~El~~~k~K~e~  310 (859)
T PF01576_consen  289 ELERQLSKLNAELEQWKKKYEE  310 (859)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHH
Confidence            3444555566666666555544

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0977|consensus

Probab=97.83  E-value=0.023  Score=51.62  Aligned_cols=139  Identities=21%  Similarity=0.292  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhH---------------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK---------------VEVDLDTTKKNLDQAVKDLEEREKALAAAES   69 (270)
Q Consensus         5 ~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~   69 (270)
                      |+.|..|-..+...-++.--++.+-..+...+..               ...++..++..+++.......+...+..+..
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~  120 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE  120 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            6677777777777777777777776666665554               3445677777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q psy1411          70 EVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAED  143 (270)
Q Consensus        70 ~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~  143 (270)
                      ++..+..+.......+......+......+..++..+.-+.+.++.++..+..+..+...+...|..++..++.
T Consensus       121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~  194 (546)
T KOG0977|consen  121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD  194 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            77777777777666666666666655555555555555555555555555555555555555555555544433

>PRK09039 hypothetical protein; Validated

Probab=97.83  E-value=0.014  Score=50.60  Aligned_cols=16  Identities=6%  Similarity=0.090  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy1411          78 VQMIEEDLEKSEERSG   93 (270)
Q Consensus        78 ~~~le~el~~~~~~l~   93 (270)
                      ...++..+..+..++.
T Consensus        76 ~~~l~~~l~~l~~~l~   91 (343)
T PRK09039         76 NQDLQDSVANLRASLS   91 (343)
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            3333334433333333

>KOG0933|consensus

Probab=97.74  E-value=0.047  Score=52.44  Aligned_cols=18  Identities=17%  Similarity=0.180  Sum_probs=6.7

Q ss_pred             hHhhHHhHHHHHHHHHHH
Q psy1411          14 EKDSAMDKADTCEGQAKD   31 (270)
Q Consensus        14 e~~~~~~~~~~~~~~l~~   31 (270)
                      ++......++.++..+..
T Consensus       685 ~~~~~q~el~~le~eL~~  702 (1174)
T KOG0933|consen  685 ELRAIQKELEALERELKS  702 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.68  E-value=0.048  Score=50.86  Aligned_cols=32  Identities=6%  Similarity=0.161  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHH
Q psy1411           3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANL   34 (270)
Q Consensus         3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~   34 (270)
                      .+...+..+..++..+...-..-...+..+..
T Consensus       116 ~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~  147 (569)
T PRK04778        116 LIEEDIEQILEELQELLESEEKNREEVEQLKD  147 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444333333333333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.68  E-value=0.028  Score=48.19  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS   88 (270)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~   88 (270)
                      ..++.++..++.....+..+.+....++.......+.+..++..+
T Consensus        84 r~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a  128 (499)
T COG4372          84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAA  128 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333

>KOG4643|consensus

Probab=97.63  E-value=0.069  Score=51.29  Aligned_cols=81  Identities=16%  Similarity=0.284  Sum_probs=49.0

Q ss_pred             ChH--HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHH--hHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           1 MDA--IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRA--DKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNR   76 (270)
Q Consensus         1 ~~~--i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~   76 (270)
                      ||.  +|-+++.|+.+=..+.+.-.-++.++..++.+-  ..++.++=.++..+..+..+....+.++.++--+...+..
T Consensus       257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~  336 (1195)
T KOG4643|consen  257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV  336 (1195)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            455  788888888876677666667777777776655  4455555555555555555555555555555444444444


Q ss_pred             HHHHH
Q psy1411          77 KVQMI   81 (270)
Q Consensus        77 r~~~l   81 (270)
                      .-.+|
T Consensus       337 q~eqL  341 (1195)
T KOG4643|consen  337 QKEQL  341 (1195)
T ss_pred             HHHHh
Confidence            33333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.62  E-value=0.029  Score=46.85  Aligned_cols=88  Identities=16%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         156 AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL  235 (270)
Q Consensus       156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l  235 (270)
                      ..+-.+++.+...+..+-.++..|.......+..+-.+-...+.+....+.+...+..+..........+..+...+..+
T Consensus       161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~  240 (294)
T COG1340         161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL  240 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444334444444444444444444444444444444444444444


Q ss_pred             HHHHHHHH
Q psy1411         236 QKEVDRLE  243 (270)
Q Consensus       236 ~e~~~~le  243 (270)
                      ...+..+.
T Consensus       241 ~k~ik~l~  248 (294)
T COG1340         241 EKKIKALR  248 (294)
T ss_pred             HHHHHHHH
Confidence            44443333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.52  E-value=0.15  Score=52.43  Aligned_cols=32  Identities=6%  Similarity=0.110  Sum_probs=13.1

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADK   38 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~   38 (270)
                      +|..|..++..+......+...+..+..+...
T Consensus       743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~  774 (1353)
T TIGR02680       743 RIAELDARLAAVDDELAELARELRALGARQRA  774 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.43  E-value=0.18  Score=51.29  Aligned_cols=64  Identities=20%  Similarity=0.305  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy1411         204 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL  267 (270)
Q Consensus       204 ~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~  267 (270)
                      +..+...+.........+......+......++.........+..+......+...++.+...|
T Consensus       471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444444444455555555555555555566666666666666666666666665555443

>KOG0018|consensus

Probab=97.41  E-value=0.14  Score=49.64  Aligned_cols=47  Identities=17%  Similarity=0.303  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411         219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA  265 (270)
Q Consensus       219 ~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~  265 (270)
                      ......+......+..+...+..+...+...+..++++..+...++.
T Consensus       852 ~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~  898 (1141)
T KOG0018|consen  852 EKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS  898 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence            34444455555555555666666666666666666666666665554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.41  E-value=0.11  Score=48.32  Aligned_cols=14  Identities=7%  Similarity=0.093  Sum_probs=5.3

Q ss_pred             hhhhhhHHHHHHHH
Q psy1411         118 NRSQQDEERMDQLT  131 (270)
Q Consensus       118 ~~~~~~e~~~~~le  131 (270)
                      .++..+..+++..+
T Consensus       408 ~rl~~L~~qWe~~R  421 (594)
T PF05667_consen  408 QRLVELAQQWEKHR  421 (594)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>KOG4674|consensus

Probab=97.36  E-value=0.24  Score=51.15  Aligned_cols=228  Identities=13%  Similarity=0.145  Sum_probs=126.8

Q ss_pred             HHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           8 MQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEK   87 (270)
Q Consensus         8 l~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~   87 (270)
                      +..+..+...+...++.....+..+......+..+-+.+...+.....++..+...+..+..++..+......++..+..
T Consensus        89 L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e  168 (1822)
T KOG4674|consen   89 LEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQE  168 (1822)
T ss_pred             HHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444455555555555555555555555555555566666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH----HHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411          88 SEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ----LKEARLLAEDADAKSDEVSRKLAFVEDELE  163 (270)
Q Consensus        88 ~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~----l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~  163 (270)
                      +...--..+-+...+.....-+.....-|...+....+.+..++..    ..++...+..+...|.++...+.++.....
T Consensus       169 ~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~  248 (1822)
T KOG4674|consen  169 TQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNE  248 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555666666666666666666666666666666666666666    556666666666667676777777777777


Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHhhhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         164 VAEDRVKSGDAKIMELEEELKVVGNSLK----SLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL  235 (270)
Q Consensus       164 ~~e~r~~~~~~~~~~l~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l  235 (270)
                      .+...++..-..+..+-.........+.    ......+-+......+......+...+..+..-++++...+...
T Consensus       249 eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~  324 (1822)
T KOG4674|consen  249 ELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKEN  324 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            7777666666666665555444433322    22222222333334444444444444444444444444444333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.36  E-value=0.24  Score=51.10  Aligned_cols=101  Identities=13%  Similarity=0.208  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE   82 (270)
Q Consensus         3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le   82 (270)
                      -|..++..|..+++.+... ..+..........+..+...+..+...+......+..+...+.....++..+...+..+.
T Consensus       318 ELe~rL~kLEkQaEkA~ky-leL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq  396 (1486)
T PRK04863        318 ELNEAESDLEQDYQAASDH-LNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK  396 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555565555555332 222222112223333444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy1411          83 EDLEKSEERSGTATAKLAEASQ  104 (270)
Q Consensus        83 ~el~~~~~~l~~~~~~l~~~e~  104 (270)
                      ..+..+...+...+..+.....
T Consensus       397 eqLaelqqel~elQ~el~q~qq  418 (1486)
T PRK04863        397 SQLADYQQALDVQQTRAIQYQQ  418 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444433333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.32  E-value=0.089  Score=45.26  Aligned_cols=44  Identities=20%  Similarity=0.378  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEK   87 (270)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~   87 (270)
                      ...+.+......++..+.....+..+.+..+...-..+..++..
T Consensus       112 ~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~  155 (499)
T COG4372         112 QKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT  155 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444333333333333333333333333

>KOG0018|consensus

Probab=97.31  E-value=0.19  Score=48.81  Aligned_cols=92  Identities=20%  Similarity=0.296  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK  233 (270)
Q Consensus       154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~  233 (270)
                      .+.++..+...-...+.....+-.++++++..+...+..+......+......+......+...+..+............
T Consensus       382 el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~  461 (1141)
T KOG0018|consen  382 ELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPY  461 (1141)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHH
Q psy1411         234 KLQKEVDRLEDE  245 (270)
Q Consensus       234 ~l~e~~~~le~~  245 (270)
                      .+...+......
T Consensus       462 e~n~eL~~~~~q  473 (1141)
T KOG0018|consen  462 ELNEELVEVLDQ  473 (1141)
T ss_pred             HHHHHHHHHHHH
Confidence            444444333333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.24  E-value=0.091  Score=43.92  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=18.8

Q ss_pred             HHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         182 ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAE  229 (270)
Q Consensus       182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e  229 (270)
                      ++..+......+......+....+.+...+..+.....+++..++.+-
T Consensus       166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h  213 (294)
T COG1340         166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH  213 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333334444444444444444444444333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.22  E-value=0.095  Score=43.64  Aligned_cols=53  Identities=25%  Similarity=0.270  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411          55 KDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAAD  107 (270)
Q Consensus        55 ~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~  107 (270)
                      ..++....+++.+..+...+..++..-...-++++..++....++..+-...+
T Consensus        56 kTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d  108 (305)
T PF14915_consen   56 KTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD  108 (305)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33444444444444444444444444444444444444444444444444333

>PRK11281 hypothetical protein; Provisional

Probab=97.09  E-value=0.38  Score=48.17  Aligned_cols=23  Identities=4%  Similarity=-0.002  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         207 YKRQIKQLAVKLKEAEARAEFAE  229 (270)
Q Consensus       207 ~~~~~~~l~~~~~~~~~~~~~~e  229 (270)
                      ....+..+..+...+...++.+.
T Consensus       297 ~t~~~~~l~~~~~~~~~~l~~~~  319 (1113)
T PRK11281        297 ATEKLNTLTQQNLRVKNWLDRLT  319 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.09  E-value=0.071  Score=39.74  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=16.2

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTK   47 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   47 (270)
                      ++...+.+.+.+.+++..++..+...+.....+..+..+.+
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k   51 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSK   51 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33334444444444444444444433333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.04  E-value=0.33  Score=46.53  Aligned_cols=119  Identities=21%  Similarity=0.305  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhH
Q psy1411          69 SEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS  148 (270)
Q Consensus        69 ~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~  148 (270)
                      .++..+..-...++..+..+...++....++.+.+..+.++...+..+......++.++.........+...+..+..++
T Consensus       596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~  675 (769)
T PF05911_consen  596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA  675 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            33333333334444444444444444444444444444444444444444444444444444444444444444444445


Q ss_pred             HHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q psy1411         149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVG  187 (270)
Q Consensus       149 ~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~  187 (270)
                      ..+..++..|+.++..-..-...+..+-..|+.++....
T Consensus       676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~  714 (769)
T PF05911_consen  676 EELQSKISSLEEELEKERALSEELEAKCRELEEELERMK  714 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence            555555555555555554444444444444444444443

The function of this family is unknown.

>KOG0980|consensus

Probab=97.01  E-value=0.34  Score=46.21  Aligned_cols=62  Identities=15%  Similarity=0.182  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHH
Q psy1411          67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMD  128 (270)
Q Consensus        67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~  128 (270)
                      .++.++.+..+...+...-..+-.....+..+++..+....+.++....+...+..+..+..
T Consensus       422 ~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~  483 (980)
T KOG0980|consen  422 AENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG  483 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333344444444444433333333333333333333333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=97.00  E-value=0.086  Score=39.14  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=63.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          18 AMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATA   97 (270)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~   97 (270)
                      +......+......+......+..++.........++..+..--......-..+..+......+...+..+......+..
T Consensus         8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~   87 (132)
T PF07926_consen    8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA   87 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555566666666666666666666555555555666666666666666666666666666666


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy1411          98 KLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ  133 (270)
Q Consensus        98 ~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~  133 (270)
                      .+...+..|.   .....++..+..+...++.+..+
T Consensus        88 ~l~~~e~sw~---~qk~~le~e~~~~~~r~~dL~~Q  120 (132)
T PF07926_consen   88 ELEESEASWE---EQKEQLEKELSELEQRIEDLNEQ  120 (132)
T ss_pred             HHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655554   23344444444444444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4673|consensus

Probab=96.94  E-value=0.33  Score=45.02  Aligned_cols=35  Identities=17%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy1411         149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEEL  183 (270)
Q Consensus       149 ~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~  183 (270)
                      +.+.++-..+.+++.++.+|+..++.+-..+...+
T Consensus       601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v  635 (961)
T KOG4673|consen  601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV  635 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33456667777777777777777777766655443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.94  E-value=0.097  Score=38.87  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELK  184 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~  184 (270)
                      .+..+......+...+..+......+...+......+.+   +-..++.++..+..|+..+..+-.-|-.+++
T Consensus        60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444444444444444422   3345555555555555555555555544444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.94  E-value=0.14  Score=40.85  Aligned_cols=137  Identities=16%  Similarity=0.217  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Q psy1411         126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVE  205 (270)
Q Consensus       126 ~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~  205 (270)
                      .+..+-...+.+...+..+...+..+.+++..+..-+..+...-+.+...+.....++......+..+....   ..++.
T Consensus        70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA---eekL~  146 (207)
T PF05010_consen   70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA---EEKLE  146 (207)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            333333334444455555555666667777777777777777778888888888888888887777776642   23444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q psy1411         206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA  268 (270)
Q Consensus       206 ~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~  268 (270)
                      .....+..+..   .+...+..+...+.+.+-.+..++..+..-......+..-+|.+++.++
T Consensus       147 ~ANeei~~v~~---~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~  206 (207)
T PF05010_consen  147 KANEEIAQVRS---KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG  206 (207)
T ss_pred             HHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44444444433   4455666677788888888888888888888888888888888888764

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.92  E-value=0.13  Score=40.10  Aligned_cols=98  Identities=14%  Similarity=0.175  Sum_probs=43.3

Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhH
Q psy1411         114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL  193 (270)
Q Consensus       114 ~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~  193 (270)
                      ..++.....+...|..+...........+.+.+.+.++......+...+...+.-+-.-+.-+.+-...+..+..-+.++
T Consensus        91 rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy  170 (193)
T PF14662_consen   91 RQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEY  170 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33333333333333333333333333334444444444444444444444444444444444444444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy1411         194 EVSEEKANQRVEEYKRQI  211 (270)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~  211 (270)
                      ......+...+..+++.+
T Consensus       171 ~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  171 RSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555554444444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.90  E-value=0.27  Score=43.37  Aligned_cols=60  Identities=15%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEAS  103 (270)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e  103 (270)
                      +..+..+......+.........++.++..+...+..++..+-.....+..+...|..+.
T Consensus        41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~  100 (420)
T COG4942          41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN  100 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence            333434444444444444444444444444444444444444444433333333333333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.82  E-value=0.43  Score=44.49  Aligned_cols=79  Identities=16%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             hHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1411         169 VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELG  247 (270)
Q Consensus       169 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~  247 (270)
                      ...+..++..+......+...+.....+-..+...+..+...+..+..........+..+...-...+..+..+...++
T Consensus       346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~  424 (560)
T PF06160_consen  346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR  424 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443333333444444444444444444444444444444333333333333333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.77  E-value=0.031  Score=53.64  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy1411         230 KTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE  266 (270)
Q Consensus       230 ~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~  266 (270)
                      ..+..++..+..++.+..++..-+.....++-..+..
T Consensus       606 ~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~  642 (722)
T PF05557_consen  606 KEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYS  642 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666666666666555555544443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4643|consensus

Probab=96.76  E-value=0.59  Score=45.29  Aligned_cols=49  Identities=24%  Similarity=0.230  Sum_probs=22.7

Q ss_pred             hHHHHHhHHHHHHH-------HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411         147 KSDEVSRKLAFVED-------ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV  195 (270)
Q Consensus       147 ~~~e~~~~~~~l~~-------~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~  195 (270)
                      .|++...+.-.++.       ++..+++++..+..+...++..-..+..+++.+..
T Consensus       395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~  450 (1195)
T KOG4643|consen  395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE  450 (1195)
T ss_pred             hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45554444433333       34444445554444444444444444444444433

>KOG0976|consensus

Probab=96.76  E-value=0.52  Score=44.56  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411         230 KTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA  265 (270)
Q Consensus       230 ~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~  265 (270)
                      ..+..+++.....+..++.+..-.+....++|...+
T Consensus       365 ~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  365 MDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.72  E-value=0.92  Score=46.87  Aligned_cols=31  Identities=6%  Similarity=0.063  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHH
Q psy1411           4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANL   34 (270)
Q Consensus         4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~   34 (270)
                      |..+|..|..++..+......+...+..+..
T Consensus       747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~  777 (1353)
T TIGR02680       747 LDARLAAVDDELAELARELRALGARQRALAD  777 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.66  E-value=0.17  Score=37.73  Aligned_cols=18  Identities=33%  Similarity=0.543  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy1411          72 AALNRKVQMIEEDLEKSE   89 (270)
Q Consensus        72 ~~l~~r~~~le~el~~~~   89 (270)
                      +++..++..++.++....
T Consensus        20 dsle~~v~~LEreLe~~q   37 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQ   37 (140)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            333333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG4673|consensus

Probab=96.65  E-value=0.57  Score=43.53  Aligned_cols=98  Identities=15%  Similarity=0.236  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLK-SLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK  237 (270)
Q Consensus       159 ~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e  237 (270)
                      ...+.++..++..++.+...++...+.+...+. .-....+.+......|-..+..+...+...+..+.   ..-.-++.
T Consensus       536 ~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aa---rrEd~~R~  612 (961)
T KOG4673|consen  536 KDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAA---RREDMFRG  612 (961)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            333444445555555555555555555555442 22223334444555555555555554444333222   22334466


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHH
Q psy1411         238 EVDRLEDELGLNKDRYKSLADE  259 (270)
Q Consensus       238 ~~~~le~~l~~~~~~~~~~~~e  259 (270)
                      .+..|..+++..+.+...+..+
T Consensus       613 Ei~~LqrRlqaaE~R~eel~q~  634 (961)
T KOG4673|consen  613 EIEDLQRRLQAAERRCEELIQQ  634 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666666666666655443

>KOG0612|consensus

Probab=96.63  E-value=0.83  Score=45.27  Aligned_cols=10  Identities=10%  Similarity=0.228  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q psy1411         207 YKRQIKQLAV  216 (270)
Q Consensus       207 ~~~~~~~l~~  216 (270)
                      +.....-+..
T Consensus       726 i~~e~e~L~~  735 (1317)
T KOG0612|consen  726 IEAELEYLSN  735 (1317)
T ss_pred             HHHHHHHHhh
Confidence            3333333333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=96.61  E-value=0.34  Score=40.55  Aligned_cols=13  Identities=15%  Similarity=0.284  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHH
Q psy1411          77 KVQMIEEDLEKSE   89 (270)
Q Consensus        77 r~~~le~el~~~~   89 (270)
                      +...+...+..+.
T Consensus        88 ~a~~L~~~i~~l~  100 (264)
T PF06008_consen   88 RAQDLEQFIQNLQ  100 (264)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.59  E-value=0.35  Score=40.39  Aligned_cols=227  Identities=16%  Similarity=0.180  Sum_probs=108.7

Q ss_pred             HhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1411          36 ADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKV  115 (270)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~  115 (270)
                      +.....++..+.....-+...+..-......++.++.+...|+...-.+.+.....-..+.-.+......|--+.   ..
T Consensus        58 i~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lq---dk  134 (305)
T PF14915_consen   58 IFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQ---DK  134 (305)
T ss_pred             HHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHH---HH
Confidence            334455555555555555566655555556666666666666665555555444443333333333333332222   11


Q ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411         116 LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV  195 (270)
Q Consensus       116 l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~  195 (270)
                      +...+..+.+.-+.+..+|..+...+..+..+++...--+..-.--+..+.+.+..+..++.+++.-...-...+..+-.
T Consensus       135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~  214 (305)
T PF14915_consen  135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG  214 (305)
T ss_pred             hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            12222222333333333333333333333333332222222222223333444444444555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHH
Q psy1411         196 SEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELG--------LNKDRYKSLADEMDSTFA  265 (270)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~--------~~~~~~~~~~~eld~~~~  265 (270)
                      ..+-+..++..+...-.-+.+++..+.......+..+..++.....+-..++        -++.+-..+-.+++++..
T Consensus       215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkE  292 (305)
T PF14915_consen  215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKE  292 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5555666666666666677777777777766666666666655533333322        234444444455555444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.54  E-value=0.27  Score=38.42  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=37.2

Q ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEA  223 (270)
Q Consensus       144 ~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  223 (270)
                      ++++...+...+..+..+...+....+.+..++..|......+...+-.++.-.-.-..........+..+..-+.+...
T Consensus        93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~  172 (193)
T PF14662_consen   93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRS  172 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33333333333344444444444444444444444444444444444333332222222233333333333333333333


Q ss_pred             HHHHHHHHHHHHHHH
Q psy1411         224 RAEFAEKTVKKLQKE  238 (270)
Q Consensus       224 ~~~~~e~~~~~l~e~  238 (270)
                      -...+..++..|.+.
T Consensus       173 ~teeLR~e~s~LEeq  187 (193)
T PF14662_consen  173 ITEELRLEKSRLEEQ  187 (193)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333343444444333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.46  E-value=0.32  Score=38.56  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         198 EKANQRVEEYKRQIKQLAVKLKEA  221 (270)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~~~  221 (270)
                      ..+......+...+..+...+.+.
T Consensus       167 ~~~~~~~~~l~~ei~~L~~klkEK  190 (194)
T PF15619_consen  167 KEAQEEVKSLQEEIQRLNQKLKEK  190 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=96.41  E-value=0.33  Score=38.00  Aligned_cols=168  Identities=15%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVE-VDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM   80 (270)
Q Consensus         2 ~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~   80 (270)
                      -.-...|..++-..-.+...+..+...+...+.-...+. -++..++-....+...+.+-...+..+...+...-.-+..
T Consensus         2 ~~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h   81 (177)
T PF13870_consen    2 RQKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH   81 (177)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555554444455555555555554444333332 3555555555555555555444444444444333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-----hHhhhhHHHHHhHH
Q psy1411          81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLA-----EDADAKSDEVSRKL  155 (270)
Q Consensus        81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~-----~~~~~~~~e~~~~~  155 (270)
                      +...+..+..       ....+...+......+..+...+..+....+.+......++...     ..+-.-|......+
T Consensus        82 ~keKl~~~~~-------~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~  154 (177)
T PF13870_consen   82 VKEKLHFLSE-------ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEV  154 (177)
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence            3333333333       33334444444444444444444444444444444444333322     22222344445555


Q ss_pred             HHHHHHHHHHHHhhHhHHHHH
Q psy1411         156 AFVEDELEVAEDRVKSGDAKI  176 (270)
Q Consensus       156 ~~l~~~l~~~e~r~~~~~~~~  176 (270)
                      ..+...+..|..++..++.++
T Consensus       155 ~~l~~~i~~l~rk~~~l~~~i  175 (177)
T PF13870_consen  155 EELRKEIKELERKVEILEMRI  175 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            666666777777666666554

>TIGR00634 recN DNA repair protein RecN

Probab=96.35  E-value=0.9  Score=42.43  Aligned_cols=104  Identities=21%  Similarity=0.258  Sum_probs=46.8

Q ss_pred             hHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         142 EDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA  221 (270)
Q Consensus       142 ~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (270)
                      ......+.++...+..+..++...-..++--..++..++.++..+..-...+...++.+-.....+...+..+..    .
T Consensus       269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~----~  344 (563)
T TIGR00634       269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD----S  344 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC----C
Confidence            333444444444555555555555555444445555555555555554444443444444434443333333222    2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy1411         222 EARAEFAEKTVKKLQKEVDRLEDELGLN  249 (270)
Q Consensus       222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~  249 (270)
                      ...+..++.++..+...+..+-..+...
T Consensus       345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~  372 (563)
T TIGR00634       345 DESLEALEEEVDKLEEELDKAAVALSLI  372 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233344444444444444444444433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.28  E-value=1.2  Score=43.19  Aligned_cols=43  Identities=12%  Similarity=0.117  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy1411         126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDR  168 (270)
Q Consensus       126 ~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r  168 (270)
                      .+..++.++..+...+..+...|...+-.+..+...+..+...
T Consensus       289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~  331 (754)
T TIGR01005       289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQ  331 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433333444444444444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0999|consensus

Probab=96.28  E-value=0.84  Score=41.38  Aligned_cols=42  Identities=19%  Similarity=0.037  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHH
Q psy1411          90 ERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLT  131 (270)
Q Consensus        90 ~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le  131 (270)
                      .-+.+..++-...-..+-+++.+++.+.+.+.....+.+.+.
T Consensus        93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~  134 (772)
T KOG0999|consen   93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLE  134 (772)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444555555555555555554444444443

>KOG0976|consensus

Probab=96.24  E-value=1.1  Score=42.45  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411          69 SEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAAD  107 (270)
Q Consensus        69 ~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~  107 (270)
                      .....|..+...|.+++...+..+...+..++.......
T Consensus       270 E~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t  308 (1265)
T KOG0976|consen  270 EKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRT  308 (1265)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444555555555555555555554444433

>KOG0946|consensus

Probab=96.13  E-value=1.3  Score=42.10  Aligned_cols=48  Identities=13%  Similarity=0.149  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          46 TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG   93 (270)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~   93 (270)
                      +.-++..+.+...++.-....+..++........++.+.++.+..+++
T Consensus       669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333333334444444444444444444444444444444444

>PRK11281 hypothetical protein; Provisional

Probab=96.08  E-value=1.8  Score=43.46  Aligned_cols=10  Identities=10%  Similarity=0.468  Sum_probs=5.2

Q ss_pred             HHHHHHHHHH
Q psy1411           4 IKKKMQAMKM   13 (270)
Q Consensus         4 i~~kl~~l~~   13 (270)
                      |+++|+.+.+
T Consensus        41 iq~~l~~~~~   50 (1113)
T PRK11281         41 VQAQLDALNK   50 (1113)
T ss_pred             HHHHHHHhhc
Confidence            5555555543

>KOG0980|consensus

Probab=96.01  E-value=1.5  Score=41.96  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             HHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy1411         100 AEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL  179 (270)
Q Consensus       100 ~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l  179 (270)
                      -..+.....+......+......+-...++.-.++.-......+.++...++...+..+.+....|+...+.....+..+
T Consensus       420 l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l  499 (980)
T KOG0980|consen  420 LAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL  499 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33333333333344444444444445555555555555555556666666666677777777777777777666666666


Q ss_pred             HHHHHHHhhhHhhHHHH
Q psy1411         180 EEELKVVGNSLKSLEVS  196 (270)
Q Consensus       180 ~~~~~~~~~~l~~~~~~  196 (270)
                      ..++.-+..+++.+...
T Consensus       500 ~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  500 RQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666666665554

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.97  E-value=0.9  Score=38.92  Aligned_cols=69  Identities=17%  Similarity=0.338  Sum_probs=28.4

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy1411         189 SLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLA  257 (270)
Q Consensus       189 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~  257 (270)
                      .+..+......+...+..|.+.+..+...+.....-......++......+..++.+-..+..++....
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n  271 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSN  271 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333334444444444444444444444444444444444444444444444444444433333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.83  E-value=0.0023  Score=61.14  Aligned_cols=61  Identities=21%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL   99 (270)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l   99 (270)
                      +...+..++..+..+...++....++..+..++..+..++..+..+...+......+.+.+
T Consensus       361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~  421 (713)
T PF05622_consen  361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN  421 (713)
T ss_dssp             -------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666666666666666666666665555555444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0249|consensus

Probab=95.69  E-value=1.9  Score=40.49  Aligned_cols=90  Identities=18%  Similarity=0.222  Sum_probs=45.8

Q ss_pred             HHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy1411         101 EASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE  180 (270)
Q Consensus       101 ~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~  180 (270)
                      .++..++.-+..+-..+.+...++..++.++..+-..-   .  -..+++++.++..--..+.-.+.+......++..+.
T Consensus        95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~---r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~  169 (916)
T KOG0249|consen   95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSL---R--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLE  169 (916)
T ss_pred             HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHH---h--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            33344444444555555666666666666666554211   1  223444444444444444444555555555555666


Q ss_pred             HHHHHHhhhHhhHHH
Q psy1411         181 EELKVVGNSLKSLEV  195 (270)
Q Consensus       181 ~~~~~~~~~l~~~~~  195 (270)
                      ..++.++.+|..+..
T Consensus       170 ~~~qe~naeL~rarq  184 (916)
T KOG0249|consen  170 EQLEELNAELQRARQ  184 (916)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666555444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.57  E-value=0.0033  Score=60.17  Aligned_cols=19  Identities=16%  Similarity=-0.101  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q psy1411         247 GLNKDRYKSLADEMDSTFA  265 (270)
Q Consensus       247 ~~~~~~~~~~~~eld~~~~  265 (270)
                      .+++.+..-+..+++.+.+
T Consensus       402 ~RLerq~~L~~kE~d~LR~  420 (722)
T PF05557_consen  402 RRLERQKALATKERDYLRA  420 (722)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=95.54  E-value=1.1  Score=36.97  Aligned_cols=81  Identities=31%  Similarity=0.369  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411          56 DLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK  135 (270)
Q Consensus        56 ~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~  135 (270)
                      .+..+......++.+...|..+...++.....+..........-..+...+.++...+..+......-..+...+...+.
T Consensus        34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~  113 (246)
T PF00769_consen   34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE  113 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333344444444333


Q ss_pred             H
Q psy1411         136 E  136 (270)
Q Consensus       136 ~  136 (270)
                      .
T Consensus       114 ~  114 (246)
T PF00769_consen  114 E  114 (246)
T ss_dssp             H
T ss_pred             H
Confidence            3

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.44  E-value=0.004  Score=59.57  Aligned_cols=74  Identities=31%  Similarity=0.377  Sum_probs=0.0

Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV  239 (270)
Q Consensus       162 l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~  239 (270)
                      +.....++..++.+...+..+...+..++.....    +...+..|...+..+...+.......+.+...+..+.+.+
T Consensus       327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~----~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~  400 (713)
T PF05622_consen  327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARA----LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKL  400 (713)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455555555555555555555555555333    3333444555555555555444444444444444444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0946|consensus

Probab=95.43  E-value=2.5  Score=40.25  Aligned_cols=19  Identities=16%  Similarity=0.326  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHhhHhH
Q psy1411         154 KLAFVEDELEVAEDRVKSG  172 (270)
Q Consensus       154 ~~~~l~~~l~~~e~r~~~~  172 (270)
                      ++..+..++...++.+..+
T Consensus       807 ~l~~~q~e~~~~keq~~t~  825 (970)
T KOG0946|consen  807 RLQELQSELTQLKEQIQTL  825 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>KOG0612|consensus

Probab=95.35  E-value=3.4  Score=41.24  Aligned_cols=20  Identities=30%  Similarity=0.250  Sum_probs=7.7

Q ss_pred             HhHHHHHHHHHHHHHHHhhh
Q psy1411         170 KSGDAKIMELEEELKVVGNS  189 (270)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~  189 (270)
                      ..+..++..|++........
T Consensus       626 ~~l~~~i~sL~~~~~~~~~~  645 (1317)
T KOG0612|consen  626 AELKEEISSLEETLKAGKKE  645 (1317)
T ss_pred             HHHHhHHHHHHHHHHhhhhH
Confidence            33333333333333333333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.26  E-value=1.7  Score=37.25  Aligned_cols=107  Identities=15%  Similarity=0.175  Sum_probs=59.2

Q ss_pred             HHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1411          35 RADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE----EDLEKSEERSGTATAKLAEASQAADEAN  110 (270)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le----~el~~~~~~l~~~~~~l~~~e~~~~~~~  110 (270)
                      .+..+..+...+......+..-+..+......+..++..+......++    .++..+...+......+......+.++.
T Consensus       152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~  231 (312)
T smart00787      152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELE  231 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444555555555555555555544443    3556666666666666666666666666


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy1411         111 RMCKVLENRSQQDEERMDQLTNQLKEARLLA  141 (270)
Q Consensus       111 ~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~  141 (270)
                      .++..+...+......+..+...+.++....
T Consensus       232 ~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      232 EELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666665555444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.24  E-value=0.55  Score=37.34  Aligned_cols=62  Identities=16%  Similarity=0.160  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q psy1411          89 EERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE  150 (270)
Q Consensus        89 ~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e  150 (270)
                      ...+..+...+..+...+..+...+......+..+.+++..+...+..+...+..+..+..+
T Consensus       115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~  176 (194)
T PF08614_consen  115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE  176 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444444555544444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.16  E-value=2.6  Score=38.72  Aligned_cols=28  Identities=18%  Similarity=0.194  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          76 RKVQMIEEDLEKSEERSGTATAKLAEAS  103 (270)
Q Consensus        76 ~r~~~le~el~~~~~~l~~~~~~l~~~e  103 (270)
                      .++..+...+..++.++....+.+..+.
T Consensus       204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~  231 (498)
T TIGR03007       204 SEISEAQEELEAARLELNEAIAQRDALK  231 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.05  E-value=2.8  Score=38.51  Aligned_cols=23  Identities=9%  Similarity=0.163  Sum_probs=9.1

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHh
Q psy1411         146 AKSDEVSRKLAFVEDELEVAEDR  168 (270)
Q Consensus       146 ~~~~e~~~~~~~l~~~l~~~e~r  168 (270)
                      ..|.+-+-.+..+..++..+...
T Consensus       268 ~~y~~~hP~v~~l~~qi~~l~~~  290 (498)
T TIGR03007       268 LRYTDKHPDVIATKREIAQLEEQ  290 (498)
T ss_pred             HHhcccChHHHHHHHHHHHHHHH
Confidence            33333333344444444444333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0995|consensus

Probab=94.90  E-value=3  Score=38.17  Aligned_cols=30  Identities=7%  Similarity=0.217  Sum_probs=12.5

Q ss_pred             HHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411         166 EDRVKSGDAKIMELEEELKVVGNSLKSLEV  195 (270)
Q Consensus       166 e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~  195 (270)
                      ...+-.+......|++.+..+..-......
T Consensus       431 ~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~  460 (581)
T KOG0995|consen  431 SEELHEAENELETLQEHFSNKASTIEEKIQ  460 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444433333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.89  E-value=2.1  Score=36.31  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=9.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHH
Q psy1411         241 RLEDELGLNKDRYKSLADEMDSTF  264 (270)
Q Consensus       241 ~le~~l~~~~~~~~~~~~eld~~~  264 (270)
                      .+..++..+.-++..+..-+....
T Consensus       273 ~L~aEL~elqdkY~E~~~mL~EaQ  296 (306)
T PF04849_consen  273 QLQAELQELQDKYAECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444333333333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=94.82  E-value=1.9  Score=35.61  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         156 AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL  235 (270)
Q Consensus       156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l  235 (270)
                      ..|...+..++.....++.....+......+..........-..+...+..+...+..+.............+...+...
T Consensus        36 ~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a  115 (246)
T PF00769_consen   36 EELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA  115 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444443333332222222333334444444444443333333333333333333


Q ss_pred             H
Q psy1411         236 Q  236 (270)
Q Consensus       236 ~  236 (270)
                      +
T Consensus       116 r  116 (246)
T PF00769_consen  116 R  116 (246)
T ss_dssp             H
T ss_pred             H
Confidence            3

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.81  E-value=2.3  Score=36.39  Aligned_cols=37  Identities=8%  Similarity=0.146  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHh
Q psy1411           3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV   39 (270)
Q Consensus         3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~   39 (270)
                      .+.+.|+..+.|.+....-++.++.....+...+..+
T Consensus        13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el   49 (319)
T PF09789_consen   13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYREL   49 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567888888888888777777776666665554433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.75  E-value=0.79  Score=36.44  Aligned_cols=99  Identities=22%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             hHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         142 EDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA  221 (270)
Q Consensus       142 ~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (270)
                      ..+.+...++..++..+...+...+..+......+..+...+..+...+..+...       +......+..+..++..+
T Consensus        84 ael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~-------l~ek~k~~e~l~DE~~~L  156 (194)
T PF08614_consen   84 AELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE-------LKEKNKANEILQDELQAL  156 (194)
T ss_dssp             ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444444444433333332       233333344444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1411         222 EARAEFAEKTVKKLQKEVDRLEDELG  247 (270)
Q Consensus       222 ~~~~~~~e~~~~~l~e~~~~le~~l~  247 (270)
                      .-.+..++..+..+......|-.++-
T Consensus       157 ~l~~~~~e~k~~~l~~En~~Lv~Rwm  182 (194)
T PF08614_consen  157 QLQLNMLEEKLRKLEEENRELVERWM  182 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0963|consensus

Probab=94.73  E-value=3.5  Score=38.13  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=42.1

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH----HHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhH
Q psy1411         115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE----VSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSL  190 (270)
Q Consensus       115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e----~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l  190 (270)
                      .+..++..++..+..+...+......+......|++    ....+..+-.++++...++..++.+...|..++...+...
T Consensus       193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~  272 (629)
T KOG0963|consen  193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK  272 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            334444445555555544444444444444444222    2223445556666677777777777777776666666555


Q ss_pred             hhH
Q psy1411         191 KSL  193 (270)
Q Consensus       191 ~~~  193 (270)
                      ...
T Consensus       273 ~~~  275 (629)
T KOG0963|consen  273 KLA  275 (629)
T ss_pred             hhc
Confidence            443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.62  E-value=2.6  Score=36.09  Aligned_cols=93  Identities=12%  Similarity=0.158  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHH
Q psy1411          48 KNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSE--------------ERSGTATAKLAEASQAADEANRMC  113 (270)
Q Consensus        48 ~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~--------------~~l~~~~~~l~~~e~~~~~~~~~~  113 (270)
                      +++.-+...+...+.+.+.+..-++.+..+...+......+.              ..-..+..-+...+.....+..++
T Consensus         9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev   88 (319)
T PF09789_consen    9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV   88 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555554443333              122233344445555555555566


Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy1411         114 KVLENRSQQDEERMDQLTNQLKEARLL  140 (270)
Q Consensus       114 ~~l~~~~~~~e~~~~~le~~l~~~~~~  140 (270)
                      ..|..++.++...+--++..+...+..
T Consensus        89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~  115 (319)
T PF09789_consen   89 EELRQKLNEAQGDIKLLREKLARQRVG  115 (319)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence            666666666666666666666544433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.47  E-value=3.4  Score=36.82  Aligned_cols=9  Identities=0%  Similarity=-0.082  Sum_probs=3.3

Q ss_pred             HHHHHHhHh
Q psy1411           8 MQAMKMEKD   16 (270)
Q Consensus         8 l~~l~~e~~   16 (270)
                      +..+..++.
T Consensus        83 l~~l~~~~~   91 (423)
T TIGR01843        83 AAELESQVL   91 (423)
T ss_pred             HHHHHHHHH
Confidence            333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=94.45  E-value=2.2  Score=34.59  Aligned_cols=48  Identities=19%  Similarity=0.183  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          20 DKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAA   67 (270)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   67 (270)
                      +...-+...+.+++..+..+...+.........+..++..+...+...
T Consensus        23 DP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~   70 (221)
T PF04012_consen   23 DPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW   70 (221)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555554444444444444444444444444443333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.38  E-value=5.2  Score=38.64  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411         115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK  191 (270)
Q Consensus       115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~  191 (270)
                      .+..++..+......++..+......+..+...+.+....+..+..++..+......++.++..+.+....+...+.
T Consensus       593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~  669 (769)
T PF05911_consen  593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK  669 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33444444444444444444444444444444444444444444444444444444444444444333333333333

The function of this family is unknown.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.22  E-value=3.2  Score=35.60  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy1411          71 VAALNRKVQMIEEDLE   86 (270)
Q Consensus        71 ~~~l~~r~~~le~el~   86 (270)
                      +..+..+...+..++.
T Consensus       174 ~~~l~~~~~~L~~e~~  189 (312)
T smart00787      174 KPKLRDRKDALEEELR  189 (312)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=93.96  E-value=2.2  Score=32.69  Aligned_cols=61  Identities=20%  Similarity=0.351  Sum_probs=24.8

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhH
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSG  172 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~  172 (270)
                      .+..+..+...+....+.++..+..+...+..++.-.....--+..+.+++..+...++.+
T Consensus        92 ~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~  152 (159)
T PF05384_consen   92 RLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA  152 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3333333444444444444444443333333333333333333344444444444444433

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>KOG0963|consensus

Probab=93.90  E-value=5.3  Score=36.98  Aligned_cols=45  Identities=9%  Similarity=0.154  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy1411          75 NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENR  119 (270)
Q Consensus        75 ~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~  119 (270)
                      ..+...+.+....+..++..+...+..+...+......+..+...
T Consensus       181 ~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~  225 (629)
T KOG0963|consen  181 AEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK  225 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence            334444444455555555555555555555555544444444443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=93.84  E-value=4.2  Score=35.61  Aligned_cols=124  Identities=10%  Similarity=0.215  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Q psy1411         128 DQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEY  207 (270)
Q Consensus       128 ~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~  207 (270)
                      ...+.-+.++..........+++....+..+..++...-+++..-+.-   +..++..+-.++.........+..+....
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y~~~  292 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEVQEKYKQA  292 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666777777777777778887878887777776666655554443   44466666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhHHHHHH
Q psy1411         208 KRQIKQLAVKLKEAEARAEFAEK-------------TVKKLQKEVDRLEDELGLNKDRYK  254 (270)
Q Consensus       208 ~~~~~~l~~~~~~~~~~~~~~e~-------------~~~~l~e~~~~le~~l~~~~~~~~  254 (270)
                      ...+..+...+..+...++....             -+..+...+.++..++....++.+
T Consensus       293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG  352 (359)
T PF10498_consen  293 SEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG  352 (359)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            66666666666666666665552             334455555666666655555543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK10869 recombination and repair protein; Provisional

Probab=93.76  E-value=5.9  Score=36.98  Aligned_cols=117  Identities=22%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA  225 (270)
Q Consensus       146 ~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  225 (270)
                      ..+.++...+..+...+...-..+.--..++..+++++..+..-...+...++++-...+.+...+..+.    .....+
T Consensus       268 ~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~----~~e~~l  343 (553)
T PRK10869        268 DMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD----DQEDDL  343 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CCHHHH
Confidence            3334444444444444444444444444455556666655555555444444443333333333333322    233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHH
Q psy1411         226 EFAEKTVKKLQKEVDRLEDELGLNKDR-YKSLADEMDSTFAE  266 (270)
Q Consensus       226 ~~~e~~~~~l~e~~~~le~~l~~~~~~-~~~~~~eld~~~~~  266 (270)
                      ..++.++..+...+..+-..++..+.+ ...+...+...+.+
T Consensus       344 ~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~  385 (553)
T PRK10869        344 ETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHE  385 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555554444444444443 23333344433333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.71  E-value=3.6  Score=34.37  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1411          45 TTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL  116 (270)
Q Consensus        45 ~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l  116 (270)
                      ..+..+..++..+..+...+..+...+.....+...+......+-.+...+...+..+...+..+-..+..+
T Consensus        42 ~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l  113 (264)
T PF06008_consen   42 PQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL  113 (264)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333344444444444444444444444444444444444444444444444444443333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.63  E-value=3.1  Score=33.30  Aligned_cols=41  Identities=17%  Similarity=0.170  Sum_probs=21.2

Q ss_pred             HHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411         151 VSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK  191 (270)
Q Consensus       151 ~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~  191 (270)
                      +..++..++..+..+.-..+.+..+...+..+++.+...+.
T Consensus        91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~  131 (201)
T PF13851_consen   91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE  131 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555554444

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=93.57  E-value=2.6  Score=32.27  Aligned_cols=125  Identities=15%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             HhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         141 AEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS-EEKANQRVEEYKRQIKQLAVKLK  219 (270)
Q Consensus       141 ~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  219 (270)
                      .+.+..+++.+.+.+..+...+...-..++.++..-...-.++..+...+..+... .-.+-..-..+.-.+..+..+-.
T Consensus        22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~  101 (159)
T PF05384_consen   22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK  101 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444555555555555555555555555555555555433221 11122223344444444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411         220 EAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA  265 (270)
Q Consensus       220 ~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~  265 (270)
                      .++.+-+.++..+..+...+...+.-+.+..+-..-+...+.+...
T Consensus       102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~  147 (159)
T PF05384_consen  102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSE  147 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            5555555555555555555555555555555555555555544443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=93.54  E-value=3.6  Score=33.85  Aligned_cols=42  Identities=17%  Similarity=0.235  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411         154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV  195 (270)
Q Consensus       154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~  195 (270)
                      ++..++..+.....+.+-...+...+..++..+...+..+..
T Consensus       165 ~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~  206 (240)
T PF12795_consen  165 QIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQN  206 (240)
T ss_pred             HHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444443

>KOG0999|consensus

Probab=93.47  E-value=6  Score=36.17  Aligned_cols=184  Identities=15%  Similarity=0.223  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHhHhhHH-hHHHHHHHHH------HHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy1411           2 DAIKKKMQAMKMEKDSAM-DKADTCEGQA------KDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAE------   68 (270)
Q Consensus         2 ~~i~~kl~~l~~e~~~~~-~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e------   68 (270)
                      +.++..|..|..+++... +.+.+++-.+      ..+.+++..++..++.++.++......+-..........      
T Consensus        11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~   90 (772)
T KOG0999|consen   11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEER   90 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            445666677776666653 2333333322      234446666666677776666666555544443322210      


Q ss_pred             --HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy1411          69 --SEV-------AALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARL  139 (270)
Q Consensus        69 --~~~-------~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~  139 (270)
                        .-+       ..+..+|-.++.++..++..+...++..+.+....       ..+......++...-.++..+++..+
T Consensus        91 EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~-------sd~~e~~~~~E~qR~rlr~elKe~Kf  163 (772)
T KOG0999|consen   91 EESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVH-------SDLKESNAAVEDQRRRLRDELKEYKF  163 (772)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhcchhhHHHHHHHHHHHHHHHH
Confidence              111       12223333344444444444333333333333322       23333333344444444444444444


Q ss_pred             HHhHhhhhHHHHHhHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhh
Q psy1411         140 LAEDADAKSDEVSRKL---AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKS  192 (270)
Q Consensus       140 ~~~~~~~~~~e~~~~~---~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~  192 (270)
                      .-..+=..|.++....   +..-+.|....=..+.+.-.++.|++...-++..+..
T Consensus       164 RE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee  219 (772)
T KOG0999|consen  164 REARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE  219 (772)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444433332   3333333334444555555666666666666655544

>KOG1853|consensus

Probab=93.45  E-value=3.6  Score=33.59  Aligned_cols=140  Identities=21%  Similarity=0.197  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHH
Q psy1411          76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKL  155 (270)
Q Consensus        76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~  155 (270)
                      ....++.+++..+.+--.++.+.          ++.++..++.+...++.....+...+.......+.   .+-...+..
T Consensus        27 q~f~~~reEl~EFQegSrE~Eae----------lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~   93 (333)
T KOG1853|consen   27 QHFLQMREELNEFQEGSREIEAE----------LESQLDQLETRNRDLETRNQRLTTEQERNKEKQED---QRVQFYQQE   93 (333)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            33444555555555544444422          22344444444444444444444444322333222   233335566


Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         156 AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFA  228 (270)
Q Consensus       156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  228 (270)
                      ..|+.++.-.-.-.+.+...|.+|+..-+.+...-..-....+++..++....+....++.++.+-+.-+..+
T Consensus        94 s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv  166 (333)
T KOG1853|consen   94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV  166 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7778888888888888888888888777777766665556677777788888888888888777665555443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.33  E-value=3.9  Score=35.17  Aligned_cols=9  Identities=33%  Similarity=0.346  Sum_probs=0.0

Q ss_pred             hHhhHHHHH
Q psy1411          39 VEVDLDTTK   47 (270)
Q Consensus        39 ~~~~~~~~~   47 (270)
                      +..+.+.+.
T Consensus        21 ~~~E~~~Y~   29 (314)
T PF04111_consen   21 AEKERDTYQ   29 (314)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0978|consensus

Probab=93.08  E-value=8.2  Score=36.64  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK  237 (270)
Q Consensus       158 l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e  237 (270)
                      +....+-...++..++.+...+......+..++..+....+.......++...+..+...+......+..+...+..+..
T Consensus       515 l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~  594 (698)
T KOG0978|consen  515 LKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELEL  594 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333433333333344444444444444444444433333333333333333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.98  E-value=8.7  Score=36.65  Aligned_cols=11  Identities=27%  Similarity=0.673  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q psy1411         256 LADEMDSTFAE  266 (270)
Q Consensus       256 ~~~eld~~~~~  266 (270)
                      +...+..+.+.
T Consensus       507 le~~~~~~f~~  517 (650)
T TIGR03185       507 LEEEITKSFKK  517 (650)
T ss_pred             HHHHHHHHHHH
Confidence            33334444333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=92.96  E-value=3.6  Score=32.13  Aligned_cols=80  Identities=16%  Similarity=0.222  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q psy1411          64 LAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAED  143 (270)
Q Consensus        64 ~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~  143 (270)
                      +..+.-+...+..++..=..++..+..........+.-....+..+......+...+......+..++..+..+......
T Consensus        44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k  123 (177)
T PF13870_consen   44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK  123 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555555555555555554444433333

>KOG0978|consensus

Probab=92.74  E-value=9.2  Score=36.33  Aligned_cols=120  Identities=20%  Similarity=0.234  Sum_probs=78.6

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA  225 (270)
Q Consensus       146 ~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  225 (270)
                      ..+..+......+...+..+..-...+...+..++++...+......+......+...+..+......+...+..+...+
T Consensus       496 q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~  575 (698)
T KOG0978|consen  496 QKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIEL  575 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555666666666666666666777777777777777666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411         226 EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA  265 (270)
Q Consensus       226 ~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~  265 (270)
                      +.....+..++..+..+...+.-..-+..+++.++..+.-
T Consensus       576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~  615 (698)
T KOG0978|consen  576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR  615 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777777777777776666666666666655443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.70  E-value=6.5  Score=34.47  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411          86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA  165 (270)
Q Consensus        86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~  165 (270)
                      ......++....-...+...+......+..+...+...-+.+..-+..++   ..+..+-..|..+..++..+.......
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~  292 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQA  292 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555666665555555555555555553   444444445544444444444444444


Q ss_pred             HHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411         166 EDRVKSGDAKIMELEEELKVVGNSLK  191 (270)
Q Consensus       166 e~r~~~~~~~~~~l~~~~~~~~~~l~  191 (270)
                      ...+......+..+.++++.+...+.
T Consensus       293 s~~V~~~t~~L~~IseeLe~vK~eme  318 (359)
T PF10498_consen  293 SEGVSERTRELAEISEELEQVKQEME  318 (359)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0804|consensus

Probab=92.69  E-value=7  Score=34.80  Aligned_cols=102  Identities=18%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             HHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         140 LAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLK  219 (270)
Q Consensus       140 ~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (270)
                      .+......|..+......+..+..+++..-..++.+..++...+.....++......-..+....+.....+..++...+
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~  427 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK  427 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33444445555555566777777777777788888888888888888888877775544455555555555555554433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         220 EAEARAEFAEKTVKKLQKEVDRLED  244 (270)
Q Consensus       220 ~~~~~~~~~e~~~~~l~e~~~~le~  244 (270)
                      +   .....+..+..|++++.++--
T Consensus       428 ~---~~~s~d~~I~dLqEQlrDlmf  449 (493)
T KOG0804|consen  428 E---ALGSKDEKITDLQEQLRDLMF  449 (493)
T ss_pred             H---HHHHHHHHHHHHHHHHHhHhe
Confidence            3   333445666666777666543

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.67  E-value=2.5  Score=29.70  Aligned_cols=61  Identities=11%  Similarity=0.253  Sum_probs=25.5

Q ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         179 LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV  239 (270)
Q Consensus       179 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~  239 (270)
                      +..++..+...+.......+.+....+.+...+..+..+......++..++..+..+...+
T Consensus        14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l   74 (107)
T PF09304_consen   14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333444444444444444444444444444444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.64  E-value=1.9  Score=28.22  Aligned_cols=63  Identities=19%  Similarity=0.233  Sum_probs=35.2

Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411         114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI  176 (270)
Q Consensus       114 ~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~  176 (270)
                      ..|+.++..+-+.+..+...+..++..-..+......+......+..+...|..|+..+=.++
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444445555554444444444444445555556666666677777777776665544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.43  E-value=13  Score=37.13  Aligned_cols=52  Identities=23%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Q psy1411         158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKR  209 (270)
Q Consensus       158 l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  209 (270)
                      +...+..+...+.........+...+......+..+...+.++...+.....
T Consensus       366 l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  417 (908)
T COG0419         366 LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK  417 (908)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444333333344444444444444444444443333333333

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.38  E-value=14  Score=37.47  Aligned_cols=11  Identities=18%  Similarity=0.386  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHH
Q psy1411           3 AIKKKMQAMKM   13 (270)
Q Consensus         3 ~i~~kl~~l~~   13 (270)
                      .|+++|+.+..
T Consensus        27 ~iq~~l~~~~~   37 (1109)
T PRK10929         27 QITQELEQAKA   37 (1109)
T ss_pred             HHHHHHHHhhc
Confidence            35555655543

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.28  E-value=2.9  Score=29.42  Aligned_cols=60  Identities=13%  Similarity=0.224  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411          75 NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL  134 (270)
Q Consensus        75 ~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l  134 (270)
                      ..++..++..++......+++...-+.++.....+.........++..++..+..+...+
T Consensus        15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l   74 (107)
T PF09304_consen   15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444433333333333333334444444444444444444444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.10  E-value=11  Score=35.54  Aligned_cols=49  Identities=22%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          24 TCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVA   72 (270)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~   72 (270)
                      .+...+..+...+..+...++.+...+..+...+.........++.++.
T Consensus       332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444444444444

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=92.02  E-value=5  Score=31.64  Aligned_cols=111  Identities=10%  Similarity=0.188  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          24 TCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEAS  103 (270)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e  103 (270)
                      .++..|..-...+..++.++......+......+......+.-...........+..|..-+......+..+..-...+.
T Consensus        57 aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ  136 (188)
T PF05335_consen   57 AAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ  136 (188)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455554444444444444444444444444444444444444444444444444444443333333


Q ss_pred             HHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411         104 QAADEANRMCKVLENRSQQDEERMDQLTNQL  134 (270)
Q Consensus       104 ~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l  134 (270)
                      .++.+...-+.....+++.+...+...+..|
T Consensus       137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~  167 (188)
T PF05335_consen  137 QELAEKTQLLEAAKRRVEELQRQLQAARADY  167 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.97  E-value=2.2  Score=27.31  Aligned_cols=54  Identities=11%  Similarity=0.154  Sum_probs=34.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411         122 QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK  175 (270)
Q Consensus       122 ~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~  175 (270)
                      -+.-+++.+...-..+.....++....+.+.++...+..+...|.+|+..+-.+
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk   75 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444455555556666667777788888888888888776443

>KOG0979|consensus

Probab=91.87  E-value=14  Score=36.42  Aligned_cols=14  Identities=29%  Similarity=0.245  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHhh
Q psy1411         156 AFVEDELEVAEDRV  169 (270)
Q Consensus       156 ~~l~~~l~~~e~r~  169 (270)
                      ..+...+.....++
T Consensus       293 s~~~~~~~e~~~k~  306 (1072)
T KOG0979|consen  293 SQKQRELNEALAKV  306 (1072)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=91.45  E-value=13  Score=35.10  Aligned_cols=107  Identities=22%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE  238 (270)
Q Consensus       159 ~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~  238 (270)
                      +..+.++.-.+......++.|++........|+......+.+...+......+.........+...+..+...+..+...
T Consensus       253 en~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e  332 (786)
T PF05483_consen  253 ENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEE  332 (786)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333334444444444444444444444444443333433333333333333333334444444444444444444


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy1411         239 VDRLEDELGLNKDRYKSLADEMDSTFA  265 (270)
Q Consensus       239 ~~~le~~l~~~~~~~~~~~~eld~~~~  265 (270)
                      ...--..+.......+..-.++.....
T Consensus       333 Ke~~~Ee~nk~k~~~s~~v~e~qtti~  359 (786)
T PF05483_consen  333 KEAQMEELNKAKAQHSFVVTELQTTIC  359 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.40  E-value=14  Score=35.61  Aligned_cols=10  Identities=10%  Similarity=0.278  Sum_probs=3.5

Q ss_pred             HHHHHHHhhH
Q psy1411         161 ELEVAEDRVK  170 (270)
Q Consensus       161 ~l~~~e~r~~  170 (270)
                      .+..+..+++
T Consensus       647 ~l~~l~~si~  656 (717)
T PF10168_consen  647 QLQDLKASIE  656 (717)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.39  E-value=7.5  Score=32.34  Aligned_cols=61  Identities=8%  Similarity=0.352  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          24 TCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED   84 (270)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~e   84 (270)
                      ..+..+..+......++.+++++...+..+...+.....++......+..++..|..++..
T Consensus        35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~   95 (265)
T COG3883          35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN   95 (265)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444333333333

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.99  E-value=7.3  Score=31.51  Aligned_cols=50  Identities=22%  Similarity=0.199  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411          86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK  135 (270)
Q Consensus        86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~  135 (270)
                      .-+..-+.++...+..++..+.........++.++..+...+..++.+..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~   75 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE   75 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555666666666666666666666666666666666654

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.80  E-value=8.5  Score=31.94  Aligned_cols=64  Identities=16%  Similarity=0.170  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy1411          70 EVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ  133 (270)
Q Consensus        70 ~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~  133 (270)
                      ++..+.+-...|-+.++.++.....+...+..-+..+.-++..+......+..++.++..+...
T Consensus        61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE  124 (307)
T PF10481_consen   61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE  124 (307)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333333333333333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=90.80  E-value=8.2  Score=31.75  Aligned_cols=24  Identities=8%  Similarity=0.317  Sum_probs=8.9

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQLK  135 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~l~  135 (270)
                      .+..+..+...+...+..+...+.
T Consensus       107 ~l~~~~~~p~~aq~~l~~~~~~l~  130 (240)
T PF12795_consen  107 QLIEIQTRPERAQQQLSEARQRLQ  130 (240)
T ss_pred             HHHHHHccHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.59  E-value=8.3  Score=31.50  Aligned_cols=61  Identities=18%  Similarity=0.272  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy1411         206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE  266 (270)
Q Consensus       206 ~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~  266 (270)
                      .|........+.+..+...+..++..+...+............+...+..+..++|....+
T Consensus        43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   43 ELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333444444444444444444444444444444444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.38  E-value=8  Score=30.93  Aligned_cols=9  Identities=11%  Similarity=0.379  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q psy1411          44 DTTKKNLDQ   52 (270)
Q Consensus        44 ~~~~~~~~~   52 (270)
                      .++..++..
T Consensus        30 ksLKeei~e   38 (201)
T PF13851_consen   30 KSLKEEIAE   38 (201)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=90.14  E-value=0.66  Score=39.55  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy1411         156 AFVEDELEVAEDRVKSGDAKIMELEEELK  184 (270)
Q Consensus       156 ~~l~~~l~~~e~r~~~~~~~~~~l~~~~~  184 (270)
                      ..+..++..+...+-...-.+..|+.++.
T Consensus       122 ~~lsTdvsNLksdVSt~aL~ItdLe~RV~  150 (326)
T PF04582_consen  122 SALSTDVSNLKSDVSTQALNITDLESRVK  150 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence            33333333333333333333333333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.07  E-value=5.8  Score=28.85  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=7.9

Q ss_pred             HHHHhhhhhhhHHHHHHHHHHH
Q psy1411         113 CKVLENRSQQDEERMDQLTNQL  134 (270)
Q Consensus       113 ~~~l~~~~~~~e~~~~~le~~l  134 (270)
                      +..+..++..+-.-++.....+
T Consensus        77 l~~l~~ry~t~LellGEK~E~v   98 (120)
T PF12325_consen   77 LEELQQRYQTLLELLGEKSEEV   98 (120)
T ss_pred             HHHHHHHHHHHHHHhcchHHHH
Confidence            3333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=89.99  E-value=7.7  Score=30.16  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=24.8

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhH
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS  148 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~  148 (270)
                      ....+..++..++..+.-++.+|..++..+..+...-
T Consensus        58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er   94 (178)
T PF14073_consen   58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKER   94 (178)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556667777777777777777777776666555443

>TIGR00634 recN DNA repair protein RecN

Probab=89.95  E-value=17  Score=34.06  Aligned_cols=16  Identities=19%  Similarity=0.160  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHhhhHhh
Q psy1411         177 MELEEELKVVGNSLKS  192 (270)
Q Consensus       177 ~~l~~~~~~~~~~l~~  192 (270)
                      ..+...+..+..++..
T Consensus       325 e~l~~~~~~l~~eL~~  340 (563)
T TIGR00634       325 EEVLEYAEKIKEELDQ  340 (563)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=89.82  E-value=25  Score=35.74  Aligned_cols=6  Identities=33%  Similarity=0.385  Sum_probs=2.1

Q ss_pred             HHHHhH
Q psy1411          10 AMKMEK   15 (270)
Q Consensus        10 ~l~~e~   15 (270)
                      .+...+
T Consensus       534 ~~~~~~  539 (1047)
T PRK10246        534 ALEKEV  539 (1047)
T ss_pred             HHHHHH
Confidence            333333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=89.77  E-value=12  Score=31.99  Aligned_cols=83  Identities=13%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             HHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          10 AMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSE   89 (270)
Q Consensus        10 ~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~   89 (270)
                      .|+..+..++++|..+--....+......+.=+++.|.+.+..++..+..+.+.+.+.-..+..+.+-+..+..++..+.
T Consensus        81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr  160 (302)
T PF09738_consen   81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR  160 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555556666555555555555555555556666666666665555555555554445554444444444444444


Q ss_pred             HHH
Q psy1411          90 ERS   92 (270)
Q Consensus        90 ~~l   92 (270)
                      ..+
T Consensus       161 e~L  163 (302)
T PF09738_consen  161 EQL  163 (302)
T ss_pred             HHH
Confidence            444

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=89.66  E-value=9  Score=30.48  Aligned_cols=91  Identities=11%  Similarity=0.261  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhh
Q psy1411          43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQ  122 (270)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~  122 (270)
                      |.-++.++++++..+..-...+..+...+..........+..+..+...+......++.++..+.-.......+...+..
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~   91 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ   91 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence            34444444444444444333333333333333333333333333333333333333333333333333233333333333


Q ss_pred             hHHHHHHHHHH
Q psy1411         123 DEERMDQLTNQ  133 (270)
Q Consensus       123 ~e~~~~~le~~  133 (270)
                      ++.++..+...
T Consensus        92 le~El~~Lr~~  102 (202)
T PF06818_consen   92 LEAELAELREE  102 (202)
T ss_pred             hHHHHHHHHHH
Confidence            33333333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.61  E-value=20  Score=34.30  Aligned_cols=21  Identities=33%  Similarity=0.336  Sum_probs=8.2

Q ss_pred             HhHHHHHHHHHHHHHHHhhhH
Q psy1411         170 KSGDAKIMELEEELKVVGNSL  190 (270)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~l  190 (270)
                      ..+-.++..++.++..+...+
T Consensus       394 ~~~~~~~~~~e~el~~l~~~l  414 (650)
T TIGR03185       394 SQLLKELRELEEELAEVDKKI  414 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.53  E-value=11  Score=31.30  Aligned_cols=73  Identities=12%  Similarity=0.192  Sum_probs=40.5

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK  191 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~  191 (270)
                      ....|......+-+.++.++..-..+.       ..+.-....+..+++.+......++.++..+..+..+++.......
T Consensus        61 e~s~LkREnq~l~e~c~~lek~rqKls-------hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~  133 (307)
T PF10481_consen   61 EYSALKRENQSLMESCENLEKTRQKLS-------HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS  133 (307)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhh-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333444444444455555444433222       2333334455677777777777777777777777777766655544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.23  E-value=4.7  Score=26.64  Aligned_cols=39  Identities=10%  Similarity=0.212  Sum_probs=24.7

Q ss_pred             HHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411         138 RLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI  176 (270)
Q Consensus       138 ~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~  176 (270)
                      ......+.....++......+..+...|.+|+..+-.++
T Consensus        38 ~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm   76 (79)
T PRK15422         38 SQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   76 (79)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333444444445566677778888888888877765443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.16  E-value=6.9  Score=28.45  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=8.5

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHH
Q psy1411          39 VEVDLDTTKKNLDQAVKDLEERE   61 (270)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~l~~~~   61 (270)
                      ++.++..++..+..+...-..+.
T Consensus        28 ~E~E~~~l~~el~~l~~~r~~l~   50 (120)
T PF12325_consen   28 LEGELASLQEELARLEAERDELR   50 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15456 Uds1: Up-regulated During Septation

Probab=89.15  E-value=7.1  Score=28.57  Aligned_cols=36  Identities=11%  Similarity=0.106  Sum_probs=18.7

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDL   43 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   43 (270)
                      +++.|++++-.+..+++.+...+. ++..+.++...+
T Consensus        23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl   58 (124)
T PF15456_consen   23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSL   58 (124)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            455566666666666666555555 444443333333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=88.96  E-value=21  Score=33.80  Aligned_cols=15  Identities=20%  Similarity=0.244  Sum_probs=5.8

Q ss_pred             HhHHHHHHHHHHHHH
Q psy1411         152 SRKLAFVEDELEVAE  166 (270)
Q Consensus       152 ~~~~~~l~~~l~~~e  166 (270)
                      ...+..+..+.+++.
T Consensus       477 ~~ELqqLReERdRl~  491 (739)
T PF07111_consen  477 SLELQQLREERDRLD  491 (739)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333444443333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=88.72  E-value=0.9  Score=38.76  Aligned_cols=90  Identities=7%  Similarity=0.139  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy1411          57 LEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKE  136 (270)
Q Consensus        57 l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~  136 (270)
                      +..+...+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus        44 v~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~  123 (326)
T PF04582_consen   44 VASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSA  123 (326)
T ss_dssp             --------------------------------------------------------------------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhh
Confidence            33333333333333444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHhHhhh
Q psy1411         137 ARLLAEDADA  146 (270)
Q Consensus       137 ~~~~~~~~~~  146 (270)
                      +...+..++.
T Consensus       124 lsTdvsNLks  133 (326)
T PF04582_consen  124 LSTDVSNLKS  133 (326)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhhhhhhhh
Confidence            4444433333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.60  E-value=12  Score=30.57  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         173 DAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDE  245 (270)
Q Consensus       173 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~  245 (270)
                      +..+.++...++.|..+.......+..+...+..++.-+...+..+......+..+...+.++...++.+...
T Consensus        31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555554444444444445555555556666666555555555555555555555555554443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.37  E-value=16  Score=34.03  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=10.6

Q ss_pred             HHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411         151 VSRKLAFVEDELEVAEDRVKSGDAKI  176 (270)
Q Consensus       151 ~~~~~~~l~~~l~~~e~r~~~~~~~~  176 (270)
                      ..+++..|+.+|.+-..+++.++.++
T Consensus       479 ~~~~I~~L~~~L~e~~~~ve~L~~~l  504 (652)
T COG2433         479 RDRRIERLEKELEEKKKRVEELERKL  504 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=88.23  E-value=13  Score=30.35  Aligned_cols=48  Identities=19%  Similarity=0.152  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          21 KADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAE   68 (270)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e   68 (270)
                      .-.-++..+.+.+..+..+...+..+....+.++.++..+.....+.+
T Consensus        25 p~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e   72 (225)
T COG1842          25 PEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE   72 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555444444444444444444444444444444444333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.00  E-value=21  Score=33.27  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          66 AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLA  100 (270)
Q Consensus        66 ~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~  100 (270)
                      .++..+..+...+..|...+..+...+..+.++++
T Consensus       426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~  460 (652)
T COG2433         426 KLEETVERLEEENSELKRELEELKREIEKLESELE  460 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=87.93  E-value=16  Score=31.14  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA  225 (270)
Q Consensus       146 ~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  225 (270)
                      ..+.+++.++..+..+|..-.+.+..-...|..|..++-.+...++.+-..-+.+...+......-..+..++.++..+.
T Consensus       206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY  285 (306)
T PF04849_consen  206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY  285 (306)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHH
Q psy1411         226 EFAEKTVKKLQKEV  239 (270)
Q Consensus       226 ~~~e~~~~~l~e~~  239 (270)
                      .....-+...++.+
T Consensus       286 ~E~~~mL~EaQEEl  299 (306)
T PF04849_consen  286 AECMAMLHEAQEEL  299 (306)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0979|consensus

Probab=87.77  E-value=30  Score=34.22  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy1411          90 ERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRV  169 (270)
Q Consensus        90 ~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~  169 (270)
                      .....+...+..+.+...........|+++.......+..+...+..+...+...-.++.+...++..+...+..+..+.
T Consensus       255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~  334 (1072)
T KOG0979|consen  255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA  334 (1072)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444555555555555556666556655555566666666666666666666666666666


Q ss_pred             HhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411         170 KSGDAKIMELEEELKVVGNSLKSLEV  195 (270)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~l~~~~~  195 (270)
                      .....++......+..+...+.....
T Consensus       335 ~~rq~~i~~~~k~i~~~q~el~~~~~  360 (1072)
T KOG0979|consen  335 EKRQKRIEKAKKMILDAQAELQETED  360 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence            66666666666777777777666555

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=87.40  E-value=28  Score=33.45  Aligned_cols=17  Identities=6%  Similarity=0.397  Sum_probs=6.8

Q ss_pred             HhHhHhhHHHHHHHHHH
Q psy1411          36 ADKVEVDLDTTKKNLDQ   52 (270)
Q Consensus        36 ~~~~~~~~~~~~~~~~~   52 (270)
                      ...++.+...++..++.
T Consensus        71 ~~~~e~~~~~lr~e~ke   87 (717)
T PF09730_consen   71 CEDLELERKRLREEIKE   87 (717)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=87.39  E-value=22  Score=32.08  Aligned_cols=85  Identities=13%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             HHHHHHHHhHhhHHhHHHH---HHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           6 KKMQAMKMEKDSAMDKADT---CEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE   82 (270)
Q Consensus         6 ~kl~~l~~e~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le   82 (270)
                      +.+++++.+.+.+.+.+..   +.+.+..++..+..+..+...+....              +.+++....+...+..+.
T Consensus       271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~--------------~~mk~K~~~~~g~l~kl~  336 (622)
T COG5185         271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYV--------------NAMKQKSQEWPGKLEKLK  336 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHHHhcchHHHHHH
Confidence            4455555555544443332   23344444444444444444444333              333444444444444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy1411          83 EDLEKSEERSGTATAKLAEASQ  104 (270)
Q Consensus        83 ~el~~~~~~l~~~~~~l~~~e~  104 (270)
                      .++...++++..+++.++++..
T Consensus       337 ~eie~kEeei~~L~~~~d~L~~  358 (622)
T COG5185         337 SEIELKEEEIKALQSNIDELHK  358 (622)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHH
Confidence            5554445554444444444443

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=86.83  E-value=23  Score=31.88  Aligned_cols=12  Identities=8%  Similarity=0.133  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q psy1411         156 AFVEDELEVAED  167 (270)
Q Consensus       156 ~~l~~~l~~~e~  167 (270)
                      ..+...+..+..
T Consensus       285 ~~l~~~i~~l~~  296 (444)
T TIGR03017       285 KRAQAEINSLKS  296 (444)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=86.66  E-value=27  Score=32.47  Aligned_cols=107  Identities=22%  Similarity=0.269  Sum_probs=57.4

Q ss_pred             hHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         142 EDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA  221 (270)
Q Consensus       142 ~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (270)
                      ..+...+.++-..+..+..++...-..++.--.++...++|+..+..--..+...++++-...+.+...+..+.    ..
T Consensus       265 ~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~----~~  340 (557)
T COG0497         265 SELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD----NS  340 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----hh
Confidence            33344444444455555555555555555555566667777777666666666666665555555555554433    23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy1411         222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDR  252 (270)
Q Consensus       222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~  252 (270)
                      ......++..+..+.......-..+...+.+
T Consensus       341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~  371 (557)
T COG0497         341 EESLEALEKEVKKLKAELLEAAEALSAIRKK  371 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555554444444444333

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=86.56  E-value=8.7  Score=26.67  Aligned_cols=61  Identities=15%  Similarity=0.004  Sum_probs=24.5

Q ss_pred             hHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          14 EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAAL   74 (270)
Q Consensus        14 e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l   74 (270)
                      |++.....+..+...+...-..+..++..+..+.......+..++.+.+....+..++..+
T Consensus         4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L   64 (96)
T PF08647_consen    4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL   64 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3344434333333333333333333344444444444444444444444444444333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.46  E-value=15  Score=29.62  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=25.2

Q ss_pred             HHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHh
Q psy1411         139 LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK  191 (270)
Q Consensus       139 ~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~  191 (270)
                      ..+..+..+|++...+++.++.+...++.....+......|..+.+.+...+.
T Consensus       156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            33344444444444455555555555554444444444444444444444433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=86.00  E-value=16  Score=29.13  Aligned_cols=14  Identities=21%  Similarity=0.368  Sum_probs=5.5

Q ss_pred             HHHHHHHHhhhHhh
Q psy1411         179 LEEELKVVGNSLKS  192 (270)
Q Consensus       179 l~~~~~~~~~~l~~  192 (270)
                      |...++.+..+|..
T Consensus       136 l~~e~erL~aeL~~  149 (202)
T PF06818_consen  136 LRREVERLRAELQR  149 (202)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333444444433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=85.77  E-value=7.7  Score=25.37  Aligned_cols=20  Identities=15%  Similarity=0.272  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy1411          73 ALNRKVQMIEEDLEKSEERS   92 (270)
Q Consensus        73 ~l~~r~~~le~el~~~~~~l   92 (270)
                      .+......+..+...+..++
T Consensus        43 ~L~~en~~L~~e~~~~~~rl   62 (72)
T PF06005_consen   43 ELKEENEQLKQERNAWQERL   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=85.43  E-value=34  Score=32.43  Aligned_cols=16  Identities=19%  Similarity=0.362  Sum_probs=6.1

Q ss_pred             HHhhHhHHHHHHHHHH
Q psy1411         166 EDRVKSGDAKIMELEE  181 (270)
Q Consensus       166 e~r~~~~~~~~~~l~~  181 (270)
                      ..|+...+.++..+.-
T Consensus       369 qqr~~~~ed~lk~l~~  384 (786)
T PF05483_consen  369 QQRLKKNEDQLKILTM  384 (786)
T ss_pred             HHHHHHhHHHHHHHHH
Confidence            3333333333333333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=85.11  E-value=17  Score=28.72  Aligned_cols=60  Identities=10%  Similarity=0.118  Sum_probs=29.1

Q ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411         113 CKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK  175 (270)
Q Consensus       113 ~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~  175 (270)
                      +..+-.++..+..++..+...+.....-   --..+......+..+...+.+|.+.+-.+..=
T Consensus       105 R~~~l~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~  164 (188)
T PF03962_consen  105 REELLEELEELKKELKELKKELEKYSEN---DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSY  164 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3334444444444444444444311111   11245555556666666677777766655443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PRK10698 phage shock protein PspA; Provisional

Probab=85.09  E-value=19  Score=29.27  Aligned_cols=47  Identities=13%  Similarity=0.053  Sum_probs=20.7

Q ss_pred             hHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHH
Q psy1411          17 SAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA   63 (270)
Q Consensus        17 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   63 (270)
                      .+++....+..-+.+.+..+..+...+.........+.+++..+...
T Consensus        21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~   67 (222)
T PRK10698         21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQ   67 (222)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555554444444444444444444444444444333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=84.81  E-value=39  Score=32.58  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          73 ALNRKVQMIEEDLEKSEERSGTATA   97 (270)
Q Consensus        73 ~l~~r~~~le~el~~~~~~l~~~~~   97 (270)
                      .+.+-+..+++++.-+..+++++..
T Consensus       125 ~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen  125 GLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555544444444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=84.41  E-value=14  Score=27.12  Aligned_cols=44  Identities=9%  Similarity=0.268  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy1411          76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENR  119 (270)
Q Consensus        76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~  119 (270)
                      .|+..+...++...+-...+...+..+...+.....++..+...
T Consensus        68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~  111 (126)
T PF07889_consen   68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM  111 (126)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444444444444333333333333333333333333333333

The region featured in this family is approximately 100 amino acids long.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=84.36  E-value=21  Score=29.12  Aligned_cols=49  Identities=24%  Similarity=0.270  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy1411          86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL  134 (270)
Q Consensus        86 ~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l  134 (270)
                      .-+...+......+..++..+...-..-..++.++..+......++.+.
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A   75 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA   75 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555555555555555555443

>KOG4360|consensus

Probab=84.30  E-value=33  Score=31.31  Aligned_cols=100  Identities=12%  Similarity=0.205  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHH
Q psy1411          52 QAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLT  131 (270)
Q Consensus        52 ~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le  131 (270)
                      .+.+++.....++......+......+....++...+-..+..++.++..+.-..++...-+....+..+.+..+...++
T Consensus       202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele  281 (596)
T KOG4360|consen  202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE  281 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44445555555555555555555555666666666777777777777777777766666666666666666677666666


Q ss_pred             HHHHHHHHHHhHhhhhHHHH
Q psy1411         132 NQLKEARLLAEDADAKSDEV  151 (270)
Q Consensus       132 ~~l~~~~~~~~~~~~~~~e~  151 (270)
                      .+..+....+.++..++..+
T Consensus       282 DkyAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  282 DKYAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            66666666666655555443

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=83.08  E-value=38  Score=31.14  Aligned_cols=16  Identities=25%  Similarity=0.443  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy1411          86 EKSEERSGTATAKLAE  101 (270)
Q Consensus        86 ~~~~~~l~~~~~~l~~  101 (270)
                      +.++..+..++..++.
T Consensus       277 d~aeeel~~I~e~ie~  292 (570)
T COG4477         277 DEAEEELGLIQEKIES  292 (570)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            3333334333333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.01  E-value=33  Score=29.67  Aligned_cols=52  Identities=19%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHH
Q psy1411          76 RKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERM  127 (270)
Q Consensus        76 ~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~  127 (270)
                      =|.+.+++-...+...+..+......+......+..-+..+......+..++
T Consensus       142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~  193 (325)
T PF08317_consen  142 WRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL  193 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444333333333333333333333333

>TIGR02977 phageshock_pspA phage shock protein A

Probab=81.61  E-value=26  Score=28.32  Aligned_cols=52  Identities=12%  Similarity=0.015  Sum_probs=25.0

Q ss_pred             hHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          17 SAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAE   68 (270)
Q Consensus        17 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e   68 (270)
                      .++++...+...+.+.+..+..+...+..+......+..++..+...+.+..
T Consensus        21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~   72 (219)
T TIGR02977        21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQ   72 (219)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555544444444444444444444444433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>TIGR02231 conserved hypothetical protein

Probab=80.80  E-value=34  Score=31.70  Aligned_cols=19  Identities=16%  Similarity=0.172  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHhHHHHHH
Q psy1411          95 ATAKLAEASQAADEANRMC  113 (270)
Q Consensus        95 ~~~~l~~~e~~~~~~~~~~  113 (270)
                      +..++..+...+..+..++
T Consensus       150 ~~~~~~~~~~~l~~l~~~l  168 (525)
T TIGR02231       150 AERRIRELEKQLSELQNEL  168 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=80.21  E-value=34  Score=28.65  Aligned_cols=52  Identities=25%  Similarity=0.380  Sum_probs=37.5

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS   92 (270)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l   92 (270)
                      .+--+..++..+++....+++-..+|.++..++.++  |-.=++++..+++.++
T Consensus        66 KEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RM--rEDWIEEECHRVEAQL  117 (305)
T PF15290_consen   66 KEVCIRHLKAKLKESENRLHDRETEIDELKSQLARM--REDWIEEECHRVEAQL  117 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            344567777777787788888777877777777764  3455777887777776

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=80.15  E-value=27  Score=27.56  Aligned_cols=39  Identities=23%  Similarity=0.332  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHH
Q psy1411         127 MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA  165 (270)
Q Consensus       127 ~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~  165 (270)
                      .......|.+.+..+.......+.+.+.+.....+++..
T Consensus       132 a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t  170 (188)
T PF05335_consen  132 AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT  170 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444444444444444444444333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=80.09  E-value=49  Score=30.45  Aligned_cols=10  Identities=10%  Similarity=0.252  Sum_probs=4.2

Q ss_pred             HHHHHHhHhh
Q psy1411           8 MQAMKMEKDS   17 (270)
Q Consensus         8 l~~l~~e~~~   17 (270)
                      +..+..++|.
T Consensus       220 ~~e~~~~lP~  229 (570)
T COG4477         220 LAELQTELPG  229 (570)
T ss_pred             HHHHHhhchH
Confidence            3344444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1c1g_A	284	Crystal Structure Of Tropomyosin At 7 Angstroms Res		5e-45
2tma_A	284	Tropomyosin Crystal Structure And Muscle Regulation		9e-45
2w49_A	277	Isometrically Contracting Insect Asynchronous Fligh		5e-41
2b9c_A	147	Structure Of Tropomyosin's Mid-Region: Bending And		1e-26
4a7f_B	136	Structure Of The Actin-Tropomyosin-Myosin Complex (		2e-26
2d3e_A	134	Crystal Structure Of The C-Terminal Fragment Of Rab		9e-14
2efr_A	155	Crystal Structure Of The C-Terminal Tropomyosin Fra		5e-13

>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution In The Spermine-Induced Crystal Form Length = 284

Iteration: 1
 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 177/283 (62%), Gaps = 14/283 (4%)
Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL---------- 50
           MDAIKKKMQ +K++K++A+D+AD  E   K A  R+ ++E +L + +K L          
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 51  DQAVKD----LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
            +A+KD    L                 NR++Q+ EE+L++++ER  TA  KL EA +AA
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ R  KV+E+R+Q+DEE+M+    QLKEA+ +AEDAD K +EV+RKL  +E +LE AE
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
           +R +  + K  ELEEE+K V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK       
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
              ++V KL+K +D LEDEL   K +YK++++E+D    ++  
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation. Appendix. Construction Of An Atomic Model For Tropomyosin And Implications For Interactions With Actin Length = 284

Iteration: 1
 Score =  176 bits (447), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/283 (40%), Positives = 178/283 (62%), Gaps = 14/283 (4%)
Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL---------- 50
           MDAIKKKMQ +K++K++A+D+A+  E   K A  R+ ++E +L + +K L          
Sbjct: 1   MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 51  DQAVKD----LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
            +A+KD    L                 NR++Q++EE+L++++ER  TA  KL EA +AA
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
           DE+ R  KV+E+R+Q+DEE+M+    QLKEA+ +AEDAD K +EV+RKL  +E +LE AE
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXX 226
           +R +  + K  ELEEE+K V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK       
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 227 XXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
              ++V KL+K +D LEDEL   K +YK++++E+D    ++  
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 277

Iteration: 1
 Score =  164 bits (415), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 14/271 (5%)
Query: 8   MQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL----------DQAVKD- 56
           MQ +K++K++A+D+A+  E   K A  R+ ++E +L + +K L           +A+KD 
Sbjct: 1   MQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDA 60
Query: 57  ---LXXXXXXXXXXXXXXXXXNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
              L                 NR++Q++EE+L++++ER  TA  KL EA +AADE+ R  
Sbjct: 61  QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 120
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
           KV+E+R+Q+DEE+M+    QLKEA+ +AEDAD K +EV+RKL  +E +LE AE+R +  +
Sbjct: 121 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 180
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXXXXXKTVK 233
            K  ELEEELK V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK          ++V 
Sbjct: 181 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 240
Query: 234 KLQKEVDRLEDELGLNKDRYKSLADEMDSTF 264
           KL+K +D LEDEL   K +YK++++E+D   
Sbjct: 241 KLEKSIDDLEDELYAQKLKYKAISEELDHAL 271

>pdb|2B9C|A Chain A, Structure Of Tropomyosin's Mid-Region: Bending And Binding Sites For Actin Length = 147

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 92/120 (76%)
Query: 75  NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134
           NR++Q++EE+L++++ER  TA  KL EA +AADE+ R  KV+E+R+Q+DEE+M+    QL
Sbjct: 2   NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL 61
Query: 135 KEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLE 194
           KEA+ +AEDAD K +EV+RKL  +E +LE AE+R +  + K  ELEEELK V N+LKSLE
Sbjct: 62  KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121

>pdb|4A7F|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 136

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 100/136 (73%)
Query: 84  DLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAED 143
           +L++++ER  TA  KL EA +AADE+ R  KV+E+R+Q+DEE+M+    QLKEA+ +AED
Sbjct: 1   ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 60
Query: 144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQR 203
           AD K +EV+RKL  +E +LE AE+R +  + K  ELEEELK V N+LKSLE   EK +Q+
Sbjct: 61  ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQK 120
Query: 204 VEEYKRQIKQLAVKLK 219
            ++Y+ +IK L+ KLK
Sbjct: 121 EDKYEEEIKVLSDKLK 136

>pdb|2D3E|A Chain A, Crystal Structure Of The C-Terminal Fragment Of Rabbit Skeletal Alpha-Tropomyosin Length = 134

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 68/108 (62%)
Query: 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXX 221
           LE AE+R +  + K  ELEEELK V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK  
Sbjct: 26  LERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 85
Query: 222 XXXXXXXXKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
                   ++V KL+K +D LEDEL   K +YK++++E+D    ++  
Sbjct: 86  ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 133

>pdb|2EFR|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment With N- And C-Terminal Extensions Of The Leucine Zipper At 1.8 Angstroms Resolution Length = 155

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 87/135 (64%), Gaps = 7/135 (5%)
Query: 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
           RM QL ++++E  LL+++   + +EV+R    ++  LE AE+R +  + K  ELEEELK 
Sbjct: 1   RMKQLEDKVEE--LLSKNYHLE-NEVAR----LKKLLERAEERAELSEGKSAELEEELKT 53
Query: 186 VGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKXXXXXXXXXXKTVKKLQKEVDRLEDE 245
           V N+LKSLE   EK +Q+ ++Y+ +IK L+ KLK          ++V KL+K +D LEDE
Sbjct: 54  VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 113
Query: 246 LGLNKDRYKSLADEM 260
           L   K +YK++++EM
Sbjct: 114 LYAQKLKYKAISEEM 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	4e-12
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	4e-10
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-08
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	3e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 36/258 (13%), Positives = 102/258 (39%)

Query: 5    KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
            ++    +  +K    +     E + ++   R+ +++ +    ++ +    + LEE E A 
Sbjct: 912  EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971

Query: 65   AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE 124
               + E    + K++ +E+D+   E+++   T +     +   +        E +++   
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 125  ERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELK 184
            +  ++  + + E  +  +  +    E+ +    +E E     +++    A+I EL+ +L 
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 185  VVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
                 L++     E    +     ++I++L   + + +   E  +    K +K+   L +
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151

Query: 245  ELGLNKDRYKSLADEMDS 262
            EL   K   +   D   +
Sbjct: 1152 ELEALKTELEDTLDTTAT 1169

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.4 bits (188), Expect = 7e-16
 Identities = 40/275 (14%), Positives = 111/275 (40%), Gaps = 10/275 (3%)

Query: 3    AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV---EVDLDTTKKNLDQAVKDLEE 59
             +++K   +  EK+   +K         +A     ++   + +L+     ++  +++ EE
Sbjct: 882  ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941

Query: 60   REKALAAA----ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKV 115
            R + L A     + ++  L  +++  E   +K +    TA  K+ +              
Sbjct: 942  RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001

Query: 116  LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175
            L    +  EER+  LT  L E    A++     ++    ++ +E  L+  E   +  +  
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 176  IMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235
              +LE E   +   +  L+    +   ++ + + +++    +L++  ++   A K +++L
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

Query: 236  QKEVDRLEDELG---LNKDRYKSLADEMDSTFAEL 267
            +  +  L+++L      +++ +    ++      L
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 7/230 (3%)

Query: 46   TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAK------- 98
            TK+   +A  +L+E E+       E   L  K+Q   E   ++EE      AK       
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 99   LAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFV 158
            L E     +E     + L+   ++ +++M  L  QL+E     +    +      K+  +
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 159  EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
            ED++ + ED+      +   LEE +  +  +L   E   +   +   +++  I +L V+L
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048

Query: 219  KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
            K+ E   +  EK  +KL+ E   L +++   + +   L  ++     EL 
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 70.2 bits (172), Expect = 8e-14
 Identities = 35/267 (13%), Positives = 105/267 (39%), Gaps = 7/267 (2%)

Query: 2    DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
              +  K Q ++        + +  E +++       K++  +   ++ L++     ++ +
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 62   KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
                 A+ ++  +   + ++E+   K  +       ++++ +    E     K L     
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 122  QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEE 181
            + E  + +L  +LK+     ++ +    ++  + + + +++   + ++    A++ + EE
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 182  ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV-- 239
            EL+     L+     +  A +++ E +  I  L   L+  +A    AEK  + L +E+  
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 240  -----DRLEDELGLNKDRYKSLADEMD 261
                 +   D     ++   S   + D
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 31/220 (14%), Positives = 84/220 (38%), Gaps = 7/220 (3%)

Query: 1    MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
            ++  +   Q +++EK +A  K    E        + +K+  +    ++ +     +L E 
Sbjct: 964  LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

Query: 61   E-------KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
            E       K     ES ++ L  +++  E+  ++ E+       + ++  +   E     
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 114  KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
              L+ +  + EE +     +L++      +A  K  E+   ++ ++++LE  +      +
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 174  AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQ 213
             +  +L EEL+ +   L+    +     +      +    
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 34/253 (13%), Positives = 91/253 (35%), Gaps = 9/253 (3%)

Query: 5    KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
            +K+ Q M+    +          + K   +  +   + +    +     V      +  +
Sbjct: 832  RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV 891

Query: 65   ---AAAESEVAAL-NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
                     +A    +K+++    +E+ ++       K+ +  +  DE N+  K L  + 
Sbjct: 892  YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951

Query: 121  QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
               E      T +L+        ++ ++   + ++  +++E+      +     +   +E
Sbjct: 952  NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 181  EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
            E      +  + L    ++ N  ++  K ++ +     +  +   E  E   KKL +E  
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNR-----RIHDQAKEITETMEKKLVEETK 1066

Query: 241  RLEDELGLNKDRY 253
            +LE +L   + RY
Sbjct: 1067 QLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 29/238 (12%), Positives = 80/238 (33%), Gaps = 8/238 (3%)

Query: 34   LRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVA-ALNRKVQMIEEDLEKSEERS 92
                K    +      L   ++    R K         +  + + V+     +       
Sbjct: 829  YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888

Query: 93   GTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152
                 +       A    +  K+     ++ ++    L N++ + +   ++ + +   + 
Sbjct: 889  AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948

Query: 153  RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIK 212
             K+  +E       ++++S   ++   EEE K   N + SL+    K  + + + + + K
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 213  QLAVKLKEAEARAE----FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266
             +     + +   E      ++    L+ E + L   +    D+ K + + M+    E
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI---HDQAKEITETMEKKLVE 1063

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 32/202 (15%), Positives = 63/202 (31%), Gaps = 10/202 (4%)

Query: 67   AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEER 126
                   +      ++  L     R+          S    +  R       R       
Sbjct: 831  VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA---RVHYHRTL 887

Query: 127  MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVV 186
               +  Q    R++A+          +KL      +E  +      + KIM+L+ ++   
Sbjct: 888  KAIVYLQCCYRRMMAK-------RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940

Query: 187  GNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246
                KSL                +++    +L+ +E  A+ A   V  LQ+E+ +L  EL
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000

Query: 247  GLNKDRYKSLADEMDSTFAELA 268
               +   K++ +  D    E  
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETE 1022

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 26/230 (11%)

Query: 4    IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA 63
            I+K ++                  Q     + A +         K L    + +E  +K 
Sbjct: 870  IQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL-------KKLKIEARSVERYKKL 922

Query: 64   LAAAESEVAALNRKVQMIEEDLE-------KSEERSGTATAKLAEASQAADEANRMCKVL 116
                E+++  L RK+    ++ +         E    T T KL    +    +    K  
Sbjct: 923  HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982

Query: 117  ENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI 176
             NR    +E + +L  +L + +   +  +  +D+   +   +  EL+     +K    + 
Sbjct: 983  TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK---TEK 1039

Query: 177  MELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
             EL   +          + ++E      ++   + KQL + L +   R +
Sbjct: 1040 EELNRRIH---------DQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 28/209 (13%), Positives = 71/209 (33%), Gaps = 6/209 (2%)

Query: 59   EREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN 118
            +R + +  A   + AL R   +  +      E       K      A    +R  K +  
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892

Query: 119  RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIME 178
                    M +   +LK+ ++ A   + +  ++   L   E+++   + ++   + +   
Sbjct: 893  LQCCYRRMMAKR--ELKKLKIEARSVE-RYKKLHIGL---ENKIMQLQRKIDEQNKEYKS 946

Query: 179  LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238
            L E++  +  +  +         +R+   + + K    ++   +       K + + Q E
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 239  VDRLEDELGLNKDRYKSLADEMDSTFAEL 267
               +E+     K   + L  E+      L
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLL 1035

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147

 Score = 61.6 bits (149), Expect = 4e-12
 Identities = 68/147 (46%), Positives = 103/147 (70%)

Query: 74  LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ 133
           +NR++Q++EE+L++++ER  TA  KL EA +AADE+ R  KV+E+R+Q+DEE+M+    Q
Sbjct: 1   MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ 60

Query: 134 LKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL 193
           LKEA+ +AEDAD K +EV+RKL  +E +LE AE+R +  + K  ELEEELK V N+LKSL
Sbjct: 61  LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120

Query: 194 EVSEEKANQRVEEYKRQIKQLAVKLKE 220
           E   E+   +    + ++ +L   + E
Sbjct: 121 EDKVEELLSKNYHLENEVARLKKLVGE 147

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Length = 101

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 14/98 (14%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           MDAIKKKMQ +K++K++A+D+A+  E   K A  R+ +               E   D  
Sbjct: 4   MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84
            + L ++   L   E+  A AESEVA+LNR++Q++EE+
Sbjct: 64  LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 27/194 (13%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 83   EDLEKSEERSGTATAKLAEASQAADEANRMC----KVLENRSQQDEERMDQLTNQLKEAR 138
            + LE+ +        KL +      +         + L+ +++Q  +++ Q+    + A 
Sbjct: 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAE 1972

Query: 139  LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE 198
            +  +DA     ++  +   +  +   A   ++        L EE++ + N+   L++ ++
Sbjct: 1973 IKQKDARELQVQLDVRNKEIAVQKVKAYADLEK-AEPTGPLREEVEQLENAANELKLKQD 2031

Query: 199  KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR---LEDELGLNKDRYKS 255
            +    +   ++ I     +        E  +    K++ +VDR   L D L   + R++ 
Sbjct: 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091

Query: 256  LADEMDSTFAELAG 269
             ++  ++  + + G
Sbjct: 2092 QSENFNTQMSTVVG 2105

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Length = 101

 Score = 48.4 bits (115), Expect = 8e-08
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 14/98 (14%)

Query: 1   MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
           M+AIKKKMQ +K++K++A+D+A+  E   K A  R  +               E +++  
Sbjct: 4   MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63

Query: 47  KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84
            +++ +A + LE+ EK    AE+EVA+LNR++Q++EE+
Sbjct: 64  SESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 71/219 (32%)

Query: 110 NRMCKVLENRSQQDEERMDQL---TNQLKEA--RLLAEDADAKS----DEV-SRKL--AF 157
            ++   ++       +    +    + ++    RLL              V + K   AF
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 158 --------------VEDELEVAEDRVKSGDAKIMELEEE------LKVVGNSLKSL---- 193
                         V D L  A     S D   M L  +      LK +    + L    
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 194 -------------EVSEEKANQRVEEYKR-QIKQL--AVK-----LKEAEARAEFA---- 228
                         + +  A    + +K     +L   ++     L+ AE R  F     
Sbjct: 323 LTTNPRRLSIIAESIRDGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 229 --------EKTVKKLQKEVDRLEDELGLNKDRYKSLADE 259
                      +  +  +V + +  + +NK    SL ++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 71/249 (28%)

Query: 19  MDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREK-ALAAAE--------S 69
           MD  +T E Q +  ++    + V  D    N D   KD+++  K  L+  E         
Sbjct: 7   MD-FETGEHQYQYKDI----LSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 70  EVAAL-----------NRKVQM-IEEDLE----------KSEERSGTATAKLAEASQAAD 107
            V+                VQ  +EE L           K+E+R  +   ++       +
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-----E 114

Query: 108 EANRMC---KVLENRSQQDEERMDQLTNQLKEAR----------------LLAEDADAKS 148
           + +R+    +V    +    +   +L   L E R                 +A D    S
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLS 173

Query: 149 DEVSRKLAFVEDE---LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVE 205
            +V  K+ F   +   L +      S +  +  L++ L  +  +  S          R+ 
Sbjct: 174 YKVQCKMDF---KIFWLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 206 EYKRQIKQL 214
             + ++++L
Sbjct: 229 SIQAELRRL 237

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL--AV 216
           E  +  A       D+    LE+  +    +L+     ++K    +++Y R +K+L    
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWA 902

Query: 217 KLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
             K     +     ++  +Q ++  LE   G  +        ++ S  A+L
Sbjct: 903 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 953

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 58/135 (42%), Positives = 91/135 (67%)

Query: 133 QLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKS 192
           ++K+     E+  +K+  +  ++A ++  LE AE+R +  + K  ELEEELK V N+LKS
Sbjct: 1   RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60

Query: 193 LEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDR 252
           LE   EK +Q+ ++Y+ +IK L+ KLKEAE RAEFAE++V KL+K +D LEDEL   K +
Sbjct: 61  LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120

Query: 253 YKSLADEMDSTFAEL 267
           YK++++EM     ++
Sbjct: 121 YKAISEEMKQLEDKV 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.82
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	99.61
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.61
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	99.59
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.12
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	99.11
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	99.02
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	98.75
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	98.71
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	98.27
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.22
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.08
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.94
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	97.72
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	97.71
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.61
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.53
2z5i_I	40	TM, tropomyosin alpha-1 chain and general control	97.32
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.26
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	96.97
2z5i_A	52	TM, general control protein GCN4 and tropomyosin a	96.89
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.6
3mtu_A	75	Tropomyosin alpha-1 chain, microtubule-associated	96.31
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	95.95
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.91
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.57
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.89
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	94.85
3azd_A	37	Short alpha-tropomyosin, transcription factor GCN;	94.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.06
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	94.04
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.03
3mtu_E	77	Head morphogenesis protein, tropomyosin alpha-1 C;	92.12
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.04
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	91.54
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	91.49
3mud_A	175	DNA repair protein XRCC4, tropomyosin alpha-1 CHA;	90.93
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	89.74
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.2
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.07
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	87.91
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	86.21
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	85.61
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	85.47
3bas_A	89	Myosin heavy chain, striated muscle/general contro	85.03
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	83.3
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	83.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	80.99

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.82  E-value=3.7e-15  Score=123.70  Aligned_cols=270  Identities=48%  Similarity=0.689  Sum_probs=199.3

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDL--------------EEREKALAA   66 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~~~~~~~~   66 (270)
                      ||.||++|..+..+++.+...+..+...+..+...+..+...+..+...+..+...+              ..+...+..
T Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (284)
T 1c1g_A            1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATD   80 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999888888877777777666555555444444444443333              333334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhh
Q psy1411          67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADA  146 (270)
Q Consensus        67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~  146 (270)
                      +...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (284)
T 1c1g_A           81 AEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR  160 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555555555555555555555555555555566666666666666666777667777777777


Q ss_pred             hHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         147 KSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE  226 (270)
Q Consensus       147 ~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  226 (270)
                      .+..+...+..+...+..+..++..+..++..+..++..+...+..+......+......+...+..+...+..+...+.
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  240 (284)
T 1c1g_A          161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE  240 (284)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777888888888888888888888888888888877777777677777778888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       227 ~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      .+...+..+...+..+...+..+...+..+...++++.+.|++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  284 (284)
T 1c1g_A          241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI  284 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999876

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=99.61  E-value=2.1e-13  Score=101.25  Aligned_cols=137  Identities=45%  Similarity=0.602  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Q psy1411         127 MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEE  206 (270)
Q Consensus       127 ~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  206 (270)
                      ++.++.+|+++   ..++.++|+++.+    ++.+|.+++.|++.++.++..|++.+..+..++++++...+.+..+.+.
T Consensus         2 ~~~lE~qlkea---ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~   74 (155)
T 2efr_A            2 MKQLEDKVEEL---LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDK   74 (155)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence            56778888766   7889999999888    9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         207 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       207 ~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      |...|..+...++++..+++.+++.+.+|+..+..++..+...+.++..+..+||+++++|++|
T Consensus        75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~  138 (155)
T 2efr_A           75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL  138 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999864

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.61  E-value=1.3e-10  Score=95.96  Aligned_cols=236  Identities=15%  Similarity=0.192  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA  105 (270)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~  105 (270)
                      ...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (284)
T 1c1g_A           47 QKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG  126 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444445555555566666666777777777777777777777777777777777777777766666666666


Q ss_pred             HhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy1411         106 ADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV  185 (270)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~  185 (270)
                      +..+...+..+...+..+...+..+...+..+...+......+..+...+..+...+..+..++..+..++..+...+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (284)
T 1c1g_A          127 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKS  206 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666667777666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy1411         186 VGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD  261 (270)
Q Consensus       186 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld  261 (270)
                      +...+..+......+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  282 (284)
T 1c1g_A          207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT  282 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666655555666666677777777777777777777777777777777777777777777777776665553

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=99.59  E-value=3.6e-15  Score=110.60  Aligned_cols=144  Identities=47%  Similarity=0.633  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHh
Q psy1411          74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSR  153 (270)
Q Consensus        74 l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~  153 (270)
                      +.+|+..+++++++...++.....++..+++..++..+.++.|+++.....+.+..++.+|+.+...+.++.++|+++.+
T Consensus         1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~R   80 (147)
T 2b9c_A            1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR   80 (147)
T ss_dssp             ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVK  217 (270)
Q Consensus       154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  217 (270)
                      ++.+++.+|.+++.|++.++.++..|+..+..+.+++++++.+.+.++.+.+.|...|..+..+
T Consensus        81 Kl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~k  144 (147)
T 2b9c_A           81 KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKL  144 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998876543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.17  E-value=1.1e-10  Score=114.75  Aligned_cols=14  Identities=21%  Similarity=0.328  Sum_probs=5.4

Q ss_pred             HHHHHHHHHhHhhH
Q psy1411           5 KKKMQAMKMEKDSA   18 (270)
Q Consensus         5 ~~kl~~l~~e~~~~   18 (270)
                      +.++..+...+..+
T Consensus       863 ~~eL~el~~~L~~l  876 (1184)
T 1i84_S          863 DEELQRTKERQQKA  876 (1184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.12  E-value=2e-10  Score=113.11  Aligned_cols=126  Identities=16%  Similarity=0.158  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED   84 (270)
Q Consensus         5 ~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~e   84 (270)
                      .++|..+..++..+...+..++..+..++..+..+..+...+...+......+..+...+..+......+..++..+..+
T Consensus       856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e  935 (1184)
T 1i84_S          856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR  935 (1184)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666555555555555555555555555554444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHH
Q psy1411          85 LEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQL  130 (270)
Q Consensus        85 l~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~l  130 (270)
                      +......+..+...+..++..+..+...+..++..+..+..++..+
T Consensus       936 lee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~l  981 (1184)
T 1i84_S          936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA  981 (1184)
T ss_dssp             HHHHHHC---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433333333333333333333333333333333333333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=99.11  E-value=3.7e-09  Score=73.51  Aligned_cols=97  Identities=32%  Similarity=0.433  Sum_probs=84.9

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM   80 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~   80 (270)
                      ||+||+||..|+.+.+.+.++++.++..+..++..                            ...++.++.++++|+..
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~----------------------------~~~~E~Ei~sL~kk~~~   55 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEER----------------------------SKQLEDDIVQLEKQLRV   55 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhHHHHHHHHHHHHH
Confidence            89999999999999999999999877777666544                            46677788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHH
Q psy1411          81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEE  125 (270)
Q Consensus        81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~  125 (270)
                      ++.+++.+...+......+...+.....++..+..|..+++.+++
T Consensus        56 lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE  100 (101)
T 3u1c_A           56 TEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999898888888888877654

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=99.02  E-value=1.2e-08  Score=71.00  Aligned_cols=97  Identities=37%  Similarity=0.485  Sum_probs=83.3

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM   80 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~   80 (270)
                      ||+||+||..|+.+.+.+.++++.++..+..++..                            ...++.++.++.+++..
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~----------------------------~~~~E~ei~sL~kKiq~   55 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDR----------------------------CKQLEEEQQGLQKKLKG   55 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhHHHHHHHHHHHHH
Confidence            89999999999999999999999888777766554                            35566777888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHH
Q psy1411          81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEE  125 (270)
Q Consensus        81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~  125 (270)
                      ++.+++.+...+..+...++..+.....++..+..|..+++.+++
T Consensus        56 lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEE  100 (101)
T 3u59_A           56 TEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999888888888888776643

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=98.75  E-value=2.2e-05  Score=58.25  Aligned_cols=118  Identities=19%  Similarity=0.287  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHH
Q psy1411          81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVED  160 (270)
Q Consensus        81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~  160 (270)
                      ++.++.+.+++......++..++..+....+.++.++..-......-+.++.++..+...+.++...++.+.+.+..++.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999998988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHH
Q psy1411         161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE  198 (270)
Q Consensus       161 ~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~  198 (270)
                      .+++++..+.........+...++..-..|.++..+.-
T Consensus       106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~  143 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNY  143 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            99999999999999988888888888777777655543

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=98.71  E-value=2.8e-07  Score=61.38  Aligned_cols=79  Identities=41%  Similarity=0.545  Sum_probs=67.2

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM   80 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~   80 (270)
                      ||+||+||..|+.+.+.+.++++.++..+..++..                            ...++.++.++.+++..
T Consensus         1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~----------------------------~~~~E~ev~~L~kKiq~   52 (81)
T 1ic2_A            1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEER----------------------------SKQLEDELVALQKKLKG   52 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhhHHHHHHHHHHHHH
Confidence            99999999999999999999998877777665444                            46677788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1411          81 IEEDLEKSEERSGTATAKLAEASQAAD  107 (270)
Q Consensus        81 le~el~~~~~~l~~~~~~l~~~e~~~~  107 (270)
                      ++.+++.+...+..+..+++.++..+.
T Consensus        53 lE~eld~~ee~l~~a~~kLeeaek~~~   79 (81)
T 1ic2_A           53 TEDELDKYSESLKDAQEKLELADKKAT   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999988888776543

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=98.27  E-value=0.00015  Score=53.58  Aligned_cols=117  Identities=24%  Similarity=0.300  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK  233 (270)
Q Consensus       154 ~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~  233 (270)
                      ++..++...+..++....++.+...-.+++..+..+|+.+....+....+.+.....+..+...+..+..++..++..+.
T Consensus        25 kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~  104 (147)
T 2b9c_A           25 KLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA  104 (147)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444455566666677777778888888888888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         234 KLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       234 ~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      .|...+..+.+.+..++..-..+...-+.+...|..+
T Consensus       105 eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L  141 (147)
T 2b9c_A          105 ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL  141 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888877643

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.22  E-value=0.0011  Score=54.00  Aligned_cols=103  Identities=14%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHH
Q psy1411          81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVED  160 (270)
Q Consensus        81 le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~  160 (270)
                      +-.++..+...+..+...+..+...+..+...+..++..+......+.....++...+     ..+.|       ..+..
T Consensus        30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE~-------~aL~k   97 (256)
T 3na7_A           30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SEREL-------RSLNI   97 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSHH-------HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHH-------HHHHH
Confidence            3344444444444444444444444444444444444555555555555544443111     22333       44444


Q ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHH
Q psy1411         161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEV  195 (270)
Q Consensus       161 ~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~  195 (270)
                      ++..+..++..++..+..+..+++.+...+..+..
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~  132 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK  132 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555555555444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.08  E-value=0.0014  Score=53.40  Aligned_cols=59  Identities=27%  Similarity=0.383  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          41 VDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL   99 (270)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l   99 (270)
                      ..+..+...+..+...+..+...+..+...+..+...+..++.++..+...+.....++
T Consensus        25 ~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l   83 (256)
T 3na7_A           25 PLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM   83 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444444444444444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.94  E-value=0.0035  Score=47.92  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q psy1411          71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE  150 (270)
Q Consensus        71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e  150 (270)
                      +.-|......+...+..++..+.+.++.-.+++..++   ..+..++.+...+...+..+...+...+..+.......  
T Consensus        12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~--   86 (189)
T 2v71_A           12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS--   86 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3444444444444444444444444444444443332   45556666666666666666555555555554443332  


Q ss_pred             HHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         151 VSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEK  230 (270)
Q Consensus       151 ~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~  230 (270)
                       ...+..+..++..+......+..++..|+-.-+.+....-......+++..++....+....++..+.+    -..+..
T Consensus        87 -~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E----Ke~l~~  161 (189)
T 2v71_A           87 -YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE----KESLLV  161 (189)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence             345677777777777777777777777777777777777777777777777777777777777777664    223444


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy1411         231 TVKKLQKEVDRLEDEL  246 (270)
Q Consensus       231 ~~~~l~e~~~~le~~l  246 (270)
                      .+..|+..+..+..++
T Consensus       162 ~~QRLkdE~rDLk~El  177 (189)
T 2v71_A          162 SVQRLKDEARDLRQEL  177 (189)
T ss_dssp             CC--------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555544443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=97.72  E-value=0.00087  Score=46.32  Aligned_cols=81  Identities=26%  Similarity=0.411  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE   82 (270)
Q Consensus         3 ~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le   82 (270)
                      ...-+.+.+...+..+..++..++..+..+...+..++.+++.+...+..+...+.........++.++.++.+|+..++
T Consensus        20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677777888888888999999999999999999999999999999999999999999999999999999999886


Q ss_pred             H
Q psy1411          83 E   83 (270)
Q Consensus        83 ~   83 (270)
                      +
T Consensus       100 E  100 (101)
T 3u59_A          100 E  100 (101)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=97.71  E-value=0.0035  Score=43.20  Aligned_cols=92  Identities=20%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q psy1411          71 VAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE  150 (270)
Q Consensus        71 ~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e  150 (270)
                      ++.+..++..+..+.+.+......+...+..++.....++.++..|..++..++..++.+...|..+...+.........
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~   83 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK   83 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888888888888888888888888888888888888888888888888888888887776666666555544


Q ss_pred             HHhHHHHHHHHH
Q psy1411         151 VSRKLAFVEDEL  162 (270)
Q Consensus       151 ~~~~~~~l~~~l  162 (270)
                      +...+.++...+
T Consensus        84 aE~ev~~L~Rri   95 (101)
T 3u1c_A           84 AESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.71  E-value=0.0091  Score=45.62  Aligned_cols=49  Identities=22%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411         115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELE  163 (270)
Q Consensus       115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~  163 (270)
                      .+...+..++..-+.++.........+.+...+|..+--+...++++++
T Consensus       106 ~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444433344444444444444444444444444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.61  E-value=0.011  Score=44.04  Aligned_cols=75  Identities=9%  Similarity=0.043  Sum_probs=34.9

Q ss_pred             HHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMI   81 (270)
Q Consensus         7 kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~l   81 (270)
                      |+-.|.+++..+.+.+..-......+++...++......+.....+++..+..+......++.++..++..+..-
T Consensus         7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE   81 (168)
T 3o0z_A            7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE   81 (168)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666665555555555554444444444444444444444444444444444444444444443333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.53  E-value=0.12  Score=55.55  Aligned_cols=95  Identities=12%  Similarity=0.141  Sum_probs=38.5

Q ss_pred             hHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          14 EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG   93 (270)
Q Consensus        14 e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~   93 (270)
                      ++.....++...=..+.++...+..++.++...+..+.....+...+-..+..-..+++.   +...+...-..+.....
T Consensus      1914 el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~---~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A         1914 QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEI---KQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            333334444444444444555555555555555555554444444433333332222222   22222222233333334


Q ss_pred             HHHHHHHHHHHHHhHHHH
Q psy1411          94 TATAKLAEASQAADEANR  111 (270)
Q Consensus        94 ~~~~~l~~~e~~~~~~~~  111 (270)
                      ++.+.-..++.+++++.+
T Consensus      1991 ei~~~k~~~e~dL~~A~P 2008 (3245)
T 3vkg_A         1991 EIAVQKVKAYADLEKAEP 2008 (3245)
T ss_dssp             HHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHHhhcCC
Confidence            444444555555555543

>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A

Probab=97.32  E-value=0.00057  Score=38.07  Aligned_cols=32  Identities=47%  Similarity=0.726  Sum_probs=29.5

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDA   32 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~   32 (270)
                      ||+||+||..|+.+.+.+.++++.++......
T Consensus         5 MdAIKKKMq~lK~ekd~A~drAe~~E~~~k~~   36 (40)
T 2z5i_I            5 MDAIKKKMQMLKLDKENALDRAEQLENEVARL   36 (40)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            89999999999999999999999988887654

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.26  E-value=0.033  Score=41.49  Aligned_cols=132  Identities=13%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHH
Q psy1411         119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE  198 (270)
Q Consensus       119 ~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~  198 (270)
                      ++..++..++.+...|..-......+.....++...+..++..+.++..++..+...-..|+..+..+...|..-.....
T Consensus         7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~   86 (168)
T 3o0z_A            7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRG   86 (168)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555554444444444455555566666666666666666666666666677777666666666555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy1411         199 KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNK  250 (270)
Q Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~l~e~~~~le~~l~~~~  250 (270)
                      ........++..+..+..++.........+......|.+.+..++.....++
T Consensus        87 q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           87 HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5555556666667777776666666666666666666666666666555444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=96.97  E-value=0.024  Score=37.22  Aligned_cols=75  Identities=27%  Similarity=0.365  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh
Q psy1411          73 ALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK  147 (270)
Q Consensus        73 ~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~  147 (270)
                      .+..++..+..+.+.+..++..+...+..++.....++..+..+..++..++..++.+...+..+...+......
T Consensus         3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~   77 (81)
T 1ic2_A            3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777788888888888888888888888888888888888888888888888888877777776666665544

>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C

Probab=96.89  E-value=0.0029  Score=37.70  Aligned_cols=49  Identities=33%  Similarity=0.514  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      -.+.+.+++.+.+|+..++.++.++...+.++..+..++|++++++++|
T Consensus         4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el~~~   52 (52)
T 2z5i_A            4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMTSI   52 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence            3577889999999999999999999999999999999999999999875

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.60  E-value=0.13  Score=37.84  Aligned_cols=65  Identities=12%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411         111 RMCKVLENRSQQDEERMDQLTNQ-LKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK  175 (270)
Q Consensus       111 ~~~~~l~~~~~~~e~~~~~le~~-l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~  175 (270)
                      ......+.....++.+++.|... |.+++.-+.........+..+...+...+.+....+..+..+
T Consensus        72 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q  137 (154)
T 2ocy_A           72 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ  137 (154)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555556666666555 444444444444444444444444444444444433333333

>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*

Probab=96.31  E-value=0.011  Score=38.10  Aligned_cols=41  Identities=41%  Similarity=0.647  Sum_probs=34.7

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHH-------HHHHHHHHHhHhHh
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEG-------QAKDANLRADKVEV   41 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~-------~l~~~~~~~~~~~~   41 (270)
                      ||.||++|..|+.+.+.+.++++.++.       .+..++.-.+....
T Consensus         4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~   51 (75)
T 3mtu_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEG   51 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999988       77777666555443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.95  E-value=0.035  Score=39.78  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHhHhhhhHHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q psy1411         112 MCKVLENRSQQDEERMDQLTNQ-LKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL  179 (270)
Q Consensus       112 ~~~~l~~~~~~~e~~~~~le~~-l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l  179 (270)
                      .....+.....++.+++.|... |.+++.-+..+......+..+...+...+.+.+..+..+..++..|
T Consensus        61 ~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L  129 (135)
T 2e7s_A           61 LRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNL  129 (135)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555556666666666665 5566666666666666666666666666666655555555544433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.91  E-value=0.29  Score=35.09  Aligned_cols=49  Identities=14%  Similarity=0.189  Sum_probs=19.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          40 EVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS   88 (270)
Q Consensus        40 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~   88 (270)
                      ......+......+...+..-...+.+++..+..+..+...++..+..+
T Consensus        40 e~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el   88 (129)
T 2fxo_A           40 EEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333344444444444333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.57  E-value=0.85  Score=44.59  Aligned_cols=30  Identities=30%  Similarity=0.336  Sum_probs=12.3

Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHhhhHhhH
Q psy1411         164 VAEDRVKSGDAKIMELEEELKVVGNSLKSL  193 (270)
Q Consensus       164 ~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~  193 (270)
                      .+...+..++..+..+...+..+..+.+.+
T Consensus       981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.27  E-value=1.3  Score=43.37  Aligned_cols=36  Identities=8%  Similarity=0.141  Sum_probs=17.5

Q ss_pred             HhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q psy1411         152 SRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVG  187 (270)
Q Consensus       152 ~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~  187 (270)
                      ..++..++.++..+...+..+......+++....+.
T Consensus       983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555444544444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.89  E-value=1.3  Score=40.21  Aligned_cols=69  Identities=4%  Similarity=0.040  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411          67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK  135 (270)
Q Consensus        67 ~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~l~~~~~~~e~~~~~le~~l~  135 (270)
                      +...+..+..+...+...+......+......++.++.+...++..+.....++..+..+...+...++
T Consensus       507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~  575 (597)
T 3oja_B          507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK  575 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            333444444444444445544454444444444444444444444444444444444444444444444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.85  E-value=0.81  Score=33.63  Aligned_cols=85  Identities=20%  Similarity=0.135  Sum_probs=43.4

Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh-HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhh
Q psy1411         110 NRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK-SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGN  188 (270)
Q Consensus       110 ~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~-~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~  188 (270)
                      ...+..|...+..-......++.....+...++++... |++++..+.........++.+...+..++......+..+..
T Consensus        57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444445555444443 45555555555555555555555555555555555555555


Q ss_pred             hHhhHH
Q psy1411         189 SLKSLE  194 (270)
Q Consensus       189 ~l~~~~  194 (270)
                      ++..+.
T Consensus       137 ql~~LK  142 (154)
T 2ocy_A          137 QLKNLK  142 (154)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A

Probab=94.69  E-value=0.015  Score=31.86  Aligned_cols=28  Identities=7%  Similarity=0.279  Sum_probs=24.3

Q ss_pred             ChHHHHHHHHHHHhHhhHHhHHHHHHHH
Q psy1411           1 MDAIKKKMQAMKMEKDSAMDKADTCEGQ   28 (270)
Q Consensus         1 ~~~i~~kl~~l~~e~~~~~~~~~~~~~~   28 (270)
                      |+.||+||..|..+++.+++++..+...
T Consensus         6 i~avKkKiq~lq~q~d~aee~~~~~~~~   33 (37)
T 3azd_A            6 LEAVRRKIRSLQEQNYHLENEVARLKKL   33 (37)
T ss_dssp             CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999988776544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.06  E-value=1.7  Score=39.46  Aligned_cols=58  Identities=12%  Similarity=0.115  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHHH
Q psy1411         107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEV  164 (270)
Q Consensus       107 ~~~~~~~~~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~~  164 (270)
                      ..............+.++.++..++..+...+....++..+......+++.+...+.+
T Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~  583 (597)
T 3oja_B          526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR  583 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333344444444455555555555555555555555555555555566666555543

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.04  E-value=0.85  Score=30.58  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=14.6

Q ss_pred             HHHHHHHHHH-HHHHHHHHhHhhhhHHHHHhHHHHHHHH
Q psy1411         124 EERMDQLTNQ-LKEARLLAEDADAKSDEVSRKLAFVEDE  161 (270)
Q Consensus       124 e~~~~~le~~-l~~~~~~~~~~~~~~~e~~~~~~~l~~~  161 (270)
                      +.+++.|... |.+++.-+.........+..+...|...
T Consensus        53 e~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~q   91 (97)
T 2eqb_B           53 NKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQ   91 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444333 3333333333333333333333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.03  E-value=1.5  Score=30.28  Aligned_cols=95  Identities=21%  Similarity=0.168  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411           4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEE   83 (270)
Q Consensus         4 i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~   83 (270)
                      ++.+...|..+++.+..++......          .-..+..++..+..+...-..+...+-++++..+.+.+..-....
T Consensus         8 L~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~   77 (111)
T 2v66_B            8 LQADNQRLKYEVEALKEKLEHQYAQ----------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIV   77 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHh
Confidence            4556666777777766666553322          122233444444444444555555555566666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1411          84 DLEKSEERSGTATAKLAEASQAADE  108 (270)
Q Consensus        84 el~~~~~~l~~~~~~l~~~e~~~~~  108 (270)
                      .+..++..+..+-++..-++..+.+
T Consensus        78 SLeD~E~k~n~aiErnalLE~El~E  102 (111)
T 2v66_B           78 SLEDFEQRLNQAIERNAFLESELDE  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666555555555543

>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}

Probab=92.12  E-value=1.3  Score=28.16  Aligned_cols=47  Identities=17%  Similarity=0.235  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         224 RAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       224 ~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      .+..+..........|+.++.++...+.++..+..++|+++.++++|
T Consensus        31 ~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELnsm   77 (77)
T 3mtu_E           31 ALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNNM   77 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
Confidence            34455667777888899999999999999999999999999999875

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.04  E-value=1.6  Score=28.22  Aligned_cols=31  Identities=10%  Similarity=0.220  Sum_probs=17.8

Q ss_pred             hhhHHHHHhHHHHHHHHHHHHHHhhHhHHHH
Q psy1411         145 DAKSDEVSRKLAFVEDELEVAEDRVKSGDAK  175 (270)
Q Consensus       145 ~~~~~e~~~~~~~l~~~l~~~e~r~~~~~~~  175 (270)
                      ....+.+......+..+...|..|+..+=.+
T Consensus        47 ~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           47 QHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344555566666777777766665443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.54  E-value=0.64  Score=33.28  Aligned_cols=79  Identities=20%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhh-HHHHHhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhH
Q psy1411         115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAK-SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL  193 (270)
Q Consensus       115 ~l~~~~~~~e~~~~~le~~l~~~~~~~~~~~~~-~~e~~~~~~~l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~  193 (270)
                      .|...+..-......++.....+...++++... |++++..+.........++.+...+..++......+..+..+|..+
T Consensus        50 ~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L  129 (135)
T 2e7s_A           50 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNL  129 (135)
T ss_dssp             THHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444444444432 4555555555555555555555555555555555555554444443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=91.49  E-value=2.4  Score=29.22  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhHHHHHhHHHHHHHHHH
Q psy1411         128 DQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELE  163 (270)
Q Consensus       128 ~~le~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~l~  163 (270)
                      +.++..-......+.+...+|..+--+...|+.+++
T Consensus        66 DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~  101 (111)
T 2v66_B           66 DDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444444444444

>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*

Probab=90.93  E-value=1.3  Score=33.15  Aligned_cols=49  Identities=22%  Similarity=0.323  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy1411         222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY  270 (270)
Q Consensus       222 ~~~~~~~e~~~~~l~e~~~~le~~l~~~~~~~~~~~~eld~~~~~~~~~  270 (270)
                      +.-+..+...+..++..+..++.++.....++..+..++|++++++++|
T Consensus       127 reli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL~~~  175 (175)
T 3mud_A          127 RELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLELNNM  175 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3445577899999999999999999999999999999999999999876

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=89.74  E-value=3.9  Score=28.73  Aligned_cols=63  Identities=21%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          38 KVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLA  100 (270)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~  100 (270)
                      +++.+.++++.++...+..+.-.-.=+..-...+..++.|...-..++..+......++..++
T Consensus        15 ~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~   77 (167)
T 4gkw_A           15 DLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE   77 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence            344444444444444444444444444444444555555555445555555554444443333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.20  E-value=5.7  Score=28.61  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          46 TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA  102 (270)
Q Consensus        46 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~  102 (270)
                      ++.....+...+......+..+..++..+..++..+..++..+...+..++.++..+
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444444444444444444333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.07  E-value=4.1  Score=26.75  Aligned_cols=34  Identities=6%  Similarity=0.138  Sum_probs=15.6

Q ss_pred             hHHHHHHHHHHHhHhhHHhHHHHHHHHHHHHHHH
Q psy1411           2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLR   35 (270)
Q Consensus         2 ~~i~~kl~~l~~e~~~~~~~~~~~~~~l~~~~~~   35 (270)
                      ..++++|+.+..+...+....+.+...+..++..
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K   36 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREK   36 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555444444444444444433333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=87.91  E-value=4.5  Score=27.13  Aligned_cols=30  Identities=20%  Similarity=0.389  Sum_probs=12.4

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHhhHhHHHHH
Q psy1411         147 KSDEVSRKLAFVEDELEVAEDRVKSGDAKI  176 (270)
Q Consensus       147 ~~~e~~~~~~~l~~~l~~~e~r~~~~~~~~  176 (270)
                      .|....+.+-.+..++..+...+.-+..++
T Consensus        61 eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL   90 (96)
T 3q8t_A           61 EYSEFKRQQLELDDELKSVENQMRYAQMQL   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            343334444444444444444444433333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=85.61  E-value=1.4  Score=39.95  Aligned_cols=110  Identities=11%  Similarity=0.202  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA  105 (270)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~l~~~~~~l~~~e~~  105 (270)
                      +....++..++..++.+...++..+...+.....+..+...++.+...+..+...++....++........+.-..+...
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~  413 (575)
T 2i1j_A          334 EKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDE  413 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555555555555555555555555555444433333334444


Q ss_pred             HhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy1411         106 ADEANRMCKVLENRSQQDEERMDQLTNQLK  135 (270)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~e~~~~~le~~l~  135 (270)
                      +.++...+..+......-..+...+...+.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  443 (575)
T 2i1j_A          414 IRAKQEEVSRIQQEVELKDSETRRLQEEVE  443 (575)
T ss_dssp             ----------------------------CH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444433333444444433333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=85.47  E-value=6.4  Score=26.40  Aligned_cols=75  Identities=21%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411         158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTV  232 (270)
Q Consensus       158 l~~~l~~~e~r~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~  232 (270)
                      +..+-..+...+..++..-..+...+..+......++.....+......+.-.+..+...+..+..++......+
T Consensus        16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL   90 (96)
T 3q8t_A           16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444444444444444444444444444444444444444444444444433333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=85.03  E-value=6.3  Score=25.97  Aligned_cols=28  Identities=14%  Similarity=0.124  Sum_probs=10.9

Q ss_pred             HHHHHHhHhhHHhHHHHHHHHHHHHHHH
Q psy1411           8 MQAMKMEKDSAMDKADTCEGQAKDANLR   35 (270)
Q Consensus         8 l~~l~~e~~~~~~~~~~~~~~l~~~~~~   35 (270)
                      |..+..++..+...+...+....+++..
T Consensus        16 m~~~eeel~~lke~l~k~e~~rkele~~   43 (89)
T 3bas_A           16 MKEQLKQMDKMKEDLAKTERIKKELEEQ   43 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444433333333333333

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=83.30  E-value=9.7  Score=26.76  Aligned_cols=49  Identities=16%  Similarity=0.296  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1411          43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEER   91 (270)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~l~~r~~~le~el~~~~~~   91 (270)
                      +..-+..+++++..-.--++.+..+..+...+++.+......+.+...+
T Consensus        41 L~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q   89 (167)
T 4gkw_A           41 LREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ   89 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence            3333444445555555555666666677777777777666666554443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=83.30  E-value=7.1  Score=25.18  Aligned_cols=11  Identities=0%  Similarity=0.271  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q psy1411         254 KSLADEMDSTF  264 (270)
Q Consensus       254 ~~~~~eld~~~  264 (270)
                      ..+...++.++
T Consensus        65 ~~wq~Rl~~LL   75 (81)
T 2jee_A           65 NGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.99  E-value=28  Score=30.46  Aligned_cols=20  Identities=10%  Similarity=-0.065  Sum_probs=7.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q psy1411         123 DEERMDQLTNQLKEARLLAE  142 (270)
Q Consensus       123 ~e~~~~~le~~l~~~~~~~~  142 (270)
                      +...+..+...+..+...+.
T Consensus       454 ~~~~~~~~~~~~~~~~~~~~  473 (487)
T 3oja_A          454 LKKLNGEADLALASANATLQ  473 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHhcccHHH
Confidence            33333333333333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00