Psyllid ID: psy1416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC
Secondary Structure (PSIPRED)
cccccEEcccccccccccHHEEEEEEEEEEEEEEEccEEEEcccEEEEEEcccccccEEEEEEEHHHHHcccEEEEEEEcccccccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccEHHHHHHHHHcccccccHHHHHHHHcHccEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHcccHHHcccccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVnirkhttkpggkkkvCTVLnecawlgcgwmticpiiycwlfpsglrlvgnknddpqkkVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVnirkhttkpggkkkcc
Flexible Loop (DISEMBL)
MGIQLFETsakdninveEMFMAITNLVlrskkeqkerqvlnsdtvnirkhttkpggkkkvcTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVlrskkeqkerqvlnsdtvnirkhttkpggkkkcc
Low Complexity Region (SEG)
MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC
Disordered region (IsUnstruct)
************NINVEEMFMAITNLVL****************************KKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNK******KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL*********************************
Disordered Region (DISOPRED)
*GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL********************************KCC
Disordered Region (DISEMBL)
MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRK************
Disordered Region (DISPRO)
*GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q5U316	201	Ras-related protein Rab-3	yes	N/A	0.468	0.412	0.613	6e-21
Q6PHN9	201	Ras-related protein Rab-3	yes	N/A	0.468	0.412	0.613	6e-21
Q15286	201	Ras-related protein Rab-3	yes	N/A	0.468	0.412	0.613	6e-21
Q9FPJ4	202	Ras-related protein RABD2	yes	N/A	0.468	0.410	0.418	4e-09
Q05737	203	GTP-binding protein YPTM2	N/A	N/A	0.446	0.389	0.395	4e-08
Q5ZIT5	200	Ras-related protein Rab-1	no	N/A	0.463	0.41	0.418	4e-08
Q9SEH3	202	Ras-related protein RABD2	yes	N/A	0.293	0.257	0.557	5e-08
Q5R5U1	200	Ras-related protein Rab-1	no	N/A	0.463	0.41	0.418	5e-08
P61027	200	Ras-related protein Rab-1	no	N/A	0.463	0.41	0.418	5e-08
P61026	200	Ras-related protein Rab-1	no	N/A	0.463	0.41	0.418	5e-08

>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 5/88 (5%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
           LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct: 117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query: 151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
            K++Q   +D V + K++ +   KK+CC
Sbjct: 177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, Endosome (By similarity). Melanosome (By similarity). namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge.
Rattus norvegicus (taxid: 10116)

>sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 5/88 (5%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
           LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct: 117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query: 151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
            K++Q   +D V + K++ +   KK+CC
Sbjct: 177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, Endosome (By similarity). Melanosome (By similarity). namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge.

Mus musculus (taxid: 10090)

>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 5/88 (5%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
           LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct: 117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query: 151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
            K++Q   +D V + K++ +   KK+CC
Sbjct: 177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge.

Homo sapiens (taxid: 9606)

>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND   +KVV TE A+ FA+++GI   ETSAK+  NVEE FMA+T   ++++   +
Sbjct: 118 LVGNKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMT-AAIKTRMASQ 176

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
                   TV IR        +  CC
Sbjct: 177 PAGGAKPPTVQIRGQPVNQ--QSGCC 200

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 12/91 (13%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D    KVV TE A+ FA++MGI   ETSAK+  NV++ FMA+   +       K
Sbjct: 118 LVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASI-------K 170

Query: 152 ERQVLNSDTVNIRKHTTKPGG-----KKKCC 177
           +R        N R  T +  G     K  CC
Sbjct: 171 DRMASQPAAANARPATVQIRGQPVNQKTSCC 201

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L+GNK D   K+VV     ++ A + GI+ FETSAK NIN+E+ F+ +   +LR K   K
Sbjct: 119 LLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           E    NS+ V+I       G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Gallus gallus (taxid: 9031)

>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 37/52 (71%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           LVGNK D   +KVV TE A+ FA+++GI   ETSAK+  NVEE FMA+T  +
Sbjct: 118 LVGNKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAI 169

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L+GNK D   K+VV     ++ A + GI+ FETSAK NIN+E+ F+ +   +LR K   K
Sbjct: 119 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           E    NS+ V+I       G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Pongo abelii (taxid: 9601)

>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L+GNK D   K+VV     ++ A + GI+ FETSAK NIN+E+ F+ +   +LR K   K
Sbjct: 119 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           E    NS+ V+I       G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Mus musculus (taxid: 10090)

>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L+GNK D   K+VV     ++ A + GI+ FETSAK NIN+E+ F+ +   +LR K   K
Sbjct: 119 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           E    NS+ V+I       G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
383852954	201	PREDICTED: ras-related protein Rab-35-li	0.474	0.417	0.770	5e-28
307215038	189	Ras-related protein Rab-35 [Harpegnathos	0.474	0.444	0.770	5e-28
350417672	201	PREDICTED: ras-related protein Rab-35-li	0.474	0.417	0.770	7e-28
307176976	201	Ras-related protein Rab-35 [Camponotus f	0.474	0.417	0.758	1e-27
332030618	201	Ras-related protein Rab-35 [Acromyrmex e	0.474	0.417	0.758	1e-27
328790442	201	PREDICTED: ras-related protein Rab-35-li	0.474	0.417	0.758	1e-27
340728042	249	PREDICTED: ras-related protein Rab-35-li	0.474	0.337	0.770	1e-27
322790897	184	hypothetical protein SINV_05542 [Solenop	0.474	0.456	0.758	1e-27
193652503	202	PREDICTED: ras-related protein Rab-35-li	0.480	0.420	0.735	7e-27
240974176	199	zinc finger protein, putative [Ixodes sc	0.457	0.407	0.738	8e-27

>gi|383852954|ref|XP_003701990.1| PREDICTED: ras-related protein Rab-35-like [Megachile rotundata]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDNINV+EMFMAIT  VLR+KKE+K
Sbjct: 117 LVGNKNDSPNEKVVLTEDAQRFANQMGIQLFETSAKDNINVQEMFMAITRQVLRTKKERK 176

Query: 152 ERQVL-NSDTVNIRKHTTKPGGKKKCC 177
           ERQ +  S+TVN+RK T +   KKKCC
Sbjct: 177 ERQAIQTSETVNLRKSTKQH--KKKCC 201

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215038|gb|EFN89865.1| Ras-related protein Rab-35 [Harpegnathos saltator]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 74/87 (85%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  VLR+KKE K
Sbjct: 105 LVGNKNDAPNQKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITRQVLRTKKESK 164

Query: 152 ERQVLN-SDTVNIRKHTTKPGGKKKCC 177
           ERQ +  +DTVN+RK T +   +KKCC
Sbjct: 165 ERQAIQPNDTVNLRKSTRQH--RKKCC 189

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417672|ref|XP_003491537.1| PREDICTED: ras-related protein Rab-35-like [Bombus impatiens]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDNINV+EMFMAIT  VLR+KKE+K
Sbjct: 117 LVGNKNDAPNEKVVLTEDAQRFANQMGIQLFETSAKDNINVQEMFMAITRQVLRTKKERK 176

Query: 152 ERQVL-NSDTVNIRKHTTKPGGKKKCC 177
           ERQ +  S+TVN+RK T +   KKKCC
Sbjct: 177 ERQAIQTSETVNLRKSTKQH--KKKCC 201

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176976|gb|EFN66282.1| Ras-related protein Rab-35 [Camponotus floridanus]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  VLR+KKE+K
Sbjct: 117 LVGNKNDAPNQKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITRQVLRTKKERK 176

Query: 152 ERQVLNS-DTVNIRKHTTKPGGKKKCC 177
           ERQ + + +TVN+RK T +   +KKCC
Sbjct: 177 ERQAIQTNETVNLRKSTKQH--RKKCC 201

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030618|gb|EGI70306.1| Ras-related protein Rab-35 [Acromyrmex echinatior]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  VLR+KKE+K
Sbjct: 117 LVGNKNDAPNQKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITRQVLRTKKERK 176

Query: 152 ERQVLNS-DTVNIRKHTTKPGGKKKCC 177
           ERQ + + +TVN+RK T +   +KKCC
Sbjct: 177 ERQAIQTNETVNLRKSTKQH--RKKCC 201

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790442|ref|XP_003251420.1| PREDICTED: ras-related protein Rab-35-like [Apis mellifera] gi|380017688|ref|XP_003692779.1| PREDICTED: ras-related protein Rab-35-like [Apis florea]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDN+NV+EMFMAIT  VLR+KKE+K
Sbjct: 117 LVGNKNDAPNEKVVLTEDAQRFANQMGIQLFETSAKDNVNVQEMFMAITRQVLRTKKERK 176

Query: 152 ERQVL-NSDTVNIRKHTTKPGGKKKCC 177
           ERQ +  S+TVN+RK T +   KKKCC
Sbjct: 177 ERQAIQTSETVNLRKSTKQH--KKKCC 201

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728042|ref|XP_003402341.1| PREDICTED: ras-related protein Rab-35-like [Bombus terrestris]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDNINV+EMFMAIT  VLR+KKE+K
Sbjct: 165 LVGNKNDAPNEKVVLTEDAQRFANQMGIQLFETSAKDNINVQEMFMAITRQVLRTKKERK 224

Query: 152 ERQVL-NSDTVNIRKHTTKPGGKKKCC 177
           ERQ +  S+TVN+RK T +   KKKCC
Sbjct: 225 ERQAIQTSETVNLRKSTKQH--KKKCC 249

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790897|gb|EFZ15563.1| hypothetical protein SINV_05542 [Solenopsis invicta]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  VLR+KKE+K
Sbjct: 100 LVGNKNDAPNQKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITRQVLRTKKERK 159

Query: 152 ERQVLNS-DTVNIRKHTTKPGGKKKCC 177
           ERQ + + +TVN+RK T +   +KKCC
Sbjct: 160 ERQAIQTNETVNLRKSTKQH--RKKCC 184

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193652503|ref|XP_001951946.1| PREDICTED: ras-related protein Rab-35-like [Acyrthosiphon pisum]

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 74/87 (85%), Gaps = 2/87 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKND P +KVVLTEDAQRFA+QMGIQL+ETSAKDNINVE+MFM+IT  VLR+KKE K
Sbjct: 117 LVGNKNDAPDRKVVLTEDAQRFADQMGIQLYETSAKDNINVEQMFMSITKQVLRNKKETK 176

Query: 152 ERQVL-NSDTVNIRKHTTKPGGKKKCC 177
           ERQ   N+D VN+RK  +K G K+KCC
Sbjct: 177 ERQAHQNNDVVNLRKGHSK-GAKRKCC 202

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240974176|ref|XP_002401800.1| zinc finger protein, putative [Ixodes scapularis] gi|215491064|gb|EEC00705.1| zinc finger protein, putative [Ixodes scapularis] gi|442756045|gb|JAA70182.1| Putative gtpase rab1/ypt1 small g protein superfamily [Ixodes ricinus]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 73/88 (82%), Gaps = 7/88 (7%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKNDDP +KVVLTEDAQRFA+QMGIQLFETSAK+NINVEEMF AIT +VL+SKKEQK
Sbjct: 117 LVGNKNDDPSRKVVLTEDAQRFADQMGIQLFETSAKENINVEEMFNAITRMVLKSKKEQK 176

Query: 152 ERQVLNSDTVNIRKHTTKPGG--KKKCC 177
           ERQ +  D + +     KPGG  KKKCC
Sbjct: 177 ERQQVPDDKLRL-----KPGGQKKKKCC 199

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
UNIPROTKB|F1MSJ9	201	RAB35 "Uncharacterized protein	0.468	0.412	0.613	3.8e-23
UNIPROTKB|E2RLP0	201	RAB35 "Uncharacterized protein	0.468	0.412	0.613	3.8e-23
UNIPROTKB|J9P6H6	201	RAB35 "Uncharacterized protein	0.468	0.412	0.613	3.8e-23
UNIPROTKB|F5H157	185	RAB35 "Ras-related protein Rab	0.468	0.448	0.613	3.8e-23
UNIPROTKB|Q15286	201	RAB35 "Ras-related protein Rab	0.468	0.412	0.613	3.8e-23
UNIPROTKB|F2Z4Z0	201	RAB35 "Uncharacterized protein	0.468	0.412	0.613	3.8e-23
MGI|MGI:1924657	201	Rab35 "RAB35, member RAS oncog	0.468	0.412	0.613	3.8e-23
RGD|1306362	201	Rab35 "RAB35, member RAS oncog	0.468	0.412	0.613	3.8e-23
ZFIN|ZDB-GENE-040801-62	201	rab35 "RAB35, member RAS oncog	0.468	0.412	0.602	1e-22
UNIPROTKB|F1N908	201	RAB35 "Uncharacterized protein	0.468	0.412	0.625	1e-22

UNIPROTKB|F1MSJ9 RAB35 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IEA

GO:0045171 "intercellular bridge" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E2RLP0 RAB35 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9P6H6 RAB35 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F5H157 RAB35 "Ras-related protein Rab-35" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   101 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 160

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   161 AKQQQQQQNDVVKLTKNSKR---KKRCC 185

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q15286 RAB35 "Ras-related protein Rab-35" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008104 "protein localization" evidence=IMP

GO:0045171 "intercellular bridge" evidence=IDA

GO:0005905 "coated pit" evidence=IDA

GO:0031253 "cell projection membrane" evidence=IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|F2Z4Z0 RAB35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IEA

GO:0045171 "intercellular bridge" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:1924657 Rab35 "RAB35, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005905 "coated pit" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008104 "protein localization" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0019003 "GDP binding" evidence=ISO

GO:0031253 "cell projection membrane" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045171 "intercellular bridge" evidence=ISO

GO:0045334 "clathrin-coated endocytic vesicle" evidence=ISO

RGD|1306362 Rab35 "RAB35, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0000910 "cytokinesis" evidence=IEA;ISO

GO:0005525 "GTP binding" evidence=ISO;ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008104 "protein localization" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA;ISO

GO:0019003 "GDP binding" evidence=ISO;ISS

GO:0031253 "cell projection membrane" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045171 "intercellular bridge" evidence=IEA;ISO

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IEA;ISO

ZFIN|ZDB-GENE-040801-62 rab35 "RAB35, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 53/88 (60%), Positives = 67/88 (76%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP  KVV T DAQ+FA QMGI LFETSAK+N+NVEEMF  IT LVLR+KKE  
Sbjct:   117 LVGNKNDDPNSKVVETNDAQKFAEQMGISLFETSAKENVNVEEMFNCITELVLRAKKESV 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D + +++++ +   KKKCC
Sbjct:   177 AKQQQQQQNDVIKLKQNSKR---KKKCC 201

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1N908 RAB35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/88 (62%), Positives = 68/88 (77%)

Query:    92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
             LVGNKNDDP++KVV TEDA +FA QM IQLFETSAK+NINVEEMF  IT LVLR+KKE  
Sbjct:   117 LVGNKNDDPERKVVETEDAYKFAGQMEIQLFETSAKENINVEEMFNCITELVLRAKKENL 176

Query:   151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
              K++Q   +D V + K++ +   KK+CC
Sbjct:   177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0045171 "intercellular bridge" evidence=IEA

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PHN9	RAB35_MOUSE	No assigned EC number	0.6136	0.4689	0.4129	yes	N/A
Q5U316	RAB35_RAT	No assigned EC number	0.6136	0.4689	0.4129	yes	N/A
Q15286	RAB35_HUMAN	No assigned EC number	0.6136	0.4689	0.4129	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	177
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-27
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-16
pfam00071	162	pfam00071, Ras, Ras family	1e-15
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-15
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	7e-15
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	6e-14
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	7e-14
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	7e-13
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-12
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	4e-12
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	6e-12
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	7e-12
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-11
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-11
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-10
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-10
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-10
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-09
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-09
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	5e-09
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-08
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-08
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-07
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-07
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-07
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-07
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	6e-07
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	9e-07
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-06
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-06
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-06
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-06
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	6e-06
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	6e-06
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	7e-06
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-06
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	8e-06
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-05
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-05
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-05
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-05
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-05
pfam00071	162	pfam00071, Ras, Ras family	4e-05
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	5e-05
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-04
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-04
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-04
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-04
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-04
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-04
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-04
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-04
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-04
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-04
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	6e-04
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-04
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	0.001
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	0.001
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	0.002
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	0.002
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	0.003
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	0.004

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  100 bits (250), Expect = 6e-27
 Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 3/87 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKNDDP++KVV TEDA +FA QMGI LFETSAK+NINVEEMF  IT LVLR+KK+  
Sbjct: 115 LVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNL 174

Query: 152 ER-QVLNSDTVNIRKHTTKPGGKKKCC 177
            + Q    + V      +K   KK+CC
Sbjct: 175 AKQQQQQQNDVVKLPKNSK--RKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 72.5 bits (179), Expect = 1e-16
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           LVGNK+D   ++ V TE+AQ+FA + G+  FETSAK   NV+E F ++ 
Sbjct: 110 LVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 69.8 bits (172), Expect = 1e-15
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK D   ++VV TE+ +  A ++G+   ETSAK N NVEE F  +   +L+
Sbjct: 109 LVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK+D  +++ V  E+A+ FA + G+  FETSAK N NVEE F  +   +L+
Sbjct: 110 LVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 68.1 bits (167), Expect = 7e-15
 Identities = 26/54 (48%), Positives = 36/54 (66%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK D  +K+VV  E+ +  A + GI+  ETSAK NINVEE F+ +   +L+
Sbjct: 113 LVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 65.3 bits (160), Expect = 6e-14
 Identities = 19/53 (35%), Positives = 35/53 (66%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
           +VGNK D  +++VV   +A+ +A  +G + FETSAK    +EE+F+++   ++
Sbjct: 110 IVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           LVGNK D   KKVV   +A+ FA+++GI   ETSAK+  NVEE FM + 
Sbjct: 112 LVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMA 160

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           L GNK D   K+ V TE+AQ +A++ G+   ETSAK   NV E+F  I
Sbjct: 111 LAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEI 158

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK+D    + V TE+A+ FA + G+   ETSA D  NVEE F  +
Sbjct: 113 LVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   ++VV TE+ +  A Q G    ETSAK+ +NV+E F
Sbjct: 110 LVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   ++VV TE+ +  A Q G    ETSAK+ INV+E F
Sbjct: 112 LVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 59.8 bits (146), Expect = 7e-12
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           LVGNK D   ++ V TE+ +  A + G    ETSAK NIN++E+F  +   +
Sbjct: 109 LVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           ++GNK D  +K+ V T+ AQ++    G I  FETSAK+ INV++ F  I  L L  +KE
Sbjct: 114 VLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           LVGNK D   ++VV  E  ++ A+Q+G + FE SAK+NINV+++F  + +++
Sbjct: 111 LVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKER-QVLNSDTVNIRKHTTKPGGKKK 59
           MGI LFETSAK+NINVEEMF  IT LVLR+KK+   + Q    + V      +K   +  
Sbjct: 140 MGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 86  FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           FP  + LVGNK D   ++ V  E+ Q  A Q+ I   ETSAKD +NV++ F  +  ++
Sbjct: 108 FP--MILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   K+ V TE+ ++ A +      ETSAK   NV+++F
Sbjct: 110 LVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLF 154

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 92  LVGNKND-DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           L+ NK D   ++     E   +F  + G I  FETSAK+NIN+EE    +   +L++ K 
Sbjct: 115 LLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKG 174

Query: 150 -QKERQVLNSDTVNIRKHTTKPGGKKKCC 177
            Q      ++  V   K  T     K CC
Sbjct: 175 LQSPEPDEDN--VIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D   ++ V  E+ ++ A   G    E+SAK+N NVEE F  +   + + +    
Sbjct: 111 LVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLP 170

Query: 152 ERQ 154
             Q
Sbjct: 171 PGQ 173

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 52.9 bits (127), Expect = 5e-09
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           + L+GNK D   ++VV  ED +R A + G+   ETSAK  +NVE  F A+        KE
Sbjct: 109 IMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA-------KE 161

Query: 150 QKERQVLNSD--TVNIRKHTTKPGGKKKCC 177
            K R V   D     I+ +  K      CC
Sbjct: 162 LKHRSVEQPDEPKFKIQDYVEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           L+GNK D   ++ V  E+ + FA + G+   ETSAK   NVEE F+     +  
Sbjct: 114 LIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           +VGNK D   ++ V TE+    A ++G +  E SAK N+NVE  F      ++R+ ++Q+
Sbjct: 111 IVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYT----LVRALRQQR 166

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKC 176
           +           +K   K   K+KC
Sbjct: 167 QGGQGPKGGPTKKKE--KK--KRKC 187

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D    + V T   Q  A   GI   ETSAK    VEE F
Sbjct: 111 LVGNKCDLA-ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 23/45 (51%), Positives = 26/45 (57%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   ++VV  E  Q  A Q G    ETSAK  INV E+F
Sbjct: 111 LVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITN 141
           L+GNK D  +++ VL E+A   A   GI  + ETSAK++ NVEE F+ +  
Sbjct: 113 LIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
           L+GNK D+ QK+ V  E   + A + G+  FETSA  N N++E F  +T LVL++
Sbjct: 110 LIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL 142
           LVGNK D+   + V + +    A        ETSAK N NV+E+F  + NL
Sbjct: 113 LVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELLNL 163

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 46.9 bits (111), Expect = 9e-07
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
           L+GNK D   ++ V TE+ ++FA + G+   E SAK   NVEE F+
Sbjct: 116 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161

Length = 210

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   +  V  E+ Q+FA +  +   ETSAK  I V++ F
Sbjct: 111 LVGNKIDKENR-EVTREEGQKFARKHNMLFIETSAKTRIGVQQAF 154

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           L LVGNK D   K+ V  E+A   A Q G+   ETSAK   NV+++F
Sbjct: 108 LLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   ++ V T + Q  A   GI   ETSAK  +NV+E F  +   + +  KE  
Sbjct: 115 LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDM 174

Query: 152 ERQ 154
             Q
Sbjct: 175 PSQ 177

Length = 189

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           LVG+K D   ++ V  E+A++ A  +G++  ETSA+   NVEE F  +T
Sbjct: 114 LVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
           L LVGNK D    + +  +  ++FA Q+ G++  E SAKDN NV+E+F+ + + +L+   
Sbjct: 108 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMP 167

Query: 149 EQKERQVLNSDTVNIRKHTTKP 170
               R  L++  ++++     P
Sbjct: 168 LDILRNELSNSILSLQPEPEIP 189

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLR 29
           GI+  ETSAK NINVEE F+ +   +L+
Sbjct: 139 GIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           +  NK D  + + V  ++ + +A   G + FETSA     V EMF  + + ++ 
Sbjct: 115 VCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 92  LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
           LVGNK D +  ++V   E A RFA + G+   ETSA    NVEE F+
Sbjct: 110 LVGNKKDLEDDREVTFLE-ASRFAQENGLLFLETSALTGENVEEAFL 155

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
           + GNK+D    + V  ED Q  A + G+   ETSA +  NVE+ F  I   +    SKK 
Sbjct: 122 MAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKA 181

Query: 150 QKERQVLNSDTV-----NIRKHTTKPGGKKKCC 177
              ++   +  +      I    T    K+ CC
Sbjct: 182 LAAQEAAANSGLPGQGTTINVADTSGNNKRGCC 214

Length = 216

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 3   IQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
           I  FETSAK+ INV++ F  I  L L  +KE
Sbjct: 142 IPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D  +++ V  + A+ F++   +   ETSAK++ NVE++F+ +
Sbjct: 117 LVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 65  NECAWLGC-GWMT-ICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLF 122
           +E ++L    WM+ +    YC      + L+GNK D P ++ V    A+  A++ GI  F
Sbjct: 98  SEQSFLNVRNWMSQLQAHAYCE--NPDIVLIGNKADLPDQREVSERQARELADKYGIPYF 155

Query: 123 ETSAKDNINVEEMFMAITNLVLR 145
           ETSA    NVE+    + +L+++
Sbjct: 156 ETSAATGQNVEKAVETLLDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 102 KKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTV 161
           K  +L ED    A +M    FETSAK   NV+E+F  + NLVL       +R   N    
Sbjct: 151 KYKMLDEDLSPAAEKM---CFETSAKTGYNVDELFEYLFNLVL--PLILAQRAEANRTQG 205

Query: 162 NIRKHTTKPGGKKKCC 177
            +     K   K KCC
Sbjct: 206 TVNLPNPKR-SKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
           L+GNK D   ++ V  E+A++FA++ G+   E SAK   NVE+ F+     + ++
Sbjct: 112 LIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   ++ V + + +  A + G    ETSAK    V E+F  I
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
           +G+   ETSAK N NVEE F  +   +L+
Sbjct: 134 LGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD---NINVEEMFM 137
           LVGNK D  ++  V T+ AQRFA+   + LFETSAKD   N +VE +FM
Sbjct: 114 LVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFM 162

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 79  PIIYCWLFPSGLRLVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
           P++ C          GNK D D  ++V   E  Q          FE SAK N N++EMF 
Sbjct: 115 PMVIC----------GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFR 164

Query: 138 AITNL 142
           A+ +L
Sbjct: 165 ALFSL 169

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLR 29
           G+  FETSAK N NVEE F  +   +L+
Sbjct: 136 GLPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNIN-VEEMFMAITNLVLR 145
           LVGNK D    + V TE+ Q+ A ++G   FE SA +N   V+ +F  +   V R
Sbjct: 112 LVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 92  LVGNKND----DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           L G K+D    D   + V   D Q FA+++  Q FETS+K   NV+E+F  +
Sbjct: 110 LCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 2   GIQLFETSAKDNINVEEMFMAIT 24
           G+  FETSAK   NV+E F ++ 
Sbjct: 136 GLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 3   IQLFETSAKDNINVEEMFMAITNLVLRSKKE-QKERQVLNSDTVNIRKHTTKPGGKKKVC 61
           I  FETSAK+NIN+EE    +   +L++ K  Q      ++  V   K  T     K  C
Sbjct: 144 IGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEPDEDN--VIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   ++ V    AQ  A    ++ +ETSAK+ +  E  F+++
Sbjct: 115 LVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 29/99 (29%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMGIQLF-ETSAKDNINVEEMFMA 138
           LVG K D                + V  E  +  A  +G   + E SAK   NV+E+F A
Sbjct: 113 LVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDA 172

Query: 139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177
             N+ L        ++                  KKKC 
Sbjct: 173 AINVALSKSGRAARKKK----------------KKKKCV 195

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
           LVGN+     K+ V TE AQ +A + G+  FE S   N N+ E F  +  +VL
Sbjct: 115 LVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LV  K D   + V+  E+A+  A ++ + LF TS KD+ NV E+F
Sbjct: 111 LVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITN 141
           LVGNK D  +++ V          ++ G+ +FE SAK    V+E+F  +  
Sbjct: 111 LVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAI 139
           LVGNK D   ++VV  E+ Q  A Q G     ETSAK  INV+E+F  +
Sbjct: 111 LVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDL 159

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVL 28
           G + FETSAK    +EE+F+++   ++
Sbjct: 136 GAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           L GNK D   +KV        F  +  +Q +E SAK N N E+ F+ +
Sbjct: 109 LCGNKVDIKDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWL 154

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           L LVGNK D  Q++ V TE+ +  A +     FETSA     +++ F  +   + R +  
Sbjct: 110 LVLVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESM 169

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMF 136
           LVGNK D    + V  ED    + Q G +  +ETSA+   NV+E+F
Sbjct: 111 LVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLV 27
           G    ETSAK NIN++E+F  +   +
Sbjct: 135 GCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMA 138
           ++GNK D P+++V  TE+AQ +    G    FETSAKD  NV   F  
Sbjct: 119 ILGNKIDIPERQVS-TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 92  LVGNKND-----DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           LVG K D      P+++  +T+ A+++A  M   L   S   +INV+++F  +   V
Sbjct: 109 LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKV 165

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 12/57 (21%)

Query: 92  LVGNKND-----------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMF 136
           LVG K D           + ++K +  E+ ++ A ++G ++  E SA     ++E+F
Sbjct: 109 LVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG0084|consensus	205		99.9
KOG0078|consensus	207		99.9
KOG0092|consensus	200		99.89
KOG0098|consensus	216		99.88
KOG0091|consensus	213		99.88
KOG0079|consensus	198		99.87
KOG0094|consensus	221		99.85
KOG0088|consensus	218		99.85
KOG0093|consensus	193		99.85
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.84
KOG0087|consensus	222		99.84
KOG0080|consensus	209		99.83
KOG0081|consensus	219		99.81
KOG0394|consensus	210		99.81
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.8
KOG0083|consensus	192		99.79
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.79
KOG0086|consensus	214		99.79
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.78
KOG0097|consensus	215		99.78
PTZ00099	176	rab6; Provisional	99.75
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.75
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.75
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.75
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.74
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.73
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.73
PLN03110	216	Rab GTPase; Provisional	99.72
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.72
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.72
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.72
KOG0395|consensus	196		99.71
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.71
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.7
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.69
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.69
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.69
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.69
PLN03108	210	Rab family protein; Provisional	99.68
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.68
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.67
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.67
PTZ00369	189	Ras-like protein; Provisional	99.67
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.66
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.66
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.65
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.63
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.63
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.62
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.62
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.62
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.62
KOG0095|consensus	213		99.61
PLN03118	211	Rab family protein; Provisional	99.61
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.61
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.61
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.6
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.6
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.59
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.59
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.59
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.58
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.58
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.58
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.57
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.57
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.57
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.56
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.56
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.55
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.55
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.55
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.54
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.53
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.53
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.52
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.52
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.51
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.51
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.5
KOG0393|consensus	198		99.5
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.5
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.5
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.49
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.47
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.45
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.44
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.41
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.41
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.4
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.4
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.39
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.39
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.38
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.37
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.36
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.33
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.32
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.32
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.31
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.3
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.27
KOG4252|consensus	246		99.27
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.27
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.26
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.25
PLN00223	181	ADP-ribosylation factor; Provisional	99.23
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.22
PTZ00133	182	ADP-ribosylation factor; Provisional	99.21
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.2
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.2
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.2
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.2
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.19
PRK12299	335	obgE GTPase CgtA; Reviewed	99.15
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.13
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.1
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.1
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.1
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.08
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.05
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.01
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.01
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.99
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.97
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.95
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.94
KOG3883|consensus	198		98.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.89
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.88
KOG4423|consensus	229		98.86
PRK04213	201	GTP-binding protein; Provisional	98.82
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.8
KOG0078|consensus	207		98.79
KOG0096|consensus	216		98.79
KOG0091|consensus	213		98.78
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.75
PLN00023	334	GTP-binding protein; Provisional	98.74
KOG0084|consensus	205		98.71
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.71
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.7
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.69
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.69
KOG0092|consensus	200		98.68
PRK12297	424	obgE GTPase CgtA; Reviewed	98.65
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.65
KOG0394|consensus	210		98.62
PRK03003	472	GTP-binding protein Der; Reviewed	98.61
COG1100	219	GTPase SAR1 and related small G proteins [General	98.56
KOG0083|consensus	192		98.56
KOG1707|consensus	625		98.49
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.48
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.47
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.45
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.45
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.45
PRK15494	339	era GTPase Era; Provisional	98.44
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.39
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.39
PRK12298	390	obgE GTPase CgtA; Reviewed	98.38
KOG0097|consensus	215		98.37
KOG0098|consensus	216		98.34
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.34
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.33
PRK00098	298	GTPase RsgA; Reviewed	98.32
PRK12288	347	GTPase RsgA; Reviewed	98.32
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.3
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.3
PRK12296	500	obgE GTPase CgtA; Reviewed	98.29
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.28
PRK11058	426	GTPase HflX; Provisional	98.28
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.28
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.26
KOG1673|consensus	205		98.25
KOG0080|consensus	209		98.25
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.24
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.21
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.2
PRK03003	472	GTP-binding protein Der; Reviewed	98.2
PRK12289	352	GTPase RsgA; Reviewed	98.2
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.18
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.16
cd00881	189	GTP_translation_factor GTP translation factor fami	98.13
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.12
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.11
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.1
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.09
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.03
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.02
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.02
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.98
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.96
PRK13796	365	GTPase YqeH; Provisional	97.94
PRK00089	292	era GTPase Era; Reviewed	97.93
KOG0094|consensus	221		97.93
KOG0086|consensus	214		97.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	97.91
KOG0081|consensus	219		97.91
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.9
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.88
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.87
PRK00093	435	GTP-binding protein Der; Reviewed	97.86
PRK04000	411	translation initiation factor IF-2 subunit gamma;	97.81
KOG0087|consensus	222		97.81
KOG0088|consensus	218		97.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.78
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.77
PRK05306	787	infB translation initiation factor IF-2; Validated	97.75
PRK05433	600	GTP-binding protein LepA; Provisional	97.74
CHL00189	742	infB translation initiation factor 2; Provisional	97.72
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.71
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.7
PRK00093	435	GTP-binding protein Der; Reviewed	97.69
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.68
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.66
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.66
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.65
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.64
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.62
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	97.58
PLN03118	211	Rab family protein; Provisional	97.57
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	97.56
PLN03108	210	Rab family protein; Provisional	97.55
PTZ00099	176	rab6; Provisional	97.55
KOG0395|consensus	196		97.54
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.54
PLN03110	216	Rab GTPase; Provisional	97.52
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.52
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.51
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.5
KOG0073|consensus	185		97.47
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	97.44
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.44
KOG0095|consensus	213		97.39
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.39
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.24
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.19
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.18
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.18
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.11
KOG3905|consensus	473		97.08
PRK14845	1049	translation initiation factor IF-2; Provisional	97.03
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.01
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	96.96
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	96.96
KOG1489|consensus	366		96.95
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.88
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	96.86
PRK12317	425	elongation factor 1-alpha; Reviewed	96.84
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	96.83
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.82
PRK09866	741	hypothetical protein; Provisional	96.77
COG0536	369	Obg Predicted GTPase [General function prediction	96.75
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	96.75
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	96.7
COG2262	411	HflX GTPases [General function prediction only]	96.67
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	96.66
PRK01889	356	GTPase RsgA; Reviewed	96.66
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	96.62
PRK04004	586	translation initiation factor IF-2; Validated	96.59
KOG0462|consensus	650		96.58
KOG0070|consensus	181		96.58
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	96.58
PRK13768	253	GTPase; Provisional	96.53
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.49
KOG0076|consensus	197		96.48
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	96.48
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.48
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	96.45
COG1162	301	Predicted GTPases [General function prediction onl	96.38
KOG4423|consensus	229		96.33
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	96.3
COG1159	298	Era GTPase [General function prediction only]	96.24
PRK12736	394	elongation factor Tu; Reviewed	96.2
KOG0072|consensus	182		96.19
COG1160	444	Predicted GTPases [General function prediction onl	96.16
COG0486	454	ThdF Predicted GTPase [General function prediction	96.05
KOG0075|consensus	186		96.02
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	96.01
COG2229	187	Predicted GTPase [General function prediction only	95.96
PLN00043	447	elongation factor 1-alpha; Provisional	95.96
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	95.78
TIGR00485	394	EF-Tu translation elongation factor TU. This align	95.76
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.7
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	95.45
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	95.17
KOG1145|consensus	683		95.13
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	95.09
COG1163	365	DRG Predicted GTPase [General function prediction	95.02
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	95.0
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	94.91
PRK12735	396	elongation factor Tu; Reviewed	94.75
COG0218	200	Predicted GTPase [General function prediction only	94.7
KOG1707|consensus	625		94.45
KOG0705|consensus	749		94.42
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	94.39
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	94.38
KOG1532|consensus	366		94.36
PRK10218	607	GTP-binding protein; Provisional	94.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	94.21
COG1160	444	Predicted GTPases [General function prediction onl	94.17
KOG1490|consensus	620		94.04
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	93.52
KOG1423|consensus	379		93.15
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	93.12
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	92.91
KOG4252|consensus	246		92.78
cd04105	203	SR_beta Signal recognition particle receptor, beta	92.7
PRK09602	396	translation-associated GTPase; Reviewed	92.32
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	92.23
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	91.52
KOG0071|consensus	180		91.45
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	91.25
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	91.07
CHL00071	409	tufA elongation factor Tu	90.93
PTZ00141	446	elongation factor 1- alpha; Provisional	89.61
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	89.39
PRK15494	339	era GTPase Era; Provisional	88.88
KOG0466|consensus	466		88.59
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	88.39
COG5258	527	GTPBP1 GTPase [General function prediction only]	88.08
PRK00049	396	elongation factor Tu; Reviewed	87.98
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	87.91
COG1084	346	Predicted GTPase [General function prediction only	87.69
PLN03126	478	Elongation factor Tu; Provisional	87.2
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	87.14
COG3276	447	SelB Selenocysteine-specific translation elongatio	87.11
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	86.95
PLN03127	447	Elongation factor Tu; Provisional	86.8
KOG0461|consensus	522		86.58
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	86.3
PRK12297	424	obgE GTPase CgtA; Reviewed	86.07
PRK04000	411	translation initiation factor IF-2 subunit gamma;	85.89
PRK12740	668	elongation factor G; Reviewed	85.08
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	84.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	84.28
PRK12296	500	obgE GTPase CgtA; Reviewed	83.95
PRK00741	526	prfC peptide chain release factor 3; Provisional	83.86
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	83.83
KOG4273|consensus	418		83.66
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	83.65
PRK13351	687	elongation factor G; Reviewed	83.48
PRK11058	426	GTPase HflX; Provisional	83.43
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	83.41
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	83.4
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	83.28
KOG0096|consensus	216		82.7
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	82.56
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	82.23
KOG1144|consensus	1064		81.75
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	81.52
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	81.45
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	81.25
COG1100	219	GTPase SAR1 and related small G proteins [General	80.31

>KOG0084|consensus

Probab=99.90  E-value=6.2e-24  Score=155.33  Aligned_cols=115  Identities=29%  Similarity=0.431  Sum_probs=93.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~  137 (177)
                      .+|||+++||.++. |+.+++  +-...++|++|||||+||.+.|+|+.++++.||.+++++ |+|||||++.||+++|.
T Consensus        88 vyDiT~~~SF~~v~~Wi~Ei~--~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~  165 (205)
T KOG0084|consen   88 VYDITKQESFNNVKRWIQEID--RYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL  165 (205)
T ss_pred             EEEcccHHHhhhHHHHHHHhh--hhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence            49999999999998 999984  223357999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416         138 AITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC  177 (177)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC  177 (177)
                      .|+..+..++.............+.+...+. ....++||
T Consensus       166 ~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~-~~~~~~~C  204 (205)
T KOG0084|consen  166 TLAKELKQRKGLHVKWSTASLESVQLKGTPV-KKSNGGCC  204 (205)
T ss_pred             HHHHHHHHhcccCCCCCcCCCCceeeCCCCc-ccccCCCC
Confidence            9999998886554332223455666666333 23445577

>KOG0078|consensus

Probab=99.90  E-value=1.4e-23  Score=155.27  Aligned_cols=88  Identities=32%  Similarity=0.431  Sum_probs=80.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+||||+.||+++. |+..+.+. . .+++|++|||||+||+.+|+|+.+.++++|.++|+.|+|||||+|.||+++|..
T Consensus        91 vyDitne~Sfeni~~W~~~I~e~-a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~  168 (207)
T KOG0078|consen   91 VYDITNEKSFENIRNWIKNIDEH-A-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLS  168 (207)
T ss_pred             EEEccchHHHHHHHHHHHHHHhh-C-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHH
Confidence            49999999999998 99988532 2 348999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      |++.+..+...
T Consensus       169 La~~i~~k~~~  179 (207)
T KOG0078|consen  169 LARDILQKLED  179 (207)
T ss_pred             HHHHHHhhcch
Confidence            99999986544

>KOG0092|consensus

Probab=99.89  E-value=1e-23  Score=153.69  Aligned_cols=115  Identities=28%  Similarity=0.397  Sum_probs=91.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|||+.+||..+. |+.++.  ....+++.|.|||||+||.+.|+|..+++..+|+..|..|||||||||.||+++|..
T Consensus        84 vYDit~~~SF~~aK~WvkeL~--~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQ--RQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHH--hhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            49999999999998 999984  233378999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416         139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC  177 (177)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC  177 (177)
                      |++.++.............+..+.+..+. .+...++||
T Consensus       162 Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C  199 (200)
T KOG0092|consen  162 IAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCC  199 (200)
T ss_pred             HHHhccCccccccccccccccceecccCC-CCcCcCCcC
Confidence            99999877544332112222455555442 223455666

>KOG0098|consensus

Probab=99.88  E-value=3.8e-23  Score=149.93  Aligned_cols=92  Identities=25%  Similarity=0.311  Sum_probs=83.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+|||+++||+++. ||.++.+  ...+++.|+|+|||+||+..|.|+.+|++.||+++|..|+||||+++.||+++|..
T Consensus        85 Vydit~r~sF~hL~~wL~D~rq--~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   85 VYDITRRESFNHLTSWLEDARQ--HSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEccchhhHHHHHHHHHHHHH--hcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            59999999999998 9988742  22468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1416         139 ITNLVLRSKKEQKER  153 (177)
Q Consensus       139 ~~~~~~~~~~~~~~~  153 (177)
                      .+..|++..+.....
T Consensus       163 ta~~Iy~~~q~g~~~  177 (216)
T KOG0098|consen  163 TAKEIYRKIQDGVFD  177 (216)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999987765544

>KOG0091|consensus

Probab=99.88  E-value=2.1e-22  Score=143.29  Aligned_cols=92  Identities=25%  Similarity=0.350  Sum_probs=82.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+||||++||+++. |+.+....-..+..+.+.|||.|+||...|+|+.++|+.+|..+|+.|+||||++|.||+++|..
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m  167 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM  167 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence            49999999999998 99887433444567888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKEQK  151 (177)
Q Consensus       139 ~~~~~~~~~~~~~  151 (177)
                      +++.+...+++..
T Consensus       168 laqeIf~~i~qGe  180 (213)
T KOG0091|consen  168 LAQEIFQAIQQGE  180 (213)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999887644

>KOG0079|consensus

Probab=99.87  E-value=2e-22  Score=141.33  Aligned_cols=111  Identities=44%  Similarity=0.621  Sum_probs=92.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+||||.+||.++. |++++   +..++.+|-||||||.|+.++|.|..+++..||...|+.+||||||.+.||+.+|..
T Consensus        87 VYDVTn~ESF~Nv~rWLeei---~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEI---RNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEECcchhhhHhHHHHHHHH---HhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            49999999999998 99877   334568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416         139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC  177 (177)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC  177 (177)
                      |.+.+++.+... .........+.+.+++.   .+++||
T Consensus       164 it~qvl~~k~r~-~~~~~r~~~~~l~~n~~---~~~k~c  198 (198)
T KOG0079|consen  164 ITKQVLQAKLRE-SVEQQRADAVSLKDNSK---STKKCC  198 (198)
T ss_pred             HHHHHHHHHHhh-cHHHHhhcceEeccCCC---ccccCC
Confidence            999998876221 12233456677776643   345788

>KOG0094|consensus

Probab=99.85  E-value=8.3e-22  Score=144.00  Aligned_cols=88  Identities=25%  Similarity=0.283  Sum_probs=79.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+||||+.||++.. |++++.. .+...++.|+|||||.||.++|+|+.+++...|+++++.|+|||||.|+||.++|..
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~-e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRR-ERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHh-ccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            39999999999998 9999853 334456889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         139 ITNLVLRSKK  148 (177)
Q Consensus       139 ~~~~~~~~~~  148 (177)
                      ++..+.....
T Consensus       180 Iaa~l~~~~~  189 (221)
T KOG0094|consen  180 IAAALPGMEV  189 (221)
T ss_pred             HHHhccCccc
Confidence            9998887643

>KOG0088|consensus

Probab=99.85  E-value=1.1e-21  Score=139.13  Aligned_cols=88  Identities=25%  Similarity=0.399  Sum_probs=79.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+||||++||..+. |+.++..-  ....+-+++||||+||+.+|+|+.+++..+|+..|+.|+|||||.+.||.++|..
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~m--lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRTM--LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHHH--hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            59999999999997 99888433  3357889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +...+++....
T Consensus       170 Lt~~MiE~~s~  180 (218)
T KOG0088|consen  170 LTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHhhh
Confidence            99999887543

>KOG0093|consensus

Probab=99.85  E-value=1e-21  Score=137.53  Aligned_cols=88  Identities=33%  Similarity=0.596  Sum_probs=81.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      |+|+||.+||.++. |.-.+. .... .++|+|||||||||+++|.|+.+.+..++.++|..|||+|||.+.||+++|..
T Consensus       100 myDitNeeSf~svqdw~tqIk-tysw-~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~  177 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIK-TYSW-DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER  177 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHhe-eeec-cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence            69999999999998 998774 4443 58999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      ++..|.+++..
T Consensus       178 lv~~Ic~kmse  188 (193)
T KOG0093|consen  178 LVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHhhh
Confidence            99999988754

>cd04126 Rab20 Rab20 subfamily

Probab=99.84  E-value=1.1e-20  Score=144.43  Aligned_cols=113  Identities=30%  Similarity=0.290  Sum_probs=89.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-------------------CCccCHHHHHHHHHHcC-
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-------------------KKVVLTEDAQRFANQMG-  118 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-------------------~~~v~~~~~~~~a~~~~-  118 (177)
                      ++|+++++||.++. |+..+...  ...++|++|||||+||..                   .|.|+.+++..+|++++ 
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~  151 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK  151 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence            58999999999997 76655322  235789999999999975                   68899999999999987 


Q ss_pred             -------------CcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416         119 -------------IQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC  177 (177)
Q Consensus       119 -------------~~~~e~Sak~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC  177 (177)
                                   ++||||||++|.||+++|..+++.++................+.+..+   +.+|++||
T Consensus       152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  220 (220)
T cd04126         152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNP---KRSKSKCC  220 (220)
T ss_pred             cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCc---ccCCCCCC
Confidence                         689999999999999999999999988765554433333345555543   34678899

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0087|consensus

Probab=99.84  E-value=8.5e-21  Score=140.25  Aligned_cols=90  Identities=27%  Similarity=0.325  Sum_probs=80.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+|||.+.||+++. ||.++..  ...++++|+|||||+||...|.|..++++.+|++.+..|+||||+++.||+.+|..
T Consensus        93 VYDITr~~Tfenv~rWL~ELRd--had~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~  170 (222)
T KOG0087|consen   93 VYDITRRQTFENVERWLKELRD--HADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFER  170 (222)
T ss_pred             EEechhHHHHHHHHHHHHHHHh--cCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHH
Confidence            39999999999998 9998842  23358999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKEQK  151 (177)
Q Consensus       139 ~~~~~~~~~~~~~  151 (177)
                      ++..|+.......
T Consensus       171 ~l~~I~~~vs~k~  183 (222)
T KOG0087|consen  171 VLTEIYKIVSKKQ  183 (222)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988754443

>KOG0080|consensus

Probab=99.83  E-value=3.5e-21  Score=136.76  Aligned_cols=115  Identities=23%  Similarity=0.296  Sum_probs=92.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+|||.++||.++. |+.+++ .+...+++..+|||||+|-++.|.|+.+++..||+++++.|+|+|||+.+||...|++
T Consensus        90 VYDVT~Rdtf~kLd~W~~Eld-~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee  168 (209)
T KOG0080|consen   90 VYDVTSRDTFVKLDIWLKELD-LYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE  168 (209)
T ss_pred             EEEccchhhHHhHHHHHHHHH-hhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence            59999999999998 999985 6777788999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcccccCCCCCC--CCCCCCC
Q psy1416         139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKP--GGKKKCC  177 (177)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~CC  177 (177)
                      ++.+|++..  ..-+..+.....++..++.-.  ...++||
T Consensus       169 lveKIi~tp--~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C  207 (209)
T KOG0080|consen  169 LVEKIIETP--SLWEEGNSSAGLDIASDPDGEASAHQGGCC  207 (209)
T ss_pred             HHHHHhcCc--chhhccCCccccccccCCCcccccccCCcc
Confidence            999998752  122222333445555433222  2235677

>KOG0081|consensus

Probab=99.81  E-value=8.7e-20  Score=129.54  Aligned_cols=91  Identities=26%  Similarity=0.407  Sum_probs=83.6

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|+|++.||.++. |+..+. .+..+.++-|||+|||+||++.|+|+.+++.++|.+++++||||||.+|.||+++.+.+
T Consensus        98 FDlT~eqSFLnvrnWlSQL~-~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L  176 (219)
T KOG0081|consen   98 FDLTSEQSFLNVRNWLSQLQ-THAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL  176 (219)
T ss_pred             EeccchHHHHHHHHHHHHHH-HhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence            8999999999998 999884 56666788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         140 TNLVLRSKKEQKE  152 (177)
Q Consensus       140 ~~~~~~~~~~~~~  152 (177)
                      +..+++++....+
T Consensus       177 ldlvM~Rie~~v~  189 (219)
T KOG0081|consen  177 LDLVMKRIEQCVE  189 (219)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998766544

>KOG0394|consensus

Probab=99.81  E-value=1.8e-19  Score=130.61  Aligned_cols=107  Identities=25%  Similarity=0.266  Sum_probs=85.4

Q ss_pred             cccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcC--CCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQ--KKVVLTEDAQRFANQMG-IQLFETSAKDNINVEE  134 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~--~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~  134 (177)
                      +|+++.+||+++. |-+++.....  .+...|+||+|||+|+.+  .|+|+.+.|..||...| ++|||||||.+.||++
T Consensus        89 ydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~  168 (210)
T KOG0394|consen   89 YDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDE  168 (210)
T ss_pred             eecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHH
Confidence            6999999999998 9988743332  235689999999999976  39999999999999876 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCcccccCCC
Q psy1416         135 MFMAITNLVLRSKKEQKERQVLNSDTVNIRKHT  167 (177)
Q Consensus       135 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (177)
                      +|..+++.++..............+.+.+....
T Consensus       169 AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~  201 (210)
T KOG0394|consen  169 AFEEIARRALANEDREIAELADYSDQIVLSTKA  201 (210)
T ss_pred             HHHHHHHHHHhccchhhhhhhhcCccccccccc
Confidence            999999999987644232333445556555543

>cd04120 Rab12 Rab12 subfamily

Probab=99.80  E-value=2.3e-19  Score=135.42  Aligned_cols=86  Identities=29%  Similarity=0.471  Sum_probs=75.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|+|+++||+++. |+..+...  ...++|++|||||+||...+.|+.+++.++|+++ ++.|+||||++|.||+++|.
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~--~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~  156 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKY--ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL  156 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence            58999999999998 99876322  2357999999999999888999999999999886 78999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         138 AITNLVLRSK  147 (177)
Q Consensus       138 ~~~~~~~~~~  147 (177)
                      .+++.+....
T Consensus       157 ~l~~~~~~~~  166 (202)
T cd04120         157 KLVDDILKKM  166 (202)
T ss_pred             HHHHHHHHhC
Confidence            9999887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0083|consensus

Probab=99.79  E-value=3.4e-20  Score=128.13  Aligned_cols=86  Identities=30%  Similarity=0.506  Sum_probs=77.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+||+|+.||+++. |+.++. .+.. ..+.++|+|||+|+..+|.|..++++.+|+.++++|+|+|||+|.||+.+|..
T Consensus        77 lydiankasfdn~~~wlsei~-ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~  154 (192)
T KOG0083|consen   77 LYDIANKASFDNCQAWLSEIH-EYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLA  154 (192)
T ss_pred             eeecccchhHHHHHHHHHHHH-HHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHH
Confidence            48999999999998 998873 3332 36788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++++.+..
T Consensus       155 ia~~l~k~~  163 (192)
T KOG0083|consen  155 IAEELKKLK  163 (192)
T ss_pred             HHHHHHHhc
Confidence            999988764

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.79  E-value=9e-19  Score=131.84  Aligned_cols=118  Identities=26%  Similarity=0.295  Sum_probs=87.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~  135 (177)
                      ++|+++++||+++. |+..+.....  ...++|++|||||+||...+.+..+++.++++.++ ..|+++||++|.||+++
T Consensus        80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            58999999999997 9887643211  12578999999999998777889999999999999 68999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416         136 FMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC  177 (177)
Q Consensus       136 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC  177 (177)
                      |..+++.+.+..+............+....+....++.+.||
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            999999998775443333322222222222222333445698

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0086|consensus

Probab=99.79  E-value=1.5e-19  Score=127.52  Aligned_cols=100  Identities=23%  Similarity=0.229  Sum_probs=86.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+|+|+++||+.+. |+.++.  --.++++.++|+|||.||..+|+|+..++..||++..+.|.||||+||+||++.|..
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR--~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~  165 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDAR--TLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  165 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHH--hhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence            49999999999997 998773  333468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcc
Q psy1416         139 ITNLVLRSKKEQKERQVLNSDTV  161 (177)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~  161 (177)
                      .++.|+.+....+.++...+..|
T Consensus       166 c~~tIl~kIE~GElDPer~gsGI  188 (214)
T KOG0086|consen  166 CARTILNKIESGELDPERMGSGI  188 (214)
T ss_pred             HHHHHHHHHhhcCCCHHHccccc
Confidence            99999998866655544444333

>cd04121 Rab40 Rab40 subfamily

Probab=99.78  E-value=4.5e-19  Score=132.56  Aligned_cols=85  Identities=29%  Similarity=0.382  Sum_probs=76.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+|++.||+++. |++++.. .  .+++|++|||||+||...+.|+.+++..+|+.++++||||||++|.||+++|..
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~-~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDE-H--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHH-h--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            59999999999998 9988842 2  247999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+..+.
T Consensus       162 l~~~i~~~~  170 (189)
T cd04121         162 LARIVLMRH  170 (189)
T ss_pred             HHHHHHHhc
Confidence            999887653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0097|consensus

Probab=99.78  E-value=6.5e-19  Score=123.00  Aligned_cols=90  Identities=24%  Similarity=0.356  Sum_probs=80.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+|||.+.++.++. |+.+.  ++-..++..|+|+|||.||+.+|.|+.+++++||+++|..|+|+|||+|.||+++|.+
T Consensus        90 vyditrrstynhlsswl~da--r~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle  167 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDA--RNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE  167 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhh--hccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence            49999999999998 99765  3333468899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKEQK  151 (177)
Q Consensus       139 ~~~~~~~~~~~~~  151 (177)
                      .++.|.+..+...
T Consensus       168 ~akkiyqniqdgs  180 (215)
T KOG0097|consen  168 TAKKIYQNIQDGS  180 (215)
T ss_pred             HHHHHHHhhhcCc
Confidence            9999998776543

>PTZ00099 rab6; Provisional

Probab=99.75  E-value=1.9e-18  Score=127.83  Aligned_cols=85  Identities=24%  Similarity=0.212  Sum_probs=75.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+....  ..++|++|||||+||...+.|+.+++..++..++..|+|+||++|.||+++|..
T Consensus        59 v~D~t~~~sf~~~~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~  136 (176)
T PTZ00099         59 VYDITNRQSFENTTKWIQDILNER--GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKK  136 (176)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            58999999999997 998774222  247899999999999877889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.+.
T Consensus       137 l~~~l~~~  144 (176)
T PTZ00099        137 IAAKLPNL  144 (176)
T ss_pred             HHHHHHhc
Confidence            99998764

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.75  E-value=1.8e-18  Score=129.98  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=70.4

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC-------------------CCccCHHHHHHHHHHcC
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-------------------KKVVLTEDAQRFANQMG  118 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-------------------~~~v~~~~~~~~a~~~~  118 (177)
                      ++|++++.||+++ . |+.++.. .  .+++|++|||||+||..                   .+.|+.+++..+|++++
T Consensus        94 v~d~t~~~Sf~~~~~~w~~~i~~-~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~  170 (195)
T cd01873          94 CFSIASPNSLRNVKTMWYPEIRH-F--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG  170 (195)
T ss_pred             EEECCChhHHHHHHHHHHHHHHH-h--CCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhC
Confidence            5899999999999 3 9887732 2  24789999999999964                   47899999999999999


Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      ++|+|||||+|.||+++|..+++.
T Consensus       171 ~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         171 IPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.75  E-value=4.1e-18  Score=131.05  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=73.6

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|+|+++||+++ . |+.++...   .+++|+||||||+||..            .+.|+.+++.++|+++++ .||||
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~---~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et  167 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDY---CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC  167 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHh---CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence            5899999999985 5 99877422   24789999999999964            378999999999999998 69999


Q ss_pred             cCCCCC-CHHHHHHHHHHHHHHHH
Q psy1416         125 SAKDNI-NVEEMFMAITNLVLRSK  147 (177)
Q Consensus       125 Sak~~~-~v~~~f~~~~~~~~~~~  147 (177)
                      ||++|. ||+++|..+++.+++..
T Consensus       168 SAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         168 SAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             cCCcCCcCHHHHHHHHHHHHHHhc
Confidence            999998 89999999999988753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.75  E-value=2.4e-18  Score=127.94  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|++++.||+++ . |+..+.. .  .+++|++|||||+||.+            .+.|+.+++.++|+++++ +|+||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~-~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQE-F--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH-H--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            5999999999998 5 9987742 2  24789999999999964            356999999999999996 89999


Q ss_pred             cCCCCCC-HHHHHHHHHHHHH
Q psy1416         125 SAKDNIN-VEEMFMAITNLVL  144 (177)
Q Consensus       125 Sak~~~~-v~~~f~~~~~~~~  144 (177)
                      ||++|.| |+++|..+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=99.74  E-value=3.2e-18  Score=126.63  Aligned_cols=82  Identities=23%  Similarity=0.333  Sum_probs=71.3

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC----------ccCHHHHHHHHHHcCC-cEEEecC
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK----------VVLTEDAQRFANQMGI-QLFETSA  126 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~----------~v~~~~~~~~a~~~~~-~~~e~Sa  126 (177)
                      ++|+++++||+++ . |+.++...   .+++|++|||||+||.+++          .|+.+++..+|+.+++ .|+||||
T Consensus        79 vyd~~~~~Sf~~~~~~w~~~i~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  155 (176)
T cd04133          79 AFSLISRASYENVLKKWVPELRHY---APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS  155 (176)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence            5999999999998 5 99877322   2479999999999997653          5899999999999998 5999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy1416         127 KDNINVEEMFMAITNLVL  144 (177)
Q Consensus       127 k~~~~v~~~f~~~~~~~~  144 (177)
                      ++|.||+++|..+++.+.
T Consensus       156 k~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         156 KTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CcccCHHHHHHHHHHHHh
Confidence            999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04144 Ras2 Ras2 subfamily

Probab=99.73  E-value=2e-17  Score=123.47  Aligned_cols=90  Identities=22%  Similarity=0.317  Sum_probs=76.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|+++..||+++. |+..+...... ..++|++|||||+||...+.++..++..+++.++++|+++||++|.||+++|.
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  156 (190)
T cd04144          77 VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFY  156 (190)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHH
Confidence            58999999999997 98777433221 35789999999999988788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         138 AITNLVLRSKKE  149 (177)
Q Consensus       138 ~~~~~~~~~~~~  149 (177)
                      .+++.+..+...
T Consensus       157 ~l~~~l~~~~~~  168 (190)
T cd04144         157 TLVRALRQQRQG  168 (190)
T ss_pred             HHHHHHHHhhcc
Confidence            999988765433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04131 Rnd Rnd subfamily

Probab=99.73  E-value=7.5e-18  Score=124.80  Aligned_cols=82  Identities=22%  Similarity=0.198  Sum_probs=70.7

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|+++++||+++ . |+..+.. .  .+++|++|||||+||..            .+.|+.+++.++|+++++ .|+||
T Consensus        79 vfdit~~~Sf~~~~~~w~~~i~~-~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  155 (178)
T cd04131          79 CFDISRPETLDSVLKKWRGEIQE-F--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC  155 (178)
T ss_pred             EEECCChhhHHHHHHHHHHHHHH-H--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence            5999999999996 5 9987742 2  25789999999999964            356999999999999997 79999


Q ss_pred             cCCCCCC-HHHHHHHHHHHHH
Q psy1416         125 SAKDNIN-VEEMFMAITNLVL  144 (177)
Q Consensus       125 Sak~~~~-v~~~f~~~~~~~~  144 (177)
                      ||++|.| |+++|..+++..+
T Consensus       156 SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         156 SAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             ccCcCCcCHHHHHHHHHHHHh
Confidence            9999995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03110 Rab GTPase; Provisional

Probab=99.72  E-value=3.3e-17  Score=124.86  Aligned_cols=87  Identities=24%  Similarity=0.262  Sum_probs=76.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||.++. |+..+...  ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDH--ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHh--CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48899999999997 99877422  2247999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         139 ITNLVLRSKK  148 (177)
Q Consensus       139 ~~~~~~~~~~  148 (177)
                      +++.+.+...
T Consensus       169 l~~~i~~~~~  178 (216)
T PLN03110        169 ILLEIYHIIS  178 (216)
T ss_pred             HHHHHHHHhh
Confidence            9999987543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.72  E-value=1.9e-17  Score=121.88  Aligned_cols=86  Identities=22%  Similarity=0.298  Sum_probs=75.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+... ...+++|++|||||+||.+.+.++.+++..+++.++++|+||||++|.||+++|..
T Consensus        80 v~d~~~~~Sf~~~~~~~~~i~~~-~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~  158 (172)
T cd04141          80 CYSVTDRHSFQEASEFKKLITRV-RLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG  158 (172)
T ss_pred             EEECCchhHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence            58999999999997 87766432 22357999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.+.
T Consensus       159 l~~~~~~~  166 (172)
T cd04141         159 LVREIRRK  166 (172)
T ss_pred             HHHHHHHh
Confidence            99988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04112 Rab26 Rab26 subfamily

Probab=99.72  E-value=4e-17  Score=121.93  Aligned_cols=111  Identities=30%  Similarity=0.414  Sum_probs=85.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||+++. |+..+...  ...++|++|||||+||...+.+..+++..++..++.+|+|+||++|.||+++|..
T Consensus        80 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~  157 (191)
T cd04112          80 LYDITNKASFDNIRAWLTEIKEY--AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTA  157 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 98877422  2247899999999999877888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416         139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC  177 (177)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC  177 (177)
                      +++.+.+....    .... ....+..=....+++++||
T Consensus       158 l~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         158 VAKELKHRKYE----QPDE-GKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHHHHhccc----cCCC-CcEEeccccCcccccCCCC
Confidence            99998766322    1111 1222322223345678898

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=99.72  E-value=3.6e-17  Score=123.02  Aligned_cols=114  Identities=47%  Similarity=0.659  Sum_probs=85.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+..   ..+.+|++|||||+||...+.+..+++..+++.++..||++||++|.||+++|..
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~---~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQ---NCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH---hCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            58999999999997 9987632   2247899999999999887788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416         139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC  177 (177)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC  177 (177)
                      +++.++........ ....-+.......+.+.+++++||
T Consensus       162 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         162 ITELVLRAKKDNLA-KQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHhhhccCc-ccccCCccccCccchhccccccCC
Confidence            99999876433211 111111122222233335677898

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0395|consensus

Probab=99.71  E-value=2.3e-17  Score=123.89  Aligned_cols=86  Identities=24%  Similarity=0.236  Sum_probs=76.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .++||++.||+.+. |+..+. .......+|++|||||+||...|.|+.++|..+|..++++|+|+||+.+.+|+++|..
T Consensus        81 Vysitd~~SF~~~~~l~~~I~-r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~  159 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQIL-RVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE  159 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHH-HhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence            49999999999997 776663 3333456999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+...
T Consensus       160 L~r~~~~~  167 (196)
T KOG0395|consen  160 LVREIRLP  167 (196)
T ss_pred             HHHHHHhh
Confidence            99988763

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.71  E-value=1.4e-17  Score=121.04  Aligned_cols=82  Identities=22%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCc--CCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDP--QKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~--~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++|++||.++. |+..+.. ....+++|++|||||.||.  ..+.|+.+++.+++++. ++.|+||||++|.||+++
T Consensus        72 v~d~~~~~sf~~~~~~~~~i~~-~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~  150 (158)
T cd04103          72 VFSLENEASFQTVYNLYHQLSS-YRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV  150 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence            59999999999997 9988742 2223578999999999995  46889999999999887 489999999999999999


Q ss_pred             HHHHHHH
Q psy1416         136 FMAITNL  142 (177)
Q Consensus       136 f~~~~~~  142 (177)
                      |..+++.
T Consensus       151 f~~~~~~  157 (158)
T cd04103         151 FQEAAQK  157 (158)
T ss_pred             HHHHHhh
Confidence            9999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.70  E-value=5.5e-17  Score=117.42  Aligned_cols=83  Identities=31%  Similarity=0.450  Sum_probs=75.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||+++. |+..+.....  .++|++|||||.|+.+.+.|+.+++..++++++.+|+|+||+++.||.++|..
T Consensus        78 ~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen   78 VFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred             ccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence            58999999999998 9988743222  46899999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04111 Rab39 Rab39 subfamily

Probab=99.69  E-value=1.7e-16  Score=120.49  Aligned_cols=89  Identities=27%  Similarity=0.356  Sum_probs=77.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||.++. |+..+... .....+|++|||||+||...+.++.+++..+++.+++.|+|+||++|.||+++|..
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~-~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSH-IQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 99877422 22246889999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.+....
T Consensus       161 l~~~~~~~~~~  171 (211)
T cd04111         161 LTQEIYERIKR  171 (211)
T ss_pred             HHHHHHHHhhc
Confidence            99998877533

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.69  E-value=1.3e-16  Score=121.40  Aligned_cols=87  Identities=24%  Similarity=0.291  Sum_probs=76.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|+++++||.++. |+..+...... ..++|++|||||+||...+.++.+++..+++.++++|+++||++|.||+++|.
T Consensus        80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            59999999999997 99877433221 24678999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         138 AITNLVLRS  146 (177)
Q Consensus       138 ~~~~~~~~~  146 (177)
                      .+++.+...
T Consensus       160 ~l~~~l~~~  168 (215)
T cd04109         160 QLAAELLGV  168 (215)
T ss_pred             HHHHHHHhc
Confidence            999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04122 Rab14 Rab14 subfamily

Probab=99.69  E-value=1.1e-16  Score=116.61  Aligned_cols=84  Identities=26%  Similarity=0.389  Sum_probs=74.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+...  ..++.|++|||||+||...+.++.+++..+++.++++|+|+||++|.||+++|..
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~  158 (166)
T cd04122          81 VYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLE  158 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            58999999999997 99776322  2347899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       159 l~~~~~~  165 (166)
T cd04122         159 TAKKIYQ  165 (166)
T ss_pred             HHHHHhh
Confidence            9988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01875 RhoG RhoG subfamily

Probab=99.69  E-value=8.1e-17  Score=120.42  Aligned_cols=83  Identities=19%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|++++.||+++.  |+..+.. .  .+++|++|||||+||.+.            +.|+.+++..+|++++ ..|+|+
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~-~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~  157 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCH-H--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLEC  157 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-h--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            58999999999994  9876632 2  247999999999999754            3578899999999998 589999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ||++|.||+++|..+++.+..
T Consensus       158 SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         158 SALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999987753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PLN03108 Rab family protein; Provisional

Probab=99.68  E-value=2.8e-16  Score=119.21  Aligned_cols=87  Identities=25%  Similarity=0.370  Sum_probs=76.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||.++. |+..+...  ....+|+++||||+||...+.++.+++..+++.++++|+|+||+++.||+++|..
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQH--ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 98766322  2247899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         139 ITNLVLRSKK  148 (177)
Q Consensus       139 ~~~~~~~~~~  148 (177)
                      +++.++++..
T Consensus       163 l~~~~~~~~~  172 (210)
T PLN03108        163 TAAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHHhh
Confidence            9999987654

>cd04134 Rho3 Rho3 subfamily

Probab=99.68  E-value=1.6e-16  Score=118.57  Aligned_cols=83  Identities=22%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|+++++||.++.  |+..+.. .  .+++|++|||||+||...+            .++.+++..+++..+ +.|+|+
T Consensus        78 v~dv~~~~sf~~~~~~~~~~i~~-~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (189)
T cd04134          78 CFSVDSPDSLENVESKWLGEIRE-H--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC  154 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH-h--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence            49999999999984  9877742 1  2479999999999997543            467888999999887 689999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ||++|.||+++|..+++.++.
T Consensus       155 SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         155 SAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             cCCcCCCHHHHHHHHHHHHhc
Confidence            999999999999999988863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.67  E-value=1.5e-16  Score=115.65  Aligned_cols=81  Identities=31%  Similarity=0.409  Sum_probs=71.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+...  ...++|+++||||.||...+.++.+++..+++.++.+|+|+||++|.||+++|..
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~--~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  156 (161)
T cd04117          79 VYDISSERSYQHIMKWVSDVDEY--APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTR  156 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999998 99876422  2247999999999999888889999999999999999999999999999999999


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      |++.
T Consensus       157 l~~~  160 (161)
T cd04117         157 LTEL  160 (161)
T ss_pred             HHhh
Confidence            9864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04127 Rab27A Rab27a subfamily

Probab=99.67  E-value=1.9e-16  Score=116.64  Aligned_cols=86  Identities=30%  Similarity=0.465  Sum_probs=75.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||.++. |+..+.. ....+++|++|||||+||...+.++.+++..++++++++|+++||++|.||+++|..
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~  171 (180)
T cd04127          93 IFDLTNEQSFLNVRNWMSQLQT-HAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVER  171 (180)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 9987742 222357899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.++++
T Consensus       172 l~~~~~~~  179 (180)
T cd04127         172 LLDLVMKR  179 (180)
T ss_pred             HHHHHHhh
Confidence            99888754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PTZ00369 Ras-like protein; Provisional

Probab=99.67  E-value=2.2e-16  Score=117.70  Aligned_cols=87  Identities=25%  Similarity=0.300  Sum_probs=75.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||+.+. |+..+... ...+++|++|||||+|+...+.++.+++..+++.++.+|+++||++|.||+++|..
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~-~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRV-KDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            58999999999997 98776422 22357899999999999877888988999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       162 l~~~l~~~~  170 (189)
T PTZ00369        162 LVREIRKYL  170 (189)
T ss_pred             HHHHHHHHh
Confidence            999887653

>cd04125 RabA_like RabA-like subfamily

Probab=99.66  E-value=4.1e-16  Score=115.99  Aligned_cols=86  Identities=30%  Similarity=0.387  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||.++. |+..+...  ....+|++|||||+|+...+.+..+++..+++..+++|+|+||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~i~~~~~~i~~~--~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~  156 (188)
T cd04125          79 VYDVTDQESFENLKFWINEINRY--ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFIL  156 (188)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            48999999999998 99877422  2245899999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+..+.
T Consensus       157 l~~~~~~~~  165 (188)
T cd04125         157 LVKLIIKRL  165 (188)
T ss_pred             HHHHHHHHh
Confidence            999987653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.66  E-value=3.5e-16  Score=119.65  Aligned_cols=85  Identities=20%  Similarity=0.183  Sum_probs=71.5

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|+++++||+++ . |..++.   ...+++|++|||||+||...            ..|+.+++..+|+++++ .|+||
T Consensus        79 vfdis~~~Sf~~i~~~w~~~~~---~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~  155 (222)
T cd04173          79 CFDISRPETLDSVLKKWQGETQ---EFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC  155 (222)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH---hhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence            6999999999999 4 876552   22357999999999999642            24888999999999996 89999


Q ss_pred             cCCCCCC-HHHHHHHHHHHHHHHH
Q psy1416         125 SAKDNIN-VEEMFMAITNLVLRSK  147 (177)
Q Consensus       125 Sak~~~~-v~~~f~~~~~~~~~~~  147 (177)
                      ||+++.+ |+++|..+++.++...
T Consensus       156 SAk~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         156 SSRSSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHhcc
Confidence            9999985 9999999999887654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.65  E-value=3e-16  Score=115.77  Aligned_cols=81  Identities=16%  Similarity=0.232  Sum_probs=69.5

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|+++++||+++.  |+..+.. .  .+++|++|||||+||...            +.|+.+++.+++++.+ ..|+|+
T Consensus        79 v~d~~~~~s~~~~~~~w~~~i~~-~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~  155 (175)
T cd01874          79 CFSVVSPSSFENVKEKWVPEITH-H--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC  155 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH-h--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence            59999999999994  9877632 2  247899999999999653            6789999999999987 689999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLV  143 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~  143 (177)
                      ||++|.||+++|..+++.+
T Consensus       156 SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         156 SALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             cCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.63  E-value=8.1e-16  Score=111.84  Aligned_cols=85  Identities=24%  Similarity=0.283  Sum_probs=73.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~-~v~~~f~  137 (177)
                      ++|++++.||+.+. |+..+........++|++|||||+|+...+.++.+++..+++..+++|+++||++|. ||+++|.
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~  157 (165)
T cd04146          78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH  157 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence            58999999999997 887764322213479999999999998778899999999999999999999999995 9999999


Q ss_pred             HHHHHHH
Q psy1416         138 AITNLVL  144 (177)
Q Consensus       138 ~~~~~~~  144 (177)
                      .+++.+.
T Consensus       158 ~l~~~~~  164 (165)
T cd04146         158 ELCREVR  164 (165)
T ss_pred             HHHHHHh
Confidence            9998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.63  E-value=1e-15  Score=115.44  Aligned_cols=82  Identities=21%  Similarity=0.291  Sum_probs=69.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||.++. |+.++...   .+++|++|||||+||.. +.+..+. ..+++..++.||||||++|.||+++|..
T Consensus        74 V~D~t~~~S~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~  148 (200)
T smart00176       74 MFDVTARVTYKNVPNWHRDLVRV---CENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLW  148 (200)
T ss_pred             EEECCChHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 99887432   24799999999999964 4566554 4788889999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.+.
T Consensus       149 l~~~i~~~  156 (200)
T smart00176      149 LARKLIGD  156 (200)
T ss_pred             HHHHHHhc
Confidence            99998765

Ran is involved in the active transport of proteins through nuclear pores.

>cd04142 RRP22 RRP22 subfamily

Probab=99.62  E-value=1.1e-15  Score=114.99  Aligned_cols=88  Identities=14%  Similarity=0.023  Sum_probs=73.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc-cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC-WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      ++|+++++||+.+. |++.+..... ...++|++|||||+||...+.+..+++..++. .++++||+|||++|.||+++|
T Consensus        87 v~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf  166 (198)
T cd04142          87 VYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF  166 (198)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHH
Confidence            59999999999997 8876643221 23579999999999998778888888887765 568999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         137 MAITNLVLRSK  147 (177)
Q Consensus       137 ~~~~~~~~~~~  147 (177)
                      ..+++.++...
T Consensus       167 ~~i~~~~~~~~  177 (198)
T cd04142         167 KELLISATTRG  177 (198)
T ss_pred             HHHHHHhhccC
Confidence            99999888654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.62  E-value=2.2e-15  Score=111.79  Aligned_cols=87  Identities=25%  Similarity=0.283  Sum_probs=73.8

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC----CccCHHHHHHHHHHcCC-cEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK----KVVLTEDAQRFANQMGI-QLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~----~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v  132 (177)
                      ++|+++++||+++.  |+..+..   ..+++|++|||||.||...    +.+..+++.+++..++. +|+++||++|.||
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  155 (187)
T cd04132          79 CYAVDNPTSLDNVEDKWFPEVNH---FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENV  155 (187)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH---hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCH
Confidence            48999999999994  9876632   1347899999999999653    46788999999999998 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy1416         133 EEMFMAITNLVLRSKKE  149 (177)
Q Consensus       133 ~~~f~~~~~~~~~~~~~  149 (177)
                      +++|..+++.+......
T Consensus       156 ~~~f~~l~~~~~~~~~~  172 (187)
T cd04132         156 EEVFDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999999876533

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.62  E-value=1.5e-15  Score=110.62  Aligned_cols=82  Identities=28%  Similarity=0.296  Sum_probs=70.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|+++++||.++. |+..+...... .+++|++|||||+|+...+.+..+++..++..+++.|+|+||++|.||+++|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~  158 (165)
T cd04140          79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQ  158 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence            59999999999997 88766433322 25799999999999987788888899999999999999999999999999999


Q ss_pred             HHHH
Q psy1416         138 AITN  141 (177)
Q Consensus       138 ~~~~  141 (177)
                      .|+.
T Consensus       159 ~l~~  162 (165)
T cd04140         159 ELLN  162 (165)
T ss_pred             HHHh
Confidence            9874

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.62  E-value=2.1e-15  Score=110.07  Aligned_cols=84  Identities=35%  Similarity=0.453  Sum_probs=74.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+...  ...++|++|||||+||.+.+.+..+++..+++.++.+|+++||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH--ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh--CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 99877432  2357899999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+..
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0095|consensus

Probab=99.61  E-value=3e-16  Score=110.58  Aligned_cols=88  Identities=23%  Similarity=0.307  Sum_probs=77.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .+||+-..||+.+- |+.+++ .+.. ..+-.||||||+|+.++|.|....+++|++.+.+.|.|||||...||+.+|.+
T Consensus        86 vydiscqpsfdclpewlreie-~yan-~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~  163 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIE-QYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD  163 (213)
T ss_pred             EEecccCcchhhhHHHHHHHH-HHhh-cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence            38999999999997 999985 3332 46778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      ++-++....+.
T Consensus       164 ~a~rli~~ar~  174 (213)
T KOG0095|consen  164 LACRLISEARQ  174 (213)
T ss_pred             HHHHHHHHHHh
Confidence            99888776543

>PLN03118 Rab family protein; Provisional

Probab=99.61  E-value=5.7e-15  Score=111.96  Aligned_cols=86  Identities=26%  Similarity=0.307  Sum_probs=73.7

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|+++++||..+.  |...+. ......+.|++|||||+||...+.++.+++..++..+++.|+|+||++|.||+++|.
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            48999999999995  766553 222234689999999999988788888999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         138 AITNLVLRS  146 (177)
Q Consensus       138 ~~~~~~~~~  146 (177)
                      .+++.+...
T Consensus       171 ~l~~~~~~~  179 (211)
T PLN03118        171 ELALKIMEV  179 (211)
T ss_pred             HHHHHHHhh
Confidence            999999765

>cd01865 Rab3 Rab3 subfamily

Probab=99.61  E-value=2.6e-15  Score=109.33  Aligned_cols=84  Identities=31%  Similarity=0.498  Sum_probs=73.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||+.+. |+..+...  ....+|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  157 (165)
T cd01865          80 MYDITNEESFNAVQDWSTQIKTY--SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFER  157 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            58999999999997 99877322  2247899999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       158 l~~~~~~  164 (165)
T cd01865         158 LVDIICD  164 (165)
T ss_pred             HHHHHHh
Confidence            9987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.61  E-value=1.3e-15  Score=112.28  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|+++++||.++ . |+..+...   .+++|++|||||+||...            +.|+.+++..++++++. .|+|+
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  155 (174)
T cd01871          79 CFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  155 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            4999999999999 4 98766322   247999999999999643            46899999999999985 89999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNL  142 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~  142 (177)
                      ||++|.||+++|..+++.
T Consensus       156 Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         156 SALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cccccCCHHHHHHHHHHh
Confidence            999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04129 Rho2 Rho2 subfamily

Probab=99.60  E-value=2.3e-15  Score=112.03  Aligned_cols=84  Identities=24%  Similarity=0.245  Sum_probs=70.8

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcC----------CCccCHHHHHHHHHHcCC-cEEEecC
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQ----------KKVVLTEDAQRFANQMGI-QLFETSA  126 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~----------~~~v~~~~~~~~a~~~~~-~~~e~Sa  126 (177)
                      ++|+++.+||..+.  |+..+...   .+++|++|||||+||..          .+.++.+++..+++.++. .||||||
T Consensus        79 v~~i~~~~s~~~~~~~~~~~i~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  155 (187)
T cd04129          79 GFAVDTPDSLENVRTKWIEEVRRY---CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA  155 (187)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence            48999999999994  98877422   24699999999999954          466788899999999985 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy1416         127 KDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       127 k~~~~v~~~f~~~~~~~~~~  146 (177)
                      ++|.||+++|..+++.++.-
T Consensus       156 ~~~~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         156 LTGEGVDDVFEAATRAALLV  175 (187)
T ss_pred             CCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999877543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04118 Rab24 Rab24 subfamily

Probab=99.60  E-value=7.5e-15  Score=109.51  Aligned_cols=85  Identities=24%  Similarity=0.322  Sum_probs=72.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC----CCccCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ----KKVVLTEDAQRFANQMGIQLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~----~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~  134 (177)
                      +.|++++.||+++. |+..+...   .+++|++|||||+||..    .+.+..+++..++..++++|+++||++|.||++
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  156 (193)
T cd04118          80 CYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDE  156 (193)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            48999999999987 99877422   24789999999999853    356777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         135 MFMAITNLVLRSK  147 (177)
Q Consensus       135 ~f~~~~~~~~~~~  147 (177)
                      +|..+++.+.+..
T Consensus       157 l~~~i~~~~~~~~  169 (193)
T cd04118         157 LFQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999997653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.59  E-value=4e-15  Score=108.23  Aligned_cols=83  Identities=34%  Similarity=0.440  Sum_probs=73.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+....  .+++|+++||||+|+...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  158 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMT  158 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHH
Confidence            48999999999997 998774221  247899999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       159 i~~~~~  164 (166)
T cd01869         159 MAREIK  164 (166)
T ss_pred             HHHHHH
Confidence            998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04136 Rap_like Rap-like subfamily

Probab=99.59  E-value=3.6e-15  Score=107.82  Aligned_cols=83  Identities=29%  Similarity=0.349  Sum_probs=71.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||+.+. |+..+... ....++|++|||||+||...+.++.+++..+++.++.+|+++||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04136          79 VYSITSQSSFNDLQDLREQILRV-KDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFAD  157 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            47999999999997 98777432 22357899999999999877788888899999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       158 l~~~~  162 (163)
T cd04136         158 LVRQI  162 (163)
T ss_pred             HHHhc
Confidence            98754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=99.59  E-value=3.9e-15  Score=108.05  Aligned_cols=83  Identities=29%  Similarity=0.312  Sum_probs=71.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+... ....++|++|||||+||...+.++.+++..+++.++++|+++||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  157 (164)
T cd04175          79 VYSITAQSTFNDLQDLREQILRV-KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYD  157 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            48999999999997 88776422 22357999999999999888888888889999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       158 l~~~l  162 (164)
T cd04175         158 LVRQI  162 (164)
T ss_pred             HHHHh
Confidence            98765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.58  E-value=2.6e-15  Score=109.90  Aligned_cols=82  Identities=22%  Similarity=0.272  Sum_probs=70.3

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|+++++||+++.  |+..+...   .+++|++|||||+||...            +.|+.+++..+++.++. .|+|+
T Consensus        76 v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  152 (174)
T smart00174       76 CFSVDSPASFENVKEKWYPEVKHF---CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLEC  152 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEe
Confidence            47999999999983  98876422   247999999999999653            34888999999999996 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ||++|.||+++|..+++.++
T Consensus       153 Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      153 SALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             cCCCCCCHHHHHHHHHHHhc
Confidence            99999999999999998875

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04128 Spg1 Spg1p

Probab=99.58  E-value=4.4e-15  Score=110.30  Aligned_cols=84  Identities=19%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-----CCccCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-----KKVVLTEDAQRFANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-----~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      ++|+++++||.++. |+..+....  ...+| +|||||+||..     .+.+..+++..+++.++++|+++||++|.||+
T Consensus        79 v~D~t~~~s~~~i~~~~~~~~~~~--~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~  155 (182)
T cd04128          79 MFDLTRKSTLNSIKEWYRQARGFN--KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQ  155 (182)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC--CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            49999999999997 998774321  23466 68999999942     22223567888999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      ++|..+++.+.+.
T Consensus       156 ~lf~~l~~~l~~~  168 (182)
T cd04128         156 KIFKIVLAKAFDL  168 (182)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04148 RGK RGK subfamily

Probab=99.58  E-value=6.6e-15  Score=112.58  Aligned_cols=87  Identities=22%  Similarity=0.200  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||.++. |+..+... ....++|++|||||+||...+.|+.+++..++..++++|+|+||++|.||+++|..
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            48999999999997 98776422 22357999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+....
T Consensus       158 l~~~~~~~~  166 (221)
T cd04148         158 IVRQIRLRR  166 (221)
T ss_pred             HHHHHHhhh
Confidence            999886543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.57  E-value=7.2e-15  Score=106.40  Aligned_cols=85  Identities=21%  Similarity=0.259  Sum_probs=73.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc---CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW---LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~---~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++++.||..+. |+.++......   ..++|+++||||+|+..++.+..+++..++..++++|+++||++|.||+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  158 (168)
T cd04119          79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM  158 (168)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            48999999999997 99877432221   246899999999999867778899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         136 FMAITNLVL  144 (177)
Q Consensus       136 f~~~~~~~~  144 (177)
                      |..+++.++
T Consensus       159 ~~~l~~~l~  167 (168)
T cd04119         159 FQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.57  E-value=5.7e-15  Score=112.79  Aligned_cols=83  Identities=22%  Similarity=0.276  Sum_probs=70.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||.++. |+..+...   .+++|++|||||+||.. +.+..+++ .+++..++.||||||++|.||+++|..
T Consensus        92 vfD~~~~~s~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         92 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHh---CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            48999999999997 99877422   35799999999999964 45666665 788888999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       167 l~~~~~~~~  175 (219)
T PLN03071        167 LARKLAGDP  175 (219)
T ss_pred             HHHHHHcCc
Confidence            999987653

>cd04176 Rap2 Rap2 subgroup

Probab=99.57  E-value=7.7e-15  Score=106.31  Aligned_cols=83  Identities=24%  Similarity=0.278  Sum_probs=71.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||.++. |+..+.... ...++|++|||||+|+...+.+...++..++..++.+|+++||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04176          79 VYSLVNQQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAE  157 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence            48999999999997 987764322 2257899999999999877788888899999988999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       158 l~~~l  162 (163)
T cd04176         158 IVRQM  162 (163)
T ss_pred             HHHhc
Confidence            98754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.56  E-value=9.6e-15  Score=106.88  Aligned_cols=83  Identities=37%  Similarity=0.461  Sum_probs=73.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC---CCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD---NINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~---~~~v~~~  135 (177)
                      ++|++++.||..+. |+..+.. .....++|++|||||+||...+.++.+++..+++.++++|+|+||++   +.+|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQ-HSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHH-hcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            59999999999997 9987742 22235799999999999998888999999999999999999999999   9999999


Q ss_pred             HHHHHHHH
Q psy1416         136 FMAITNLV  143 (177)
Q Consensus       136 f~~~~~~~  143 (177)
                      |..+++.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01866 Rab2 Rab2 subfamily

Probab=99.56  E-value=1.4e-14  Score=105.81  Aligned_cols=84  Identities=26%  Similarity=0.343  Sum_probs=74.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+....  .+++|++|||||.|+...+.++.+++..++..+++.|+|+||+++.||+++|..
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 998774222  357999999999999877788999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.55  E-value=1.6e-14  Score=104.51  Aligned_cols=83  Identities=28%  Similarity=0.334  Sum_probs=71.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+... ....++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  158 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRV-KDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHD  158 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH-hCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHH
Confidence            48999999999997 98776422 22347899999999999887888888899999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       159 l~~~~  163 (164)
T cd04145         159 LVRVI  163 (164)
T ss_pred             HHHhh
Confidence            98764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.55  E-value=1.8e-14  Score=105.76  Aligned_cols=85  Identities=22%  Similarity=0.259  Sum_probs=70.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--cCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--VLTEDAQRFANQMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      +.|+++++||.++. |+..+.... .+..+|++|||||+||...+.  +..+++..++++++++|+++||++|.||+++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          79 VFDLTDVASLEHTRQWLEDALKEN-DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFF  157 (170)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            47999999999998 998763222 224678999999999965443  45678888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         137 MAITNLVLR  145 (177)
Q Consensus       137 ~~~~~~~~~  145 (177)
                      ..+++.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.55  E-value=1.6e-14  Score=104.63  Aligned_cols=84  Identities=27%  Similarity=0.325  Sum_probs=71.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||..+. |...+.... ...+.|+++||||+|+...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        78 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  156 (164)
T smart00173       78 VYSITDRQSFEEIKKFREQILRVK-DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYD  156 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHH
Confidence            58899999999997 876663222 2247899999999999887888888999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       157 l~~~~~  162 (164)
T smart00173      157 LVREIR  162 (164)
T ss_pred             HHHHHh
Confidence            998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01868 Rab11_like Rab11-like

Probab=99.54  E-value=2.5e-14  Score=103.84  Aligned_cols=82  Identities=30%  Similarity=0.371  Sum_probs=71.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||.++. |+..+....  ..++|++|||||+|+...+.+..++...++..+++.|+++||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            47999999999998 998774222  236899999999999888888899999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      ++..+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            98765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.53  E-value=2.3e-14  Score=103.58  Aligned_cols=80  Identities=25%  Similarity=0.326  Sum_probs=70.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+..   ...++|++|||||+|+..++.++.+++..+++.++++|+++||++|.|++++|..
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEA---ECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH---hCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            48999999999997 9887632   2247999999999999888888999999999999999999999999999999999


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      ++..
T Consensus       158 l~~~  161 (162)
T cd04106         158 LAEK  161 (162)
T ss_pred             HHHh
Confidence            8753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04116 Rab9 Rab9 subfamily

Probab=99.53  E-value=3e-14  Score=103.98  Aligned_cols=82  Identities=29%  Similarity=0.301  Sum_probs=69.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~  135 (177)
                      ++|+++++||..+. |+..+.....  ...++|++|||||+||. .+.++.+++.+++++++. .|+++||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence            48999999999997 9876632221  12478999999999997 577889999999999884 7999999999999999


Q ss_pred             HHHHHHH
Q psy1416         136 FMAITNL  142 (177)
Q Consensus       136 f~~~~~~  142 (177)
                      |..+++.
T Consensus       163 ~~~~~~~  169 (170)
T cd04116         163 FEEAVRR  169 (170)
T ss_pred             HHHHHhh
Confidence            9999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01864 Rab19 Rab19 subfamily

Probab=99.52  E-value=3.4e-14  Score=103.24  Aligned_cols=81  Identities=28%  Similarity=0.382  Sum_probs=70.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|++++.||..+. |+..+...  ...++|++|||||+|+...+.+..+++..+++..+. .|+|+||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKY--GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            58999999999997 99877422  235789999999999988888888999999999886 689999999999999999


Q ss_pred             HHHHH
Q psy1416         138 AITNL  142 (177)
Q Consensus       138 ~~~~~  142 (177)
                      .+++.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.52  E-value=3.2e-14  Score=103.96  Aligned_cols=81  Identities=23%  Similarity=0.295  Sum_probs=67.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++.+||.++. |+..+....   .++|++|||||+||.. +.+.. ++..+++..++.|||+||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~---~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          79 MFDVTSRVTYKNVPNWHRDLVRVC---GNIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHH
Confidence            59999999999997 998874322   2799999999999973 44443 456778888889999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      |++.+.+
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9998875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04113 Rab4 Rab4 subfamily

Probab=99.51  E-value=4.2e-14  Score=102.24  Aligned_cols=82  Identities=29%  Similarity=0.378  Sum_probs=71.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||.++. |+..+...  ..+++|++|||||.|+...+.+..+++..++...+..|+++||+++.||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  156 (161)
T cd04113          79 VYDITNRTSFEALPTWLSDARAL--ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLK  156 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            58999999999997 98776322  2357899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       157 ~~~~~  161 (161)
T cd04113         157 CARSI  161 (161)
T ss_pred             HHHhC
Confidence            98753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.51  E-value=6.7e-14  Score=100.70  Aligned_cols=82  Identities=26%  Similarity=0.259  Sum_probs=68.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||.++. |+..+... ....++|++|||||+|+.. +.+..+++..+++..+++|+++||++|.||+++|..
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~-~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  156 (162)
T cd04138          79 VFAINSRKSFEDIHTYREQIKRV-KDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYT  156 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHH
Confidence            47899999999997 88766422 2234789999999999976 567788899999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       157 l~~~~  161 (162)
T cd04138         157 LVREI  161 (162)
T ss_pred             HHHHh
Confidence            98754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04135 Tc10 TC10 subfamily

Probab=99.50  E-value=4.7e-14  Score=103.24  Aligned_cols=81  Identities=21%  Similarity=0.252  Sum_probs=69.0

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|+++++||+.+.  |+..+...   .+++|++|||||+||.+.            +.|+.+++..+++..+. .|+|+
T Consensus        78 v~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (174)
T cd04135          78 CFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC  154 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence            57899999999994  88776322   357999999999999643            46888999999999986 79999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLV  143 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~  143 (177)
                      ||++|.||+++|..+++.+
T Consensus       155 Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         155 SALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCcCCCHHHHHHHHHHHh
Confidence            9999999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0393|consensus

Probab=99.50  E-value=2.4e-14  Score=106.43  Aligned_cols=84  Identities=23%  Similarity=0.304  Sum_probs=73.8

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      |.+|.+++||+++.  |+.++.   ..++++|+||||+|.||.++            ..|+.+++..+|++.| ..|+|+
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~---~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIK---HHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHH---hhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            68999999999995  987663   34479999999999999743            3689999999999999 579999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ||++..||.++|...++.++..
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~  181 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRP  181 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcc
Confidence            9999999999999999988764

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.50  E-value=8e-14  Score=100.97  Aligned_cols=81  Identities=30%  Similarity=0.377  Sum_probs=70.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||..+. |+..+....   .++|++|||||+|+...+.+...++..++..++++|+++||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          82 VYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            48999999999997 987764222   46899999999999877788888888888888999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            99865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04177 RSR1 RSR1 subgroup

Probab=99.50  E-value=8.2e-14  Score=101.68  Aligned_cols=84  Identities=29%  Similarity=0.358  Sum_probs=72.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|+++++||+++. |...+... ....++|+++||||.|+...+.++.+++..+++.++ ++|+++||++|.||+++|.
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~-~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~  157 (168)
T cd04177          79 VYSVTSEASLNELGELREQVLRI-KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI  157 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-hCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHH
Confidence            58899999999997 98777432 223579999999999998888888889999999988 8899999999999999999


Q ss_pred             HHHHHHH
Q psy1416         138 AITNLVL  144 (177)
Q Consensus       138 ~~~~~~~  144 (177)
                      .+++.++
T Consensus       158 ~i~~~~~  164 (168)
T cd04177         158 DLVRQII  164 (168)
T ss_pred             HHHHHHh
Confidence            9998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.49  E-value=7.9e-14  Score=102.30  Aligned_cols=79  Identities=23%  Similarity=0.288  Sum_probs=67.2

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|+++++||.++ . |+..+...   .+++|++|||||+||..            ++.|+.+++..+++..+. .|+|+
T Consensus        78 v~d~~~~~sf~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~  154 (173)
T cd04130          78 CFSVVNPSSFQNISEKWIPEIRKH---NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC  154 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence            4799999999998 3 98766321   24689999999999963            567899999999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITN  141 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~  141 (177)
                      ||++|.||+++|..++.
T Consensus       155 Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         155 SALTQKNLKEVFDTAIL  171 (173)
T ss_pred             eCCCCCCHHHHHHHHHh
Confidence            99999999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.47  E-value=1.4e-13  Score=106.94  Aligned_cols=84  Identities=23%  Similarity=0.222  Sum_probs=69.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc-------cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-cCCcEEEecCCCCC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC-------WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNI  130 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~-------~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~  130 (177)
                      ++|+++++||+++. |+.++.....       ...++|+||||||+||...+.+..+++.+++.. .++.|+++||++|.
T Consensus        78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            58999999999997 8877743211       224789999999999987778888888888764 46789999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy1416         131 NVEEMFMAITNLV  143 (177)
Q Consensus       131 ~v~~~f~~~~~~~  143 (177)
                      ||+++|..++..+
T Consensus       158 gI~elf~~L~~~~  170 (247)
T cd04143         158 NLDEMFRALFSLA  170 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.45  E-value=2.9e-13  Score=97.77  Aligned_cols=84  Identities=33%  Similarity=0.449  Sum_probs=73.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||+.+. |+..+.....  +++|+++|+||+|+...+.+..+.+..+++.++++|+|+||++|.|++++|..
T Consensus        79 v~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~  156 (164)
T smart00175       79 VYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEE  156 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            48899999999987 9987743221  47999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       157 i~~~~~~  163 (164)
T smart00175      157 LAREILK  163 (164)
T ss_pred             HHHHHhh
Confidence            9988764

Rab GTPases are implicated in vesicle trafficking.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.44  E-value=4e-13  Score=96.90  Aligned_cols=84  Identities=29%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||.++. |+..+..... ..++|+++|+||+|+...+.+..++...++..++.+|+++||++|.||+++|..
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  156 (164)
T cd04139          78 VFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYD  156 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHH
Confidence            47889999999997 7766532222 357999999999999775667788888899999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       157 l~~~~~  162 (164)
T cd04139         157 LVREIR  162 (164)
T ss_pred             HHHHHH
Confidence            988765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04124 RabL2 RabL2 subfamily

Probab=99.41  E-value=6.3e-13  Score=96.44  Aligned_cols=81  Identities=25%  Similarity=0.286  Sum_probs=67.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||.++. |+..+.. .  .+++|++|||||+||...  + .+++..+++.++++++++||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~-~--~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          79 VFDVTRKITYKNLSKWYEELRE-Y--RPEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-h--CCCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 9987742 1  247899999999999532  2 35566788888899999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.++++
T Consensus       153 l~~~~~~~  160 (161)
T cd04124         153 AIKLAVSY  160 (161)
T ss_pred             HHHHHHhc
Confidence            99988764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04114 Rab30 Rab30 subfamily

Probab=99.41  E-value=8.3e-13  Score=96.08  Aligned_cols=82  Identities=24%  Similarity=0.289  Sum_probs=69.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ...++|+++||||+|+...+.+..+.+..+.+.....++++||++|.|++++|..
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~--~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQY--ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            47999999999987 98766322  2246899999999999877888888888888888889999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            99765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01861 Rab6 Rab6 subfamily

Probab=99.40  E-value=8.2e-13  Score=95.28  Aligned_cols=81  Identities=30%  Similarity=0.342  Sum_probs=70.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+....  ..++|++|||||+|+...+.+..++...+++..++.++++||++|.|++++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  156 (161)
T cd01861          79 VYDITNRQSFDNTDKWIDDVRDER--GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRK  156 (161)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 998764222  237999999999999777778889999999999999999999999999999999


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      +++.
T Consensus       157 i~~~  160 (161)
T cd01861         157 IASA  160 (161)
T ss_pred             HHHh
Confidence            9864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04123 Rab21 Rab21 subfamily

Probab=99.40  E-value=1e-12  Score=94.52  Aligned_cols=82  Identities=27%  Similarity=0.439  Sum_probs=70.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++.+||..+. |+..+.....  .++|+++||||+|+...+.+..++...+++..+..++++||+++.|++++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~  156 (162)
T cd04123          79 VYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLS  156 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 9877743222  37899999999999877788888888899999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       157 l~~~~  161 (162)
T cd04123         157 LAKRM  161 (162)
T ss_pred             HHHHh
Confidence            98765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.39  E-value=1.5e-12  Score=94.01  Aligned_cols=82  Identities=34%  Similarity=0.425  Sum_probs=71.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|.++.+||..+. |+..+....  .+.+|+++|+||+|+...+.+..++...++..++..++++||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd01860          80 VYDITSEESFEKAKSWVKELQRNA--SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTE  157 (163)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            48889999999997 998774322  257999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       158 l~~~l  162 (163)
T cd01860         158 IAKKL  162 (163)
T ss_pred             HHHHh
Confidence            99875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.39  E-value=1.2e-12  Score=95.90  Aligned_cols=81  Identities=25%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|+++++||+++.  |+..+.+.   ..++|++|||||+||...            +.+...++..++...+. .|++|
T Consensus        79 v~~~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~  155 (175)
T cd01870          79 CFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC  155 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence            37999999999994  98766321   247899999999998532            45677889999998875 79999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLV  143 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~  143 (177)
                      ||++|.||+++|..+++.+
T Consensus       156 Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         156 SAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccccCcCHHHHHHHHHHHh
Confidence            9999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01863 Rab18 Rab18 subfamily

Probab=99.38  E-value=1.5e-12  Score=94.05  Aligned_cols=81  Identities=26%  Similarity=0.316  Sum_probs=68.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++..||..+. |+..+. ......++|+++||||+|+. .+.+..++...++...+++|+++||++|.|++++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~-~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  156 (161)
T cd01863          79 VYDVTRRDTFTNLETWLNELE-TYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEE  156 (161)
T ss_pred             EEECCCHHHHHhHHHHHHHHH-HhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            48999999999997 988764 23334579999999999997 3456778899999999999999999999999999999


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      +++.
T Consensus       157 ~~~~  160 (161)
T cd01863         157 LVEK  160 (161)
T ss_pred             HHHh
Confidence            8865

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01892 Miro2 Miro2 subfamily

Probab=99.37  E-value=8.2e-13  Score=96.79  Aligned_cols=81  Identities=15%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|++++.||..+. |+..+..    ..++|+++||||+||...+.+...+...+++.+++ .++++||++|.||+++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          84 VYDSSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEeCCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            48999999999996 8865521    13689999999999976666655667788888887 479999999999999999


Q ss_pred             HHHHHHH
Q psy1416         138 AITNLVL  144 (177)
Q Consensus       138 ~~~~~~~  144 (177)
                      .+++.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04158 ARD1 ARD1 subfamily

Probab=99.36  E-value=1.6e-12  Score=95.13  Aligned_cols=84  Identities=11%  Similarity=-0.013  Sum_probs=65.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC------CcEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG------IQLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~------~~~~e~Sak~~~~v  132 (177)
                      ++|+++++||..+. |+..+.... ...+.|++|||||+||..  .++.+++..++...+      ..|+++||++|.||
T Consensus        73 V~D~s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  149 (169)
T cd04158          73 VVDSSHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL  149 (169)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence            48999999999997 887663222 224589999999999964  367777777765332      25889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1416         133 EEMFMAITNLVLRS  146 (177)
Q Consensus       133 ~~~f~~~~~~~~~~  146 (177)
                      +++|..+++.+.+.
T Consensus       150 ~~~f~~l~~~~~~~  163 (169)
T cd04158         150 YEGLDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999877653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.33  E-value=5.9e-12  Score=92.68  Aligned_cols=86  Identities=26%  Similarity=0.269  Sum_probs=71.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..+|..+. |+..+.... ...+.|++||+||+|+...+.+..++...+++.++.+|+++||+++.||+++|..
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  157 (180)
T cd04137          79 VYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFEL  157 (180)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            47889999999997 766553222 2246899999999999877778888888889988999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+...
T Consensus       158 l~~~~~~~  165 (180)
T cd04137         158 LIEEIEKV  165 (180)
T ss_pred             HHHHHHHh
Confidence            99887644

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01862 Rab7 Rab7 subfamily

Probab=99.32  E-value=7.4e-12  Score=91.11  Aligned_cols=87  Identities=33%  Similarity=0.364  Sum_probs=71.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~  135 (177)
                      ++|+++..+|.++. |...+.....  ...++|++|||||+|+...+.+..++...+++..+ .+++++||++|.||+++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            48899999999997 9876532211  12478999999999998666777888888888887 78999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         136 FMAITNLVLRS  146 (177)
Q Consensus       136 f~~~~~~~~~~  146 (177)
                      |..+++.+++.
T Consensus       159 ~~~i~~~~~~~  169 (172)
T cd01862         159 FETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHhc
Confidence            99999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd00876 Ras Ras family

Probab=99.32  E-value=5.7e-12  Score=90.39  Aligned_cols=82  Identities=27%  Similarity=0.309  Sum_probs=69.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++.+||..+. |...+.... ....+|+++||||+|+...+.+..+++..++..++.+|+++||+++.||+++|..
T Consensus        77 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          77 VYSITDRESFEEIKGYREQILRVK-DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Confidence            58999999999987 766553222 1147899999999999877778889999999999999999999999999999999


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      +++.
T Consensus       156 l~~~  159 (160)
T cd00876         156 LVRE  159 (160)
T ss_pred             HHhh
Confidence            9875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01893 Miro1 Miro1 subfamily

Probab=99.31  E-value=3.2e-12  Score=93.13  Aligned_cols=83  Identities=27%  Similarity=0.273  Sum_probs=62.6

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC--HHHHHHHHHHcC--CcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL--TEDAQRFANQMG--IQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~--~~~~e~Sak~~~~v~  133 (177)
                      ++|++++.||..+.  |+..+.. ..  +++|++|||||+|+.+.+...  .++...++..++  ..|+++||++|.||+
T Consensus        77 v~d~~~~~s~~~~~~~~~~~i~~-~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  153 (166)
T cd01893          77 VYSVDRPSTLERIRTKWLPLIRR-LG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS  153 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH-hC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence            48999999999983  8876632 22  378999999999997655431  333444444443  379999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLR  145 (177)
Q Consensus       134 ~~f~~~~~~~~~  145 (177)
                      ++|..+++.+..
T Consensus       154 ~lf~~~~~~~~~  165 (166)
T cd01893         154 EVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHhcC
Confidence            999999987653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=99.30  E-value=3.5e-12  Score=93.42  Aligned_cols=79  Identities=11%  Similarity=-0.058  Sum_probs=59.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-----MGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++.||.++. |+..+... ....++|++|||||+||..  .++.+++..+...     ....++++||++|.||+
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            58999999999986 77655322 1124689999999999964  3566777665432     22468999999999999


Q ss_pred             HHHHHHHH
Q psy1416         134 EMFMAITN  141 (177)
Q Consensus       134 ~~f~~~~~  141 (177)
                      ++|..|++
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99998864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.27  E-value=1.6e-12  Score=94.81  Aligned_cols=79  Identities=18%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH----HHHHHHHHHcCCcEEEecCCC------
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT----EDAQRFANQMGIQLFETSAKD------  128 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~~~~~e~Sak~------  128 (177)
                      +.|.+++.+|..+. |+..+...   .+++|++|||||+|+...+.+..    .++..++++.++.||+|||++      
T Consensus        74 V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~  150 (164)
T cd04162          74 VVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSR  150 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhH
Confidence            48999999999887 88766321   15799999999999987665432    345667777788999999999      


Q ss_pred             CCCHHHHHHHHHH
Q psy1416         129 NINVEEMFMAITN  141 (177)
Q Consensus       129 ~~~v~~~f~~~~~  141 (177)
                      ++||+++|..++.
T Consensus       151 ~~~v~~~~~~~~~  163 (164)
T cd04162         151 MEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG4252|consensus

Probab=99.27  E-value=5.2e-12  Score=91.79  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=79.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ..+.||+.||+.+. |.+.+.   ..+.++|.++|-||+||.++.+++..+++.+|+..+..+|.+|+|...||..+|.+
T Consensus        99 VFSTTDr~SFea~~~w~~kv~---~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y  175 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQ---KETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY  175 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHH---HHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence            47789999999997 998773   22358999999999999998999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKEQK  151 (177)
Q Consensus       139 ~~~~~~~~~~~~~  151 (177)
                      |+..+.+++..+.
T Consensus       176 LaeK~~q~~kq~~  188 (246)
T KOG4252|consen  176 LAEKLTQQKKQSL  188 (246)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998876543

>cd00157 Rho Rho (Ras homology) family

Probab=99.27  E-value=9.5e-12  Score=90.46  Aligned_cols=79  Identities=20%  Similarity=0.279  Sum_probs=65.7

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC-----------ccCHHHHHHHHHHcCC-cEEEec
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK-----------VVLTEDAQRFANQMGI-QLFETS  125 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~-----------~v~~~~~~~~a~~~~~-~~~e~S  125 (177)
                      +.|++++.||....  |+..+....   .+.|+++||||+|+...+           .+..+++..++..++. .|+++|
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  154 (171)
T cd00157          78 CFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS  154 (171)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence            58999999998874  887664222   379999999999996543           4568889999999987 899999


Q ss_pred             CCCCCCHHHHHHHHHH
Q psy1416         126 AKDNINVEEMFMAITN  141 (177)
Q Consensus       126 ak~~~~v~~~f~~~~~  141 (177)
                      |++|.|++++|..+++
T Consensus       155 a~~~~gi~~l~~~i~~  170 (171)
T cd00157         155 ALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cCCCCCHHHHHHHHhh
Confidence            9999999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.26  E-value=2.3e-11  Score=91.31  Aligned_cols=84  Identities=25%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-CCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-KKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      +.|+++..||..+. |+..+.... ...++|++|||||+|+.. .+.+..+++.+.+. .++..|+++||++|.||+++|
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  155 (198)
T cd04147          77 VYAVDDPESFEEVERLREEILEVK-EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF  155 (198)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence            48999999999997 877663222 224799999999999965 56677666665554 456789999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         137 MAITNLVL  144 (177)
Q Consensus       137 ~~~~~~~~  144 (177)
                      ..+++.+.
T Consensus       156 ~~l~~~~~  163 (198)
T cd04147         156 KELLRQAN  163 (198)
T ss_pred             HHHHHHhh
Confidence            99998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.25  E-value=2e-11  Score=86.48  Aligned_cols=72  Identities=19%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||....|+...        ..|+++|+||+||.. +.+..+++.++++..+. +|+++||++|.||+++|..
T Consensus        69 v~d~~~~~s~~~~~~~~~~--------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  139 (142)
T TIGR02528        69 VQSATDPESRFPPGFASIF--------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY  139 (142)
T ss_pred             EecCCCCCcCCChhHHHhc--------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence            5899999999775575432        138999999999965 34567788888888876 7999999999999999988


Q ss_pred             HH
Q psy1416         139 IT  140 (177)
Q Consensus       139 ~~  140 (177)
                      ++
T Consensus       140 l~  141 (142)
T TIGR02528       140 LN  141 (142)
T ss_pred             Hh
Confidence            75

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.23  E-value=2.3e-11  Score=90.22  Aligned_cols=81  Identities=15%  Similarity=0.078  Sum_probs=58.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC--------cEEEecCCCCC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI--------QLFETSAKDNI  130 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~--------~~~e~Sak~~~  130 (177)
                      +.|+++++||..+. |+..+.... ..+++|++|||||+|+.+.  +..++   +++..++        .++++||++|+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~  164 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccCCCCC
Confidence            47999999999886 776552211 2247899999999999754  33333   3333332        35689999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy1416         131 NVEEMFMAITNLVLRS  146 (177)
Q Consensus       131 ~v~~~f~~~~~~~~~~  146 (177)
                      ||+++|..|++.+..+
T Consensus       165 gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        165 GLYEGLDWLSNNIANK  180 (181)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999887653

>cd04154 Arl2 Arl2 subfamily

Probab=99.22  E-value=1.7e-11  Score=89.81  Aligned_cols=79  Identities=14%  Similarity=0.026  Sum_probs=59.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~  133 (177)
                      ++|++++.||..+. |+..+.. .....++|++|||||+|+....  ..++...+..     ..+++|+++||++|.||+
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            58999999999886 8766532 1122479999999999997543  4555555543     245689999999999999


Q ss_pred             HHHHHHHH
Q psy1416         134 EMFMAITN  141 (177)
Q Consensus       134 ~~f~~~~~  141 (177)
                      ++|..++.
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.21  E-value=6.7e-12  Score=93.12  Aligned_cols=85  Identities=14%  Similarity=-0.036  Sum_probs=59.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~  133 (177)
                      ++|+++++||..+. |+..+.... ...++|++|||||.||...  +..++.....     +...+.++++||++|.||+
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            48999999999886 665542211 1246899999999999643  2333322211     1112346799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRSK  147 (177)
Q Consensus       134 ~~f~~~~~~~~~~~  147 (177)
                      ++|..+++.+.+++
T Consensus       168 e~~~~l~~~i~~~~  181 (182)
T PTZ00133        168 EGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887765

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.20  E-value=5.8e-12  Score=91.34  Aligned_cols=79  Identities=14%  Similarity=-0.008  Sum_probs=55.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH-HHHHHH----HcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED-AQRFAN----QMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~-~~~~a~----~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++.||..+. |+..+.... ....+|++|||||+||.+.  +..++ ...++.    ..++.++++||++|.||+
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~  150 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLY  150 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence            48999999999987 766552221 1246899999999999643  23333 222221    123457899999999999


Q ss_pred             HHHHHHHH
Q psy1416         134 EMFMAITN  141 (177)
Q Consensus       134 ~~f~~~~~  141 (177)
                      ++|..|++
T Consensus       151 ~~~~~l~~  158 (159)
T cd04150         151 EGLDWLSN  158 (159)
T ss_pred             HHHHHHhc
Confidence            99998864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00154 Rab Rab family

Probab=99.20  E-value=5.1e-11  Score=84.84  Aligned_cols=79  Identities=35%  Similarity=0.456  Sum_probs=67.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|.+++++|..+. |+..+....  ....|+++|+||+|+...+.+..++...++..++.+|+++||+++.+|+++|..
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  156 (159)
T cd00154          79 VYDITNRESFENLDKWLKELKEYA--PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQS  156 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            48888999999997 998774222  247899999999999756677889999999999999999999999999999998


Q ss_pred             HH
Q psy1416         139 IT  140 (177)
Q Consensus       139 ~~  140 (177)
                      ++
T Consensus       157 i~  158 (159)
T cd00154         157 LA  158 (159)
T ss_pred             Hh
Confidence            76

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.20  E-value=9e-12  Score=91.77  Aligned_cols=81  Identities=12%  Similarity=-0.054  Sum_probs=56.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++++||.... |+..+.... ..+++|++|||||+||.+..  ..++......     ...+.|+++||++|.||+
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            47999999999886 776553211 12478999999999997532  3333222211     112347789999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         134 EMFMAITNLV  143 (177)
Q Consensus       134 ~~f~~~~~~~  143 (177)
                      ++|..|++.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999987764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.20  E-value=6.7e-11  Score=89.84  Aligned_cols=82  Identities=22%  Similarity=0.294  Sum_probs=67.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+...   ..++|+++||||+|+.. +.+..+. ..+++..++.|+++||++|.||+++|..
T Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~---~~~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  162 (215)
T PTZ00132         88 MFDVTSRITYKNVPNWHRDIVRV---CENIPIVLVGNKVDVKD-RQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLW  162 (215)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccCcc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 98776422   24789999999999964 3344433 4678888899999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+...
T Consensus       163 ia~~l~~~  170 (215)
T PTZ00132        163 LARRLTND  170 (215)
T ss_pred             HHHHHhhc
Confidence            99988764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.19  E-value=2.1e-11  Score=94.71  Aligned_cols=76  Identities=18%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|++++. ||..+. |+..+..     .++|++||+||+||.+.+.+..+.+..++ .+++.+|++||++|.||+++|.
T Consensus        43 V~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~  116 (245)
T TIGR00157        43 VSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIE  116 (245)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHh
Confidence            58999888 899997 9865521     47899999999999766666555555554 4789999999999999999999


Q ss_pred             HHHH
Q psy1416         138 AITN  141 (177)
Q Consensus       138 ~~~~  141 (177)
                      .+..
T Consensus       117 ~l~~  120 (245)
T TIGR00157       117 ALQN  120 (245)
T ss_pred             hhcC
Confidence            8874

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.15  E-value=1.1e-10  Score=94.45  Aligned_cols=86  Identities=16%  Similarity=-0.030  Sum_probs=67.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++.++|+.+. |+.++........+.|++||+||+||.....+..+....++...+.+++++||+++.||+++|..
T Consensus       243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~  322 (335)
T PRK12299        243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRA  322 (335)
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence            48889888999987 98877432222246899999999999765555445556666667789999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +.+.+.+
T Consensus       323 L~~~l~~  329 (335)
T PRK12299        323 LWELLEE  329 (335)
T ss_pred             HHHHHHh
Confidence            9987754

>cd00879 Sar1 Sar1 subfamily

Probab=99.13  E-value=7.9e-11  Score=87.45  Aligned_cols=80  Identities=16%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH----------------cCCcEE
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----------------MGIQLF  122 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----------------~~~~~~  122 (177)
                      +.|+++..+|.... |+..+... ....+.|++|||||+|+..  .+..++...+...                ..+.++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            58999999998776 77665321 1224689999999999963  5677777776643                224689


Q ss_pred             EecCCCCCCHHHHHHHHHHH
Q psy1416         123 ETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus       123 e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +|||++|.||+++|..++..
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01898 Obg Obg subfamily

Probab=99.10  E-value=1.3e-10  Score=84.43  Aligned_cols=82  Identities=16%  Similarity=0.080  Sum_probs=61.2

Q ss_pred             ccccchh-hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-cCCcEEEecCCCCCCHHHHH
Q psy1416          60 VCTVLNE-CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~-~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~~v~~~f  136 (177)
                      +.|.++. ++|.++. |++.+..........|+++|+||+|+.....+ .+....+... .+.+++++||+++.||+++|
T Consensus        85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  163 (170)
T cd01898          85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELL  163 (170)
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence            3888998 7999887 98776432211236899999999999765443 3344445555 37789999999999999999


Q ss_pred             HHHHHH
Q psy1416         137 MAITNL  142 (177)
Q Consensus       137 ~~~~~~  142 (177)
                      ..+++.
T Consensus       164 ~~i~~~  169 (170)
T cd01898         164 RKLAEL  169 (170)
T ss_pred             HHHHhh
Confidence            998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.10  E-value=1.4e-10  Score=84.17  Aligned_cols=78  Identities=13%  Similarity=0.032  Sum_probs=57.4

Q ss_pred             cccchhhhh--cccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          61 CTVLNECAW--LGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        61 ~dit~~~Sf--~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      .|.++..+|  .... |+..+...   ..+.|++||+||+|+...+.+..  ...++...+.+++++||++|.||+++|.
T Consensus        87 ~d~~~~~~~~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (168)
T cd01897          87 FDPSETCGYSLEEQLSLFEEIKPL---FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKN  161 (168)
T ss_pred             EeCCcccccchHHHHHHHHHHHhh---cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHH
Confidence            566777665  3433 76655321   13789999999999976554332  4556666678899999999999999999


Q ss_pred             HHHHHH
Q psy1416         138 AITNLV  143 (177)
Q Consensus       138 ~~~~~~  143 (177)
                      .+++.+
T Consensus       162 ~l~~~~  167 (168)
T cd01897         162 KACELL  167 (168)
T ss_pred             HHHHHh
Confidence            998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.10  E-value=3.5e-10  Score=83.81  Aligned_cols=87  Identities=10%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH--c----CCcEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ--M----GIQLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~--~----~~~~~e~Sak~~~~v  132 (177)
                      +.|.++..+|..+. |+..+... ....+.|++||+||+|+...  +..++...+...  .    +.+++++||++|.||
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~-~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRF-SENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhh-hhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            47889999998887 88766322 12246899999999999643  444555544431  1    245889999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy1416         133 EEMFMAITNLVLRSKKE  149 (177)
Q Consensus       133 ~~~f~~~~~~~~~~~~~  149 (177)
                      +++|..+++.+.+....
T Consensus       159 ~~l~~~l~~~l~~~~~~  175 (183)
T cd04152         159 QEGLEKLYEMILKRRKM  175 (183)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999766543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04157 Arl6 Arl6 subfamily

Probab=99.08  E-value=6.7e-11  Score=85.22  Aligned_cols=80  Identities=11%  Similarity=0.010  Sum_probs=55.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHH---HH--HcCCcEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRF---AN--QMGIQLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~---a~--~~~~~~~e~Sak~~~~v  132 (177)
                      +.|+++..||..+. |+..+...... ..++|++|||||+|+....  ..++....   +.  .....++++||++|.||
T Consensus        75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv  152 (162)
T cd04157          75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGL  152 (162)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence            47899999998886 87765322221 2479999999999997532  22222221   11  12345899999999999


Q ss_pred             HHHHHHHHH
Q psy1416         133 EEMFMAITN  141 (177)
Q Consensus       133 ~~~f~~~~~  141 (177)
                      +++|..|++
T Consensus       153 ~~~~~~l~~  161 (162)
T cd04157         153 DEGVQWLQA  161 (162)
T ss_pred             HHHHHHHhc
Confidence            999998864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.05  E-value=1.3e-10  Score=83.76  Aligned_cols=79  Identities=16%  Similarity=0.116  Sum_probs=55.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH------HHHHcCCcEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR------FANQMGIQLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~------~a~~~~~~~~e~Sak~~~~v  132 (177)
                      ++|.++..+|..+. |+..+.... ...++|++||+||+|+...  +..++...      ++...+.+++++||++|.||
T Consensus        74 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  150 (160)
T cd04156          74 VVDSSDEARLDESQKELKHILKNE-HIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGL  150 (160)
T ss_pred             EEECCcHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCCh
Confidence            48889999999887 776653221 2247899999999999642  22333222      22223457999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         133 EEMFMAITN  141 (177)
Q Consensus       133 ~~~f~~~~~  141 (177)
                      +++|..+++
T Consensus       151 ~~~~~~i~~  159 (160)
T cd04156         151 AEAFRKLAS  159 (160)
T ss_pred             HHHHHHHhc
Confidence            999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.01  E-value=5.1e-10  Score=82.23  Aligned_cols=79  Identities=11%  Similarity=-0.061  Sum_probs=56.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHH-HHHH----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDA-QRFA----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++++|..+. |+..+.... ...++|++||+||+|+...  +..++. ..+.    +..+++++++||++|.||+
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~  165 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP  165 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence            48889999998886 665553222 2246899999999999652  233332 2222    2344579999999999999


Q ss_pred             HHHHHHHH
Q psy1416         134 EMFMAITN  141 (177)
Q Consensus       134 ~~f~~~~~  141 (177)
                      ++|..|++
T Consensus       166 e~~~~l~~  173 (174)
T cd04153         166 EGLDWIAS  173 (174)
T ss_pred             HHHHHHhc
Confidence            99999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.01  E-value=3e-10  Score=81.72  Aligned_cols=79  Identities=13%  Similarity=-0.089  Sum_probs=57.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++.++|..+. |+..+.... ...+.|+++|+||+|+...+  +.++..+...     ....+++++||++|.||+
T Consensus        73 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  149 (158)
T cd00878          73 VVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD  149 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHH
Confidence            58999999999886 776653222 23578999999999997543  3333333322     234679999999999999


Q ss_pred             HHHHHHHH
Q psy1416         134 EMFMAITN  141 (177)
Q Consensus       134 ~~f~~~~~  141 (177)
                      ++|..|+.
T Consensus       150 ~~~~~l~~  157 (158)
T cd00878         150 EGLDWLLQ  157 (158)
T ss_pred             HHHHHHhh
Confidence            99998874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.00  E-value=5.2e-10  Score=84.49  Aligned_cols=72  Identities=14%  Similarity=-0.031  Sum_probs=56.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhh-----------------ccCCCCcEEEEeeCCCCcCCCccCHH----HHHHHHHHc
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIY-----------------CWLFPSGLRLVGNKNDDPQKKVVLTE----DAQRFANQM  117 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~-----------------~~~~~~~~ilvgnK~Dl~~~~~v~~~----~~~~~a~~~  117 (177)
                      ++|+|+++||+++. |+.++....                 ....++|++|||||+||.++|.++.+    ....+|++.
T Consensus        84 VyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~  163 (202)
T cd04102          84 VHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQG  163 (202)
T ss_pred             EEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhc
Confidence            59999999999998 998874321                 11247999999999999887777665    345678899


Q ss_pred             CCcEEEecCCCCCC
Q psy1416         118 GIQLFETSAKDNIN  131 (177)
Q Consensus       118 ~~~~~e~Sak~~~~  131 (177)
                      +++.++.+++++..
T Consensus       164 ~~~~i~~~c~~~~~  177 (202)
T cd04102         164 NAEEINLNCTNGRL  177 (202)
T ss_pred             CCceEEEecCCccc
Confidence            99999999886543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04151 Arl1 Arl1 subfamily

Probab=98.99  E-value=2.2e-10  Score=82.56  Aligned_cols=79  Identities=16%  Similarity=0.046  Sum_probs=53.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-HH----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-FA----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++.+|.... |+..+.... ...+.|++||+||+|+.+..  ...+... +.    ...+.+++++||++|.||+
T Consensus        73 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  149 (158)
T cd04151          73 VVDSTDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLD  149 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHH
Confidence            48888988887764 554332111 12468999999999997432  2222221 11    1123469999999999999


Q ss_pred             HHHHHHHH
Q psy1416         134 EMFMAITN  141 (177)
Q Consensus       134 ~~f~~~~~  141 (177)
                      ++|..+++
T Consensus       150 ~l~~~l~~  157 (158)
T cd04151         150 EGMDWLVN  157 (158)
T ss_pred             HHHHHHhc
Confidence            99999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.97  E-value=9.3e-10  Score=79.75  Aligned_cols=79  Identities=15%  Similarity=0.062  Sum_probs=58.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-------cCCcEEEecCCCCCC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-------MGIQLFETSAKDNIN  131 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-------~~~~~~e~Sak~~~~  131 (177)
                      +.|.++.++|..+. |+..+... ....++|++||+||+|+...  +..++...+...       .+.+++++||++|.|
T Consensus        80 vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          80 VIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            47888888888886 77665322 12247899999999998653  445555555433       235799999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         132 VEEMFMAITN  141 (177)
Q Consensus       132 v~~~f~~~~~  141 (177)
                      |+++|..|++
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.95  E-value=3.3e-10  Score=82.74  Aligned_cols=81  Identities=10%  Similarity=-0.030  Sum_probs=57.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCcc----CHHHHHHHHHHcC--CcEEEecCCCC---
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV----LTEDAQRFANQMG--IQLFETSAKDN---  129 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v----~~~~~~~~a~~~~--~~~~e~Sak~~---  129 (177)
                      +.|++++.+|..+. |+..+... ....++|++|||||+|+...+..    .......++++.+  ..++++||++|   
T Consensus        73 V~D~s~~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~  151 (167)
T cd04161          73 VVDSSDDDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK  151 (167)
T ss_pred             EEECCchhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence            47999999999987 88776322 22247899999999999865521    1112233443333  45778999998   


Q ss_pred             ---CCHHHHHHHHHH
Q psy1416         130 ---INVEEMFMAITN  141 (177)
Q Consensus       130 ---~~v~~~f~~~~~  141 (177)
                         .||++.|..|+.
T Consensus       152 ~~~~g~~~~~~wl~~  166 (167)
T cd04161         152 KIDPSIVEGLRWLLA  166 (167)
T ss_pred             ccccCHHHHHHHHhc
Confidence               899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.94  E-value=3.6e-09  Score=76.81  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=59.2

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC--cEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI--QLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~--~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|.++..|+.. .|+..+.      ...|+++|+||+|+..   ...+...+++.+.+.  ++|++||++|.||+++|.
T Consensus        71 v~d~~~~~s~~~-~~~~~~~------~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         71 VHGANDPESRLP-AGLLDIG------VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEeCCCcccccC-HHHHhcc------CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            478888887732 2764431      2568999999999964   345677788888875  899999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         138 AITNLVLRS  146 (177)
Q Consensus       138 ~~~~~~~~~  146 (177)
                      .+++.+.+.
T Consensus       141 ~l~~~~~~~  149 (158)
T PRK15467        141 YLASLTKQE  149 (158)
T ss_pred             HHHHhchhh
Confidence            998777543

>KOG3883|consensus

Probab=98.92  E-value=2.6e-09  Score=75.91  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=71.5

Q ss_pred             cccchhhhhcccc----hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416          61 CTVLNECAWLGCG----WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        61 ~dit~~~Sf~~~~----w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      +|..|++||+.+.    |++.    ......+||++.|||+|+.+.+.|..+-+..||++..+..+|++|++...+-+.|
T Consensus        92 Ys~~d~eSf~rv~llKk~Idk----~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   92 YSPMDPESFQRVELLKKEIDK----HKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             ecCCCHHHHHHHHHHHHHHhh----ccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            7888999999985    5432    3334579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         137 MAITNLVLR  145 (177)
Q Consensus       137 ~~~~~~~~~  145 (177)
                      ..++..+..
T Consensus       168 ~~l~~rl~~  176 (198)
T KOG3883|consen  168 TYLASRLHQ  176 (198)
T ss_pred             HHHHHhccC
Confidence            999988764

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.89  E-value=3.4e-09  Score=85.65  Aligned_cols=82  Identities=17%  Similarity=0.064  Sum_probs=61.0

Q ss_pred             cccchh---hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416          61 CTVLNE---CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        61 ~dit~~---~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      .|+++.   ++++.+. |.+++........+.|++||+||+||..... ..+....+++..+.+++++||+++.||+++|
T Consensus       243 vD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~  321 (329)
T TIGR02729       243 IDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELL  321 (329)
T ss_pred             EcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHH
Confidence            677776   6777776 8776642222224689999999999975432 2345556677778899999999999999999


Q ss_pred             HHHHHHH
Q psy1416         137 MAITNLV  143 (177)
Q Consensus       137 ~~~~~~~  143 (177)
                      ..+++.+
T Consensus       322 ~~I~~~l  328 (329)
T TIGR02729       322 YALAELL  328 (329)
T ss_pred             HHHHHHh
Confidence            9998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01890 LepA LepA subfamily

Probab=98.88  E-value=4.9e-09  Score=76.85  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc---EEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ---LFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~Sak~~~~v~~~  135 (177)
                      +.|+++..++.... |....      ..++|+++|+||+|+.+.+  ..+...++++.+++.   ++++||++|.||+++
T Consensus        97 v~D~~~~~~~~~~~~~~~~~------~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (179)
T cd01890          97 LVDATQGVEAQTLANFYLAL------ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDL  168 (179)
T ss_pred             EEECCCCccHhhHHHHHHHH------HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHH
Confidence            37777776766665 53222      1367899999999996533  223345667777763   899999999999999


Q ss_pred             HHHHHHHH
Q psy1416         136 FMAITNLV  143 (177)
Q Consensus       136 f~~~~~~~  143 (177)
                      |..+++.+
T Consensus       169 ~~~l~~~~  176 (179)
T cd01890         169 LEAIVERI  176 (179)
T ss_pred             HHHHHhhC
Confidence            99998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG4423|consensus

Probab=98.86  E-value=4.3e-09  Score=77.11  Aligned_cols=87  Identities=23%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccC--CCCcEEEEeeCCCCcCCCccC-HHHHHHHHHHcCC-cEEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWL--FPSGLRLVGNKNDDPQKKVVL-TEDAQRFANQMGI-QLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~~v~-~~~~~~~a~~~~~-~~~e~Sak~~~~v~~  134 (177)
                      ..|+|+.-+|+.+. |..++...-..+  .++|+||.+||||.+..-... ......|.+++|. .++|||||.+.||+|
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            48999999999998 998874322222  467899999999997543222 4566778888886 599999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         135 MFMAITNLVLRS  146 (177)
Q Consensus       135 ~f~~~~~~~~~~  146 (177)
                      +-..+++.++..
T Consensus       185 a~r~lVe~~lvn  196 (229)
T KOG4423|consen  185 AQRELVEKILVN  196 (229)
T ss_pred             HHHHHHHHHHhh
Confidence            999999888755

>PRK04213 GTP-binding protein; Provisional

Probab=98.82  E-value=1.1e-08  Score=76.73  Aligned_cols=80  Identities=19%  Similarity=0.190  Sum_probs=55.3

Q ss_pred             cccchhhhhccc-c-hhhh--------hhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC---------cE
Q psy1416          61 CTVLNECAWLGC-G-WMTI--------CPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI---------QL  121 (177)
Q Consensus        61 ~dit~~~Sf~~~-~-w~~~--------~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~---------~~  121 (177)
                      .++.|..+|.++ . |...        +..... ..++|++||+||+||...+   .+...++++.+++         ++
T Consensus        95 i~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  170 (201)
T PRK04213         95 VLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-ELGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDII  170 (201)
T ss_pred             EEEEeCccccccccccccCCCcHHHHHHHHHHH-HcCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcE
Confidence            456677777665 3 6432        111111 1378999999999996543   3455667777665         47


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHH
Q psy1416         122 FETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       122 ~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +++||++| ||+++|..|++.+.+
T Consensus       171 ~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        171 APISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             EEEecccC-CHHHHHHHHHHhhcC
Confidence            99999999 999999999987644

>cd01878 HflX HflX subfamily

Probab=98.80  E-value=6.4e-09  Score=78.17  Aligned_cols=76  Identities=17%  Similarity=-0.042  Sum_probs=55.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|.++..++..+. |...+...  ...+.|+++|+||+|+.....+.     .++...+.+++++||++|.||+++|..
T Consensus       127 v~D~~~~~~~~~~~~~~~~l~~~--~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~  199 (204)
T cd01878         127 VVDASDPDYEEQIETVEKVLKEL--GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGLDELLEA  199 (204)
T ss_pred             EEECCCCChhhHHHHHHHHHHHc--CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCHHHHHHH
Confidence            46777777877765 66544221  12368999999999996543221     344556678999999999999999999


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      +...
T Consensus       200 L~~~  203 (204)
T cd01878         200 IEEL  203 (204)
T ss_pred             HHhh
Confidence            8765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0078|consensus

Probab=98.79  E-value=9.4e-09  Score=76.66  Aligned_cols=33  Identities=42%  Similarity=0.748  Sum_probs=29.9

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE   33 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~   33 (177)
                      +|+.|+|||||+|.||+++|..||+.|+.+...
T Consensus       147 ~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  147 YGIKFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             hCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence            589999999999999999999999999976543

>KOG0096|consensus

Probab=98.79  E-value=1.8e-09  Score=79.25  Aligned_cols=80  Identities=24%  Similarity=0.288  Sum_probs=64.8

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|||.+-++.++. |.+++...   +.++|||++|||.|..... + ......+-+..++.||+.||+++.|.+..|..+
T Consensus        90 FdVtsr~t~~n~~rwhrd~~rv---~~NiPiv~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVRV---RENIPIVLCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHHH---hcCCCeeeeccceeccccc-c-ccccceeeecccceeEEeecccccccccchHHH
Confidence            8999999999997 98877432   3479999999999987543 2 223344556678899999999999999999999


Q ss_pred             HHHHHH
Q psy1416         140 TNLVLR  145 (177)
Q Consensus       140 ~~~~~~  145 (177)
                      ++.+..
T Consensus       165 arKl~G  170 (216)
T KOG0096|consen  165 ARKLTG  170 (216)
T ss_pred             hhhhcC
Confidence            998864

>KOG0091|consensus

Probab=98.78  E-value=1.3e-08  Score=73.14  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=30.5

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE   33 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~   33 (177)
                      +||.|+|||||+|.||++||..|+++|+..+..
T Consensus       146 hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  146 HGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             cCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999987654

>cd04155 Arl3 Arl3 subfamily

Probab=98.75  E-value=2.1e-08  Score=73.09  Aligned_cols=76  Identities=14%  Similarity=0.049  Sum_probs=53.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC--------cEEEecCCCCC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI--------QLFETSAKDNI  130 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~--------~~~e~Sak~~~  130 (177)
                      +.|+++..+|.... |+..+... ....++|+++|+||+|+....  ..   ..+.+..++        .++++||++|.
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~--~~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~  161 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAA--PA---EEIAEALNLHDLRDRTWHIQACSAKTGE  161 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCC--CH---HHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence            47888988998876 66544221 122468999999999986432  22   233344332        37899999999


Q ss_pred             CHHHHHHHHHH
Q psy1416         131 NVEEMFMAITN  141 (177)
Q Consensus       131 ~v~~~f~~~~~  141 (177)
                      ||+++|..+++
T Consensus       162 gi~~~~~~l~~  172 (173)
T cd04155         162 GLQEGMNWVCK  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN00023 GTP-binding protein; Provisional

Probab=98.74  E-value=1.9e-08  Score=80.64  Aligned_cols=88  Identities=17%  Similarity=0.257  Sum_probs=60.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc----------CCCCcEEEEeeCCCCcCCC---c---cCHHHHHHHHHHcCCc--
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW----------LFPSGLRLVGNKNDDPQKK---V---VLTEDAQRFANQMGIQ--  120 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~----------~~~~~~ilvgnK~Dl~~~~---~---v~~~~~~~~a~~~~~~--  120 (177)
                      +.|+|++.||+++. |++++......          ..++|++|||||+||..++   .   +..+++++||+++++.  
T Consensus       113 VyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~  192 (334)
T PLN00023        113 VHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPS  192 (334)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCCCcc
Confidence            58999999999998 99888533210          1358999999999997642   3   3689999999998841  


Q ss_pred             --------------EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416         121 --------------LFETSAKDNINVEEMFMAITNLVLRSK  147 (177)
Q Consensus       121 --------------~~e~Sak~~~~v~~~f~~~~~~~~~~~  147 (177)
                                    -+.++||.+.==.|+.....+.+++++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (334)
T PLN00023        193 SEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRR  233 (334)
T ss_pred             ccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHH
Confidence                          123456655433445455555555443

>KOG0084|consensus

Probab=98.71  E-value=1.7e-08  Score=74.57  Aligned_cols=34  Identities=38%  Similarity=0.610  Sum_probs=30.1

Q ss_pred             CCCc-EEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQ-LFETSAKDNINVEEMFMAITNLVLRSKKEQ   34 (177)
Q Consensus         1 ~~~~-f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~   34 (177)
                      ++++ |+|||||++.||+++|+.|+..|++++...
T Consensus       144 ~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  144 LGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLH  178 (205)
T ss_pred             cCCcceeecccCCccCHHHHHHHHHHHHHHhcccC
Confidence            4688 999999999999999999999998876543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.71  E-value=1.2e-08  Score=74.30  Aligned_cols=83  Identities=19%  Similarity=0.093  Sum_probs=57.7

Q ss_pred             ccccchh------hhhcccc-hhhhhhhhhcc-----CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCC
Q psy1416          60 VCTVLNE------CAWLGCG-WMTICPIIYCW-----LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK  127 (177)
Q Consensus        60 ~~dit~~------~Sf~~~~-w~~~~~~~~~~-----~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak  127 (177)
                      .+|.++.      .++.... |...+......     ....|+++|+||+|+...+.+............+..++++||+
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK  160 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence            3677777      5777776 66555322111     1368999999999997655443333334445566789999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy1416         128 DNINVEEMFMAITNL  142 (177)
Q Consensus       128 ~~~~v~~~f~~~~~~  142 (177)
                      ++.|++++|..+++.
T Consensus       161 ~~~gl~~l~~~l~~~  175 (176)
T cd01881         161 TEEGLDELIRAIYEL  175 (176)
T ss_pred             hhcCHHHHHHHHHhh
Confidence            999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.70  E-value=4.4e-08  Score=70.06  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=46.2

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +.|+++|+||+|+.+.+.+..+ ...++..++.+++++||++|.|++++|..+.+.
T Consensus       101 ~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         101 GLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             CCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            6899999999999765555443 457788889999999999999999999988765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.69  E-value=1.3e-08  Score=72.45  Aligned_cols=79  Identities=18%  Similarity=0.121  Sum_probs=54.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++..+|.... |+..+... ....+.|+++|+||+|+.+...+  .+.....     .....+++++||++|.||+
T Consensus        74 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  150 (159)
T cd04159          74 VVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNID  150 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence            57888888998776 76655322 12247899999999999764322  2221111     1223578999999999999


Q ss_pred             HHHHHHHH
Q psy1416         134 EMFMAITN  141 (177)
Q Consensus       134 ~~f~~~~~  141 (177)
                      ++|..+++
T Consensus       151 ~l~~~l~~  158 (159)
T cd04159         151 IVLDWLIK  158 (159)
T ss_pred             HHHHHHhh
Confidence            99998865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.69  E-value=3e-08  Score=73.56  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=57.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH------------cCCcEEEecC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ------------MGIQLFETSA  126 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~------------~~~~~~e~Sa  126 (177)
                      +.|++++.+|.... |+..+.... ...+.|++||+||+|+..  .++.++......-            ....++++||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            47889999998886 776653211 124689999999999963  4566655543311            1235899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy1416         127 KDNINVEEMFMAITNL  142 (177)
Q Consensus       127 k~~~~v~~~f~~~~~~  142 (177)
                      ++|.|++++|..|...
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0092|consensus

Probab=98.68  E-value=1.4e-08  Score=74.68  Aligned_cols=30  Identities=47%  Similarity=0.605  Sum_probs=27.7

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      |++|||||||||.||+++|..|++.|....
T Consensus       141 gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  141 GLLFFETSAKTGENVNEIFQAIAEKLPCSD  170 (200)
T ss_pred             CCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence            789999999999999999999999997654

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.65  E-value=1e-07  Score=79.31  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=60.2

Q ss_pred             cccchh---hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416          61 CTVLNE---CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        61 ~dit~~---~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      .|+++.   +++.+.. |.+++..........|++||+||+||...    .+....+++.++.+++++||+++.||+++|
T Consensus       244 ID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~  319 (424)
T PRK12297        244 IDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQGLDELL  319 (424)
T ss_pred             EeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHH
Confidence            577654   6677765 77666422221236899999999998532    345566777777889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         137 MAITNLVLRS  146 (177)
Q Consensus       137 ~~~~~~~~~~  146 (177)
                      ..+++.+.+.
T Consensus       320 ~~L~~~l~~~  329 (424)
T PRK12297        320 YAVAELLEET  329 (424)
T ss_pred             HHHHHHHHhC
Confidence            9999877654

>cd04171 SelB SelB subfamily

Probab=98.65  E-value=4.9e-08  Score=70.12  Aligned_cols=54  Identities=17%  Similarity=0.155  Sum_probs=39.6

Q ss_pred             CcEEEEeeCCCCcCCC--ccCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKK--VVLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      .|++||+||+|+....  ....++..++...   .+.+++++||++|.||+++|..+.+
T Consensus       105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            3899999999997532  1122344444444   4678999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0394|consensus

Probab=98.62  E-value=7.4e-08  Score=70.55  Aligned_cols=32  Identities=41%  Similarity=0.562  Sum_probs=29.1

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKE   33 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~   33 (177)
                      ++||||||||++.||++||+.+++..+..+..
T Consensus       152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  152 NIPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             CceeEEecccccccHHHHHHHHHHHHHhccch
Confidence            58999999999999999999999999987643

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.61  E-value=4.9e-08  Score=82.58  Aligned_cols=81  Identities=15%  Similarity=0.010  Sum_probs=53.5

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--cCHHHH-HHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--VLTEDA-QRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--v~~~~~-~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      .|.++..|+..+.|+..+.     ..+.|+|||+||+||.....  ....+. ..++....++++++||++|.||+++|.
T Consensus       301 ~Da~~~~s~~~~~~~~~~~-----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~  375 (472)
T PRK03003        301 IDASEPISEQDQRVLSMVI-----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVP  375 (472)
T ss_pred             EeCCCCCCHHHHHHHHHHH-----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHH
Confidence            6666666666665544332     13689999999999964211  111111 122222347899999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         138 AITNLVLRS  146 (177)
Q Consensus       138 ~~~~~~~~~  146 (177)
                      .+++.+...
T Consensus       376 ~i~~~~~~~  384 (472)
T PRK03003        376 ALETALESW  384 (472)
T ss_pred             HHHHHHHHh
Confidence            999876543

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.56  E-value=2.9e-07  Score=69.65  Aligned_cols=87  Identities=24%  Similarity=0.122  Sum_probs=62.2

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHc---CCcEE
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQM---GIQLF  122 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~---~~~~~  122 (177)
                      ++|+++..++..+ . |+..+.....  ...|++|||||+||...+            .+........+...   ...++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL  161 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence            5888885555555 4 9877632221  469999999999998763            33444434333333   34499


Q ss_pred             EecCC--CCCCHHHHHHHHHHHHHHHHH
Q psy1416         123 ETSAK--DNINVEEMFMAITNLVLRSKK  148 (177)
Q Consensus       123 e~Sak--~~~~v~~~f~~~~~~~~~~~~  148 (177)
                      ++||+  ++.+|.++|..+++.+.+...
T Consensus       162 ~~s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         162 ETSAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             EeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            99999  999999999999999976543

>KOG0083|consensus

Probab=98.56  E-value=5.4e-08  Score=67.81  Aligned_cols=31  Identities=42%  Similarity=0.580  Sum_probs=28.5

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      ||+||+|||||+|.||+-+|..||+++.+..
T Consensus       133 y~ipfmetsaktg~nvd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  133 YGIPFMETSAKTGFNVDLAFLAIAEELKKLK  163 (192)
T ss_pred             HCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence            5899999999999999999999999987753

>KOG1707|consensus

Probab=98.49  E-value=5.9e-08  Score=81.88  Aligned_cols=86  Identities=23%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH-HHHHHHHcC-C-cEEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED-AQRFANQMG-I-QLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~-~~~~a~~~~-~-~~~e~Sak~~~~v~~  134 (177)
                      .+++++++|.+.+.  |+..+....+...++||||||||+|+.....-+.+. ...+..++. + .-+||||++..++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            37789999999996  998774333334689999999999997544333332 222333332 2 478999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         135 MFMAITNLVLR  145 (177)
Q Consensus       135 ~f~~~~~~~~~  145 (177)
                      +|+...+.++.
T Consensus       166 ~fYyaqKaVih  176 (625)
T KOG1707|consen  166 LFYYAQKAVIH  176 (625)
T ss_pred             hhhhhhheeec
Confidence            99999888764

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.48  E-value=4.4e-07  Score=63.14  Aligned_cols=80  Identities=35%  Similarity=0.485  Sum_probs=56.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH-HHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED-AQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~-~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|.++..++.... |+.... ........|+++|+||+|+.......... ...+....+.+++++||+.+.+++++|.
T Consensus        75 v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  153 (157)
T cd00882          75 VYDVTDRESFENVKEWLLLIL-INKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFE  153 (157)
T ss_pred             EEECcCHHHHHHHHHHHHHHH-HhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence            47788888888776 632211 22223578999999999997544332222 4455566678999999999999999999


Q ss_pred             HHH
Q psy1416         138 AIT  140 (177)
Q Consensus       138 ~~~  140 (177)
                      .++
T Consensus       154 ~l~  156 (157)
T cd00882         154 ELA  156 (157)
T ss_pred             HHh
Confidence            875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.47  E-value=2.6e-07  Score=80.16  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=48.9

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .+.|+++|+||+|+.+++.+. .+...+++..+++++++||++|.|++++|..+++.+
T Consensus        98 ~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437        98 LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999997665554 356788899999999999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.45  E-value=5.1e-07  Score=63.63  Aligned_cols=76  Identities=21%  Similarity=0.055  Sum_probs=52.0

Q ss_pred             cccchh-hhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          61 CTVLNE-CAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        61 ~dit~~-~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +|++.. .++....  |...+.....  .+.|+++|+||+|+...+ +.......+......+++++||++|.|++++|.
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~  157 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK  157 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence            555555 5555542  6554422221  278999999999997644 444444555555567899999999999999998


Q ss_pred             HH
Q psy1416         138 AI  139 (177)
Q Consensus       138 ~~  139 (177)
                      .+
T Consensus       158 ~l  159 (161)
T TIGR00231       158 IV  159 (161)
T ss_pred             Hh
Confidence            75

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01894 EngA1 EngA1 subfamily

Probab=98.45  E-value=3.5e-07  Score=65.13  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +.|+++|+||+|+......     .......+. .++++||++|.||+++|..+++.
T Consensus       105 ~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         105 KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            5899999999999764322     223334565 78999999999999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.45  E-value=4.2e-07  Score=76.31  Aligned_cols=74  Identities=15%  Similarity=0.003  Sum_probs=56.4

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      +.|+++..|+... |+..+.     ..+.|+++|+||+||...      +...+++.++.+|+++||++ .||+++|..+
T Consensus       289 V~D~s~~~s~~~~-~l~~~~-----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L  355 (442)
T TIGR00450       289 VLDASQPLTKDDF-LIIDLN-----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLL  355 (442)
T ss_pred             EEECCCCCChhHH-HHHHHh-----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHH
Confidence            4677777777765 765442     136799999999999643      22456677788999999998 6999999999


Q ss_pred             HHHHHHH
Q psy1416         140 TNLVLRS  146 (177)
Q Consensus       140 ~~~~~~~  146 (177)
                      .+.+.+.
T Consensus       356 ~~~i~~~  362 (442)
T TIGR00450       356 TQKINAF  362 (442)
T ss_pred             HHHHHHH
Confidence            9988764

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15494 era GTPase Era; Provisional

Probab=98.44  E-value=4.4e-07  Score=73.74  Aligned_cols=74  Identities=18%  Similarity=0.073  Sum_probs=53.0

Q ss_pred             cchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHH
Q psy1416          63 VLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        63 it~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++...+|....  |+..+..     .+.|++||+||+||...   ...+..+++...+  ..+|++||++|.||+++|..
T Consensus       139 vD~~~s~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~  210 (339)
T PRK15494        139 IDSLKSFDDITHNILDKLRS-----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEY  210 (339)
T ss_pred             EECCCCCCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHH
Confidence            45566777774  5544421     14567889999999643   2455666666554  57999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      ++..+.
T Consensus       211 L~~~l~  216 (339)
T PRK15494        211 ITSKAK  216 (339)
T ss_pred             HHHhCC
Confidence            988764

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.39  E-value=3.9e-07  Score=74.34  Aligned_cols=75  Identities=16%  Similarity=-0.036  Sum_probs=50.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ..|++++.++..+. |...+....  ..+.|+++|+||+|+.....+     ..+ .....+++++||++|.||+++|..
T Consensus       275 VvD~s~~~~~~~~~~~~~~L~~l~--~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~GI~eL~~~  346 (351)
T TIGR03156       275 VVDASDPDREEQIEAVEKVLEELG--AEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEGLDLLLEA  346 (351)
T ss_pred             EEECCCCchHHHHHHHHHHHHHhc--cCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCCHHHHHHH
Confidence            36777777777664 554432111  236799999999999653222     111 122346899999999999999998


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      +.+.
T Consensus       347 I~~~  350 (351)
T TIGR03156       347 IAER  350 (351)
T ss_pred             HHhh
Confidence            8754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01895 EngA2 EngA2 subfamily

Probab=98.39  E-value=1e-06  Score=63.55  Aligned_cols=77  Identities=16%  Similarity=0.063  Sum_probs=49.1

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-HHHHc----CCcEEEecCCCCCCHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-FANQM----GIQLFETSAKDNINVEEM  135 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a~~~----~~~~~e~Sak~~~~v~~~  135 (177)
                      .|.++..++....++..+.     ..+.|+++|+||+|+...+....++... ..+..    ..+++++||+++.|++++
T Consensus        92 ~d~~~~~~~~~~~~~~~~~-----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (174)
T cd01895          92 IDATEGITEQDLRIAGLIL-----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKL  166 (174)
T ss_pred             EeCCCCcchhHHHHHHHHH-----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHH
Confidence            5555555554433322221     1257999999999997654222332222 22333    368999999999999999


Q ss_pred             HHHHHHH
Q psy1416         136 FMAITNL  142 (177)
Q Consensus       136 f~~~~~~  142 (177)
                      |..+.+.
T Consensus       167 ~~~l~~~  173 (174)
T cd01895         167 FDAIDEV  173 (174)
T ss_pred             HHHHHHh
Confidence            9988763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.38  E-value=1e-06  Score=72.87  Aligned_cols=84  Identities=15%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             cccc---hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHH
Q psy1416          61 CTVL---NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEE  134 (177)
Q Consensus        61 ~dit---~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~  134 (177)
                      .|++   +.+.+.... |++++..........|++||+||+|+.....+ .+....+.+..+  ..++.+||+++.+|++
T Consensus       245 VD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIde  323 (390)
T PRK12298        245 IDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKE  323 (390)
T ss_pred             eccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHH
Confidence            4555   455666665 77766422211235799999999999754333 234444555544  4689999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         135 MFMAITNLVLR  145 (177)
Q Consensus       135 ~f~~~~~~~~~  145 (177)
                      ++..+++.+.+
T Consensus       324 Ll~~I~~~L~~  334 (390)
T PRK12298        324 LCWDLMTFIEE  334 (390)
T ss_pred             HHHHHHHHhhh
Confidence            99999988764

>KOG0097|consensus

Probab=98.37  E-value=5.8e-07  Score=63.30  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=30.9

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ   34 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~   34 (177)
                      +|+.|+|+|||+|.||+++|...++.|+++.+..
T Consensus       146 ngl~fle~saktg~nvedafle~akkiyqniqdg  179 (215)
T KOG0097|consen  146 NGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDG  179 (215)
T ss_pred             cCeEEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence            4789999999999999999999999999987653

>KOG0098|consensus

Probab=98.34  E-value=4.7e-07  Score=66.57  Aligned_cols=34  Identities=35%  Similarity=0.497  Sum_probs=30.9

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ   34 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~   34 (177)
                      ||+.|+|||||++.||+|||...+..|+++.+..
T Consensus       141 hgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g  174 (216)
T KOG0098|consen  141 HGLIFMETSAKTAENVEEAFINTAKEIYRKIQDG  174 (216)
T ss_pred             cCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999876543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.34  E-value=8.3e-07  Score=63.06  Aligned_cols=68  Identities=16%  Similarity=0.042  Sum_probs=48.5

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|++++.++.... |..        ....|+++|+||+|+.+....       .....+.+++++||+++.|+++++..+
T Consensus        88 ~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l  152 (157)
T cd04164          88 IDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEAL  152 (157)
T ss_pred             EECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHH
Confidence            5555555555443 211        246899999999999754432       334456789999999999999999998


Q ss_pred             HHHH
Q psy1416         140 TNLV  143 (177)
Q Consensus       140 ~~~~  143 (177)
                      ...+
T Consensus       153 ~~~~  156 (157)
T cd04164         153 LELA  156 (157)
T ss_pred             HHhh
Confidence            7643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.33  E-value=6.5e-07  Score=75.36  Aligned_cols=69  Identities=19%  Similarity=0.076  Sum_probs=49.9

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|.++..++.... |..        ..+.|+++|+||+||...+.+.        ...+.+++++||++|.||+++|..+
T Consensus       302 vD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L  365 (449)
T PRK05291        302 LDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAI  365 (449)
T ss_pred             ecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHH
Confidence            5555665555444 321        2368999999999997543321        3445689999999999999999999


Q ss_pred             HHHHHH
Q psy1416         140 TNLVLR  145 (177)
Q Consensus       140 ~~~~~~  145 (177)
                      .+.+..
T Consensus       366 ~~~l~~  371 (449)
T PRK05291        366 KELAFG  371 (449)
T ss_pred             HHHHhh
Confidence            987753

>PRK00098 GTPase RsgA; Reviewed

Probab=98.32  E-value=6.6e-07  Score=71.46  Aligned_cols=76  Identities=14%  Similarity=0.078  Sum_probs=55.0

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|++++.++... . |+..+..     .++|++||+||+||.+.+. ...+...+.+..+++++.+||+++.|++++|.
T Consensus        87 V~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~  160 (298)
T PRK00098         87 VFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGEGLDELKP  160 (298)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCccHHHHHh
Confidence            4788888777665 4 7755421     3689999999999964322 12233445566788999999999999999998


Q ss_pred             HHHH
Q psy1416         138 AITN  141 (177)
Q Consensus       138 ~~~~  141 (177)
                      .+..
T Consensus       161 ~l~g  164 (298)
T PRK00098        161 LLAG  164 (298)
T ss_pred             hccC
Confidence            7753

>PRK12288 GTPase RsgA; Reviewed

Probab=98.32  E-value=1.2e-06  Score=71.27  Aligned_cols=78  Identities=19%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc-cCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV-VLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~-v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +++++...||..+. |+..+.     ..++|++||+||+||..... ....+.....+..+++++++||+++.|++++|.
T Consensus       127 V~s~~p~~s~~~Ldr~L~~a~-----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~  201 (347)
T PRK12288        127 VSAVLPELSLNIIDRYLVACE-----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEA  201 (347)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH-----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHH
Confidence            36677888888887 975442     13688999999999964321 111222333456788999999999999999998


Q ss_pred             HHHHH
Q psy1416         138 AITNL  142 (177)
Q Consensus       138 ~~~~~  142 (177)
                      .+...
T Consensus       202 ~L~~k  206 (347)
T PRK12288        202 ALTGR  206 (347)
T ss_pred             HHhhC
Confidence            88654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.30  E-value=1.4e-06  Score=62.85  Aligned_cols=57  Identities=21%  Similarity=0.224  Sum_probs=38.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCH-HHHHHHHH------HcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLT-EDAQRFAN------QMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~-~~~~~~a~------~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      +.|+++|+||+|+.....-.. +....+..      ....+++++||++|.||+++|..+.+..
T Consensus       102 ~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         102 NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            679999999999964321111 11111111      1136799999999999999999998754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.30  E-value=1.7e-06  Score=72.22  Aligned_cols=58  Identities=19%  Similarity=0.099  Sum_probs=40.9

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHH-HHH----cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQ----MGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~-a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +.|+++|+||+||.... ...++.... ...    .+++++++||++|.||+++|..+.+.+..
T Consensus       283 ~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       283 GKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            68999999999997211 112222222 122    24789999999999999999999886654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.29  E-value=1.5e-06  Score=73.73  Aligned_cols=60  Identities=25%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ...|++||+||+||.+.+.+. +.........++++|++||+++.||++++..|++.+...
T Consensus       283 ~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        283 AERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             cCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            367999999999997543322 222223344578999999999999999999999887654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.28  E-value=1e-06  Score=69.99  Aligned_cols=75  Identities=15%  Similarity=0.021  Sum_probs=55.0

Q ss_pred             ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      .+|++++. |+..+. |+..+..     .++|++||+||+||....  .......+....+.+++.+||+++.|+++++.
T Consensus        85 V~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~  157 (287)
T cd01854          85 VVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTGEGLDELRE  157 (287)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCCccHHHHHh
Confidence            37777777 788776 8865531     268999999999996542  11222333455788999999999999999998


Q ss_pred             HHHH
Q psy1416         138 AITN  141 (177)
Q Consensus       138 ~~~~  141 (177)
                      .+..
T Consensus       158 ~L~~  161 (287)
T cd01854         158 YLKG  161 (287)
T ss_pred             hhcc
Confidence            8764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK11058 GTPase HflX; Provisional

Probab=98.28  E-value=1.7e-06  Score=72.39  Aligned_cols=79  Identities=16%  Similarity=-0.032  Sum_probs=53.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~  137 (177)
                      +.|.+++.++.++. |...+....  ..+.|+++|+||+|+..... ...   . ....+.+ ++++||++|.||+++|.
T Consensus       283 VvDaS~~~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~~~-~~~---~-~~~~~~~~~v~ISAktG~GIdeL~e  355 (426)
T PRK11058        283 VVDAADVRVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDDFE-PRI---D-RDEENKPIRVWLSAQTGAGIPLLFQ  355 (426)
T ss_pred             EEeCCCccHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCchh-HHH---H-HHhcCCCceEEEeCCCCCCHHHHHH
Confidence            47888888888774 433332111  13689999999999964311 111   1 1124555 58999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         138 AITNLVLR  145 (177)
Q Consensus       138 ~~~~~~~~  145 (177)
                      .+.+.+..
T Consensus       356 ~I~~~l~~  363 (426)
T PRK11058        356 ALTERLSG  363 (426)
T ss_pred             HHHHHhhh
Confidence            99988754

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.28  E-value=3.8e-06  Score=61.86  Aligned_cols=80  Identities=15%  Similarity=0.065  Sum_probs=55.5

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH------cCCcEEEecCCCCCCHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ------MGIQLFETSAKDNINVE  133 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~------~~~~~~e~Sak~~~~v~  133 (177)
                      .|.++.+.|.... .+..+.... ...++|+++++||.|+.+  .++.++.......      ..+..+.+||++|+||.
T Consensus        89 vDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~  165 (175)
T PF00025_consen   89 VDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD  165 (175)
T ss_dssp             EETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred             Eecccceeecccccchhhhcchh-hcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence            6666777666664 555442221 224799999999999874  3455555544332      23458899999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         134 EMFMAITNLV  143 (177)
Q Consensus       134 ~~f~~~~~~~  143 (177)
                      +.|..|.+.|
T Consensus       166 e~l~WL~~~~  175 (175)
T PF00025_consen  166 EGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.26  E-value=2.3e-06  Score=65.95  Aligned_cols=51  Identities=24%  Similarity=0.096  Sum_probs=41.1

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ..+|+++|+||+|+.     ..+++..++..  ..++++||++|.|++++|..+.+.+
T Consensus       175 ~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         175 VYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            357999999999985     34555566654  3589999999999999999998754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG1673|consensus

Probab=98.25  E-value=1.2e-06  Score=62.73  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC--CCc---cCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ--KKV---VLTEDAQRFANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~--~~~---v~~~~~~~~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      ..|+|.+.++.++. |+++.   ++....+.-||||+|.|+--  .+.   --..+++.+|+-.++..|.+|+..+.||.
T Consensus        99 mFDLt~r~TLnSi~~WY~QA---r~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQA---RGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEecCchHHHHHHHHHHHHH---hccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            38999999999997 98655   33334455589999999731  111   11347788999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      .+|.-+..++...
T Consensus       176 KIFK~vlAklFnL  188 (205)
T KOG1673|consen  176 KIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999998888754

>KOG0080|consensus

Probab=98.25  E-value=1.1e-06  Score=63.17  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      |++.|+|+|||+..||+.+|+.|+.+|++-
T Consensus       147 h~~LFiE~SAkt~~~V~~~FeelveKIi~t  176 (209)
T KOG0080|consen  147 HRCLFIECSAKTRENVQCCFEELVEKIIET  176 (209)
T ss_pred             hCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999864

>cd01855 YqeH YqeH

Probab=98.24  E-value=4.9e-06  Score=61.93  Aligned_cols=57  Identities=30%  Similarity=0.312  Sum_probs=42.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCC---cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGI---QLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~---~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|++||+||+||.... ...+....+.     +..+.   .++.+||++|.||+++|..+.+.+.
T Consensus        61 ~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          61 NNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            57999999999996532 3344444444     23333   5899999999999999999988663

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00436 era GTP-binding protein Era

Probab=98.21  E-value=2.8e-06  Score=66.90  Aligned_cols=57  Identities=19%  Similarity=0.072  Sum_probs=42.6

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|+++|+||+|+..... ..+....++...+. +++++||++|.||++++..+.+.+.
T Consensus       107 ~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       107 KRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             CCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            679999999999964322 22344455555444 7999999999999999999877654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.20  E-value=2.1e-06  Score=64.76  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             CcEEEEeeCCCCcCCCcc--CHHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVV--LTEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .|++||+||+||......  ..++...+...+   +.+++++||++|.||+++|..+.+.+
T Consensus       138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            478999999999643211  123344444433   56799999999999999999988654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.20  E-value=1.8e-06  Score=73.18  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  140 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~  140 (177)
                      .|+++..++....|...+. .    .+.|++||+||+|+...   ..+....+....+ ..+++||++|.||+++|..++
T Consensus       125 vD~~~~~s~~~~~i~~~l~-~----~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~gi~eL~~~i~  195 (472)
T PRK03003        125 VDATVGATATDEAVARVLR-R----SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGRGVGDLLDAVL  195 (472)
T ss_pred             EECCCCCCHHHHHHHHHHH-H----cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCCCcHHHHHHHH
Confidence            6666665554333443332 1    36899999999999642   1222222322222 357999999999999999999


Q ss_pred             HHHHH
Q psy1416         141 NLVLR  145 (177)
Q Consensus       141 ~~~~~  145 (177)
                      ..+.+
T Consensus       196 ~~l~~  200 (472)
T PRK03003        196 AALPE  200 (472)
T ss_pred             hhccc
Confidence            88755

>PRK12289 GTPase RsgA; Reviewed

Probab=98.20  E-value=2.1e-06  Score=70.07  Aligned_cols=76  Identities=17%  Similarity=0.066  Sum_probs=51.0

Q ss_pred             ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      .+|++++. ++..+. |+..+.     ..++|++||+||+||.....+  +........+++.++.+||+++.||++++.
T Consensus        96 V~d~~~p~~~~~~LdR~L~~a~-----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~  168 (352)
T PRK12289         96 VFALAEPPLDPWQLSRFLVKAE-----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGIGLEALLE  168 (352)
T ss_pred             EEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHHHhh
Confidence            47777654 333444 664331     136899999999999643211  122223346788999999999999999998


Q ss_pred             HHHHH
Q psy1416         138 AITNL  142 (177)
Q Consensus       138 ~~~~~  142 (177)
                      .+...
T Consensus       169 ~L~~k  173 (352)
T PRK12289        169 QLRNK  173 (352)
T ss_pred             hhccc
Confidence            88754

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.18  E-value=6.3e-06  Score=67.55  Aligned_cols=65  Identities=23%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy1416          74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      |..++....   .+.|++||+||+||.. +.+..++...|    ++++++   .++++||++|.||+++|..+.+.
T Consensus        80 ~~~~l~~~~---~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597        80 LIPELKRFV---GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             ccHHHHHHh---CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            776663221   2578999999999965 34445555543    566776   48999999999999999988653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.16  E-value=4.8e-06  Score=72.36  Aligned_cols=76  Identities=20%  Similarity=0.114  Sum_probs=53.1

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc---EEEecCCCCCCHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ---LFETSAKDNINVEEMF  136 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~Sak~~~~v~~~f  136 (177)
                      .|.++..++.... |...+.      .++|+++|+||+|+....  ..+...++++.+++.   ++++||++|.||+++|
T Consensus       101 vDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Ll  172 (595)
T TIGR01393       101 VDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILASAKTGIGIEEIL  172 (595)
T ss_pred             ecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHH
Confidence            5666655555554 533221      367999999999996432  223345566666653   8999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         137 MAITNLVL  144 (177)
Q Consensus       137 ~~~~~~~~  144 (177)
                      ..+++.+.
T Consensus       173 e~I~~~lp  180 (595)
T TIGR01393       173 EAIVKRVP  180 (595)
T ss_pred             HHHHHhCC
Confidence            99987764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.13  E-value=4.7e-06  Score=61.13  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=42.0

Q ss_pred             CCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHH--------------cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQ--------------MGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~--------------~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .+.|+++|+||+|+.....+  ..++..+..+.              ...+++++||++|.|++++|..+.+.+
T Consensus       113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            37899999999999753221  12233333333              346799999999999999999988765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.12  E-value=4.1e-06  Score=72.66  Aligned_cols=76  Identities=16%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             cccch---hhhhcccchhhhhhhhhccCCCCc-EEEEeeCCCCcCCCcc--CHHHHHHHHHHc----CCcEEEecCCCCC
Q psy1416          61 CTVLN---ECAWLGCGWMTICPIIYCWLFPSG-LRLVGNKNDDPQKKVV--LTEDAQRFANQM----GIQLFETSAKDNI  130 (177)
Q Consensus        61 ~dit~---~~Sf~~~~w~~~~~~~~~~~~~~~-~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~----~~~~~e~Sak~~~  130 (177)
                      .|.++   .++++++.|+...        ++| +++|+||+|+.+...+  ..++...+....    +++++++||++|.
T Consensus        81 VDa~~G~~~qT~ehl~il~~l--------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475        81 VDADEGVMTQTGEHLAVLDLL--------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             EECCCCCcHHHHHHHHHHHHc--------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            55555   5666665543222        566 9999999999764432  234555666554    4789999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy1416         131 NVEEMFMAITNLVL  144 (177)
Q Consensus       131 ~v~~~f~~~~~~~~  144 (177)
                      ||++++..+...+.
T Consensus       153 GI~eL~~~L~~l~~  166 (581)
T TIGR00475       153 GIGELKKELKNLLE  166 (581)
T ss_pred             CchhHHHHHHHHHH
Confidence            99999988876543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.11  E-value=6.8e-06  Score=62.16  Aligned_cols=55  Identities=16%  Similarity=0.085  Sum_probs=42.0

Q ss_pred             CcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      .|.++|+||+|+........++.....++.+  .+++++||++|.||+++|..+.+.
T Consensus       149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999997543333444555555544  789999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01889 SelB_euk SelB subfamily

Probab=98.10  E-value=4.9e-06  Score=61.98  Aligned_cols=58  Identities=21%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             CCcEEEEeeCCCCcCCC--ccCHHHHHHHHH-------HcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKK--VVLTEDAQRFAN-------QMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~-------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|+++|+||+|+....  ....++......       ..+++++.+||++|.|+++++..+...+.
T Consensus       120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            56999999999996322  112223322211       13578999999999999999999988765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00101 ureG urease accessory protein UreG

Probab=98.09  E-value=8.8e-06  Score=61.33  Aligned_cols=53  Identities=19%  Similarity=-0.008  Sum_probs=39.3

Q ss_pred             EEEeeCCCCcCCCccCHHHHHHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          91 RLVGNKNDDPQKKVVLTEDAQRFANQ--MGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        91 ilvgnK~Dl~~~~~v~~~~~~~~a~~--~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ++|+||+|+.....-..+...+.++.  .+.++|++||++|.||+++|..+.+.+
T Consensus       141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       141 LLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             EEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            89999999974211223344444444  457899999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd04163 Era Era subfamily

Probab=98.03  E-value=1e-05  Score=57.64  Aligned_cols=56  Identities=25%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      ..|+++|+||+|+........+....++...+ .+++++|++++.+++++|..+.+.
T Consensus       111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         111 KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            57899999999997433322333444444443 689999999999999999988754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.02  E-value=1.2e-05  Score=59.69  Aligned_cols=57  Identities=14%  Similarity=0.067  Sum_probs=42.3

Q ss_pred             CCcEEEEeeCCCCcCCCc--cCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKV--VLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      +.|+++|+||+|+.....  ...++...+.......++++||++|.|++++|..+.+.+
T Consensus       135 ~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        135 GIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            678999999999965322  122334444444467899999999999999999887655

>cd00880 Era_like Era (E

Probab=98.02  E-value=7.9e-06  Score=57.45  Aligned_cols=57  Identities=18%  Similarity=0.055  Sum_probs=41.6

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHH---HHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTE---DAQRFANQMGIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~---~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      ...|+++|+||+|+.....+...   .........+.+++++||+++.|+++++..+.+.
T Consensus       103 ~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         103 RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            47899999999999754322211   1223333456789999999999999999988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.98  E-value=2.2e-06  Score=58.68  Aligned_cols=63  Identities=19%  Similarity=0.046  Sum_probs=44.3

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++++||.++ |+..+..  ....++|++++|||.|+...+.+..+++        ..|+++||++|.||.
T Consensus        53 v~~~~~~~s~~~~-~~~~i~~--~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       53 CWRVDDRDSADNK-NVPEVLV--GNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEEccCHHHHHHH-hHHHHHh--cCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            4778888888776 8765532  2234689999999999965444444333        356788999999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd01859 MJ1464 MJ1464

Probab=97.96  E-value=1.4e-05  Score=57.54  Aligned_cols=56  Identities=27%  Similarity=0.270  Sum_probs=41.0

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|+++|.||+|+......  .....+....+.+++.+||+++.|+++++..+.+.+.
T Consensus        41 ~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          41 GKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             CCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence            5799999999999532111  1111233445678999999999999999998887664

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=97.94  E-value=3.3e-05  Score=63.48  Aligned_cols=65  Identities=25%  Similarity=0.362  Sum_probs=46.3

Q ss_pred             hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy1416          74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      |...+....   .+.|++||+||+||.. +.+..++...|    ++.+++   .++.+||+++.||+++|..+.+.
T Consensus        86 ~~~~L~~~~---~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796         86 WIPGLHRFV---GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             hhHHHHHHh---CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            666553222   2568999999999964 33444444444    555665   57999999999999999998654

>PRK00089 era GTPase Era; Reviewed

Probab=97.93  E-value=2.3e-05  Score=62.26  Aligned_cols=58  Identities=24%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|+++|+||+|+...+.........+.+..+ ..++.+||+++.|+++++..+.+.+.
T Consensus       113 ~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        113 KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            57999999999997433333344555555444 57999999999999999999988764

>KOG0094|consensus

Probab=97.93  E-value=8.7e-06  Score=60.39  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=27.5

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      +|+.|+|||||+|.||..+|..++..+...+
T Consensus       158 l~a~f~etsak~g~NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  158 LNAEFIETSAKAGENVKQLFRRIAAALPGME  188 (221)
T ss_pred             hCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence            4678999999999999999999999887654

>KOG0086|consensus

Probab=97.91  E-value=1.2e-05  Score=57.50  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=28.8

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKE   33 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~   33 (177)
                      .+.|+||||++|.||+|+|...++.|+.+...
T Consensus       145 el~flETSa~TGeNVEEaFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  145 ELMFLETSALTGENVEEAFLKCARTILNKIES  176 (214)
T ss_pred             ceeeeeecccccccHHHHHHHHHHHHHHHHhh
Confidence            36799999999999999999999999987654

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=97.91  E-value=5.7e-06  Score=59.92  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=41.9

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      +.|+++|.||+|+..++.+.. +...+.+..+++.+.+||+++.|+++++..+
T Consensus       105 g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  105 GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            689999999999875444333 4667888899999999999999999998764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0081|consensus

Probab=97.91  E-value=1.9e-05  Score=56.79  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE   36 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~~~   36 (177)
                      +|+|||||||-+|.||+++.+.|...|++++.....
T Consensus       154 yglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~  189 (219)
T KOG0081|consen  154 YGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVE  189 (219)
T ss_pred             hCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999998765543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.90  E-value=2.9e-05  Score=67.44  Aligned_cols=53  Identities=17%  Similarity=0.163  Sum_probs=39.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC---------CcEEEecCCCCCCHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG---------IQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~---------~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      .++|+++++||+|+...   ..++.......++         .+|+++||++|.||+++|..+..
T Consensus       186 ~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       186 ANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             cCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            36899999999999642   2344444433332         46999999999999999998874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.88  E-value=2.2e-05  Score=69.73  Aligned_cols=78  Identities=15%  Similarity=0.030  Sum_probs=49.4

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-HHHHc----CCcEEEecCCCCCCHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-FANQM----GIQLFETSAKDNINVEEM  135 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a~~~----~~~~~e~Sak~~~~v~~~  135 (177)
                      .|.++..++..+.|+..+.     ..+.|++||+||+||.+...  .+.... +....    ..+.+.+||++|.||+++
T Consensus       540 iDat~~~s~~~~~i~~~~~-----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L  612 (712)
T PRK09518        540 FDASQPISEQDLKVMSMAV-----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRL  612 (712)
T ss_pred             EECCCCCCHHHHHHHHHHH-----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHH
Confidence            4555555555554333221     13689999999999964321  111111 11111    246789999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         136 FMAITNLVLR  145 (177)
Q Consensus       136 f~~~~~~~~~  145 (177)
                      |..+.+.+.+
T Consensus       613 ~~~i~~~~~~  622 (712)
T PRK09518        613 APAMQEALES  622 (712)
T ss_pred             HHHHHHHHHH
Confidence            9999987765

>cd04120 Rab12 Rab12 subfamily

Probab=97.87  E-value=2.1e-05  Score=59.40  Aligned_cols=30  Identities=40%  Similarity=0.758  Sum_probs=27.0

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      ++.|+|||||+|.||+++|..|++.+++..
T Consensus       137 ~~~~~etSAktg~gV~e~F~~l~~~~~~~~  166 (202)
T cd04120         137 GMRFCEASAKDNFNVDEIFLKLVDDILKKM  166 (202)
T ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.86  E-value=2.3e-05  Score=65.62  Aligned_cols=58  Identities=21%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ..|+++|+||+|+.+... ..+....+...    ..++++++||++|.||+++|..+.+....
T Consensus       284 ~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        284 GRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            579999999999974321 11111112222    24789999999999999999998875543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=97.81  E-value=3.3e-05  Score=64.45  Aligned_cols=57  Identities=21%  Similarity=0.267  Sum_probs=41.4

Q ss_pred             CcEEEEeeCCCCcCCCcc--CHHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVV--LTEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .|+++|+||+|+.+....  ..++...++...   +.+++++||++|.||+++|..+...+.
T Consensus       140 ~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        140 KNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             CcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            368999999999753221  123444454432   478999999999999999999887653

>KOG0087|consensus

Probab=97.81  E-value=4.1e-05  Score=57.45  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ   34 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~   34 (177)
                      |+.|+||||.++.||++||..+..+|++.....
T Consensus       150 ~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  150 GLFFLETSALDATNVEKAFERVLTEIYKIVSKK  182 (222)
T ss_pred             CceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999876543

>KOG0088|consensus

Probab=97.80  E-value=3.6e-05  Score=55.39  Aligned_cols=30  Identities=37%  Similarity=0.613  Sum_probs=27.0

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      |..|+|||||+|.+|.++|+.|...++...
T Consensus       149 GA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  149 GALYMETSAKDNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             chhheecccccccCHHHHHHHHHHHHHHHh
Confidence            678999999999999999999999887643

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.78  E-value=3.7e-05  Score=54.90  Aligned_cols=56  Identities=13%  Similarity=0.095  Sum_probs=38.9

Q ss_pred             CCcEEEEeeCCCCcCCCc--cCHHHHHHHHH--HcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKV--VLTEDAQRFAN--QMGIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~--~~~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      ..|+++|+||+|+.....  ..........+  ....+++++||+++.++++++..+.+.
T Consensus       110 ~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         110 GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            478999999999853221  11122222232  234679999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.77  E-value=6.3e-05  Score=56.35  Aligned_cols=30  Identities=43%  Similarity=0.589  Sum_probs=26.8

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLVLRSKK   32 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~   32 (177)
                      +.|+|||||+|.||+++|..|++.+++...
T Consensus       143 ~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~  172 (201)
T cd04107         143 IGWFETSAKEGINIEEAMRFLVKNILANDK  172 (201)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHhch
Confidence            579999999999999999999999887543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.75  E-value=4.1e-05  Score=68.39  Aligned_cols=56  Identities=23%  Similarity=0.215  Sum_probs=39.2

Q ss_pred             CCCcEEEEeeCCCCcCCC--ccCHH--HHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKK--VVLTE--DAQRFANQMG--IQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~--~v~~~--~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      .++|+|||+||+|+....  .+..+  +...++..++  ++|+++||++|.||+++|..+..
T Consensus       388 ~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        388 AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence            368999999999996421  11111  1111234444  68999999999999999998875

>PRK05433 GTP-binding protein LepA; Provisional

Probab=97.74  E-value=9.2e-05  Score=64.57  Aligned_cols=57  Identities=28%  Similarity=0.265  Sum_probs=42.8

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc---EEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ---LFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ++|+++|+||+|+....  ......++....++.   ++.+||++|.||+++|..+++.+..
T Consensus       126 ~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        126 DLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             CCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            68999999999996432  122234455555654   8999999999999999999887653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.72  E-value=9.1e-05  Score=65.74  Aligned_cols=55  Identities=20%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHH-------HHHcC--CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRF-------ANQMG--IQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~-------a~~~~--~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .++|+|||+||+|+....   .++....       ...++  ++|+++||++|.||+++|..++...
T Consensus       346 ~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        346 ANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             cCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            368999999999997532   2222221       23334  6899999999999999999887653

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.71  E-value=3.7e-05  Score=59.29  Aligned_cols=31  Identities=23%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             CCC-cEEEeccCCCC-CHHHHHHHHHHHHHHHH
Q psy1416           1 MGI-QLFETSAKDNI-NVEEMFMAITNLVLRSK   31 (177)
Q Consensus         1 ~~~-~f~EtSAk~~~-nV~~~F~~l~~~i~~~~   31 (177)
                      +|+ .|||||||+|. ||+++|..+++.++++.
T Consensus       159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence            366 59999999998 89999999999987653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04111 Rab39 Rab39 subfamily

Probab=97.70  E-value=7.8e-05  Score=56.52  Aligned_cols=32  Identities=38%  Similarity=0.516  Sum_probs=28.3

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKK   32 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~   32 (177)
                      ++++|+||||++|.||+++|..|++.+++.+.
T Consensus       139 ~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~  170 (211)
T cd04111         139 LGMKYIETSARTGDNVEEAFELLTQEIYERIK  170 (211)
T ss_pred             hCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            35789999999999999999999999887643

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.69  E-value=7.1e-05  Score=62.69  Aligned_cols=50  Identities=28%  Similarity=0.416  Sum_probs=38.0

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      +.|++||+||+|+...    .+...++ ...+.. ++++||++|.||+++|..++.
T Consensus       109 ~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        109 NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            6799999999997542    1222222 345654 899999999999999999987

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.68  E-value=7.3e-05  Score=55.69  Aligned_cols=49  Identities=16%  Similarity=0.162  Sum_probs=34.5

Q ss_pred             CCcEEEEeeCCCCcCCCc-cCHHHHHHHHHH-------cCCcEEEecCCCCCCHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKV-VLTEDAQRFANQ-------MGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~-v~~~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++||+||+|+...+. ...++...+...       .+++++++||++|.|+.+.
T Consensus       117 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         117 GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            689999999999965432 123444444422       3678999999999888543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.66  E-value=3.7e-05  Score=56.59  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=33.7

Q ss_pred             CCcEEEEeeCCCCcCCC--ccCHHHHHHHHHHcC--CcEEEecCCCCCCHH
Q psy1416          87 PSGLRLVGNKNDDPQKK--VVLTEDAQRFANQMG--IQLFETSAKDNINVE  133 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~  133 (177)
                      +.|+++|+||+|+....  ....++.+.+....+  ..+|++||++|+||+
T Consensus       129 ~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       129 GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            68999999999996432  222344555555543  479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.66  E-value=8e-05  Score=65.09  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=40.3

Q ss_pred             Cc-EEEEeeCCCCcCCCccC--HHHHHHHHHHcC---CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          88 SG-LRLVGNKNDDPQKKVVL--TEDAQRFANQMG---IQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        88 ~~-~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~---~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      +| ++||.||+|+.++..+.  .++...+....+   .+++.+||++|.||++++..+....
T Consensus       104 i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        104 NPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            44 68999999997532221  234445555444   6799999999999999998887644

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.65  E-value=2.5e-05  Score=53.24  Aligned_cols=39  Identities=21%  Similarity=0.024  Sum_probs=27.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKND   98 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~D   98 (177)
                      ++|+++..||..+. |+..+........++|++|||||.|
T Consensus        80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            48999999999973 3333332333345699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.64  E-value=5.2e-05  Score=63.47  Aligned_cols=77  Identities=16%  Similarity=0.021  Sum_probs=47.7

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCc----cCHHHHHHHHHHcC-----CcEEEecCCCCC
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV----VLTEDAQRFANQMG-----IQLFETSAKDNI  130 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~  130 (177)
                      +.|.++.+++....|...+..... ....|++||+||+|+.+...    ...++...+++..+     ++|+++||++|.
T Consensus       115 VvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~  193 (426)
T TIGR00483       115 VVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGD  193 (426)
T ss_pred             EEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccc
Confidence            367777765533333221110111 12357999999999964211    12356666777665     579999999999


Q ss_pred             CHHHHHH
Q psy1416         131 NVEEMFM  137 (177)
Q Consensus       131 ~v~~~f~  137 (177)
                      ||++++.
T Consensus       194 ni~~~~~  200 (426)
T TIGR00483       194 NVIKKSE  200 (426)
T ss_pred             ccccccc
Confidence            9998664

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.62  E-value=0.00014  Score=65.15  Aligned_cols=56  Identities=14%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      +.|+++|.||+|+.+++.+. .+...+++.+|++++.+||++|.||+++...+.+..
T Consensus       112 giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        112 GIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            68999999999997655553 466788899999999999999999999988877643

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.58  E-value=8.6e-05  Score=55.96  Aligned_cols=29  Identities=28%  Similarity=0.492  Sum_probs=26.6

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      ++.|+|||||+|.||+++|..|++.+++.
T Consensus       128 ~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      128 NLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            67899999999999999999999988654

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03118 Rab family protein; Provisional

Probab=97.57  E-value=0.00019  Score=54.18  Aligned_cols=29  Identities=31%  Similarity=0.422  Sum_probs=26.7

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      +++|+|+||++|.||+++|..|++.++..
T Consensus       151 ~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        151 GCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            57899999999999999999999998764

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=97.56  E-value=0.00012  Score=61.05  Aligned_cols=57  Identities=23%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             CcEEEEeeCCCCcCCCc--cCHHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKV--VLTEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .|+++|+||+|+.+...  ...++...+....   +++++++||++|.|+++++..|...+.
T Consensus       135 ~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       135 KNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             CeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            36899999999975322  1233444444443   568999999999999999999887553

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PLN03108 Rab family protein; Provisional

Probab=97.55  E-value=0.00019  Score=54.36  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=28.6

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKK   32 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~   32 (177)
                      ++++|+|+||++|.||+++|..+++.++++..
T Consensus       141 ~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~  172 (210)
T PLN03108        141 HGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQ  172 (210)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            36789999999999999999999999987654

>PTZ00099 rab6; Provisional

Probab=97.55  E-value=6e-05  Score=55.60  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      ++.|+|||||+|.||+++|..|++.+...
T Consensus       116 ~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099        116 NTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            56799999999999999999999988653

>KOG0395|consensus

Probab=97.54  E-value=8.9e-05  Score=55.75  Aligned_cols=30  Identities=37%  Similarity=0.463  Sum_probs=27.0

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      |+++|+|||||.+.||+++|..|.+.+...
T Consensus       138 ~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~  167 (196)
T KOG0395|consen  138 WGCAFIETSAKLNYNVDEVFYELVREIRLP  167 (196)
T ss_pred             cCCcEEEeeccCCcCHHHHHHHHHHHHHhh
Confidence            578999999999999999999999987544

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.54  E-value=0.00037  Score=49.66  Aligned_cols=52  Identities=25%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~~  139 (177)
                      +.|+|-|.+|+|+... ....+.++++.+..|+. .|++|+.+|+||+++...|
T Consensus        89 ~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   89 NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence            4689999999999832 23567888888888874 7999999999999998876

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN03110 Rab GTPase; Provisional

Probab=97.52  E-value=0.00022  Score=54.17  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=27.9

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      ++++|+||||++|.||+++|..|+..|.+..
T Consensus       147 ~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~  177 (216)
T PLN03110        147 EGLSFLETSALEATNVEKAFQTILLEIYHII  177 (216)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            3688999999999999999999999998754

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.52  E-value=0.00023  Score=51.26  Aligned_cols=57  Identities=25%  Similarity=0.134  Sum_probs=39.3

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|+++|.||+||..+..+ .+-...+....+...+.+||++|.++++++..+.....
T Consensus        29 ~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          29 GKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             CCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHhH
Confidence            6899999999999543211 01111232334556889999999999999988876644

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.51  E-value=0.00022  Score=59.53  Aligned_cols=54  Identities=24%  Similarity=0.306  Sum_probs=41.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +.|++||+||+|+......    ..+ ...++. .++++||++|.||+++|..+.+.+..
T Consensus       107 ~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       107 GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence            6789999999998754321    122 345666 69999999999999999999877644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.50  E-value=0.00018  Score=53.37  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             CCcEEEEeeCCCCcCCCcc-CHHHHH-HHHHHcC------CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVV-LTEDAQ-RFANQMG------IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v-~~~~~~-~~a~~~~------~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ++|+++|.||+|+...+.. ..++.. .+.+..+      .+++.+||++|.||++++..+.+.+.
T Consensus       122 ~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  122 GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            6889999999999732110 011222 3333332      46999999999999999998887653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0073|consensus

Probab=97.47  E-value=0.00051  Score=49.74  Aligned_cols=84  Identities=19%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH------HHHHHHHHcCCcEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE------DAQRFANQMGIQLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~------~~~~~a~~~~~~~~e~Sak~~~~v  132 (177)
                      +-|..|+..|+.+. -+..+.. ....-..|++|++||.|+..  .++.+      +...+++....+.+-|||.+|+++
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            46667777777764 3433311 11112579999999999973  22322      334556778899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1416         133 EEMFMAITNLVLRS  146 (177)
Q Consensus       133 ~~~f~~~~~~~~~~  146 (177)
                      .+.|..++..+..+
T Consensus       167 ~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  167 LEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988774

>cd04110 Rab35 Rab35 subfamily

Probab=97.44  E-value=0.00024  Score=53.14  Aligned_cols=31  Identities=81%  Similarity=1.087  Sum_probs=27.8

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK   32 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~   32 (177)
                      ++.||||||++|.||+++|..|++.+++...
T Consensus       141 ~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~  171 (199)
T cd04110         141 GISLFETSAKENINVEEMFNCITELVLRAKK  171 (199)
T ss_pred             CCEEEEEECCCCcCHHHHHHHHHHHHHHhhh
Confidence            5789999999999999999999999987543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.44  E-value=0.00015  Score=55.30  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=26.4

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      ++.|||||||+|.||+++|..|++.++..
T Consensus       146 ~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        146 NLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            57899999999999999999999988654

>KOG0095|consensus

Probab=97.39  E-value=5.3e-05  Score=54.03  Aligned_cols=31  Identities=29%  Similarity=0.517  Sum_probs=27.3

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK   32 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~   32 (177)
                      .+.|+|||||+..||+..|+.||-++...+.
T Consensus       143 dmyfletsakea~nve~lf~~~a~rli~~ar  173 (213)
T KOG0095|consen  143 DMYFLETSAKEADNVEKLFLDLACRLISEAR  173 (213)
T ss_pred             hhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            3679999999999999999999999887654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.39  E-value=0.00037  Score=62.05  Aligned_cols=56  Identities=18%  Similarity=0.168  Sum_probs=39.8

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      .+.|++||+||+|+....   ......+....+ ..|++||++|.||+++|..++..+..
T Consensus       382 ~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        382 AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCCchHHHHHHHHhccc
Confidence            368999999999986431   111222222222 36789999999999999999988754

>cd01856 YlqF YlqF

Probab=97.24  E-value=0.00087  Score=49.03  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=38.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|+++|.||+||.....+  ....++.+..+..++.+||+++.|++++...+...+.
T Consensus        46 ~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          46 NKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            4689999999999643211  1111222333456899999999999999888877653

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=97.19  E-value=0.00064  Score=48.94  Aligned_cols=51  Identities=16%  Similarity=0.136  Sum_probs=35.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc----CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM----GIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~----~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +.|+++|.||+||..+.     +...+...+    ....+.+||+.+.|++++...+...
T Consensus        39 ~~p~ilVlNKiDl~~~~-----~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~   93 (157)
T cd01858          39 HKHLIFVLNKCDLVPTW-----VTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQF   93 (157)
T ss_pred             CCCEEEEEEchhcCCHH-----HHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHH
Confidence            57999999999996432     222333332    2224679999999999888777553

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.18  E-value=0.00061  Score=48.23  Aligned_cols=43  Identities=19%  Similarity=0.050  Sum_probs=31.5

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCC
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNIN  131 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~  131 (177)
                      +.|+++|.||+||..+..  ..+...+.+..+..++.+||+++.+
T Consensus        42 ~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~~~~   84 (141)
T cd01857          42 RKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALKENA   84 (141)
T ss_pred             CCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecCCCc
Confidence            579999999999964332  2233455556678899999999875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.18  E-value=0.00083  Score=50.11  Aligned_cols=52  Identities=23%  Similarity=0.075  Sum_probs=40.3

Q ss_pred             EEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          91 RLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        91 ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +||.||.||...-..+.+....-+++.  +.+|+++|+++|.|+++++..+...
T Consensus       146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            799999999865444556666666665  4789999999999999997776543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.11  E-value=0.00024  Score=61.79  Aligned_cols=63  Identities=13%  Similarity=0.171  Sum_probs=43.7

Q ss_pred             cccch---hhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          61 CTVLN---ECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        61 ~dit~---~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      .|+++   +.+|..+.|+..        .++|++||+||+|+..          .|+...+++|+|+||+++.+|..-|.
T Consensus       100 vD~~~g~~~qt~e~i~~l~~--------~~vpiIVv~NK~Dl~~----------~~~~~~~~~f~e~sak~~~~v~~~~~  161 (590)
T TIGR00491       100 VDINEGFKPQTQEALNILRM--------YKTPFVVAANKIDRIP----------GWRSHEGRPFMESFSKQEIQVQQNLD  161 (590)
T ss_pred             EECCcCCCHhHHHHHHHHHH--------cCCCEEEEEECCCccc----------hhhhccCchHHHHHHhhhHHHHHHHH
Confidence            45554   566666554321        2679999999999853          35677889999999999987765444


Q ss_pred             HHHH
Q psy1416         138 AITN  141 (177)
Q Consensus       138 ~~~~  141 (177)
                      ....
T Consensus       162 ~~~~  165 (590)
T TIGR00491       162 TKVY  165 (590)
T ss_pred             HHHH
Confidence            3333

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG3905|consensus

Probab=97.08  E-value=0.0016  Score=52.34  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=48.3

Q ss_pred             CCcEEEEeeCCCC----cCCCccC-------HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDD----PQKKVVL-------TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl----~~~~~v~-------~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .+|+++|.+|+|+    +.+....       ....+.||-++|+..|.||+|...|++-++.+|+.+++..
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~  292 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF  292 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence            7899999999998    2221111       2356778899999999999999999999999999988654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.03  E-value=0.002  Score=59.31  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      .+++.+||++|+||+++...+...
T Consensus       648 v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        648 VAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHh
Confidence            578999999999999998766543

>cd04109 Rab28 Rab28 subfamily

Probab=97.01  E-value=0.00086  Score=50.83  Aligned_cols=30  Identities=23%  Similarity=0.244  Sum_probs=26.7

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      ++++|+|+|||+|.||+++|..|++.+...
T Consensus       139 ~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         139 NGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            367899999999999999999999988753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=96.96  E-value=0.00091  Score=51.26  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=25.1

Q ss_pred             CC-cEEEeccCCCCC-HHHHHHHHHHHHHHH
Q psy1416           2 GI-QLFETSAKDNIN-VEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~-~f~EtSAk~~~n-V~~~F~~l~~~i~~~   30 (177)
                      |+ +|||||||++.| |+++|..+++..+.+
T Consensus       148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         148 GAVSYVECSSRSSERSVRDVFHVATVASLGR  178 (222)
T ss_pred             CCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence            54 799999999996 999999999977654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.96  E-value=0.0028  Score=53.71  Aligned_cols=55  Identities=20%  Similarity=0.243  Sum_probs=39.7

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-------cC--CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-------MG--IQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-------~~--~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .++|+++..||+|..+.   .+.....-..+       |+  ..|+.+||++|+||++|+..++-..
T Consensus       106 a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         106 AGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             CCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence            37999999999998743   23333332233       33  4699999999999999998877543

>KOG1489|consensus

Probab=96.95  E-value=0.0018  Score=51.82  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAIT  140 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~~~  140 (177)
                      .+-|.++|+||+|+.+..   ..-..++++...-+ .+.+||+++++++++...|-
T Consensus       311 ~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr  363 (366)
T KOG1489|consen  311 ADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLR  363 (366)
T ss_pred             ccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHh
Confidence            467899999999995211   12235677776555 89999999999998876553

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.88  E-value=0.0025  Score=50.67  Aligned_cols=54  Identities=15%  Similarity=0.067  Sum_probs=38.5

Q ss_pred             CcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      ..-++|.||+||........+......+..  .++.+.+||++|+|++++...+..
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999643222233444444443  478999999999999999988865

>cd04165 GTPBP1_like GTPBP1-like

Probab=96.86  E-value=0.003  Score=48.42  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=35.0

Q ss_pred             CCcEEEEeeCCCCcCCCccC--HHHHHHHHHH--------------------------cCCcEEEecCCCCCCHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQ--------------------------MGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~--------------------------~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++|.||+|+.++..+.  .++...+...                          ...++|.+||.+|.|++++...
T Consensus       138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~  217 (224)
T cd04165         138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF  217 (224)
T ss_pred             CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence            57899999999985432111  1122222210                          1248999999999999988766


Q ss_pred             HH
Q psy1416         139 IT  140 (177)
Q Consensus       139 ~~  140 (177)
                      |.
T Consensus       218 L~  219 (224)
T cd04165         218 LN  219 (224)
T ss_pred             HH
Confidence            53

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=96.84  E-value=0.00088  Score=56.09  Aligned_cols=50  Identities=22%  Similarity=0.194  Sum_probs=35.8

Q ss_pred             CcEEEEeeCCCCcCCCc----cCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKV----VLTEDAQRFANQMG-----IQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f~  137 (177)
                      .|++||+||+|+.....    ...++...+....+     .+++.+||++|.||++++.
T Consensus       140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            46999999999964211    12345555665555     4699999999999998664

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=96.83  E-value=0.0034  Score=52.85  Aligned_cols=57  Identities=26%  Similarity=0.283  Sum_probs=43.0

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHH-HHHHHcCC---cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQ-RFANQMGI---QLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~-~~a~~~~~---~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      .+.-||-|.||+||+...   .+..+ +...-.|+   .-+.+|||+|.||++++..++..+..
T Consensus       127 ~~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         127 NNLEIIPVLNKIDLPAAD---PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             cCcEEEEeeecccCCCCC---HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            477899999999997542   33333 34444564   47899999999999999999887754

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.82  E-value=0.0039  Score=49.25  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +.|+++|.||+||.+...+  ..-.++.+..+..++.+||+++.+++++...+.+.+.+.
T Consensus        48 ~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        48 NKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            4689999999999542111  111112233456789999999999999988887766543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09866 hypothetical protein; Provisional

Probab=96.77  E-value=0.0055  Score=53.65  Aligned_cols=54  Identities=15%  Similarity=0.103  Sum_probs=39.3

Q ss_pred             CcEEEEeeCCCCcCCCccCHHHHHHHHHHc----C---CcEEEecCCCCCCHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQM----G---IQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~----~---~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      .|+++|.||+|+.++..-..+....+....    +   ...|.+||+.|.|++++...+..
T Consensus       290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            699999999998643322244555553322    2   35899999999999999998887

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=96.75  E-value=0.0035  Score=50.63  Aligned_cols=61  Identities=25%  Similarity=0.258  Sum_probs=41.7

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc--EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ--LFETSAKDNINVEEMFMAITNLVLRSK  147 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~--~~e~Sak~~~~v~~~f~~~~~~~~~~~  147 (177)
                      .+-|.+||.||+|+...+.-.......+++..+..  ++ +||.++.+++++...+.+.+.+..
T Consensus       274 ~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         274 AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL-ISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee-eehhcccCHHHHHHHHHHHHHHhh
Confidence            45689999999996543322222333344444433  33 999999999999999888877664

>cd04148 RGK RGK subfamily

Probab=96.75  E-value=0.0019  Score=49.31  Aligned_cols=28  Identities=29%  Similarity=0.309  Sum_probs=25.6

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLR   29 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~   29 (177)
                      +++|+||||++|.||+++|..|++.+..
T Consensus       137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         137 DCKFIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             CCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999998864

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=96.70  E-value=0.0019  Score=48.74  Aligned_cols=48  Identities=27%  Similarity=0.225  Sum_probs=32.6

Q ss_pred             CcEEEEeeCCCCcCCCcc----CHHHHHHHHHHcCC---cEEEecCCCCCCHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVV----LTEDAQRFANQMGI---QLFETSAKDNINVEEM  135 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v----~~~~~~~~a~~~~~---~~~e~Sak~~~~v~~~  135 (177)
                      .++|+|.||+|+.....-    ...+...+...++.   +++.+||++|.||++.
T Consensus       131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            357889999999642210    12344555566664   4899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2262 HflX GTPases [General function prediction only]

Probab=96.67  E-value=0.0053  Score=50.65  Aligned_cols=56  Identities=18%  Similarity=-0.050  Sum_probs=40.0

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .++|+|+|-||+|+.....     ....+....-..+.+||++|.|++.+...|...+...
T Consensus       303 ~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         303 DEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            3589999999999754322     1112222211589999999999999999988887644

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=96.66  E-value=0.003  Score=55.15  Aligned_cols=58  Identities=21%  Similarity=0.217  Sum_probs=40.9

Q ss_pred             CCcEEEEeeCCCCcCCCcc-CHHHHHHHHH-------HcCCcEEEecCCCCC----------CHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVV-LTEDAQRFAN-------QMGIQLFETSAKDNI----------NVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v-~~~~~~~~a~-------~~~~~~~e~Sak~~~----------~v~~~f~~~~~~~~  144 (177)
                      ++|+++|+||+|+.+.+.. ..++...+..       +..++++.+||++|.          +++.+|..++..+.
T Consensus       116 ~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       116 GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            6889999999999754321 1233333332       235689999999996          79999988887664

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.66  E-value=0.0031  Score=51.74  Aligned_cols=51  Identities=16%  Similarity=0.141  Sum_probs=36.2

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEMFMAIT  140 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~f~~~~  140 (177)
                      +++.+||.||+||.+..   .+....+.. ..+++.+.+||+++.+++++...+.
T Consensus       142 ~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        142 GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence            67789999999997531   111222222 3467889999999999998877764

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=96.62  E-value=0.0075  Score=42.00  Aligned_cols=51  Identities=29%  Similarity=0.301  Sum_probs=42.1

Q ss_pred             cEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      |+|-|.+|.||....  ..+..+.|..+.|. +.|++|+.+..+|++++..+..
T Consensus        92 ~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          92 KVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             ceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            588899999998543  34667788888886 4999999999999999988864

>PRK04004 translation initiation factor IF-2; Validated

Probab=96.59  E-value=0.0014  Score=57.10  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=41.8

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ++|+++|+||+|+..          .|+...+..|+++|++++.++.+.|......+...
T Consensus       123 ~vpiIvviNK~D~~~----------~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~  172 (586)
T PRK04004        123 KTPFVVAANKIDRIP----------GWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQ  172 (586)
T ss_pred             CCCEEEEEECcCCch----------hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            689999999999851          35556688999999999999999999988777654

>KOG0462|consensus

Probab=96.58  E-value=0.0038  Score=53.27  Aligned_cols=56  Identities=29%  Similarity=0.220  Sum_probs=41.8

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHH----HHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFA----NQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a----~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+..+|.|.||+||...+   .+......    .....+.+.+|||+|.||++++..+++.+.
T Consensus       176 ~~L~iIpVlNKIDlp~ad---pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  176 AGLAIIPVLNKIDLPSAD---PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             cCCeEEEeeeccCCCCCC---HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence            367899999999998654   23333222    223457899999999999999998888775

>KOG0070|consensus

Probab=96.58  E-value=0.0031  Score=46.46  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=42.9

Q ss_pred             CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          85 LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        85 ~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ..++|+++.+||-|+.+.  .+..+......-.     ...+..|+|.+|+|+.+.+..+...+..
T Consensus       116 l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  116 LRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            358999999999999753  3444443333222     2346789999999999999999887753

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=96.58  E-value=0.0038  Score=52.85  Aligned_cols=55  Identities=16%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             cEEEEeeCCCCcCCCcc--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVV--LTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ++|||.||+|+.+...+  ..++...+...   .+.+++.+||++|.||+.+...|...+
T Consensus       173 ~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        173 HIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             cEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            58999999999742211  12233333322   257899999999999998888877544

>PRK13768 GTPase; Provisional

Probab=96.53  E-value=0.0061  Score=47.58  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=39.0

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHH----------------------------HHHHcC--CcEEEecCCCCCCHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQR----------------------------FANQMG--IQLFETSAKDNINVEEMF  136 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~----------------------------~a~~~~--~~~~e~Sak~~~~v~~~f  136 (177)
                      +.|+++|.||+|+......  ++...                            ..+..+  .+++++||+++.+++++.
T Consensus       162 ~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~  239 (253)
T PRK13768        162 GLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY  239 (253)
T ss_pred             CCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH
Confidence            6899999999998654321  11111                            112233  578999999999999999


Q ss_pred             HHHHHHH
Q psy1416         137 MAITNLV  143 (177)
Q Consensus       137 ~~~~~~~  143 (177)
                      ..+.+.+
T Consensus       240 ~~I~~~l  246 (253)
T PRK13768        240 AAIQEVF  246 (253)
T ss_pred             HHHHHHc
Confidence            8887665

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.49  E-value=0.0086  Score=47.60  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=40.0

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +.|+++|.||+||.+...  .+....+.++.+..++.+||+++.+++++...+...+.+.
T Consensus        51 ~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         51 NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            468999999999953211  1111222234466789999999999999888877766543

>KOG0076|consensus

Probab=96.48  E-value=0.0018  Score=47.42  Aligned_cols=61  Identities=13%  Similarity=0.040  Sum_probs=44.2

Q ss_pred             CCCcEEEEeeCCCCcCCCccC-HHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVL-TEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~-~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .++|+++.+||-|+.+.-.+. .......++..   ..+|..+||.+|+||++....+++.+.+.
T Consensus       125 eg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  125 EGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            579999999999998643221 11222223333   36799999999999999999999887654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=96.48  E-value=0.0018  Score=49.26  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=30.0

Q ss_pred             CcEEEEeeCCCCcCC--CccC----HHHHHHHHHHcC-----CcEEEecCCCCCCHH
Q psy1416          88 SGLRLVGNKNDDPQK--KVVL----TEDAQRFANQMG-----IQLFETSAKDNINVE  133 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~--~~v~----~~~~~~~a~~~~-----~~~~e~Sak~~~~v~  133 (177)
                      .|+++|.||+|+...  ..-.    .++...+....+     .+++.+||++|.||+
T Consensus       138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         138 KQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             CeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            578999999999731  1001    112222334443     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.48  E-value=0.0029  Score=50.64  Aligned_cols=57  Identities=21%  Similarity=0.158  Sum_probs=38.0

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHH-----H-HHHHH---HcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTED-----A-QRFAN---QMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~-----~-~~~a~---~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ..|.++|.||+|+..........     . ..+..   .+..+++.+||+++.||++++..+.+..
T Consensus       172 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       172 EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            56789999999997432111000     0 11111   1334699999999999999999998763

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=96.45  E-value=0.0037  Score=47.21  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=25.6

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLR   29 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~   29 (177)
                      ++.|+||||++|.||+++|..||+.++.
T Consensus       142 ~~~~~e~Sa~~~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        142 NLQYYDISAKSNYNFEKPFLWLARRLTN  169 (215)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            5779999999999999999999998864

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.38  E-value=0.0096  Score=47.47  Aligned_cols=58  Identities=19%  Similarity=0.106  Sum_probs=44.3

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .++..+||.||+||.+......++.......+|++.+.+||+++.+++++...+...+
T Consensus       109 ~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         109 GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCe
Confidence            3677788899999986543222345556677899999999999999999988877553

>KOG4423|consensus

Probab=96.33  E-value=0.0047  Score=45.82  Aligned_cols=28  Identities=32%  Similarity=0.329  Sum_probs=25.9

Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           4 QLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         4 ~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      .|+|||||++.||+|+-+.|+++|+.+.
T Consensus       170 gwtets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  170 GWTETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             ceeeeccccccChhHHHHHHHHHHHhhc
Confidence            5999999999999999999999998764

>cd04147 Ras_dva Ras-dva subfamily

Probab=96.30  E-value=0.0055  Score=45.69  Aligned_cols=27  Identities=41%  Similarity=0.404  Sum_probs=24.7

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      +++|+++||++|.||+++|..|++.+.
T Consensus       137 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         137 NCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             CCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            467999999999999999999999775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>COG1159 Era GTPase [General function prediction only]

Probab=96.24  E-value=0.0085  Score=47.53  Aligned_cols=59  Identities=22%  Similarity=0.190  Sum_probs=40.4

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +.|++|+.||+|......+-......+..... ...+.+||+.|.|++.+...+...+.+
T Consensus       114 ~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         114 KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            57999999999987544311222222222222 368999999999999998888776643

>PRK12736 elongation factor Tu; Reviewed

Probab=96.20  E-value=0.0095  Score=49.50  Aligned_cols=44  Identities=18%  Similarity=0.175  Sum_probs=29.4

Q ss_pred             CCc-EEEEeeCCCCcCCCccC---HHHHHHHHHHcC-----CcEEEecCCCCC
Q psy1416          87 PSG-LRLVGNKNDDPQKKVVL---TEDAQRFANQMG-----IQLFETSAKDNI  130 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-----~~~~e~Sak~~~  130 (177)
                      ++| +|+|.||+|+.+...+.   .++...+....+     ++++.+||++|.
T Consensus       127 g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        127 GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence            566 68899999996432211   234455555554     579999999984

>KOG0072|consensus

Probab=96.19  E-value=0.004  Score=44.38  Aligned_cols=58  Identities=14%  Similarity=0.072  Sum_probs=41.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ....++|++||.|....  .+..|+..     ..+..-...+++||.+|+|+++++..+.+.+..
T Consensus       118 q~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  118 QHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             cCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            35789999999998642  22233222     122223679999999999999999999987754

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.16  E-value=0.017  Score=48.25  Aligned_cols=58  Identities=19%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .-++++|.||-|+..+...+.++.+...+..     .++.+.+||++|.++..+|..+.....
T Consensus       289 g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         289 GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            4689999999998765445555555444432     367899999999999999998876544

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=96.05  E-value=0.014  Score=48.96  Aligned_cols=56  Identities=21%  Similarity=0.095  Sum_probs=40.2

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .+.|+++|.||+||........     .....+.+++.+||++|.|++.+-..+...+...
T Consensus       323 ~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         323 KKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            4578999999999986533111     1112344689999999999999888777666544

>KOG0075|consensus

Probab=96.02  E-value=0.0052  Score=43.93  Aligned_cols=52  Identities=23%  Similarity=0.310  Sum_probs=39.0

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--------CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--------IQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--------~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      ..+|+++.|||.|+.+.  .+..   .+..+.|        +-.|.+|+|...||+.+...+.+.
T Consensus       121 ~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h  180 (186)
T KOG0075|consen  121 TGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH  180 (186)
T ss_pred             cCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence            57999999999999742  2222   3444554        357899999999999988887754

>cd04143 Rhes_like Rhes_like subfamily

Probab=96.01  E-value=0.0082  Score=46.69  Aligned_cols=26  Identities=46%  Similarity=0.635  Sum_probs=23.4

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      ++.|+|||||+|.||+++|..|++..
T Consensus       145 ~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         145 NCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            46799999999999999999999854

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>COG2229 Predicted GTPase [General function prediction only]

Probab=95.96  E-value=0.029  Score=41.43  Aligned_cols=53  Identities=11%  Similarity=0.028  Sum_probs=42.4

Q ss_pred             CcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +|+++..||.||.+.+  +.++..++.+..  ..+.++++|..+.++.+....+...
T Consensus       122 ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         122 IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            8999999999998654  566666655554  7899999999999998887776644

>PLN00043 elongation factor 1-alpha; Provisional

Probab=95.96  E-value=0.01  Score=50.24  Aligned_cols=48  Identities=19%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             CC-cEEEEeeCCCCcCCC--c----cCHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q psy1416          87 PS-GLRLVGNKNDDPQKK--V----VLTEDAQRFANQMG-----IQLFETSAKDNINVEE  134 (177)
Q Consensus        87 ~~-~~ilvgnK~Dl~~~~--~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~  134 (177)
                      .+ ++|++.||+|+.+..  .    -..++...+.++.|     ++|+.+||++|.||.+
T Consensus       144 gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        144 GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            55 478899999986210  0    01356667777766     5799999999999864

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=95.78  E-value=0.012  Score=51.48  Aligned_cols=57  Identities=25%  Similarity=0.299  Sum_probs=47.6

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|++++-|++|...++-+.. +...+.+..|++.+.+||++|.|++++...+.+...
T Consensus       108 g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         108 GIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             CCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence            678999999999987665543 556788999999999999999999999888876443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=95.76  E-value=0.017  Score=47.92  Aligned_cols=44  Identities=14%  Similarity=0.128  Sum_probs=30.2

Q ss_pred             CCcE-EEEeeCCCCcCCCccC---HHHHHHHHHHcC-----CcEEEecCCCCC
Q psy1416          87 PSGL-RLVGNKNDDPQKKVVL---TEDAQRFANQMG-----IQLFETSAKDNI  130 (177)
Q Consensus        87 ~~~~-ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-----~~~~e~Sak~~~  130 (177)
                      ++|. |+|.||+|+.+.....   .++...+.+.++     ++++.+||++|.
T Consensus       127 gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            4564 5789999997532211   235666666665     689999999985

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.70  E-value=0.022  Score=46.33  Aligned_cols=55  Identities=18%  Similarity=0.163  Sum_probs=36.8

Q ss_pred             EEEEeeCCCCcCCCcc--CHHHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          90 LRLVGNKNDDPQKKVV--LTEDAQRFANQ-------MGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        90 ~ilvgnK~Dl~~~~~v--~~~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      -++|.||.|+......  ...+.......       +..+++.+||+++.||++++..+.+.+.
T Consensus       197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4899999998653211  11122211111       2357999999999999999999988643

>cd01884 EF_Tu EF-Tu subfamily

Probab=95.45  E-value=0.043  Score=41.12  Aligned_cols=47  Identities=13%  Similarity=0.175  Sum_probs=30.9

Q ss_pred             CCc-EEEEeeCCCCcCCCcc---CHHHHHHHHHHcC-----CcEEEecCCCCCCHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKVV---LTEDAQRFANQMG-----IQLFETSAKDNINVE  133 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v---~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~  133 (177)
                      ++| +|+|.||+|+..+...   ..++...+....+     ++++.+||++|.|+.
T Consensus       117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            455 7899999998532211   1224444544443     579999999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=95.17  E-value=0.063  Score=40.08  Aligned_cols=63  Identities=13%  Similarity=0.110  Sum_probs=40.9

Q ss_pred             CCcEEEEeeCCCCcCCCc----c---CHH----HHHHHH----HHcC---CcEEEecCC--CCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKV----V---LTE----DAQRFA----NQMG---IQLFETSAK--DNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~----v---~~~----~~~~~a----~~~~---~~~~e~Sak--~~~~v~~~f~~~~~~~~~~  146 (177)
                      ..|+++|+||+|+.....    .   ..+    +..+.+    ...+   -.+|-+|+.  .++++..+...+...+.+.
T Consensus       107 ~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         107 GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            468999999999842100    0   111    111111    1222   368999998  6799999999999998876


Q ss_pred             HHH
Q psy1416         147 KKE  149 (177)
Q Consensus       147 ~~~  149 (177)
                      ++-
T Consensus       187 ~~~  189 (197)
T cd04104         187 KRH  189 (197)
T ss_pred             HHH
Confidence            543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG1145|consensus

Probab=95.13  E-value=0.1  Score=45.00  Aligned_cols=54  Identities=26%  Similarity=0.207  Sum_probs=38.9

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-------cC--CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-------MG--IQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-------~~--~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      -++|+|+..||+|-+..   .++....-...       +|  ...+.+||++|.|++.+-..++-.
T Consensus       252 A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  252 ANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLL  314 (683)
T ss_pred             cCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence            47999999999997643   34444433333       33  468999999999999887776643

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=95.09  E-value=0.042  Score=46.77  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             CCcEEEEeeCCCCcC----CCcc-------CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQ----KKVV-------LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK  147 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~----~~~v-------~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~  147 (177)
                      .+|++||.+|+|.-.    +...       -..-.+.+|-.+|+.+|.||++...|++.++.+|...++...
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~  267 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP  267 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence            689999999999631    1111       123456778889999999999999999999999888887643

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=95.02  E-value=0.082  Score=42.68  Aligned_cols=50  Identities=30%  Similarity=0.288  Sum_probs=40.5

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      -+|.+.|.||+|+..     .++...+.+..  .++.+||+.+.|++++-..+.+.+
T Consensus       239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         239 YKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             eeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence            478999999999964     35555555555  789999999999999998888765

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=95.00  E-value=0.02  Score=48.73  Aligned_cols=48  Identities=29%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             CcEEEEeeCCCCcCCCccCHH----HHHHHHHHc----CCcEEEecCCCCCCHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLTE----DAQRFANQM----GIQLFETSAKDNINVEEM  135 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~~----~~~~~a~~~----~~~~~e~Sak~~~~v~~~  135 (177)
                      .|++||.||+|+...+.-..+    +...+....    ..+++.+||++|.||+++
T Consensus       161 ~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        161 KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            368999999999743221112    222333333    367999999999999865

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.91  E-value=0.028  Score=45.31  Aligned_cols=57  Identities=19%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             cEEEEeeCCCCcCCCc--cCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKV--VLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      -+|+|-||+||..+..  -..++.++|.+-   -+++.+-+||.-+.||+.++..+.+.|..
T Consensus       142 ~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         142 NIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             eEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            3899999999965321  124455555543   25789999999999999999998887754

>PRK12735 elongation factor Tu; Reviewed

Probab=94.75  E-value=0.05  Score=45.24  Aligned_cols=45  Identities=11%  Similarity=0.111  Sum_probs=29.4

Q ss_pred             CCcEE-EEeeCCCCcCCCcc---CHHHHHHHHHHcC-----CcEEEecCCCCCC
Q psy1416          87 PSGLR-LVGNKNDDPQKKVV---LTEDAQRFANQMG-----IQLFETSAKDNIN  131 (177)
Q Consensus        87 ~~~~i-lvgnK~Dl~~~~~v---~~~~~~~~a~~~~-----~~~~e~Sak~~~~  131 (177)
                      ++|.+ +|.||+|+.++...   ...+...+...++     ++|+.+||++|.|
T Consensus       127 gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence            56754 68999999642211   1235555666553     6799999999953

>COG0218 Predicted GTPase [General function prediction only]

Probab=94.70  E-value=0.08  Score=39.77  Aligned_cols=57  Identities=14%  Similarity=0.094  Sum_probs=37.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC----Cc--EEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG----IQ--LFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~----~~--~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ++|+++|.||+|-....... ......++..+    ..  ++..|+.++.|++++-..|...+.
T Consensus       135 ~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         135 GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            78999999999976432211 11222333322    22  778899999999998888776654

>KOG1707|consensus

Probab=94.45  E-value=0.068  Score=46.13  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMA  138 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~  138 (177)
                      +|.+++.||.-+. -++    .......+|+++|+.|+||....+...-.-.+++.+++++ -...|.++.-. .++|..
T Consensus       503 YDsS~p~sf~~~a~v~~----~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  503 YDSSNPRSFEYLAEVYN----KYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             cccCCchHHHHHHHHHH----HhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence            7778899998775 222    1222258999999999999764432222227899999975 45556654222 789999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      |+..+.
T Consensus       578 L~~~A~  583 (625)
T KOG1707|consen  578 LATMAQ  583 (625)
T ss_pred             HHHhhh
Confidence            997764

>KOG0705|consensus

Probab=94.42  E-value=0.069  Score=45.95  Aligned_cols=87  Identities=22%  Similarity=0.327  Sum_probs=61.4

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCc--CCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDP--QKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~--~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f  136 (177)
                      ..+-+..||..+. ....+. .+.....+|+++||.+--..  ..|.+...++..++..+ .+.||+++|-+|.+|+..|
T Consensus       103 f~~~d~~s~q~v~~l~~~l~-~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMS-SYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEeccccCHHHHHHHHhhcc-cccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            3345777887775 222221 11223578999999986543  35667777777766655 4789999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         137 MAITNLVLRSKK  148 (177)
Q Consensus       137 ~~~~~~~~~~~~  148 (177)
                      ..++..++....
T Consensus       182 ~~~~~k~i~~~~  193 (749)
T KOG0705|consen  182 QEVAQKIVQLRK  193 (749)
T ss_pred             HHHHHHHHHHHh
Confidence            999988876643

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=94.39  E-value=0.044  Score=45.76  Aligned_cols=47  Identities=28%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             cEEEEeeCCCCcCCCccC----HHHHHHHHHHcC---CcEEEecCCCCCCHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVVL----TEDAQRFANQMG---IQLFETSAKDNINVEEM  135 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v~----~~~~~~~a~~~~---~~~~e~Sak~~~~v~~~  135 (177)
                      ++++|.||+|+.....-.    .++...+.+..+   ++++.+||++|.|++++
T Consensus       135 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       135 HVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             cEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            589999999996422111    122333344444   46999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01899 Ygr210 Ygr210 subfamily

Probab=94.38  E-value=0.041  Score=44.49  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH-HHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM-AITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~-~~~~~~~  144 (177)
                      ..|+|+|.||.|+.....    ....+.... ...++.+||+.+.+++++.. .+++.+.
T Consensus       214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            579999999999853221    111222222 45799999999999999887 4766654

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG1532|consensus

Probab=94.36  E-value=0.23  Score=39.39  Aligned_cols=60  Identities=17%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             CCCcEEEEeeCCCCcCCCcc-----CHH---HHHHH---------HHH---------cCCcEEEecCCCCCCHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVV-----LTE---DAQRF---------ANQ---------MGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v-----~~~---~~~~~---------a~~---------~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      ..+|+|+|-||+|+.+..-.     ..+   ++..-         .+.         .++...-+||.+|.|.+++|..+
T Consensus       180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av  259 (366)
T KOG1532|consen  180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV  259 (366)
T ss_pred             ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH
Confidence            37899999999999653210     111   11110         000         12568899999999999999888


Q ss_pred             HHHHHH
Q psy1416         140 TNLVLR  145 (177)
Q Consensus       140 ~~~~~~  145 (177)
                      -..+-+
T Consensus       260 ~~~vdE  265 (366)
T KOG1532|consen  260 DESVDE  265 (366)
T ss_pred             HHHHHH
Confidence            766544

>PRK10218 GTP-binding protein; Provisional

Probab=94.28  E-value=0.11  Score=45.60  Aligned_cols=58  Identities=21%  Similarity=0.225  Sum_probs=37.6

Q ss_pred             CCcEEEEeeCCCCcCCCcc-CHHHHHHHHH-------HcCCcEEEecCCCCC----------CHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVV-LTEDAQRFAN-------QMGIQLFETSAKDNI----------NVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v-~~~~~~~~a~-------~~~~~~~e~Sak~~~----------~v~~~f~~~~~~~~  144 (177)
                      ++|+++|.||+|+...+.- ..++...+..       ...++++.+||++|.          ++..+|..++..+.
T Consensus       120 gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        120 GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            6789999999999753321 1123333321       134678999999998          47777776665553

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=94.21  E-value=0.036  Score=43.08  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=23.0

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNL   26 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~   26 (177)
                      +|+.+|+||||+|.||+++|..|+..
T Consensus        96 ~g~~v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157        96 IGYQVLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             CCCeEEEEecCCchhHHHHHhhhcCC
Confidence            36789999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1160 Predicted GTPases [General function prediction only]

Probab=94.17  E-value=0.11  Score=43.57  Aligned_cols=53  Identities=25%  Similarity=0.259  Sum_probs=39.6

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|++||.||+|-...    .+...+| -.+| -..+-+||.-|.|+.++...++..+.
T Consensus       112 ~kpviLvvNK~D~~~~----e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         112 KKPVILVVNKIDNLKA----EELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             CCCEEEEEEcccCchh----hhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence            5799999999996421    1222333 3344 46899999999999999999998873

>KOG1490|consensus

Probab=94.04  E-value=0.24  Score=42.33  Aligned_cols=64  Identities=19%  Similarity=0.158  Sum_probs=48.4

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHH---HHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDA---QRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ  150 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~---~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~~~~  150 (177)
                      +-|.|||.||+|+.....+..+..   .......+++++++|..+-+||-++=...+..++..+.+.
T Consensus       281 NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~  347 (620)
T KOG1490|consen  281 NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQ  347 (620)
T ss_pred             CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHH
Confidence            568999999999976555555432   2334445589999999999999999888888887765443

>cd04167 Snu114p Snu114p subfamily

Probab=93.52  E-value=0.072  Score=40.21  Aligned_cols=14  Identities=36%  Similarity=0.114  Sum_probs=12.5

Q ss_pred             CCcEEEEeeCCCCc
Q psy1416          87 PSGLRLVGNKNDDP  100 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~  100 (177)
                      +.|+++|+||+|+.
T Consensus       123 ~~p~iiviNK~D~~  136 (213)
T cd04167         123 GLPIVLVINKIDRL  136 (213)
T ss_pred             CCCEEEEEECcccC
Confidence            58999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1423|consensus

Probab=93.15  E-value=0.17  Score=40.66  Aligned_cols=25  Identities=12%  Similarity=0.118  Sum_probs=21.7

Q ss_pred             cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         120 QLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       120 ~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+|-+||++|+||+++-.++...+.
T Consensus       247 ~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  247 RVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             eEEEEecccccCHHHHHHHHHhcCC
Confidence            3899999999999999998887654

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=93.12  E-value=0.12  Score=42.35  Aligned_cols=46  Identities=26%  Similarity=0.174  Sum_probs=35.0

Q ss_pred             cEEEEeeCCCCcCCCccCH----HHHHHHHHHcCC---cEEEecCCCCCCHHH
Q psy1416          89 GLRLVGNKNDDPQKKVVLT----EDAQRFANQMGI---QLFETSAKDNINVEE  134 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~~---~~~e~Sak~~~~v~~  134 (177)
                      .+||..||+||.+..+-..    .+-..||..++.   .|+.+||+.|+||-.
T Consensus       141 hvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         141 HVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             EEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            4789999999987543222    345668888874   599999999999853

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=92.91  E-value=0.1  Score=46.02  Aligned_cols=47  Identities=26%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             CcEEEEeeCCCCcCCCccCH----HHHHHHHHHcC---CcEEEecCCCCCCHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLT----EDAQRFANQMG---IQLFETSAKDNINVEE  134 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~---~~~~e~Sak~~~~v~~  134 (177)
                      .+++||.||+|+.+...-..    .+...+....+   .+++.+||++|.|+++
T Consensus       158 ~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        158 RHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             CeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            46889999999964211111    22333444555   3589999999999974

>KOG4252|consensus

Probab=92.78  E-value=0.071  Score=39.49  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=28.9

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ   34 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~   34 (177)
                      ++.||.||+|+..||..+|..|++++.+++..+
T Consensus       155 ~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  155 HKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQS  187 (246)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999998876543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=92.70  E-value=0.14  Score=38.41  Aligned_cols=42  Identities=7%  Similarity=-0.212  Sum_probs=26.5

Q ss_pred             cccchh-hhhcccc-hhhhhh-hhhccCCCCcEEEEeeCCCCcCC
Q psy1416          61 CTVLNE-CAWLGCG-WMTICP-IIYCWLFPSGLRLVGNKNDDPQK  102 (177)
Q Consensus        61 ~dit~~-~Sf~~~~-w~~~~~-~~~~~~~~~~~ilvgnK~Dl~~~  102 (177)
                      .|.++. .++..+. |+..+. ......+.+|++||+||+||...
T Consensus        80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            566665 5666664 654432 11112257999999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK09602 translation-associated GTPase; Reviewed

Probab=92.32  E-value=0.18  Score=42.09  Aligned_cols=45  Identities=20%  Similarity=0.305  Sum_probs=31.3

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      ..|+++|.||.|+....    +....+.+..+..++.+||+.+.+++++
T Consensus       217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~  261 (396)
T PRK09602        217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRA  261 (396)
T ss_pred             CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHH
Confidence            57999999999975322    1122222223456899999999999883

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=92.23  E-value=0.26  Score=39.41  Aligned_cols=55  Identities=22%  Similarity=0.142  Sum_probs=34.9

Q ss_pred             EEEEeeCCCCcCCCcc--CHHHHHHHH------HHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          90 LRLVGNKNDDPQKKVV--LTEDAQRFA------NQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        90 ~ilvgnK~Dl~~~~~v--~~~~~~~~a------~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      =++|.||.|...-...  ...-+..+.      ..|..+.+.|||.+|+||++++..+....-
T Consensus       192 Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         192 DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            3789999996532100  001111111      123467999999999999999988876543

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=91.52  E-value=0.21  Score=43.80  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=24.2

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +|+++++|||++|.||+++|..+++..
T Consensus       128 lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       128 LGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0071|consensus

Probab=91.45  E-value=0.51  Score=33.69  Aligned_cols=55  Identities=15%  Similarity=0.066  Sum_probs=40.5

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      .++|+++.+||-||.+.+  ++.+...+.+--     ..-...++|.+|.++.|-|..+...
T Consensus       117 ~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn  176 (180)
T KOG0071|consen  117 RDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNN  176 (180)
T ss_pred             hcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhh
Confidence            478999999999998654  455555443322     2335689999999999999888754

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=91.25  E-value=0.19  Score=39.45  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             cEEEEeeCCCCcCCCccCHHHHH---HHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVVLTEDAQ---RFANQ----MGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v~~~~~~---~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .=++|.||.|+..... +..+..   .+...    |..+.+.|||.++.||++++..+.+..
T Consensus       169 aDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  169 ADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             -SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3478999999653211 111212   22111    235799999999999999998887643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=91.07  E-value=0.12  Score=39.97  Aligned_cols=56  Identities=23%  Similarity=0.195  Sum_probs=31.4

Q ss_pred             CCcEEEEeeCCCCcCCCc---c----C------------HHHHHHHHHH---cC-C-cEEEecCCCCCCHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKV---V----L------------TEDAQRFANQ---MG-I-QLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~---v----~------------~~~~~~~a~~---~~-~-~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      ++|.|.|.||+||.....   +    .            ..-...+++-   ++ . .|+.+|+++++++++++..+-+.
T Consensus       156 ~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  156 ELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             TSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             CCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            789999999999975210   0    0            0001111111   22 3 69999999999999998777654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>CHL00071 tufA elongation factor Tu

Probab=90.93  E-value=0.23  Score=41.50  Aligned_cols=46  Identities=15%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             CCc-EEEEeeCCCCcCCCccC---HHHHHHHHHHcC-----CcEEEecCCCCCCH
Q psy1416          87 PSG-LRLVGNKNDDPQKKVVL---TEDAQRFANQMG-----IQLFETSAKDNINV  132 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-----~~~~e~Sak~~~~v  132 (177)
                      ++| +|+|.||+|+.+.....   .++...+.+..+     ++++.+||++|.|+
T Consensus       127 g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        127 GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            567 77899999996532211   124445555443     67999999999764

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=89.61  E-value=0.54  Score=39.83  Aligned_cols=48  Identities=17%  Similarity=0.222  Sum_probs=29.8

Q ss_pred             CCc-EEEEeeCCCCcC--CCc--c--CHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q psy1416          87 PSG-LRLVGNKNDDPQ--KKV--V--LTEDAQRFANQMG-----IQLFETSAKDNINVEE  134 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~--~~~--v--~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~  134 (177)
                      .+| +|++.||+|+..  ...  .  ..++...+....+     ++|+.+||.+|.|+.+
T Consensus       144 gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        144 GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            455 679999999531  111  0  1233333334333     5799999999999864

>cd04168 TetM_like Tet(M)-like subfamily

Probab=89.39  E-value=1.6  Score=33.73  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ++.|-.||.++.||..++..+.+.+
T Consensus       210 ~Pv~~gsa~~~~Gv~~ll~~~~~~~  234 (237)
T cd04168         210 FPVYHGSALKGIGIEELLEGITKLF  234 (237)
T ss_pred             EEEEEccccCCcCHHHHHHHHHHhc
Confidence            4677778888888888887776654

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK15494 era GTPase Era; Provisional

Probab=88.88  E-value=0.38  Score=39.23  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=22.3

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      ..+|++||++|.||+++|..|++.+
T Consensus       191 ~~i~~iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        191 SLLFPISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             cEEEEEeccCccCHHHHHHHHHHhC
Confidence            4689999999999999999998854

>KOG0466|consensus

Probab=88.59  E-value=0.42  Score=38.56  Aligned_cols=57  Identities=19%  Similarity=0.199  Sum_probs=41.3

Q ss_pred             cEEEEeeCCCCcCCCcc--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVV--LTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      .++++-||+||-.+.+-  ..++...|.+.   -+++.+.+||.-.+||+-+.+++++.+..
T Consensus       181 hiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  181 HIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             eEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            47899999999643221  12334444443   25789999999999999999999988753

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=88.39  E-value=0.71  Score=35.34  Aligned_cols=25  Identities=28%  Similarity=0.062  Sum_probs=18.0

Q ss_pred             CCcEEEEeeCCCCc-CCCccCHHHHH
Q psy1416          87 PSGLRLVGNKNDDP-QKKVVLTEDAQ  111 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~-~~~~v~~~~~~  111 (177)
                      ++|++||+||+|+. .++.++.+++.
T Consensus       125 ~~p~ilviNKiD~~~~e~~~~~~~~~  150 (222)
T cd01885         125 RVKPVLVINKIDRLILELKLSPEEAY  150 (222)
T ss_pred             CCCEEEEEECCCcchhhhcCCHHHHH
Confidence            57999999999985 34455555443

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=88.08  E-value=1.2  Score=37.14  Aligned_cols=17  Identities=18%  Similarity=0.329  Sum_probs=14.5

Q ss_pred             CcEEEecCCCCCCHHHH
Q psy1416         119 IQLFETSAKDNINVEEM  135 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~  135 (177)
                      .+.|.+|+.||++++-+
T Consensus       314 vPi~~tSsVTg~GldlL  330 (527)
T COG5258         314 VPIFYTSSVTGEGLDLL  330 (527)
T ss_pred             EEEEEEecccCccHHHH
Confidence            58999999999998643

>PRK00049 elongation factor Tu; Reviewed

Probab=87.98  E-value=1.4  Score=36.78  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=27.2

Q ss_pred             CCcEE-EEeeCCCCcCCCccC---HHHHHHHHHHc-----CCcEEEecCCCCCC
Q psy1416          87 PSGLR-LVGNKNDDPQKKVVL---TEDAQRFANQM-----GIQLFETSAKDNIN  131 (177)
Q Consensus        87 ~~~~i-lvgnK~Dl~~~~~v~---~~~~~~~a~~~-----~~~~~e~Sak~~~~  131 (177)
                      ++|++ ++.||+|+.......   ..+...+....     +++++.+||++|.+
T Consensus       127 g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence            56765 689999996421111   12333333333     36799999999863

>cd00066 G-alpha G protein alpha subunit

Probab=87.91  E-value=1  Score=36.39  Aligned_cols=62  Identities=26%  Similarity=0.271  Sum_probs=43.6

Q ss_pred             CCCcEEEEeeCCCCcCCC----------------ccCHHHHHHHHHHc----------CCcEEEecCCCCCCHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKK----------------VVLTEDAQRFANQM----------GIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~~a~~~----------~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .+.|++|++||.|+-.++                .-..+.+..|....          .+..+.|+|.+..+|..+|..+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            478999999999973210                12345555554431          2335679999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         140 TNLVLRSK  147 (177)
Q Consensus       140 ~~~~~~~~  147 (177)
                      ...|+...
T Consensus       307 ~~~i~~~~  314 (317)
T cd00066         307 KDIILQNN  314 (317)
T ss_pred             HHHHHHHH
Confidence            98887653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG1084 Predicted GTPase [General function prediction only]

Probab=87.69  E-value=0.85  Score=36.99  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=39.6

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ..|+++|.||+|+.+...+  +++.......+ ......++..+.+++.+-..+...+.+.
T Consensus       280 ~~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         280 KAPIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             CCCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence            4799999999999754433  33333344444 3477888988989887777766665443

>PLN03126 Elongation factor Tu; Provisional

Probab=87.20  E-value=0.69  Score=39.58  Aligned_cols=46  Identities=15%  Similarity=0.179  Sum_probs=29.8

Q ss_pred             CCc-EEEEeeCCCCcCCCccC---HHHHHHHHHHc-----CCcEEEecCCCCCCH
Q psy1416          87 PSG-LRLVGNKNDDPQKKVVL---TEDAQRFANQM-----GIQLFETSAKDNINV  132 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~-----~~~~~e~Sak~~~~v  132 (177)
                      ++| ++++.||+|+.+.....   .++...+....     +++|+.+||.+|.++
T Consensus       196 gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        196 GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence            567 78899999996532111   12444454443     467999999998654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=87.14  E-value=0.9  Score=33.31  Aligned_cols=15  Identities=40%  Similarity=0.135  Sum_probs=13.1

Q ss_pred             CCcEEEEeeCCCCcC
Q psy1416          87 PSGLRLVGNKNDDPQ  101 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~  101 (177)
                      +.|++||.||+||.+
T Consensus        30 ~kp~IlVlNK~DL~~   44 (172)
T cd04178          30 NKKLVLVLNKIDLVP   44 (172)
T ss_pred             CCCEEEEEehhhcCC
Confidence            578999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=87.11  E-value=0.98  Score=37.96  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=37.8

Q ss_pred             cEEEEeeCCCCcCCCccC--HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVVL--TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      -.++|.+|+|+.+...+.  ..+......-..+++|-+||++|.||+++-.+|....-
T Consensus       105 ~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         105 NGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            359999999987542111  11111111122467899999999999999999988774

>cd01850 CDC_Septin CDC/Septin

Probab=86.95  E-value=0.61  Score=36.91  Aligned_cols=41  Identities=10%  Similarity=0.066  Sum_probs=30.5

Q ss_pred             CCcEEEEeeCCCCcC--CCccCHHHHHHHHHHcCCcEEEecCC
Q psy1416          87 PSGLRLVGNKNDDPQ--KKVVLTEDAQRFANQMGIQLFETSAK  127 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~--~~~v~~~~~~~~a~~~~~~~~e~Sak  127 (177)
                      .+|+++|+||+|+..  +.........+.+..+++.+|.....
T Consensus       143 ~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         143 RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            689999999999854  23334556777788899998876653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PLN03127 Elongation factor Tu; Provisional

Probab=86.80  E-value=1.4  Score=37.45  Aligned_cols=56  Identities=18%  Similarity=0.176  Sum_probs=30.6

Q ss_pred             CCc-EEEEeeCCCCcCCCccCH---HHHHHHHHHc-----CCcEEEecCC---CCCC-------HHHHHHHHHHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKVVLT---EDAQRFANQM-----GIQLFETSAK---DNIN-------VEEMFMAITNL  142 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v~~---~~~~~~a~~~-----~~~~~e~Sak---~~~~-------v~~~f~~~~~~  142 (177)
                      ++| +|+|.||+|+.++.....   .+...+....     .++++.+||.   +|.|       +..++..+...
T Consensus       176 gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        176 GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            577 578999999964322111   1222333322     2578888876   5555       45555544443

>KOG0461|consensus

Probab=86.58  E-value=1.7  Score=35.80  Aligned_cols=56  Identities=23%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             cEEEEeeCCCCc--CCCccCHHH-HHHHHHHc-------CCcEEEecCCCC----CCHHHHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDP--QKKVVLTED-AQRFANQM-------GIQLFETSAKDN----INVEEMFMAITNLVL  144 (177)
Q Consensus        89 ~~ilvgnK~Dl~--~~~~v~~~~-~~~~a~~~-------~~~~~e~Sak~~----~~v~~~f~~~~~~~~  144 (177)
                      ..|+|.||+|+-  ++|.-..++ ++.+++.+       +.+.+++||+.|    ++|.++-+.+-..+.
T Consensus       124 klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if  193 (522)
T KOG0461|consen  124 KLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF  193 (522)
T ss_pred             ceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence            357888999874  344433332 22233222       268999999999    555555444444443

>cd01855 YqeH YqeH

Probab=86.30  E-value=0.93  Score=33.39  Aligned_cols=24  Identities=38%  Similarity=0.435  Sum_probs=21.7

Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           4 QLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         4 ~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      .++.+||++|.||+++|..|.+.+
T Consensus       101 ~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855         101 DVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=86.07  E-value=1.1  Score=37.77  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      .+++++||+++.||+++|..|++.+.
T Consensus       302 ~~i~~iSA~tgeGI~eL~~~L~~~l~  327 (424)
T PRK12297        302 PKVFPISALTGQGLDELLYAVAELLE  327 (424)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999988664

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=85.89  E-value=0.77  Score=38.48  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=23.2

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +++|+++||++|.||+++|..|...+
T Consensus       175 ~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        175 NAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             CCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            46799999999999999999998765

>PRK12740 elongation factor G; Reviewed

Probab=85.08  E-value=2.9  Score=37.27  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ++.+..||++|.||+.++..+...+..
T Consensus       237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs  263 (668)
T PRK12740        237 VPVFCGSALKNKGVQRLLDAVVDYLPS  263 (668)
T ss_pred             EEEEeccccCCccHHHHHHHHHHHCCC
Confidence            457889999999999999888876643

>cd01859 MJ1464 MJ1464

Probab=84.91  E-value=1.3  Score=31.34  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      +.+++.+||+++.|+++++..+.+.+.
T Consensus        70 ~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          70 GIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             CCcEEEEEccccccHHHHHHHHHHHHh
Confidence            457899999999999999998887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00436 era GTP-binding protein Era

Probab=84.28  E-value=0.98  Score=35.42  Aligned_cols=24  Identities=17%  Similarity=0.016  Sum_probs=21.3

Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           4 QLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         4 ~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      .++++||++|.||++++..|.+.+
T Consensus       140 ~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       140 DIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHhC
Confidence            589999999999999998887754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=83.95  E-value=1.4  Score=37.97  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=24.8

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLR   29 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~   29 (177)
                      ++++|++||+++.||+++|..|++.+..
T Consensus       314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        314 GWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5679999999999999999999987644

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=83.86  E-value=4.2  Score=35.29  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=23.1

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ++.|..||+++.||..++..+++.+..
T Consensus       249 ~PV~~GSA~~n~Gv~~LLd~i~~~~P~  275 (526)
T PRK00741        249 TPVFFGSALNNFGVQEFLDAFVEWAPA  275 (526)
T ss_pred             EEEEEeecccCcCHHHHHHHHHHHCCC
Confidence            468889999999999999998887753

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=83.83  E-value=1.2  Score=37.23  Aligned_cols=47  Identities=17%  Similarity=0.102  Sum_probs=32.2

Q ss_pred             cEEEEeeCCCCcCCCccCHHHHH----HHHHHcC-----CcEEEecCCCCCCHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVVLTEDAQ----RFANQMG-----IQLFETSAKDNINVEEM  135 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v~~~~~~----~~a~~~~-----~~~~e~Sak~~~~v~~~  135 (177)
                      .+|++.||+|+.+.++-..++..    .+.+..|     ..|+-+||..|.|+.+.
T Consensus       147 ~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         147 QLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             eEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            47999999999875433333322    2333444     56999999999998654

>KOG4273|consensus

Probab=83.66  E-value=2  Score=33.75  Aligned_cols=80  Identities=20%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------------C---------c-------
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------------K---------V-------  104 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------------~---------~-------  104 (177)
                      ..|++....+..+. |+..-   .-..-+ ..+-+|||+|-...                  |         -       
T Consensus        85 vfdlse~s~l~alqdwl~ht---dinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs  160 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHT---DINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS  160 (418)
T ss_pred             EEeccchhhhHHHHhhcccc---ccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence            37888888888887 98432   111112 24678999985210                  0         0       


Q ss_pred             ----------cCHHHHHHHHHHcCCcEEEecCCC------------CCCHHHHHHHHHHHH
Q psy1416         105 ----------VLTEDAQRFANQMGIQLFETSAKD------------NINVEEMFMAITNLV  143 (177)
Q Consensus       105 ----------v~~~~~~~~a~~~~~~~~e~Sak~------------~~~v~~~f~~~~~~~  143 (177)
                                .-...+.+|+.++|+.|+|.+|..            ..||+.+|..+-..+
T Consensus       161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                      112356789999999999999942            357888887766543

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=83.65  E-value=1.1  Score=37.34  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +++|+++||++|.||+++|..|...+
T Consensus       170 ~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       170 NAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHhC
Confidence            46799999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK13351 elongation factor G; Reviewed

Probab=83.48  E-value=3.3  Score=37.06  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=22.3

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ++.|..||++|.||+.++..++..+..
T Consensus       253 ~PV~~gSA~~~~Gv~~LLd~I~~~lPs  279 (687)
T PRK13351        253 VPVLFGSALKNIGIEPLLDAVVDYLPS  279 (687)
T ss_pred             EEEEecccCcCccHHHHHHHHHHHCCC
Confidence            357778999999999999988887654

>PRK11058 GTPase HflX; Provisional

Probab=83.43  E-value=1.4  Score=37.13  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=21.7

Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           5 LFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         5 f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      ++++||++|.||+++|..|.+.+.
T Consensus       339 ~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        339 RVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHhh
Confidence            489999999999999999998764

>TIGR01393 lepA GTP-binding protein LepA

Probab=83.41  E-value=1  Score=39.63  Aligned_cols=25  Identities=36%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           4 QLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         4 ~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      .++++||++|.||+++|..|++.+.
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCC
Confidence            3799999999999999999998763

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=83.40  E-value=1.3  Score=37.57  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      +.+++++||++|.||+++|..|.+.+.
T Consensus       344 ~~~~i~iSAktg~GI~~L~~~L~~~l~  370 (449)
T PRK05291        344 GKPVIRISAKTGEGIDELREAIKELAF  370 (449)
T ss_pred             CCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence            356899999999999999999988663

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=83.28  E-value=1.4  Score=37.30  Aligned_cols=28  Identities=14%  Similarity=0.131  Sum_probs=24.1

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      +++|+++|||+ .||++.|..|.+.+.+.
T Consensus       335 ~~~~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       335 VLNSSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             CCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            56789999998 69999999999987643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0096|consensus

Probab=82.70  E-value=0.76  Score=34.43  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=24.5

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      ++.|+|.|||++-|.+.-|.-|++++.
T Consensus       143 nl~y~~iSaksn~NfekPFl~LarKl~  169 (216)
T KOG0096|consen  143 NLQYYEISAKSNYNFERPFLWLARKLT  169 (216)
T ss_pred             cceeEEeecccccccccchHHHhhhhc
Confidence            467999999999999999999999763

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=82.56  E-value=1.1  Score=39.30  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITN   25 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~   25 (177)
                      .+|+++||++|.||+++|..|+.
T Consensus       225 ~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       225 TIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             ceEEEEECCCCCChHHHHHhhhh
Confidence            46999999999999999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=82.23  E-value=1.1  Score=26.80  Aligned_cols=13  Identities=31%  Similarity=0.077  Sum_probs=8.8

Q ss_pred             CCCcEEEEeeCCC
Q psy1416          86 FPSGLRLVGNKND   98 (177)
Q Consensus        86 ~~~~~ilvgnK~D   98 (177)
                      .+.|+++|.||+|
T Consensus        46 ~~~P~i~V~nK~D   58 (58)
T PF06858_consen   46 PNKPVIVVLNKID   58 (58)
T ss_dssp             TTS-EEEEE--TT
T ss_pred             CCCCEEEEEeccC
Confidence            3789999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1144|consensus

Probab=81.75  E-value=4.3  Score=36.72  Aligned_cols=29  Identities=17%  Similarity=0.327  Sum_probs=23.3

Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416         121 LFETSAKDNINVEEMFMAITNLVLRSKKE  149 (177)
Q Consensus       121 ~~e~Sak~~~~v~~~f~~~~~~~~~~~~~  149 (177)
                      .+.|||.+|+||.+|...|+......+..
T Consensus       664 iVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  664 IVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             eeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence            45799999999999999888776655544

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=81.52  E-value=1.4  Score=38.59  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      +++|+++||++|.||+++|..|...+-
T Consensus       140 ~~~ii~vSA~tG~GI~eL~~~L~~l~~  166 (581)
T TIGR00475       140 NAKIFKTSAKTGQGIGELKKELKNLLE  166 (581)
T ss_pred             CCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence            478999999999999999998877543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>smart00275 G_alpha G protein alpha subunit

Probab=81.45  E-value=4.9  Score=32.86  Aligned_cols=62  Identities=27%  Similarity=0.256  Sum_probs=42.9

Q ss_pred             CCCcEEEEeeCCCCcCCC---------------ccCHHHHHHHHHH-----c------CCcEEEecCCCCCCHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKK---------------VVLTEDAQRFANQ-----M------GIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~---------------~v~~~~~~~~a~~-----~------~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .++|++|++||.|+-.+.               .-..+.+..|...     .      .+..+.|+|.+-.++..+|..+
T Consensus       250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v  329 (342)
T smart00275      250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV  329 (342)
T ss_pred             cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence            578999999999983210               0133445444433     1      1335689999999999999998


Q ss_pred             HHHHHHHH
Q psy1416         140 TNLVLRSK  147 (177)
Q Consensus       140 ~~~~~~~~  147 (177)
                      ...|++..
T Consensus       330 ~~~I~~~~  337 (342)
T smart00275      330 KDIILQRN  337 (342)
T ss_pred             HHHHHHHH
Confidence            88888754

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=81.25  E-value=3.4  Score=35.02  Aligned_cols=66  Identities=3%  Similarity=0.069  Sum_probs=39.8

Q ss_pred             hhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCC--CCCCHHHHHHHHH
Q psy1416          68 AWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK--DNINVEEMFMAIT  140 (177)
Q Consensus        68 Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak--~~~~v~~~f~~~~  140 (177)
                      .|....  |+.++..     .+.|+++|.||.|-....  +.+.+..+.+.++.+++.+|+.  +-..|..+|..++
T Consensus       164 ~y~~aEe~~i~eLk~-----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       164 DYVEAEERVIEELKE-----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             cchHHHHHHHHHHHh-----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            444442  7766632     278999999999943221  3444556667778877777663  3344555554444

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=80.31  E-value=2.6  Score=31.35  Aligned_cols=28  Identities=39%  Similarity=0.496  Sum_probs=25.2

Q ss_pred             cEEEeccC--CCCCHHHHHHHHHHHHHHHH
Q psy1416           4 QLFETSAK--DNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         4 ~f~EtSAk--~~~nV~~~F~~l~~~i~~~~   31 (177)
                      .|+++||+  ++.||+++|..+++.+....
T Consensus       159 ~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         159 ALLETSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             ceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence            38999999  99999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-20
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-07
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-07
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		9e-07
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-06
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-06
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-06
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-06
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-06
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-06
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-06
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-06
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-05
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-05
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-05
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-05
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-05
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-05
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-05
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-05
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-05
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-05
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-05
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-05
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-05
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-05
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-05
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-05
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-05
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-05
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-05
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-05
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-05
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-05
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-05
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-05
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-05
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-05
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		6e-05
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-05
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-05
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-04
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-04
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-04
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-04
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-04
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-04
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-04
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-04
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-04
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-04
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-04
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-04
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		6e-04
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		6e-04
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-04
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		6e-04
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		6e-04
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		7e-04
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-04
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-04
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		8e-04

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 177
Query: 152 ERQ 154
            +Q
Sbjct: 178 AKQ 180

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           LVGNK D   ++VV  ED +R A+ +G + FE SAK+NINV+++F  + +++
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           LVGNK D   ++VV +E  ++ A+ +G + FE SAKDNINV++ F  + +++     E
Sbjct: 118 LVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE 175

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK+D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK+D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           LVGNK D   ++VV +E  ++ A+ +G + FE SAKDNINV++ F  + +++
Sbjct: 115 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 109 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           LVGNK D  +++VV TE  Q  A Q+G   FE SAK+NI+V + F  + + +
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 135 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 89  GLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
            L L+GNK D   ++VV  ED ++ A + G+   ETSAK  +NV+  F AI 
Sbjct: 118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK+D    + V T++A+ FA + G+   ETSA D+ NVE  F  I   + R
Sbjct: 130 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK+D    + V T++A+ FA + G+   ETSA D+ NVE  F  I   + R
Sbjct: 118 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK  +NV E+FMAI 
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK  +NV E+FMAI 
Sbjct: 111 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK  +NV E+FMAI 
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ F
Sbjct: 143 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           + LVGNK+D    + V T++A+ FA + G+   ETSA D+ NVE  F  I
Sbjct: 113 IXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK+D  Q + V TE+A+ FA   G+   ETSA D+ NVE  F
Sbjct: 120 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 164

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK+D  Q + V TE+A+ FA   G+   ETSA D+ NVE  F
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           + L GNK D   K++V  E+AQ +A+   +   ETSAK  +NV ++F+AI   + +S+ +
Sbjct: 116 IALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 175

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   K+VV  + A+ FA+   +   ETSA D+ NVE+ F+ +     R  KE  
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA----RQIKESM 173
Query: 152 ERQVLNSDT--------VNIRKHT-TKPGGKKKCC 177
            +Q LN  T        VN++  + T  GG   CC
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGG---CC 205

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           + LVGNK+D    + V T++A+ FA + G+   ETSA D+ NVE  F  I
Sbjct: 119 IXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK+D    + V T++A+ FA + G+   ETSA D+ NVE  F  I
Sbjct: 139 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 113 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 163

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVGNK+D    + V T++A+ FA + G+   ETSA D+ NVE  F  I
Sbjct: 139 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 165

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI 
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   K+VV  + A+ FA+   +   ETSA D+ NVE+ F+ +     R  KE  
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA----RQIKESM 173
Query: 152 ERQVLNSDT--------VNIRKHT-TKPGGKKKCC 177
            +Q LN  T        VN++  + T  GG   CC
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGG--GCC 206

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
           LVGNK+D    + V T++A+ FA +  +   ETSA D+ NVEE F  I   + R  S+K+
Sbjct: 115 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174
Query: 150 QKERQVLNSDTVNIRKHTTKPG 171
             +R            H   PG
Sbjct: 175 IADRAA----------HDESPG 186

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           LVG K D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +
Sbjct: 118 LVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITNLVLR 145
           L LVGNK D    + +  +  ++FA Q+ G++  E SAKDN NV+E+F+ + + +L+
Sbjct: 134 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   K+VV +++ +  A+  GI+  ETSAK+  NVE+ F
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           + L GNK+D    + V  EDAQ +A + G+   ETSAK   NV+E+F  I   + R
Sbjct: 120 MALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           L LVGNK+D  + +VV  +  +  A ++GI   E+SAK++ NV E+F  +  L+
Sbjct: 111 LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           L LVGNK+D  + +VV  +  +  A ++GI   E+SAK++ NV E+F  +  L+
Sbjct: 111 LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           L LVGNK+D  + +VV  +  +  A ++GI   E+SAK++ NV E+F  +  L+
Sbjct: 128 LLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L+GNK D P ++ V    A+  A++ GI  FETSA    NVE+    + +L+++ + EQ 
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQC 204
Query: 152 ERQVLNSDTVN 162
             +    DTVN
Sbjct: 205 VEKTQIPDTVN 215

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           L LVGNK+D  + +VV  +  +  A ++GI   E+SAK++ NV E+F  +  L+
Sbjct: 115 LLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + + GNK D    + V  +DA+ +A  +G  + ETSAK+ IN+EE+F  I+
Sbjct: 131 MAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
           L LVGNK+D  + +VV  +  +  A ++GI   E+SAK++ NV E+F  +  L+
Sbjct: 111 LLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
           L+GNK+D   ++ V  E+ + FA + G+   ETSAK   NVEE F+
Sbjct: 120 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 165

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           L+GNK+D   ++ V  E+ + FA + G+   ETSAK   NVEE F+     + R
Sbjct: 131 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK---DNINVEEMFMAITN 141
           LVGNK D      V T+ AQ+FA+   + LFETSAK   DN +VE +FM + +
Sbjct: 132 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
           LVGNK D   K+ V TE+ +R A ++ +   ETSAK   NV+++F
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL-RSKKEQ 150
           L+GNK D P ++ V    A+  A + GI  FETSA    NVE+    + +L++ R +K  
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCV 191
Query: 151 KERQVLNSDTVN----IRKHTTKPGGKKKCC 177
           ++ QV   DTVN     +    KP  KK  C
Sbjct: 192 EKTQV--PDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + L GNK D   K+ V  ++AQ +A+   +   ETSAK + NV E+F AI 
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIA 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
           L +VGNK+D  +++ V  E+A+  A + G+Q  ETSAK   NV+++F  +   + R+KK
Sbjct: 116 LLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI-RTKK 173

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
           L+GNK D   ++ V  E+A++FA + G+   E SAK   NVE+ F+
Sbjct: 140 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 185

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
           L+GNK D   ++ V  E+A++FA + G+   E SAK   NVE+ F+
Sbjct: 125 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
           L +VGNK+D  +++ V  E+A+  A + G+Q  ETSAK   NV+++F  +   + R+KK
Sbjct: 112 LLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI-RTKK 169

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAI-TNLVLR 145
           L+GNK+D  + + V   +AQ  A    I    ETSAKD+ NVEE F+ + T L++R
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           +VGNK D  +++ V  ++A+ +A  +G + + TSAK N  +EE+F+ +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           +VGNK D  +++ V  ++A+ +A  +G + + TSAK N  +EE+F+ +
Sbjct: 130 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
           +VGNK D  +++ V  ++A+ +A  +G + + TSAK N  +EE+F+ +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-25
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	9e-10
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-22
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-07
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-22
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-09
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-22
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-08
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-21
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-08
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-21
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-08
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	5e-21
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-09
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	9e-21
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-07
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-20
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-07
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-20
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-07
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-20
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-07
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-20
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-07
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-20
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	4e-07
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-20
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-07
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-20
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	4e-07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-20
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-07
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-20
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	5e-07
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-20
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	6e-07
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-20
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	6e-20
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-06
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	7e-20
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-06
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-20
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-06
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-20
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	9e-07
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-19
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-06
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-19
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-19
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-06
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-19
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-07
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-19
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-07
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-19
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-06
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-19
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-06
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-19
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	6e-07
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-19
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	7e-06
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-19
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-08
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-19
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-05
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-19
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	7e-07
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-19
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-06
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-19
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-18
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-06
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-18
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	8e-06
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-18
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-06
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-18
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-05
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-18
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-05
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-18
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-06
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-18
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	8e-06
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-18
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-07
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	8e-18
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-06
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-18
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-06
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	9e-18
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-17
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-05
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-17
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	6e-07
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-06
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-17
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-04
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-17
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-06
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-17
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	7e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-17
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-05
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-17
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	7e-07
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-16
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	7e-07
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-16
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-05
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-05
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	7e-16
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-04
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	7e-16
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-06
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-15
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-04
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-15
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-05
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	6e-15
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	9e-07
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-15
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	8e-05
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	8e-14
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-04
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-13
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	8e-05
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-13
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-12
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-11
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-11
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-09
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-08
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-08
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	9e-08
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-07
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-07
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-07
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-06
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-05
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-04
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 95.8 bits (239), Expect = 2e-25
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
           LVGNK D   K+VV  + A+ FA+   +   ETSA D+ NVE+ F+ +   +    S++ 
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 177

Query: 150 QKERQVLNSDTVNIRKHTTKPGGKKKCC 177
             E      D  N+            CC
Sbjct: 178 LNETTQKKEDKGNVNLKGQSLTNTGGCC 205

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR--SKKEQKERQVLNSDTVNIRKHTTKPGGKK 58
             +   ETSA D+ NVE+ F+ +   +    S++   E      D  N+           
Sbjct: 143 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTG 202

Query: 59  KVC 61
             C
Sbjct: 203 GCC 205

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 87.8 bits (218), Expect = 4e-22
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   K+ V  E+ +R A ++ +   ETSAK   NV+++F  +    L   +  +
Sbjct: 126 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA-ALPGMESTQ 184

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           +R   +   + + K   +P  +  C 
Sbjct: 185 DRSREDMIDIKLEKPQEQPVSEGGCL 210

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
           + +   ETSAK   NV+++F  +   +      +  +     D ++I+    +     + 
Sbjct: 151 LNVMFIETSAKAGYNVKQLFRRVAAAL---PGMESTQDRSREDMIDIKLEKPQEQPVSEG 207

Query: 61  C 61
            
Sbjct: 208 G 208

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 87.3 bits (217), Expect = 4e-22
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           ++GNK D   ++V          ++  I  FETSAK+ INVE+ F  I    L+ ++ + 
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-QETEV 180

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           E      + + + K+       + C 
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCS 206

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
             I  FETSAK+ INVE+ F  I    L+ ++ + E      + + + K   +     + 
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIARNALK-QETEVELYNEFPEPIKLDK-NERAKASAES 204

Query: 61  C 61
           C
Sbjct: 205 C 205

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 86.1 bits (214), Expect = 8e-22
 Identities = 46/63 (73%), Positives = 54/63 (85%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF  IT LVLR+KK+  
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 177

Query: 152 ERQ 154
            +Q
Sbjct: 178 AKQ 180

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
           MGIQLFETSAK+N+NVEEMF  IT LVLR+KK+   +Q
Sbjct: 143 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 86.1 bits (214), Expect = 1e-21
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D   K+ V  E+A+  A Q  +   ETSAK   NV+++F  +   +   K E  
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           + +         ++ +     +++CC
Sbjct: 184 KEK-----NGKKKRKSLAKRIRERCC 204

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
             +   ETSAK   NV+++F  +   +   K E  +      +    +K  +     ++ 
Sbjct: 149 WNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSK------EKNGKKKRKSLAKRIRER 202

Query: 61  CTVL 64
           C +L
Sbjct: 203 CCIL 206

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 85.5 bits (212), Expect = 3e-21
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L+GNK D P ++ V    A+  A++ GI  FETSA    NVE+    + +L+++ + EQ 
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQC 204

Query: 152 ERQVLNSDTVN 162
             +    DTVN
Sbjct: 205 VEKTQIPDTVN 215

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVN 46
            GI  FETSA    NVE+    + +L+++ + EQ   +    DTVN
Sbjct: 171 YGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQCVEKTQIPDTVN 215

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 84.7 bits (210), Expect = 5e-21
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D  + +VV  +  +  A ++GI   E+SAK++ NV E+F  +  L+       K
Sbjct: 130 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKK 175
              V N    NI  ++      K 
Sbjct: 189 LVGVGNGKEGNISINSGSGNSSKS 212

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKK 59
           +GI   E+SAK++ NV E+F  +  L+       K   V N    NI  ++      K 
Sbjct: 154 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKS 212

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 83.4 bits (207), Expect = 9e-21
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +   +   K+   
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK--KRMGP 183

Query: 152 ERQVLNSDTVNIR 164
                 ++  N++
Sbjct: 184 GATAGGAEKSNVK 196

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIR 48
           +GI   ETSAK+  NVE+ FM +   +   K+         ++  N++
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIK--KRMGPGATAGGAEKSNVK 196

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 83.0 bits (206), Expect = 1e-20
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           L+GNK D   ++VV  ED ++ A + G+   ETSAK  +NV+  F AI   + R   + 
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
            G+   ETSAK  +NV+  F AI   + R   + 
Sbjct: 146 YGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 83.0 bits (206), Expect = 1e-20
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           LVGNK+D  Q + V TE+A+ FA   G+   ETSA D+ NVE  F  +   +     +Q
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
            G+   ETSA D+ NVE  F  +   +     +Q
Sbjct: 160 NGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L GNK+D   ++ V  E+A+  A + GI  FETSA +  N+      + +L+++  +   
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSV 191

Query: 152 ERQ 154
           ++ 
Sbjct: 192 DKS 194

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
            GI  FETSA +  N+      + +L+++  +   ++ 
Sbjct: 157 YGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDKS 194

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 24/84 (28%), Positives = 39/84 (46%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   ++VV +E  ++ A+ +G + FE SAKDNINV++ F  + +++     E  
Sbjct: 118 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 177

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKK 175
           +               T       
Sbjct: 178 DTADPAVTGAKQGPQLTDQQAPPH 201

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKK 59
           +G + FE SAKDNINV++ F  + +++     E  +               T       
Sbjct: 143 LGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPH 201

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 82.6 bits (205), Expect = 2e-20
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           ++GNK D   K+ V  E  ++ A   GI+  ETSAK NINVE  F  +   +     +  
Sbjct: 118 ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177

Query: 152 E 152
           +
Sbjct: 178 K 178

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
            GI+  ETSAK NINVE  F  +   +     +  +
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDIKAKMDKNWK 178

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D  +++ V  + A+ F+    +   ETSAK++ NVE++F+ +   ++   ++  
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNT 195

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
             +   ETSAK++ NVE++F+ +   ++   ++  
Sbjct: 161 QDMYYLETSAKESDNVEKLFLDLACRLISEARQNT 195

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 82.3 bits (204), Expect = 3e-20
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           LVGNK D   ++VV  ED +R A+ +G + FE SAK+NINV+++F  + +++     E
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
           +G + FE SAK+NINV+++F  + +++     E
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 81.9 bits (203), Expect = 4e-20
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           LVGNK D  +++VV TE  Q  A Q+G   FE SAK+NI+V + F  + + +     +
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
           +G   FE SAK+NI+V + F  + + +     +
Sbjct: 158 LGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 81.5 bits (202), Expect = 4e-20
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
           L+GNK D   ++ V  E+A++FA + G+   E SAK   NVE+ F+     + ++
Sbjct: 125 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
            G+   E SAK   NVE+ F+     + ++
Sbjct: 150 NGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 81.4 bits (202), Expect = 4e-20
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LV NK D      +  E+A+  A ++ ++ + TS K+++NV E+F  +    L+
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 45.9 bits (110), Expect = 6e-07
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
           + ++ + TS K+++NV E+F  +    L+
Sbjct: 139 LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 81.9 bits (203), Expect = 4e-20
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
           LVGNK+D    + V T++A+ FA +  +   ETSA D+ NVEE F  I   + R  S+K+
Sbjct: 115 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

Query: 150 QKERQVLNSDTVNIRKHTTKP 170
             +R   +    N     + P
Sbjct: 175 IADRAAHDESPGNNVVDISVP 195

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR--SKKEQKERQVLNSDTVNIRKHTTKP 54
             +   ETSA D+ NVEE F  I   + R  S+K+  +R   +    N     + P
Sbjct: 140 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVP 195

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 81.5 bits (202), Expect = 6e-20
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK D   KKVV    A+ FA+ +GI   ETSAK+  NVE+ FM +   + +
Sbjct: 143 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
           +GI   ETSAK+  NVE+ FM +   + +
Sbjct: 168 LGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 81.1 bits (201), Expect = 7e-20
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           L+GNK+D   ++ V  E+ + FA + G+   ETSAK   NVEE F+     + R  ++
Sbjct: 131 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
            G+   ETSAK   NVEE F+     + R  ++
Sbjct: 156 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 81.1 bits (201), Expect = 7e-20
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L GNK D    + V   +A RFA +  +   ETSA    NVEE F+     +L  K E  
Sbjct: 120 LCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN-KIESG 178

Query: 152 E 152
           E
Sbjct: 179 E 179

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
             +   ETSA    NVEE F+     +L  K E  E
Sbjct: 145 NELMFLETSALTGENVEEAFVQCARKILN-KIESGE 179

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 80.6 bits (200), Expect = 8e-20
 Identities = 17/55 (30%), Positives = 35/55 (63%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
           +VGNK D  +++ V  ++A+ +A  +G + + TSAK N  +EE+F+ +   ++ +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
           +G + + TSAK N  +EE+F+ +   ++ +
Sbjct: 141 VGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L GNK D   ++ V   +A RFA +  +   ETSA    NVEE F+     +L  K +  
Sbjct: 135 LCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN-KIDSG 193

Query: 152 E 152
           E
Sbjct: 194 E 194

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
             +   ETSA    NVEE F+     +L  K +  E
Sbjct: 160 NELMFLETSALTGENVEEAFLKCARTILN-KIDSGE 194

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 80.3 bits (199), Expect = 1e-19
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           L GNK+D    + V  EDAQ +A + G+   ETSAK   NV+E+F  I   + R +  +
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
            G+   ETSAK   NV+E+F  I   + R +  +
Sbjct: 147 NGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 17/59 (28%), Positives = 24/59 (40%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           LVGNK D    + +  E   RF  + G      SAK   +V   F  +   +L  K  +
Sbjct: 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
            G      SAK   +V   F  +   +L  K  +
Sbjct: 145 NGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQ 150
           +  NK D   ++ +  +           + FE SAK   N    F+ +      R     
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181

Query: 151 KERQVLNSDTVNIRKHTTKPGGKKK 175
                L    VN   H+ +      
Sbjct: 182 VSNVNLEPTEVNYDYHSPEESKYID 206

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 1   MGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKK 59
              + FE SAK   N    F+ +      R          L    VN   H+ +      
Sbjct: 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESKYID 206

Query: 60  VCT 62
              
Sbjct: 207 YME 209

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   ++ V   +A  F     +  FE SAK  +NV+E F  +   V + ++++ 
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
             +  FE SAK  +NV+E F  +   V + ++++ 
Sbjct: 144 HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           + GNK D    + V  +DA+ +A  +G  + ETSAK+ IN+EE+F  I+  +      +
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
           +G  + ETSAK+ IN+EE+F  I+  +      +
Sbjct: 158 IGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 79.5 bits (197), Expect = 2e-19
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
           + GNK D    + V+  DA+ +A+ +     ETSAK+ IN+ E+F+ I+  +  +
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
           +     ETSAK+ IN+ E+F+ I+  +  +
Sbjct: 141 IHAIFVETSAKNAININELFIEISRRIPST 170

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 79.5 bits (197), Expect = 2e-19
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           LVGNK+D   K+ V  E+A+  A Q  +   ETSAK   NV+++F  +   +   K E 
Sbjct: 128 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
             +   ETSAK   NV+++F  +   +   K E 
Sbjct: 153 WNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 79.6 bits (197), Expect = 3e-19
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           LVGNK+D    + V T++A+ FA + G+   ETSA D+ NVE  F  I 
Sbjct: 139 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 1   MGIQLFETSAKDNINVEEMFMAIT 24
            G+   ETSA D+ NVE  F  I 
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTIL 187

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 79.6 bits (197), Expect = 4e-19
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D+ Q+  V T +AQ  A +      ETSAK N NV+E+F  +  L  R      
Sbjct: 119 LVGNKCDETQR-EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
                            +    K  C
Sbjct: 178 IDG-------KRSGKQKRTDRVKGKC 196

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
                 ETSAK N NV+E+F  +  L  R                       +    K  
Sbjct: 143 WKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDG-------KRSGKQKRTDRVKGK 195

Query: 61  CTVL 64
           CT++
Sbjct: 196 CTLM 199

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 79.2 bits (196), Expect = 4e-19
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLF-ETSAKDNINVEEMFMAITNLVLR 145
           L+GNK+D  + + V   +AQ  A    I    ETSAKD+ NVEE F+ +   ++ 
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1   MGIQLF-ETSAKDNINVEEMFMAITNLVLR 29
             I    ETSAKD+ NVEE F+ +   ++ 
Sbjct: 164 YDILCAIETSAKDSSNVEEAFLRVATELIM 193

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 79.2 bits (196), Expect = 4e-19
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D  + + V  E+ +  A  +  +  ETSA  + N  E+F      + R ++ + 
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI-RLRRGRN 193

Query: 152 E 152
            
Sbjct: 194 H 194

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
           +  +  ETSA  + N  E+F      + R ++ +  
Sbjct: 160 LSCKHIETSAALHHNTRELFEGAVRQI-RLRRGRNH 194

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 78.7 bits (195), Expect = 4e-19
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   ++V+  E+ +  A        E+SAK+N    ++F  I     +      
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACS 175

Query: 152 ERQ 154
           + +
Sbjct: 176 QGK 178

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
                 E+SAK+N    ++F  I     +      + +
Sbjct: 141 WNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGK 178

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 78.3 bits (194), Expect = 5e-19
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
           L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV E+FMAI   + ++
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
             +   ETSAK ++NV E+FMAI   + ++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 77.6 bits (192), Expect = 1e-18
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
           LVGNK+D  + + V  E+ +  A  +  +  ETSA  + N  E+F      +   +
Sbjct: 114 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 169

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
           +  +  ETSA  + N  E+F      +   +
Sbjct: 139 LSCKHIETSAALHHNTRELFEGAVRQIRLRR 169

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 78.6 bits (194), Expect = 1e-18
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           L+GNK+D    + V TE+++ FA +  +   ETSA ++ NV++ F  + N + + K  + 
Sbjct: 123 LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ-KVSKH 181

Query: 152 ERQVLNSDTVNIRKHTTKPGGKK 174
           +  + +S         + P G  
Sbjct: 182 QMDLGDSSANGNANGASAPNGPT 204

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKK 58
             +   ETSA ++ NV++ F  + N + + K  + +  + +S         + P G  
Sbjct: 148 NQLLFTETSALNSENVDKAFEELINTIYQ-KVSKHQMDLGDSSANGNANGASAPNGPT 204

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 76.9 bits (190), Expect = 3e-18
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK D    + +  +  ++FA Q+ G++  E SAKDN NV+E+F+ + + +L+
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 21/28 (75%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLR 29
           G++  E SAKDN NV+E+F+ + + +L+
Sbjct: 163 GMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           LVGNK D   K+ V TE+ +R A ++ +   ETSAK   NV+++F  + 
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 1   MGIQLFETSAKDNINVEEMFMAIT 24
           + +   ETSAK   NV+++F  + 
Sbjct: 149 LNVMFIETSAKAGYNVKQLFRRVA 172

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 75.6 bits (187), Expect = 6e-18
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK+D   K+ V  E+A+  A+Q  +   ETSAK   NV+++F  +   +  
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
             +   ETSAK   NV+++F  +   +  
Sbjct: 139 WNVNYVETSAKTRANVDKVFFDLMREIRA 167

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 75.6 bits (187), Expect = 6e-18
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
           LVGNK D+   + V + +A+  A        ETSAK N NV+E+F  + NL  R  
Sbjct: 114 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
                 ETSAK N NV+E+F  + NL  R  
Sbjct: 139 WKCAFMETSAKLNHNVKELFQELLNLEKRRT 169

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 76.6 bits (189), Expect = 6e-18
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 92  LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAK-DNINVEEMFMAITNLVLRSKKE 149
           LV NK D  PQ+  V  + AQ +A    +  F+ SA     + +  F++I     R+ ++
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

Query: 150 QKE 152
           +  
Sbjct: 197 KVA 199

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 1   MGIQLFETSAK-DNINVEEMFMAITNLVLRSKKEQKE 36
             +  F+ SA     + +  F++I     R+ +++  
Sbjct: 163 NTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVA 199

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 75.7 bits (187), Expect = 7e-18
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D P +  V T+ AQ  A   GI   ETSAK    V++ F  +   + + K++  
Sbjct: 114 LVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 172

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
           +                K   K KC 
Sbjct: 173 KDG-----------KKKKKKSKTKCV 187

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
            GI   ETSAK    V++ F  +   + + K++  +                K    K  
Sbjct: 138 YGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSK------------DGKKKKKKSKTK 185

Query: 61  CTVL 64
           C ++
Sbjct: 186 CVIM 189

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 75.3 bits (186), Expect = 8e-18
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           LVGNK+D  + +VV  +  +  A ++GI   E+SAK++ NV E+F  +  L+      
Sbjct: 113 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
           +GI   E+SAK++ NV E+F  +  L+      
Sbjct: 137 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 75.7 bits (187), Expect = 8e-18
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 92  LVGNKND-DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKK 148
           ++GNK D +  KK+V  + AQ  A  +G I LF TSAK+ INV+  F  I    L+  +
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 3   IQLFETSAKDNINVEEMFMAITNLVLRSKK 32
           I LF TSAK+ INV+  F  I    L+  +
Sbjct: 152 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 181

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 75.8 bits (187), Expect = 9e-18
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 92  LVGNKND------DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK D         +K V     ++ A   G    ETSAKD  N+ E  + +   V +
Sbjct: 138 LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
            G    ETSAKD  N+ E  + +   V +
Sbjct: 169 YGALFCETSAKDGSNIVEAVLHLAREVKK 197

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 74.4 bits (184), Expect = 2e-17
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
           LVGNK D   ++ V + + +  A + G    ETSAK    V+E+F  I   +  +
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYA 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
            G    ETSAK    V+E+F  I   +  +
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQMNYA 167

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 74.9 bits (185), Expect = 2e-17
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           LVGNK D P +  V T+ A   A   GI   ETSAK    VE+ F  +   + + + ++
Sbjct: 131 LVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
            GI   ETSAK    VE+ F  +   + + + ++
Sbjct: 155 YGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D    + V   +  +FA +  +   E SAK    V+  F  +   ++++    +
Sbjct: 126 LVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184

Query: 152 ERQ 154
              
Sbjct: 185 SEN 187

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
             +   E SAK    V+  F  +   ++++    +   
Sbjct: 150 HSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 187

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK---DNINVEEMFMAIT 140
           LVGNK D      V T+ AQ+FA+   + LFETSAK   DN +VE +FM + 
Sbjct: 132 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 1   MGIQLFETSAK---DNINVEEMFMAIT 24
             + LFETSAK   DN +VE +FM + 
Sbjct: 157 HSMPLFETSAKNPNDNDHVEAIFMTLA 183

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 74.6 bits (184), Expect = 3e-17
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   ++ V   + ++ A   G    E+SA++N   + +F  +   + R +    
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

Query: 152 ERQ 154
           + +
Sbjct: 194 QER 196

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
            G    E+SA++N   + +F  +   + R +    + +
Sbjct: 159 WGATFMESSARENQLTQGIFTKVIQEIARVENSYGQER 196

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 73.3 bits (181), Expect = 4e-17
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
           LVGNK D  + + V  E+ +  A     +  ETSA    NV E+F  +   +   +++ 
Sbjct: 116 LVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
              +  ETSA    NV E+F  +   +   +++ 
Sbjct: 141 FDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 72.9 bits (180), Expect = 5e-17
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
           LVGNK+D  + + V  ++ +  A     +  ETSA  + NV+ +F  +   +   +
Sbjct: 111 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 166

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
              +  ETSA  + NV+ +F  +   +   +
Sbjct: 136 FDCKFIETSAALHHNVQALFEGVVRQIRLRR 166

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 73.0 bits (180), Expect = 8e-17
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 92  LVGNKND--DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKK 148
           LVG ++       +V+    A++ +  +     +ET A   +NVE +F  +   V+  +K
Sbjct: 124 LVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183

Query: 149 E 149
           +
Sbjct: 184 K 184

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
               +ET A   +NVE +F  +   V+  +K+
Sbjct: 153 RCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQ 150
           L GNK D   +KV     +  F  +  +Q ++ SAK N N E+ F+ +   L+     E 
Sbjct: 124 LCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 181

Query: 151 KERQVLNSDTVNI 163
                L    V +
Sbjct: 182 VAMPALAPPEVVM 194

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 1   MGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQKERQVLNSDTVNI 47
             +Q ++ SAK N N E+ F+ +   L+     E      L    V +
Sbjct: 147 KNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 194

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D  + + V   + +  A     +  ETSA    NV+E+F  I   V R +++ K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV-RLRRDSK 208

Query: 152 ER 153
           E+
Sbjct: 209 EK 210

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKER 37
             +  ETSA    NV+E+F  I   V R +++ KE+
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQV-RLRRDSKEK 210

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 70.2 bits (173), Expect = 6e-16
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK+D   +  V +  AQ  A   GI   ETSAK    VE+ F  +   + +
Sbjct: 113 LVGNKSDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
            GI   ETSAK    VE+ F  +   + +
Sbjct: 137 YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 70.3 bits (173), Expect = 7e-16
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN-INVEEMFMAITNLVLR 145
           LV NK D    + V  +  +  A +  I   ETSAKD  +NV++ F  +  ++ +
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1   MGIQLFETSAKDN-INVEEMFMAITNLVLR 29
             I   ETSAKD  +NV++ F  +  ++ +
Sbjct: 153 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 70.2 bits (173), Expect = 7e-16
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSK 147
           ++GNK D  +++V  TE+AQ +    G    FETSAKD  NV   F      VL ++
Sbjct: 121 ILGNKIDISERQVS-TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRSK 31
               FETSAKD  NV   F      VL ++
Sbjct: 147 DYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN-INVEEMFMAITNLVLRSKKEQ 150
           LVGNK D    + V TE+ ++ A ++    +E SA     N+ E+F  +   V R +  Q
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1   MGIQLFETSAKDN-INVEEMFMAITNLVLRSKKEQ 34
           +    +E SA     N+ E+F  +   V R +  Q
Sbjct: 162 LACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 69.4 bits (171), Expect = 1e-15
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK D   ++VV  E  Q  A Q       E+SAK  INV E+F  +   + R
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
                 E+SAK  INV E+F  +   + R
Sbjct: 139 CNCAFLESSAKSKINVNEIFYDLVRQINR 167

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 69.6 bits (170), Expect = 6e-15
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           +V  K D+  ++ +  +      ++  +Q+ ETSA+ N+NV+  F  +  L+ +
Sbjct: 203 VVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLIDK 255

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 46.5 bits (110), Expect = 9e-07
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
             +Q+ ETSA+ N+NV+  F  +  L+ +
Sbjct: 227 KNLQVVETSARSNVNVDLAFSTLVQLIDK 255

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 68.7 bits (168), Expect = 6e-15
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LV NK D   K  V   + Q++A    +   +TSAK   N++ +F  +   + +
Sbjct: 152 LVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLR 29
            +   +TSAK   N++ +F  +   + +
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 67.3 bits (164), Expect = 8e-14
 Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           +V NK D+     +  +        +  +    S K+   VE +  ++ + VL    +  
Sbjct: 155 VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL--HPDSI 212

Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
               L    + +++   +    ++  
Sbjct: 213 YGTPLAPSWIKVKEKLVEATTAQRYL 238

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
           +  +    S K+   VE +  ++ + VL    +      L    + +++   +    ++ 
Sbjct: 180 IENRFHRISCKNGDGVESIAKSLKSAVL--HPDSIYGTPLAPSWIKVKEKLVEATTAQRY 237

Query: 61  CT 62
             
Sbjct: 238 LN 239

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D  + + V   + +  A     +  ETSA    NV+E+F  I   V R +++ K
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV-RLRRDSK 177

Query: 152 ERQ 154
           E+ 
Sbjct: 178 EKN 180

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
              +  ETSA    NV+E+F  I   V R +++ KE+ 
Sbjct: 144 FDXKFIETSAAVQHNVKELFEGIVRQV-RLRRDSKEKN 180

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFMAITNLVLR 145
           L+GNK D  Q + V   +    A + G   FE SA  +  +V+ +F        R
Sbjct: 132 LLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 59.6 bits (145), Expect = 7e-12
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRF-ANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
              ++      +VV    A+   A+      +ET A   +NV+ +F  +   V+  +K+Q
Sbjct: 115 GTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174

Query: 151 K 151
           +
Sbjct: 175 Q 175

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
               +ET A   +NV+ +F  +   V+  +K+Q+
Sbjct: 142 RCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQ 175

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 92  LVGNKND---DPQKKVVLTEDAQRFANQMGIQL-----FETSAKDNINVEEMFMAITNLV 143
           LVG   D   + Q+K  +++  +   N+ G        F  + +++  + ++   I N  
Sbjct: 117 LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

Query: 144 LRSKKE 149
           L  K  
Sbjct: 177 LNFKIR 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 92  LVGNKND--DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKK 148
           LVG K D        V  ++      ++G +   E S+   I + E+F    + +  +K 
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191

Query: 149 EQK 151
             K
Sbjct: 192 VPK 194

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 92  LVGNKND---DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           LVGNK D   +  ++ V  E+ ++ A + G+  FETSAK   NV ++F+ I 
Sbjct: 113 LVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 21/95 (22%)

Query: 92  LVGNKND---DPQ-----KKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNL 142
           LVG K D   D         V+ +   +    Q+G     E S+K   NV+ +F     +
Sbjct: 118 LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 177

Query: 143 VLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177
           VL+  + ++                 K   +  C 
Sbjct: 178 VLQPPRRKE------------VPRRRKNHRRSGCS 200

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 13/73 (17%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
           LV NK D              +++ V T+D +  A ++      E SAK    V E+F  
Sbjct: 134 LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

Query: 139 ITNLVLRSKKEQK 151
            T   L+ +   +
Sbjct: 194 ATRAALQKRYGSQ 206

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 13/71 (18%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
           +VG K D                + V     Q  A  +G +   E SA+ + NV  +F  
Sbjct: 143 VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

Query: 139 ITNLVLRSKKE 149
              + L S+  
Sbjct: 203 AAEVALSSRGR 213

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 92  LVGNKND----------DPQKKVVLTEDAQRFANQMGIQLF-ETSAKDNINVEEMFMAIT 140
           LVG K D           P    + T   +     +G   + E S+K   NV+ +F A  
Sbjct: 117 LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

Query: 141 NLVLR 145
            +VL+
Sbjct: 177 RVVLQ 181

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 13/73 (17%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
           LVG K D            + +   +        A ++G ++  E SA     ++ +F  
Sbjct: 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

Query: 139 ITNLVLRSKKEQK 151
               VL     +K
Sbjct: 174 AIRAVLCPPPVKK 186

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 13/73 (17%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
           LVG ++D              ++K V  E A+  A ++      E SA    N++E+F A
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188

Query: 139 ITNLVLRSKKEQK 151
                ++    Q+
Sbjct: 189 AIVAGIQYSDTQQ 201

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
           LVGNK D              +++ V +E+ +  AN++      E SAK    V E+F  
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193

Query: 139 ITNLVLR 145
            T   L+
Sbjct: 194 ATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 13/66 (19%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
           LVG K D            + +   +        A ++G ++  E SA     ++ +F  
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

Query: 139 ITNLVL 144
               VL
Sbjct: 199 AIRAVL 204

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 92  LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
           L+G + D            D ++K +  E  Q+ A ++G     E SA     ++ +F  
Sbjct: 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

Query: 139 ITNLVL 144
               +L
Sbjct: 187 AIIAIL 192

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 92  LVGNKND---DPQ---------KKVVLTEDAQRFANQMG-IQLFETSAKDN-INVEEMFM 137
           L+G K D   D           +  +  E     A Q+G     E SA  +  ++  +F 
Sbjct: 136 LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195

Query: 138 AITNLVLRSKKEQKER 153
             + L L       ++
Sbjct: 196 TASMLCLNKPSPLPQK 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.9
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.72
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.71
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.71
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.68
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.67
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.66
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.66
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.65
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.65
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.65
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.64
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.64
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.63
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.63
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.63
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.61
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.61
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.61
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.6
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.6
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.6
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.59
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.59
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.58
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.58
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.58
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.58
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.57
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.57
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.57
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.57
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.57
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.57
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.57
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.57
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.56
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.56
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.56
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.56
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.55
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.55
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.55
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.55
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.55
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.55
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.54
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.53
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.53
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.53
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.52
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.52
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.52
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.52
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.52
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.52
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.51
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.51
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.51
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.5
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.5
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.5
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.5
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.49
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.49
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.48
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.48
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.48
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.48
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.48
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.45
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.45
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.45
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.45
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.43
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.43
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.42
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.4
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.4
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.4
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.39
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.39
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.37
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.35
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.34
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.34
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.34
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.34
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.02
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.33
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.33
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.31
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.3
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.27
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.27
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.26
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.26
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.25
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.25
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.24
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.24
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.22
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.2
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.19
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.18
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.17
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.15
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.12
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.11
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.11
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.08
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.07
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.04
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.01
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.01
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.94
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.9
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.88
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.87
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.84
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.78
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.74
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.69
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.67
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.67
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.64
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.6
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.58
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.58
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.57
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.51
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.4
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.4
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.37
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.36
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.34
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.24
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.23
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.2
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.19
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.19
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.15
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.15
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.13
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.11
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.08
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.0
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.99
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.98
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.97
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.92
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.8
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.75
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.75
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.75
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.72
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.68
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.66
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.64
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.61
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.59
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.58
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.53
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.49
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.47
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.46
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.45
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.41
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.4
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.36
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.35
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.3
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.24
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.22
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.18
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.11
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.06
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.85
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	96.84
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.83
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.82
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	96.74
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.66
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.55
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.54
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.51
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.5
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	96.48
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.41
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.41
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.25
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.02
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.01
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.82
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.69
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.53
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.45
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.27
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	95.05
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.51
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	94.25
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.04
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.48
1wxq_A	397	GTP-binding protein; structural genomics, riken st	93.42
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	93.27
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	93.16
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.93
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	92.72
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	92.53
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	92.34
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	92.22
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.12
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	92.09
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.48
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	91.28
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	90.72
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	90.57
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	90.55
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	90.39
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	89.6
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	89.44
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	89.39
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	87.75
1wb1_A	482	Translation elongation factor SELB; selenocysteine	87.73
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	87.26
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	86.88
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	86.66
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	86.13
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	85.82
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	83.63
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	83.52
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	82.95
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	81.49
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	81.41
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	81.2

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.90  E-value=3.2e-24  Score=162.45  Aligned_cols=86  Identities=26%  Similarity=0.323  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||+++. |+..+....  .+++|++|||||+||.+.|.|+.+++..+|+++++.|+|||||+|.||+++|..
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~--~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTER--GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhc--CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            59999999999998 998774322  357999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      |++.+....
T Consensus       170 i~~~i~~~~  178 (216)
T 4dkx_A          170 VAAALPGME  178 (216)
T ss_dssp             HHHHC----
T ss_pred             HHHHHHhhh
Confidence            999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.72  E-value=2.9e-17  Score=122.01  Aligned_cols=90  Identities=30%  Similarity=0.369  Sum_probs=78.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+....  ..++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           87 VYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 998774222  347899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKEQK  151 (177)
Q Consensus       139 ~~~~~~~~~~~~~  151 (177)
                      +++.+.+......
T Consensus       165 l~~~i~~~~~~~~  177 (206)
T 2bcg_Y          165 MARQIKESMSQQN  177 (206)
T ss_dssp             HHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999988765443

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=1.5e-17  Score=125.26  Aligned_cols=86  Identities=22%  Similarity=0.171  Sum_probs=74.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||.++. |+..+.... ...++|++|||||+||...|.|..+++..++..++++|+||||++|.||+++|..
T Consensus       118 Vydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~  196 (211)
T 2g3y_A          118 VYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEG  196 (211)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 987663221 2247899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+...
T Consensus       197 l~~~i~~~  204 (211)
T 2g3y_A          197 IVRQVRLR  204 (211)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.71  E-value=3e-17  Score=121.52  Aligned_cols=87  Identities=25%  Similarity=0.242  Sum_probs=76.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++|||||+||...+.+..+++..++..++++||++||++|.||+++|..
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           92 VFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 9887742 222347899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       171 l~~~i~~~~  179 (206)
T 2bov_A          171 LMREIRARK  179 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcc
Confidence            999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.68  E-value=1e-16  Score=118.66  Aligned_cols=86  Identities=21%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+.. .....++|++|||||+||...+.++.+++..+++.++++|+|+||++|.||+++|..
T Consensus       103 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~  181 (195)
T 3cbq_A          103 VFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  181 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH
Confidence            58999999999997 9987642 222247899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.+.
T Consensus       182 l~~~i~~~  189 (195)
T 3cbq_A          182 AVRQIRLR  189 (195)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99988653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.67  E-value=1.7e-16  Score=117.24  Aligned_cols=87  Identities=22%  Similarity=0.192  Sum_probs=74.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+|++.||.++. |+..+.... ...++|++|||||+||...+.+..+++..++..++++|+||||++|.||+++|..
T Consensus        87 v~dv~~~~s~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~  165 (192)
T 2cjw_A           87 VYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEG  165 (192)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHT-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh-CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHH
Confidence            48999999999997 876653221 2247899999999999877889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+....
T Consensus       166 l~~~~~~~~  174 (192)
T 2cjw_A          166 IVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999886543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.66  E-value=2.2e-16  Score=113.25  Aligned_cols=86  Identities=21%  Similarity=0.158  Sum_probs=75.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||..+. |+..+.. .....++|++|||||+||.+.+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHh-cccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            58999999999997 9877642 222347999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+..+
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.66  E-value=8.2e-17  Score=121.35  Aligned_cols=88  Identities=24%  Similarity=0.360  Sum_probs=72.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        92 V~D~~~~~s~~~~~~~l~~i~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           92 VYDISKSSSYENCNHWLSELREN--ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEC-CCHHHHHHHHHHHHHHHHH--CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 99877422  2347899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.+....
T Consensus       170 l~~~i~~~~~~  180 (223)
T 3cpj_B          170 LINTIYQKVSK  180 (223)
T ss_dssp             HHHHHTTCC--
T ss_pred             HHHHHHHHhhh
Confidence            99998865433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.65  E-value=2.9e-16  Score=115.16  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=75.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCC--cCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDD--PQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl--~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++++.||.++. |+..+... ....++|++|||||+||  ...+.++.+++..++..++ +.|+++||++|.||+++
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l  170 (184)
T 3ihw_A           92 VFSLEDEISFQTVYNYFLRLCSF-RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV  170 (184)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTT-SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence            58999999999987 99877422 22247899999999999  4578899999999999997 89999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         136 FMAITNLVLRSK  147 (177)
Q Consensus       136 f~~~~~~~~~~~  147 (177)
                      |..+++.+.+.+
T Consensus       171 f~~l~~~i~~~~  182 (184)
T 3ihw_A          171 FQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.65  E-value=4.6e-16  Score=112.65  Aligned_cols=90  Identities=20%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCC--cCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDD--PQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl--~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~  134 (177)
                      ++|++++.||..+. |+..+...... .+++|++|||||+||  ...+.++.+++..++..+ +++|+++||++|.||++
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR  158 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence            58999999999997 87655433222 257899999999999  456789999999999987 68999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy1416         135 MFMAITNLVLRSKKE  149 (177)
Q Consensus       135 ~f~~~~~~~~~~~~~  149 (177)
                      +|..+++.+.+....
T Consensus       159 lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          159 VFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.65  E-value=3.6e-16  Score=112.58  Aligned_cols=87  Identities=21%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+.... ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (175)
T 2nzj_A           84 VYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEG  162 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            58999999999997 987663221 2347899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+....
T Consensus       163 l~~~~~~~~  171 (175)
T 2nzj_A          163 VVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999887653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.65  E-value=6.7e-16  Score=114.39  Aligned_cols=116  Identities=26%  Similarity=0.314  Sum_probs=78.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc--CCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW--LFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|+++..||..+. |+..+......  ..++|++|||||+||. .+.+..+++..++. ..+++|+++||++|.||+++
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  165 (207)
T 1vg8_A           87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  165 (207)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence            48999999999997 98876432211  1468999999999998 56778889999988 67789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCC-C
Q psy1416         136 FMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKC-C  177 (177)
Q Consensus       136 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~C-C  177 (177)
                      |..+++.+.+....... ....+..+.+.+......++++| |
T Consensus       166 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          166 FQTIARNALKQETEVEL-YNEFPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHSCCCC-----------------
T ss_pred             HHHHHHHHHHhcccccc-ccCCCccccCCcccccccCCCCCCC
Confidence            99999999876543322 22234455555422222345556 6

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.64  E-value=3.3e-16  Score=111.96  Aligned_cols=86  Identities=20%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  157 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRA-RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG  157 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHC-C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Confidence            58999999999997 88776422 22357999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.++
T Consensus       158 l~~~~~~~  165 (166)
T 3q72_A          158 VVRQIRLR  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.64  E-value=6.3e-16  Score=112.43  Aligned_cols=88  Identities=28%  Similarity=0.355  Sum_probs=72.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+...  ...++|++|||||+||.+.+.++.+++..+++.++++|+++||++|.||+++|..
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEH--ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 99877422  2247899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.++...
T Consensus       165 l~~~i~~~~~~  175 (183)
T 2fu5_C          165 LARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999876543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=5.5e-16  Score=113.91  Aligned_cols=86  Identities=31%  Similarity=0.437  Sum_probs=76.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+...  ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (191)
T 3dz8_A          102 MYDITNEESFNAVQDWATQIKTY--SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER  179 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            58999999999997 99887432  2357999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.++.
T Consensus       180 l~~~i~~~~  188 (191)
T 3dz8_A          180 LVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=112.00  Aligned_cols=88  Identities=32%  Similarity=0.380  Sum_probs=76.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+...  ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        95 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           95 VYDVTDQESFNNVKQWLQEIDRY--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 98877322  2347899999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.+....
T Consensus       173 l~~~i~~~~~~  183 (196)
T 3tkl_A          173 MAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHhcc
Confidence            99999876543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.63  E-value=1.1e-15  Score=111.21  Aligned_cols=85  Identities=21%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCC-CCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK-DNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak-~~~~v~~~f~  137 (177)
                      +.|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..+++.++++|+++||+ +|.||+++|.
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A           96 VYSVTDKASFEHVDRFHQLILRV-KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence            58999999999997 98876422 223578999999999999888999999999999999999999999 9999999999


Q ss_pred             HHHHHHHH
Q psy1416         138 AITNLVLR  145 (177)
Q Consensus       138 ~~~~~~~~  145 (177)
                      .+++.+.+
T Consensus       175 ~l~~~i~~  182 (183)
T 3kkq_A          175 DLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.61  E-value=1.3e-15  Score=113.03  Aligned_cols=86  Identities=27%  Similarity=0.327  Sum_probs=75.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|++++.||..+. |+..+....  ..++|++|||||+||...+.++.+++..+++.+++ .|+++||++|.||+++|.
T Consensus       108 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  185 (201)
T 2hup_A          108 AYDITKRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL  185 (201)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence            58999999999997 998774222  35799999999999988788999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         138 AITNLVLRSK  147 (177)
Q Consensus       138 ~~~~~~~~~~  147 (177)
                      .+++.+.++.
T Consensus       186 ~l~~~i~~~~  195 (201)
T 2hup_A          186 RVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999987653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.61  E-value=1.8e-15  Score=111.12  Aligned_cols=86  Identities=27%  Similarity=0.348  Sum_probs=76.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..
T Consensus       100 v~d~~~~~s~~~~~~~l~~i~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A          100 VYDITRRETFNHLTSWLEDARQH--SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  177 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 99877422  2357899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.++.
T Consensus       178 l~~~i~~~~  186 (191)
T 2a5j_A          178 TAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.61  E-value=1.3e-15  Score=113.37  Aligned_cols=86  Identities=23%  Similarity=0.285  Sum_probs=75.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+...  ...++|++|||||+||...+.+..+++..++...+++|+++||++|.||+++|..
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          105 TYDITCEESFRCLPEWLREIEQY--ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 99877422  2347899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.++.
T Consensus       183 l~~~i~~~~  191 (201)
T 2ew1_A          183 LACRLISEA  191 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.60  E-value=4.5e-15  Score=108.02  Aligned_cols=88  Identities=27%  Similarity=0.294  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++|||||+||. .+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKR-VKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 9877642 2223579999999999997 4567889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.+....
T Consensus       160 l~~~~~~~~~~  170 (189)
T 4dsu_A          160 LVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhhh
Confidence            99999876543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.60  E-value=4.9e-16  Score=114.08  Aligned_cols=85  Identities=21%  Similarity=0.204  Sum_probs=74.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc-cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecC-CCCCCHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC-WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA-KDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa-k~~~~v~~~f  136 (177)
                      ++|++++.||..+. |+..+..... ...++|++|||||+||...+.++.+++..+++.+++.|+++|| ++|.||+++|
T Consensus        98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf  177 (187)
T 3c5c_A           98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF  177 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHH
Confidence            58999999999997 9987743211 1247899999999999888889999999999999999999999 8999999999


Q ss_pred             HHHHHHHH
Q psy1416         137 MAITNLVL  144 (177)
Q Consensus       137 ~~~~~~~~  144 (177)
                      ..+++.+.
T Consensus       178 ~~l~~~i~  185 (187)
T 3c5c_A          178 HEAVREAR  185 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998875

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.60  E-value=7e-16  Score=113.49  Aligned_cols=86  Identities=33%  Similarity=0.317  Sum_probs=72.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+........++|++|||||+||.. +.+..+++..++..++++|+++||++|.||+++|..
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE  164 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence            48999999999997 8766643333234789999999999975 667889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.++
T Consensus       165 l~~~~~~~  172 (199)
T 2gf0_A          165 LLTLETRR  172 (199)
T ss_dssp             HHHHCSSS
T ss_pred             HHHHHhhh
Confidence            99876543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.59  E-value=1e-15  Score=111.14  Aligned_cols=87  Identities=21%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDM-VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            58999999999997 98776322 22347899999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999887653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=2.8e-15  Score=110.54  Aligned_cols=87  Identities=25%  Similarity=0.287  Sum_probs=76.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~-~v~~~f~  137 (177)
                      +.|+++++||..+. |+..+... ....++|++|||||+||...+.++.+++..+++.++++|+++||++|. ||+++|.
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          105 VYDITDRGSFEEVLPLKNILDEI-KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-hCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            58999999999997 98777432 223578999999999998878899999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHH
Q psy1416         138 AITNLVLRSK  147 (177)
Q Consensus       138 ~~~~~~~~~~  147 (177)
                      .+++.+.++.
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999987653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.58  E-value=3.6e-15  Score=110.49  Aligned_cols=86  Identities=27%  Similarity=0.320  Sum_probs=76.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+....  ..++|++|||||+||...+.++.+++..+++..++.|+++||++|.||+++|..
T Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          104 VYDITSRETYNSLAAWLTDARTLA--SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHT--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 987763222  257899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.++.
T Consensus       182 l~~~i~~~~  190 (200)
T 2o52_A          182 CARTILNKI  190 (200)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.58  E-value=3.3e-15  Score=107.76  Aligned_cols=84  Identities=26%  Similarity=0.390  Sum_probs=73.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (179)
T 1z0f_A           94 VYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  171 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeCcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 98876422  2247899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       172 l~~~i~~  178 (179)
T 1z0f_A          172 AAKKIYQ  178 (179)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhh
Confidence            9987753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.58  E-value=3.9e-15  Score=109.03  Aligned_cols=85  Identities=31%  Similarity=0.511  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus       101 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A          101 MYDIANQESFAAVQDWATQIKTY--SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            58999999999997 99877422  2347899999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.++
T Consensus       179 l~~~i~~~  186 (189)
T 2gf9_A          179 LVDVICEK  186 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.58  E-value=3.7e-15  Score=108.45  Aligned_cols=86  Identities=27%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+...  ...++|++|||||+||...+.++.+++..++..++++|+++||++|.||+++|..
T Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           89 VYDITSRETYNALTNWLTDARML--ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            58999999999997 98776322  2257899999999999877889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.++.
T Consensus       167 l~~~~~~~~  175 (186)
T 2bme_A          167 CARKILNKI  175 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.57  E-value=6.2e-15  Score=109.03  Aligned_cols=88  Identities=31%  Similarity=0.478  Sum_probs=77.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTY--SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            58999999999997 98877422  2347899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.++...
T Consensus       165 l~~~i~~~~~~  175 (203)
T 1zbd_A          165 LVDVICEKMSE  175 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.57  E-value=2.4e-15  Score=108.58  Aligned_cols=86  Identities=23%  Similarity=0.224  Sum_probs=72.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ++|++++.||..+. |+..+...... ...+|++|||||+||.+.+.++.+++..+++.++++|+++||++|.||+++|.
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (178)
T 2hxs_A           86 VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ  165 (178)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            48999999999997 98877432211 12344899999999988788999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         138 AITNLVLR  145 (177)
Q Consensus       138 ~~~~~~~~  145 (177)
                      .+++.+.+
T Consensus       166 ~l~~~~~~  173 (178)
T 2hxs_A          166 KVAAEILG  173 (178)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.57  E-value=2.2e-15  Score=113.04  Aligned_cols=85  Identities=19%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             ccccchhhhhcc-cc-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLG-CG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~-~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|++++.||.. +. |+..+...   .+++|++|||||+||..            .+.++.+++..+++.+++ .|+|+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  181 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDY---CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG  181 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHH---CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence            599999999999 56 99877432   25799999999999976            378999999999999999 99999


Q ss_pred             cCCCCCC-HHHHHHHHHHHHHHHH
Q psy1416         125 SAKDNIN-VEEMFMAITNLVLRSK  147 (177)
Q Consensus       125 Sak~~~~-v~~~f~~~~~~~~~~~  147 (177)
                      ||++|.| |+++|..+++.+.+..
T Consensus       182 SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          182 SAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             ccCCCcccHHHHHHHHHHHHhccC
Confidence            9999998 9999999999887654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.57  E-value=7.4e-15  Score=106.05  Aligned_cols=87  Identities=55%  Similarity=0.731  Sum_probs=77.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+..   ..+++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           88 VYDVTSAESFVNVKRWLHEINQ---NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---HCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH---hCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            58999999999997 9887732   2247899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +.+.+.+....
T Consensus       165 l~~~~~~~~~~  175 (181)
T 3tw8_B          165 ITELVLRAKKD  175 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            99999876544

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.57  E-value=2.5e-15  Score=107.67  Aligned_cols=83  Identities=25%  Similarity=0.408  Sum_probs=73.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+....  ..++|++||+||+||...+.++.+++..+++.++++|+++||++|.||+++|..
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           85 VYDITDEDSFQKVKNWVKELRKML--GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH--GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            58999999999997 988764222  247899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.57  E-value=3.6e-15  Score=106.23  Aligned_cols=85  Identities=25%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+.. .....++|++||+||+|+.+.+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            48999999999997 9887742 222347899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.57  E-value=2.1e-15  Score=111.69  Aligned_cols=87  Identities=20%  Similarity=0.198  Sum_probs=74.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          102 VYSVTSLHSFQVIESLYQKLHEG-HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 98877422 22347899999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       181 l~~~i~~~~  189 (201)
T 3oes_A          181 VIQEIARVE  189 (201)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhh
Confidence            999987653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.57  E-value=4.5e-15  Score=107.22  Aligned_cols=87  Identities=25%  Similarity=0.265  Sum_probs=75.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++..||..+. |+..+.... ...++|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           87 VFAINDRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            48999999999997 987763222 2357899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       166 l~~~~~~~~  174 (181)
T 2fn4_A          166 LVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999887653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=8.1e-15  Score=106.00  Aligned_cols=85  Identities=32%  Similarity=0.473  Sum_probs=74.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++..||..+. |+..+....  ..++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        90 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  167 (180)
T 2g6b_A           90 LYDVTNKASFDNIQAWLTEIHEYA--QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  167 (180)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 988774222  257899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.+.
T Consensus       168 l~~~~~~~  175 (180)
T 2g6b_A          168 IAKELKRR  175 (180)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            99888654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.56  E-value=6.6e-15  Score=106.85  Aligned_cols=87  Identities=25%  Similarity=0.242  Sum_probs=75.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        96 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  174 (187)
T 2a9k_A           96 VFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  174 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            48999999999997 9887742 222347899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+.+
T Consensus       175 l~~~i~~~~  183 (187)
T 2a9k_A          175 LMREIRARK  183 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.56  E-value=8.8e-15  Score=104.33  Aligned_cols=83  Identities=27%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|++++.||..+. |+..+.... ...++|++|||||+||.+.+.+..+++..+++.+ +.+|+++||++|.||+++|.
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh-CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            48999999999997 987764322 2357899999999999888889999999999998 78999999999999999999


Q ss_pred             HHHHHH
Q psy1416         138 AITNLV  143 (177)
Q Consensus       138 ~~~~~~  143 (177)
                      .+++.+
T Consensus       160 ~l~~~i  165 (167)
T 1c1y_A          160 DLVRQI  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998876

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.56  E-value=1.2e-14  Score=106.01  Aligned_cols=88  Identities=25%  Similarity=0.461  Sum_probs=76.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++||+||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus       100 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  178 (195)
T 3bc1_A          100 LFDLTNEQSFLNVRNWISQLQM-HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM  178 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence            58999999999987 9887742 222257899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         139 ITNLVLRSKK  148 (177)
Q Consensus       139 ~~~~~~~~~~  148 (177)
                      +++.+.++..
T Consensus       179 l~~~~~~~~~  188 (195)
T 3bc1_A          179 LLDLIMKRME  188 (195)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.56  E-value=1.3e-14  Score=108.51  Aligned_cols=88  Identities=26%  Similarity=0.460  Sum_probs=76.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus       114 V~D~~~~~s~~~~~~~l~~i~~-~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  192 (217)
T 2f7s_A          114 MFDLTSQQSFLNVRNWMSQLQA-NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET  192 (217)
T ss_dssp             EEETTCHHHHHHHHHHHHTCCC-CCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHH-hcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHH
Confidence            58999999999997 9887632 222257899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         139 ITNLVLRSKK  148 (177)
Q Consensus       139 ~~~~~~~~~~  148 (177)
                      +++.+.++..
T Consensus       193 l~~~i~~~~~  202 (217)
T 2f7s_A          193 LLDLIMKRME  202 (217)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999887643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.55  E-value=1.1e-14  Score=104.11  Aligned_cols=84  Identities=29%  Similarity=0.472  Sum_probs=72.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ...++|++||+||+|| ..+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  158 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEH--ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  158 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            48999999999997 98777422  2247899999999999 45678899999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.++
T Consensus       159 l~~~~~~~  166 (170)
T 1g16_A          159 LAKLIQEK  166 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=106.97  Aligned_cols=86  Identities=29%  Similarity=0.310  Sum_probs=75.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..
T Consensus       104 v~D~~~~~s~~~~~~~l~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          104 VFDLTKHQTYAVVERWLKELYDH--AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHTT--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999987 98777322  2357899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.++.
T Consensus       182 l~~~i~~~~  190 (193)
T 2oil_A          182 VLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.55  E-value=4.7e-15  Score=105.93  Aligned_cols=82  Identities=32%  Similarity=0.405  Sum_probs=71.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+...  ..+++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           85 VYDITNEESFARAKNWVKELQRQ--ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 98877422  2357999999999999887888999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.55  E-value=7.1e-15  Score=108.17  Aligned_cols=85  Identities=29%  Similarity=0.485  Sum_probs=73.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..+++.. ++.|+++||++|.||+++|.
T Consensus       105 V~D~~~~~s~~~~~~~~~~i~~~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  182 (192)
T 2il1_A          105 VYDITKKETFDDLPKWMKMIDKY--ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL  182 (192)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence            48999999999997 98776322  2347899999999999888889999999999985 78999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         138 AITNLVLRS  146 (177)
Q Consensus       138 ~~~~~~~~~  146 (177)
                      .+++.+.++
T Consensus       183 ~l~~~i~~~  191 (192)
T 2il1_A          183 KLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.55  E-value=1.1e-14  Score=107.71  Aligned_cols=90  Identities=23%  Similarity=0.326  Sum_probs=66.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcC-CCccCHHHHHHHHHHcCCcEEEecCCC-CCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQ-KKVVLTEDAQRFANQMGIQLFETSAKD-NINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sak~-~~~v~~~  135 (177)
                      ++|+++..||..+. |+..+...... ..++|++|||||+||.. .+.++.+++..+++.++++|+++||++ |.||+++
T Consensus       103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l  182 (208)
T 2yc2_C          103 VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP  182 (208)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHH
Confidence            58999999999997 99877422110 14789999999999988 788999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1416         136 FMAITNLVLRSKKE  149 (177)
Q Consensus       136 f~~~~~~~~~~~~~  149 (177)
                      |..+++.+.+....
T Consensus       183 ~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          183 FLSIATTFYRNYED  196 (208)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.55  E-value=6.8e-15  Score=106.51  Aligned_cols=85  Identities=32%  Similarity=0.386  Sum_probs=73.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ..+++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           91 VFDVTNQASFERAKKWVQELQAQ--GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            48999999999997 99877432  2257899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.+.
T Consensus       169 l~~~~~~~  176 (181)
T 2efe_B          169 IARRLPRV  176 (181)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhc
Confidence            99877554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.54  E-value=1.2e-14  Score=103.95  Aligned_cols=82  Identities=26%  Similarity=0.363  Sum_probs=72.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+..  ...+.+|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        85 v~d~~~~~s~~~~~~~~~~l~~--~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           85 VYDITKEETFSTLKNWVRELRQ--HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH--HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHH--hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            58999999999997 9887743  22357899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.53  E-value=7.6e-15  Score=108.51  Aligned_cols=84  Identities=27%  Similarity=0.301  Sum_probs=71.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCc------CCCccCHHHHHHHHHHcCCcEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDP------QKKVVLTEDAQRFANQMGIQLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~------~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v  132 (177)
                      ++|+++..||..+. |+..+...  ...++|++|||||+||.      ..+.+..+++..++..++++|+++||++|.||
T Consensus       107 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv  184 (199)
T 2p5s_A          107 LYDVTCEKSFLNIREWVDMIEDA--AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI  184 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred             EEECCChHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence            48999999999997 98876322  22478999999999996      46788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         133 EEMFMAITNLVLR  145 (177)
Q Consensus       133 ~~~f~~~~~~~~~  145 (177)
                      +++|..+++.+.+
T Consensus       185 ~el~~~l~~~i~~  197 (199)
T 2p5s_A          185 VEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.53  E-value=8.7e-15  Score=104.12  Aligned_cols=84  Identities=24%  Similarity=0.272  Sum_probs=72.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+... ....+.|++||+||+|+...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRV-KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            58999999999997 88766322 22247899999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       160 l~~~~~  165 (167)
T 1kao_A          160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.53  E-value=8.8e-15  Score=104.45  Aligned_cols=83  Identities=22%  Similarity=0.306  Sum_probs=73.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+....   .+.|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            48999999999997 988774322   47899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.52  E-value=6.2e-15  Score=108.40  Aligned_cols=84  Identities=26%  Similarity=0.346  Sum_probs=73.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus       102 V~d~~~~~s~~~~~~~~~~i~~~--~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (192)
T 2fg5_A          102 VYDITKQDSFYTLKKWVKELKEH--GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG  179 (192)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            58999999999997 99877422  2347899999999999877888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       180 l~~~i~~  186 (192)
T 2fg5_A          180 ISRQIPP  186 (192)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHHh
Confidence            9987654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.52  E-value=3.6e-14  Score=104.15  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=71.1

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|++++.||..+.  |+..+...   .+++|++|||||+||...            +.++.+++..+++.+++ .|+++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEY---APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            48999999999983  98777422   247899999999999753            57899999999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ||++|.||+++|..+++.++
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998775

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.52  E-value=1.5e-14  Score=105.89  Aligned_cols=84  Identities=32%  Similarity=0.385  Sum_probs=70.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCC---CCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN---INVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~---~~v~~~  135 (177)
                      +.|+++..||..+. |+..+.. .....++|++|||||+||...+.+..+++..++..+++.|+++||++|   .||+++
T Consensus       100 v~D~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l  178 (189)
T 1z06_A          100 VYDMTNMASFHSLPAWIEECKQ-HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  178 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHH
Confidence            58999999999997 9887742 222357899999999999888889999999999999999999999999   999999


Q ss_pred             HHHHHHHHH
Q psy1416         136 FMAITNLVL  144 (177)
Q Consensus       136 f~~~~~~~~  144 (177)
                      |..+++.+.
T Consensus       179 ~~~l~~~i~  187 (189)
T 1z06_A          179 FMTLAHKLK  187 (189)
T ss_dssp             HHHHC----
T ss_pred             HHHHHHHHh
Confidence            999988764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.52  E-value=4.8e-15  Score=110.41  Aligned_cols=85  Identities=21%  Similarity=0.316  Sum_probs=72.0

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--------cCHHHHHHHHHHcCC-cEEEecCCC
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--------VLTEDAQRFANQMGI-QLFETSAKD  128 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--------v~~~~~~~~a~~~~~-~~~e~Sak~  128 (177)
                      +.|++++.||.++.  |+..+...   .+++|++|||||+||...+.        ++.+++..++..+++ +|+++||++
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRF---APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            48999999999983  98877422   23789999999999976554        488999999999996 899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy1416         129 NINVEEMFMAITNLVLRSK  147 (177)
Q Consensus       129 ~~~v~~~f~~~~~~~~~~~  147 (177)
                      |.||+++|..+++.+.+..
T Consensus       164 g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC-
T ss_pred             CCCHHHHHHHHHHHHhhhh
Confidence            9999999999999987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.52  E-value=1.9e-14  Score=105.36  Aligned_cols=84  Identities=19%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             ccccc------hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCC
Q psy1416          60 VCTVL------NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNIN  131 (177)
Q Consensus        60 ~~dit------~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~  131 (177)
                      +.|++      +.++|..+. |+.++.   ....++|++|||||+||...  +..+++..+++.+++ +|+++||++|.|
T Consensus       104 v~D~~~~~~~~~~~s~~~l~~~l~~~~---~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  178 (198)
T 3t1o_A          104 VADSAPNRLRANAESMRNMRENLAEYG---LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKG  178 (198)
T ss_dssp             EEECCGGGHHHHHHHHHHHHHHHHHTT---CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCSCEEECBGGGTBT
T ss_pred             EEECCcchhhHhHHHHHHHHHHHHhhc---cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCceEEEEecCCCcC
Confidence            48888      788998887 987762   22358999999999999754  788999999999999 999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy1416         132 VEEMFMAITNLVLRSKK  148 (177)
Q Consensus       132 v~~~f~~~~~~~~~~~~  148 (177)
                      |+++|..+++.+.++..
T Consensus       179 v~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          179 VFETLKEVSRLVLARVA  195 (198)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999987653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.52  E-value=1.5e-14  Score=106.34  Aligned_cols=84  Identities=18%  Similarity=0.248  Sum_probs=73.2

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC--CCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ--KKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~--~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~  134 (177)
                      +.|++++.||..+ . |+..+...   .+++|++|||||+||..  .+.+..+++..+++.+++. |+++||++|.||++
T Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A          101 CFAVNNRTSFDNISTKWEPEIKHY---IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            5899999999997 4 98776422   35799999999999975  4788999999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         135 MFMAITNLVLRS  146 (177)
Q Consensus       135 ~f~~~~~~~~~~  146 (177)
                      +|..+++.+.++
T Consensus       178 l~~~l~~~i~~~  189 (194)
T 3reg_A          178 VFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.51  E-value=1.3e-14  Score=103.75  Aligned_cols=84  Identities=27%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+.......+++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            48999999999997 88766433333357899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.51  E-value=8.7e-15  Score=106.81  Aligned_cols=83  Identities=19%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|++++.||.++ . |+..+...   .+++|++|||||+||..            .+.|+.+++..+++.++ .+|+++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           85 CFDISRPETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            5899999999998 5 98776422   24789999999999974            36789999999999988 689999


Q ss_pred             cCC-CCCCHHHHHHHHHHHHHH
Q psy1416         125 SAK-DNINVEEMFMAITNLVLR  145 (177)
Q Consensus       125 Sak-~~~~v~~~f~~~~~~~~~  145 (177)
                      ||+ +|.||+++|..+++.+++
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.51  E-value=1.2e-14  Score=104.73  Aligned_cols=83  Identities=28%  Similarity=0.364  Sum_probs=72.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+....  ..++|++||+||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 988774322  247899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       171 l~~~~~  176 (179)
T 2y8e_A          171 VAAALP  176 (179)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.50  E-value=5.4e-14  Score=101.57  Aligned_cols=87  Identities=31%  Similarity=0.336  Sum_probs=72.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCc-CCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDP-QKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~-~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~  134 (177)
                      +.|+++..||..+. |+..+.....  ...++|++|||||+||. ..+.+..+++..+++ ..+.+|+++||++|.||++
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (182)
T 1ky3_A           88 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  167 (182)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHH
Confidence            58999999999997 9887642221  12578999999999994 456788999999998 4678999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         135 MFMAITNLVLRS  146 (177)
Q Consensus       135 ~f~~~~~~~~~~  146 (177)
                      +|..+++.+.++
T Consensus       168 l~~~l~~~~~~~  179 (182)
T 1ky3_A          168 AFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.50  E-value=1.9e-14  Score=102.80  Aligned_cols=82  Identities=29%  Similarity=0.420  Sum_probs=71.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCC---CccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQK---KVVLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~---~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|++++.||..+. |+..+....  ..++|++|||||+|+...   +.+..+++..++..++++|+++||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            48999999999997 987774222  357899999999999765   778899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         136 FMAITNLV  143 (177)
Q Consensus       136 f~~~~~~~  143 (177)
                      |..+++.+
T Consensus       160 ~~~l~~~i  167 (170)
T 1ek0_A          160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHH
Confidence            99998654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.50  E-value=4.1e-14  Score=104.43  Aligned_cols=85  Identities=21%  Similarity=0.257  Sum_probs=73.3

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      ++|++++.||..+.  |+..+...   .+++|++|||||+||..            .+.+..+++..++..++. +|+++
T Consensus        98 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (201)
T 2q3h_A           98 CFSVVSPSSFQNVSEKWVPEIRCH---CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC  174 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence            48999999999983  98776422   24789999999999975            467889999999999997 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLRSK  147 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~~~  147 (177)
                      ||++|.||+++|..+++.+.+..
T Consensus       175 Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          175 SALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999887653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.50  E-value=7e-14  Score=102.27  Aligned_cols=85  Identities=24%  Similarity=0.335  Sum_probs=73.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++||+||+||. .+.+..+++..+++.+++.|+++||++|.||+++|..
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELET-YCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTT-CCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHH-hcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            58999999999997 9887742 2223578999999999995 4678889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.+.
T Consensus       172 l~~~~~~~  179 (195)
T 1x3s_A          172 LVEKIIQT  179 (195)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHhh
Confidence            99988754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.49  E-value=1.9e-14  Score=107.29  Aligned_cols=83  Identities=19%  Similarity=0.198  Sum_probs=71.4

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|++++.||.++ . |+..+...   .+++|++|||||+||..            .+.|+.+++..+++.++ ..|+++
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            5899999999998 5 98777422   24789999999999974            36789999999999988 689999


Q ss_pred             cCC-CCCCHHHHHHHHHHHHHH
Q psy1416         125 SAK-DNINVEEMFMAITNLVLR  145 (177)
Q Consensus       125 Sak-~~~~v~~~f~~~~~~~~~  145 (177)
                      ||+ +|.||+++|..+++.+++
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.49  E-value=2.7e-14  Score=106.80  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+....  ..+.|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           91 FFDVTSRITCQNLARWVKEFQAVV--GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH--CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            58999999999997 998774322  246899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       169 l~~~~~~~~  177 (218)
T 4djt_A          169 LARIFTGRP  177 (218)
T ss_dssp             HHHHHHCCT
T ss_pred             HHHHHhccc
Confidence            999887653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.48  E-value=8.8e-14  Score=103.30  Aligned_cols=85  Identities=29%  Similarity=0.465  Sum_probs=73.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+....  ..++|++||+||+|| ..+.+..+++..++..++++|+++||++|.||+++|..
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           99 VYDVTDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHT--TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 987774222  247899999999999 45678889999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       176 l~~~~~~~~  184 (213)
T 3cph_A          176 LAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.48  E-value=9e-14  Score=100.18  Aligned_cols=85  Identities=27%  Similarity=0.255  Sum_probs=71.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc--CCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW--LFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|+++..||..+. |+..+......  ..++|++|||||+|+. .+.+..+++..+++ ..+++|+++||++|.||+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (177)
T 1wms_A           86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  164 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence            58999999999997 98877422221  2578999999999997 56788999999998 56789999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         136 FMAITNLVLR  145 (177)
Q Consensus       136 f~~~~~~~~~  145 (177)
                      |..+++.+.+
T Consensus       165 ~~~l~~~~~~  174 (177)
T 1wms_A          165 FEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.48  E-value=5.1e-14  Score=105.38  Aligned_cols=84  Identities=21%  Similarity=0.226  Sum_probs=72.6

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|+++..||..+.  |+..+...   .+++|++|||||+||...            +.++.+++..+++.+++ +|+++
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHF---CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            48999999999983  98776322   247899999999999764            37888999999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ||++|.||+++|..+++.+.+.
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.48  E-value=1.3e-13  Score=100.73  Aligned_cols=86  Identities=27%  Similarity=0.292  Sum_probs=73.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++||+||+||.. +.+..+++..+++.++++|+++||++|.||+++|..
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKR-VKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHH-HhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 9877642 22234789999999999976 667889999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+.+
T Consensus       177 l~~~~~~~~  185 (190)
T 3con_A          177 LVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999887653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.48  E-value=1.2e-13  Score=97.99  Aligned_cols=83  Identities=27%  Similarity=0.250  Sum_probs=71.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+.. .....++|++||+||+|+.. +.+..+++..+++.++++++++||++|.||+++|..
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~-~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKR-VKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            48899999999987 9887642 22234789999999999976 567889999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       159 l~~~~~  164 (166)
T 2ce2_X          159 LVREIR  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.45  E-value=4.4e-14  Score=102.28  Aligned_cols=82  Identities=22%  Similarity=0.315  Sum_probs=70.0

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc----------cCHHHHHHHHHHcCC-cEEEecC
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV----------VLTEDAQRFANQMGI-QLFETSA  126 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa  126 (177)
                      +.|++++.||.++.  |+..+...   .+++|++|||||+||...+.          ++.+++..+++.++. +|+++||
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHY---APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            48999999999984  98777422   23789999999999976554          588999999999996 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy1416         127 KDNINVEEMFMAITNLVL  144 (177)
Q Consensus       127 k~~~~v~~~f~~~~~~~~  144 (177)
                      ++|.||+++|..+++.++
T Consensus       163 ~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.45  E-value=2.2e-13  Score=99.88  Aligned_cols=82  Identities=23%  Similarity=0.304  Sum_probs=71.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+....    +.|++||+||+| ...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus       123 v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  197 (208)
T 3clv_A          123 VFDISNSNTLDRAKTWVNQLKISS----NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYM  197 (208)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            58999999999987 988774221    389999999999 556788999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+.++
T Consensus       198 l~~~~~~~  205 (208)
T 3clv_A          198 LAEEIYKN  205 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988765

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.45  E-value=1.2e-13  Score=102.18  Aligned_cols=82  Identities=26%  Similarity=0.268  Sum_probs=70.9

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|++++.||..+ . |+..+...   .+++|++|||||+||...            +.+..+++..+++.++. .|+++
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            4899999999999 4 88766422   247899999999999765            67889999999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ||++|.||+++|..+++.++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998775

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.45  E-value=2.7e-15  Score=110.92  Aligned_cols=84  Identities=33%  Similarity=0.411  Sum_probs=65.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++..||..+. |+..+...  ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus       112 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          112 VYDVTDQESFNNVKQWLQEIDRY--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             CC-CCCSHHHHHHHHHHHHHHSC--C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            58999999999997 98877322  2247899999999999988888888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       190 l~~~l~~  196 (199)
T 3l0i_B          190 MAAEIKK  196 (199)
T ss_dssp             HTTTTTT
T ss_pred             HHHHHHH
Confidence            9876643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.43  E-value=2.7e-13  Score=100.77  Aligned_cols=84  Identities=24%  Similarity=0.247  Sum_probs=72.1

Q ss_pred             ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|++++.||..+ . |+..+...   .+++|++|||||+||...            +.+..+++..++..++. .|+++
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHF---CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            4899999999999 4 98776421   247899999999999764            56889999999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ||++|.||+++|..+++.+++.
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.43  E-value=1.6e-13  Score=99.56  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=71.1

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|++++.||..+.  |+..+...   .+++|++|||||+||...            +.++.+++..+++.++. +|+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHh---CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            58999999999984  88776422   237899999999999753            67889999999999997 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ||++|.||+++|..+++.+.+
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSC
T ss_pred             cCCCccCHHHHHHHHHHHHhc
Confidence            999999999999999988754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.42  E-value=7.4e-14  Score=107.64  Aligned_cols=82  Identities=22%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             ccccchh--hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-cCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNE--CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~--~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|++++  .||..+. |+..+..... ..++|++|||||+||...+.+  +++..++.. .+++|+++||++|.||+++
T Consensus       169 V~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~el  245 (255)
T 3c5h_A          169 GIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLA  245 (255)
T ss_dssp             EEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHH
T ss_pred             EEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHH
Confidence            5899998  9999997 9987743211 247899999999999876665  678888887 4889999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         136 FMAITNLVL  144 (177)
Q Consensus       136 f~~~~~~~~  144 (177)
                      |..+++.+.
T Consensus       246 f~~l~~~l~  254 (255)
T 3c5h_A          246 FSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998763

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.40  E-value=3.8e-14  Score=100.91  Aligned_cols=83  Identities=13%  Similarity=-0.055  Sum_probs=59.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++++||..+. |+..+... ....++|++|||||+||....  ..++...     ++...+++|+++||++|.||+
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  150 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  150 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHH
Confidence            58999999999987 88766322 222578999999999997542  2222221     112234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLR  145 (177)
Q Consensus       134 ~~f~~~~~~~~~  145 (177)
                      ++|..+++.+.+
T Consensus       151 ~l~~~l~~~i~~  162 (164)
T 1r8s_A          151 EGLDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHhh
Confidence            999999987754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.40  E-value=1.1e-13  Score=102.92  Aligned_cols=81  Identities=17%  Similarity=0.219  Sum_probs=68.7

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHcCCc-EEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQMGIQ-LFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~~~~-~~e~  124 (177)
                      +.|+++..||..+.  |+..+....   +++|++|||||+||...+            .+..+++..+++.++.. |+++
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            58999999999984  887764222   578999999999997653            38889999999999964 9999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLV  143 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~  143 (177)
                      ||++|.||+++|..+++.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.40  E-value=1.5e-13  Score=100.94  Aligned_cols=88  Identities=11%  Similarity=-0.038  Sum_probs=64.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc------CCCCcEEEEeeCCCCcCCCc---cCHHHHHHH-HHHcCCcEEEecCCC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW------LFPSGLRLVGNKNDDPQKKV---VLTEDAQRF-ANQMGIQLFETSAKD  128 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~------~~~~~~ilvgnK~Dl~~~~~---v~~~~~~~~-a~~~~~~~~e~Sak~  128 (177)
                      +.|+++..||..+. |+..+......      ..++|++|||||+||...+.   +....+... ++..++.|+++||++
T Consensus        93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  172 (199)
T 4bas_A           93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK  172 (199)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred             EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence            58999999999996 88766322111      13789999999999976532   111111111 245678899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy1416         129 NINVEEMFMAITNLVLRSK  147 (177)
Q Consensus       129 ~~~v~~~f~~~~~~~~~~~  147 (177)
                      |.||+++|..|++.+.+..
T Consensus       173 g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          173 GTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             TBTHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHHHh
Confidence            9999999999999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.39  E-value=2.3e-13  Score=100.67  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-----------------cCCcE
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-----------------MGIQL  121 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~  121 (177)
                      +.|+++++||..+. |+..+.... ...++|++|||||+||..  .++.+++..++..                 .+++|
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            48999999999997 987663221 224789999999999975  5778888877663                 34579


Q ss_pred             EEecCCCCCCHHHHHHHHHHH
Q psy1416         122 FETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus       122 ~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +++||++|.||+++|..+++.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.39  E-value=9.4e-13  Score=99.37  Aligned_cols=87  Identities=11%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             ccccchhhhhcccc---hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH---HHHHHHHHcC--CcEEEecCCCCCC
Q psy1416          60 VCTVLNECAWLGCG---WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE---DAQRFANQMG--IQLFETSAKDNIN  131 (177)
Q Consensus        60 ~~dit~~~Sf~~~~---w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~---~~~~~a~~~~--~~~~e~Sak~~~~  131 (177)
                      +.|+++..||....   |+..+.   ...+++|++|||||+||...+.+..+   .+..++...+  +.|+++||++|.|
T Consensus       115 v~d~~~~~s~~~~~~~~~~~~l~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  191 (228)
T 2qu8_A          115 IIDISEQCGLTIKEQINLFYSIK---SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVG  191 (228)
T ss_dssp             EEETTCTTSSCHHHHHHHHHHHH---TCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTT
T ss_pred             EEecccccCcchHHHHHHHHHHH---HhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCC
Confidence            48899999987432   554442   22247899999999999877777764   5667777777  8999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy1416         132 VEEMFMAITNLVLRSKKE  149 (177)
Q Consensus       132 v~~~f~~~~~~~~~~~~~  149 (177)
                      |+++|..+++.+.+....
T Consensus       192 i~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          192 VEQAKITACELLKNDQAE  209 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998876543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.37  E-value=3e-13  Score=99.41  Aligned_cols=80  Identities=15%  Similarity=0.092  Sum_probs=63.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH------------cCCcEEEecC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ------------MGIQLFETSA  126 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~------------~~~~~~e~Sa  126 (177)
                      +.|++++.||..+. |+..+... ....++|++|||||+||..  .++.+++.++...            .+++|+++||
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHHHHHHHHcc-hhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            48999999999997 88766322 1225789999999999975  5677777766543            3467999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy1416         127 KDNINVEEMFMAITNL  142 (177)
Q Consensus       127 k~~~~v~~~f~~~~~~  142 (177)
                      ++|.||+++|..+++.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.35  E-value=1.7e-13  Score=101.08  Aligned_cols=80  Identities=13%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             ccccchh--hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-------CCccCHHHHHHHHH----HcCCcEEEec
Q psy1416          60 VCTVLNE--CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-------KKVVLTEDAQRFAN----QMGIQLFETS  125 (177)
Q Consensus        60 ~~dit~~--~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-------~~~v~~~~~~~~a~----~~~~~~~e~S  125 (177)
                      ++|++++  +++..+. |+..+.   ...+++|++|||||+||..       .+.|..+++..+++    .+++.|++||
T Consensus       102 v~d~~~~~~~~~~~~~~~l~~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~S  178 (196)
T 3llu_A          102 VIDAQDDYMEALTRLHITVSKAY---KVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTS  178 (196)
T ss_dssp             EEETTSCCHHHHHHHHHHHHHHH---HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEEC
T ss_pred             EEECCCchHHHHHHHHHHHHHHH---hcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEE
Confidence            4888887  6666665 776542   1235899999999999754       46777888899999    7788999999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q psy1416         126 AKDNINVEEMFMAITNLV  143 (177)
Q Consensus       126 ak~~~~v~~~f~~~~~~~  143 (177)
                      |++ .||+++|..+++.+
T Consensus       179 a~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          179 IYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTS-THHHHHHHHHHHHT
T ss_pred             ech-hhHHHHHHHHHHHh
Confidence            999 99999999999865

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.34  E-value=3.1e-13  Score=101.33  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=69.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||..+. |+..+...   ..++|++|||||+||.+.+. . .++..++..+++.|+++||++|.||+++|..
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  168 (221)
T 3gj0_A           94 MFDVTSRVTYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  168 (221)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH---STTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 99877432   24789999999999976543 2 3667788999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+...
T Consensus       169 l~~~l~~~  176 (221)
T 3gj0_A          169 LARKLIGD  176 (221)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.34  E-value=1.8e-13  Score=99.96  Aligned_cols=84  Identities=17%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             ccccchh-hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC---HHHHHHHHHHcCCc----EEEecCCCCC
Q psy1416          60 VCTVLNE-CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL---TEDAQRFANQMGIQ----LFETSAKDNI  130 (177)
Q Consensus        60 ~~dit~~-~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~~~----~~e~Sak~~~  130 (177)
                      ++|+++. .||..+. |+..+...   .+++|++|||||+||...+.+.   .+.+..+++.++++    |+++||++|.
T Consensus        86 v~d~~~~~~s~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (184)
T 2zej_A           86 VYDLSKGQAEVDAMKPWLFNIKAR---ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEES  162 (184)
T ss_dssp             EEEGGGCHHHHHTHHHHHHHHHHH---CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCC
T ss_pred             EEeCCcchhHHHHHHHHHHHHHhh---CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCc
Confidence            4799997 5899997 99876322   2478999999999998665543   34566777777886    9999999997


Q ss_pred             -CHHHHHHHHHHHHHHH
Q psy1416         131 -NVEEMFMAITNLVLRS  146 (177)
Q Consensus       131 -~v~~~f~~~~~~~~~~  146 (177)
                       +++++|..+.+.+.+.
T Consensus       163 ~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          163 DALAKLRKTIINESLNF  179 (184)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHHhcc
Confidence             9999999998877654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.34  E-value=2.2e-13  Score=97.43  Aligned_cols=85  Identities=15%  Similarity=-0.010  Sum_probs=61.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---cCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|+++..||..+. |+..+.... ...++|++||+||+||...+.   +....+..++...+++|+++||++|.||+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  159 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence            48999999999987 876653221 124789999999999976532   1111111223334568999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         136 FMAITNLVLR  145 (177)
Q Consensus       136 f~~~~~~~~~  145 (177)
                      |..+++.+.+
T Consensus       160 ~~~l~~~i~~  169 (171)
T 1upt_A          160 MEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.34  E-value=1.1e-12  Score=103.57  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=71.4

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|++++.||..+.  |+..+...   .+++|++|||||+||...            +.++.+++..+++.+++ +|+++
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH---CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhh---CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            48999999999984  98776422   237899999999999653            67899999999999997 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ||++|.||+++|..+++.++.
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999988764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.02  E-value=1e-13  Score=102.73  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHcCC-cEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQMGI-QLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~~~-~~~e~  124 (177)
                      +.|++++.||..+.  |+..+...   .+++|++|||||+||...+            .+..+++..+++.+++ +|+++
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            58999999999984  88766322   1378999999999997543            6778889999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLV  143 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~  143 (177)
                      ||++|.||+++|..+++.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.33  E-value=1.2e-13  Score=101.61  Aligned_cols=82  Identities=11%  Similarity=-0.052  Sum_probs=59.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++++||..+. |+..+... ....++|++|||||+||....  ..++...     ++...+++|+++||++|.||+
T Consensus       103 v~D~~~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          103 VVDSNDRERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            58999999999997 88766322 222478999999999997542  2222221     112234579999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         134 EMFMAITNLVL  144 (177)
Q Consensus       134 ~~f~~~~~~~~  144 (177)
                      ++|..+++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.33  E-value=2.4e-13  Score=99.07  Aligned_cols=84  Identities=14%  Similarity=-0.057  Sum_probs=60.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++++||..+. |+..+.... ...++|++|||||+||...+.  .++.....     ...++.|+++||++|.||+
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            58999999999987 887653221 224789999999999976543  23332221     1234679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      ++|..+++.+.++
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.31  E-value=3.8e-13  Score=98.24  Aligned_cols=84  Identities=13%  Similarity=-0.061  Sum_probs=61.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++++||..+. |+..+... ....+.|++|||||+||....  ..++...     ++...+++|+++||++|.||+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            58999999999987 87665321 222478999999999997643  2222221     222345679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      ++|..+++.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.31  E-value=7.6e-12  Score=92.32  Aligned_cols=86  Identities=29%  Similarity=0.334  Sum_probs=73.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||.++. |+..+...  .....|+++||||+||...+.+..+++..++...++.|+++||+++.+++++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            38889999999986 98766321  2246899999999999887888889999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +.+.+.+..
T Consensus       162 l~~~~~~~~  170 (199)
T 2f9l_A          162 ILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.30  E-value=1.7e-13  Score=109.08  Aligned_cols=87  Identities=13%  Similarity=0.128  Sum_probs=66.4

Q ss_pred             ccccchhhhhcccchhhh-hhhhhccCCCCcEEEEeeCCCCcCC-------CccCHHHHHHHHHH----cCCcEEEecCC
Q psy1416          60 VCTVLNECAWLGCGWMTI-CPIIYCWLFPSGLRLVGNKNDDPQK-------KVVLTEDAQRFANQ----MGIQLFETSAK  127 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~-~~~~~~~~~~~~~ilvgnK~Dl~~~-------~~v~~~~~~~~a~~----~~~~~~e~Sak  127 (177)
                      +.|+|++ ++....|+.. +.......+++|++|||||+||..+       |.|..+++.++|+.    +++.||||||+
T Consensus        79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk  157 (331)
T 3r7w_B           79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF  157 (331)
T ss_dssp             ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred             EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence            3799998 4455554432 2222222358999999999999763       67888999999996    68999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy1416         128 DNINVEEMFMAITNLVLRSKK  148 (177)
Q Consensus       128 ~~~~v~~~f~~~~~~~~~~~~  148 (177)
                      + .+|+++|..+++.++....
T Consensus       158 d-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          158 D-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             S-SHHHHHHHHHHTTSSTTHH
T ss_pred             C-CcHHHHHHHHHHHHHhhHH
Confidence            8 5999999999998876543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.27  E-value=5.2e-12  Score=91.81  Aligned_cols=84  Identities=13%  Similarity=0.009  Sum_probs=62.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++.||..+. |+..+... ....++|++|||||+||...+  ..++......     ..+++|+++||++|.||+
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhC-hhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            58999999999987 88765322 122478999999999997653  3333333221     345689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      ++|..+++.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.27  E-value=2.5e-12  Score=101.53  Aligned_cols=76  Identities=17%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++++. ||..+. |+..+..     .++|++|||||+||.+.+.+  +++..+++.++  +.|++|||++|.||+++
T Consensus        91 V~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~l  163 (301)
T 1u0l_A           91 VVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEEL  163 (301)
T ss_dssp             EECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHH
Confidence            58999998 788887 9876632     37899999999999765544  56778888888  89999999999999999


Q ss_pred             HHHHHHH
Q psy1416         136 FMAITNL  142 (177)
Q Consensus       136 f~~~~~~  142 (177)
                      |..+...
T Consensus       164 f~~l~ge  170 (301)
T 1u0l_A          164 KEYLKGK  170 (301)
T ss_dssp             HHHHSSS
T ss_pred             HHHhcCC
Confidence            9877643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.26  E-value=4.7e-12  Score=92.29  Aligned_cols=83  Identities=11%  Similarity=-0.036  Sum_probs=63.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++.+||..+. |+..+... ....+.|++|||||+||...  +..++......     ..++.|+++||++|.||+
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhc-hhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            58999999999997 88776322 11247899999999999753  34455544432     345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLR  145 (177)
Q Consensus       134 ~~f~~~~~~~~~  145 (177)
                      ++|..+++.+..
T Consensus       167 ~l~~~l~~~~~~  178 (187)
T 1zj6_A          167 QGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.26  E-value=5.8e-12  Score=91.57  Aligned_cols=85  Identities=16%  Similarity=0.089  Sum_probs=66.4

Q ss_pred             cccccchhhhhccc-c-hhhh--------hhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-------E
Q psy1416          59 KVCTVLNECAWLGC-G-WMTI--------CPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-------L  121 (177)
Q Consensus        59 ~~~dit~~~Sf~~~-~-w~~~--------~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-------~  121 (177)
                      .+.+++|..||.++ . |...        +. ......++|++|||||+|+...+   .+++..+++.++.+       |
T Consensus        85 ~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T 2cxx_A           85 VAVLVVDGKAAPEIIKRWEKRGEIPIDVEFY-QFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVF  160 (190)
T ss_dssp             EEEEEEETTHHHHHHHHHHHTTCCCHHHHHH-HHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHE
T ss_pred             EEEEEEcchhhhhHHHhhhccCccHHHHHHH-HHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcE
Confidence            35788999999887 4 8753        11 11112478999999999998655   56788899998874       6


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416         122 FETSAKDNINVEEMFMAITNLVLRSK  147 (177)
Q Consensus       122 ~e~Sak~~~~v~~~f~~~~~~~~~~~  147 (177)
                      +++||++|.||+++|..+++.+.+..
T Consensus       161 ~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          161 IPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHhcchhh
Confidence            99999999999999999999887643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.25  E-value=6.9e-12  Score=91.63  Aligned_cols=84  Identities=8%  Similarity=-0.071  Sum_probs=63.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v  132 (177)
                      +.|+++..||..+. |+..+...... ..++|++|||||+||...  +..++...++.     ..++.|+++||++|.||
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  174 (190)
T 2h57_A           97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEGL  174 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence            48999999999997 88766322111 147899999999999753  45666666653     23568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         133 EEMFMAITNLVLR  145 (177)
Q Consensus       133 ~~~f~~~~~~~~~  145 (177)
                      +++|..+++.+.+
T Consensus       175 ~~l~~~l~~~i~~  187 (190)
T 2h57_A          175 QEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.25  E-value=1.2e-12  Score=94.83  Aligned_cols=84  Identities=13%  Similarity=0.088  Sum_probs=62.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-----MGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++..||..+. |+..+.. .....+.|++||+||+||...  ...++.......     .+++|+++||++|.||+
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           92 VVDSTDKDRMSTASKELHLMLQ-EEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTT-SSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHc-ChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            58999999999987 8876632 211357899999999999753  344444433322     23479999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      ++|..+++.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.24  E-value=7.4e-13  Score=96.88  Aligned_cols=83  Identities=12%  Similarity=-0.005  Sum_probs=59.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++.+||..+. |+..+... ....++|++|||||+||....  ..++.....     ...++.|+++||++|.||+
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            58999999999997 88766322 112478999999999997542  222222211     1234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLR  145 (177)
Q Consensus       134 ~~f~~~~~~~~~  145 (177)
                      ++|..+++.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.24  E-value=1.6e-11  Score=90.23  Aligned_cols=82  Identities=29%  Similarity=0.362  Sum_probs=70.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++..||.++. |+..+...  ...+.|+++|+||+||.+.+.+..+++..++...++.|+++||+++.+++++|..
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            47889999999987 98765321  2246899999999999887788899999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.22  E-value=6.7e-12  Score=91.10  Aligned_cols=80  Identities=11%  Similarity=-0.025  Sum_probs=59.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++..||..+. |+..+.... ...++|++|||||+||...  +..++...+.     ...++.|+++||++|.||+
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  171 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  171 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            58999999999987 876653221 1247899999999999753  3344444433     2235689999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         134 EMFMAITNL  142 (177)
Q Consensus       134 ~~f~~~~~~  142 (177)
                      ++|..+++.
T Consensus       172 ~l~~~l~~~  180 (181)
T 2h17_A          172 QGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.20  E-value=4.1e-12  Score=100.44  Aligned_cols=85  Identities=14%  Similarity=0.106  Sum_probs=69.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC--CCc----cCHHHHHHHHHHcC---CcEEEecCCCC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ--KKV----VLTEDAQRFANQMG---IQLFETSAKDN  129 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~--~~~----v~~~~~~~~a~~~~---~~~~e~Sak~~  129 (177)
                      ++|++++.||.++. |...+.......+++|++|||||+||..  .|.    +..+++..+++.+|   ++|++|||++ 
T Consensus        87 V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-  165 (307)
T 3r7w_A           87 VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-  165 (307)
T ss_dssp             EEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-
Confidence            58999999999996 7655533333345799999999999986  565    77789999999997   7899999999 


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy1416         130 INVEEMFMAITNLVLR  145 (177)
Q Consensus       130 ~~v~~~f~~~~~~~~~  145 (177)
                      .++.++|..+++.++.
T Consensus       166 ~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          166 ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             SHHHHHHHHHHHTTCS
T ss_pred             ChHHHHHHHHHHHHcC
Confidence            8999999999987644

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.19  E-value=2.7e-12  Score=92.01  Aligned_cols=74  Identities=19%  Similarity=0.123  Sum_probs=57.0

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|+++.   .... |+..+..     .+.|++|||||+|+...+.+.. ++..+++.++++|+++||++|.||+++|..+
T Consensus        89 ~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l  159 (165)
T 2wji_A           89 VDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAI  159 (165)
T ss_dssp             EETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred             ecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence            444443   3333 7765532     2689999999999976555553 4778899999999999999999999999999


Q ss_pred             HHHH
Q psy1416         140 TNLV  143 (177)
Q Consensus       140 ~~~~  143 (177)
                      ++.+
T Consensus       160 ~~~~  163 (165)
T 2wji_A          160 SIAV  163 (165)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.18  E-value=4.3e-12  Score=102.26  Aligned_cols=86  Identities=20%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             ccccch----------hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC---------------ccCHHHHHHH
Q psy1416          60 VCTVLN----------ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK---------------VVLTEDAQRF  113 (177)
Q Consensus        60 ~~dit~----------~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~---------------~v~~~~~~~~  113 (177)
                      +.|+++          ..+|.... |+..+.. .....++|++|||||+||..++               .++.+++..+
T Consensus       223 V~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~-~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~  301 (353)
T 1cip_A          223 CVALSDYDLVLAEDEEMNRMHESMKLFDSICN-NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY  301 (353)
T ss_dssp             EEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT-CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHH
T ss_pred             EEECccccccccccchhhhHHHHHHHHHHHHc-CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHH
Confidence            488888          45677765 7776632 2223579999999999995332               3788999999


Q ss_pred             HH-----------HcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416         114 AN-----------QMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       114 a~-----------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +.           ..++.|++|||++|.||+++|..+++.+++.
T Consensus       302 ~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          302 IQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            87           3567899999999999999999999988764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.17  E-value=3.9e-12  Score=101.57  Aligned_cols=83  Identities=13%  Similarity=-0.054  Sum_probs=59.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH-----HHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF-----ANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++.||..+. |+..+... ....++|++|||||+||.+...  .++....     +...+++|+++||++|.||+
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            48999999999997 76554322 2235799999999999976432  2222221     11234569999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLR  145 (177)
Q Consensus       134 ~~f~~~~~~~~~  145 (177)
                      ++|..|++.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.15  E-value=1.1e-11  Score=99.82  Aligned_cols=87  Identities=20%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             ccccc----------hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--c-------------------CH
Q psy1416          60 VCTVL----------NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--V-------------------LT  107 (177)
Q Consensus        60 ~~dit----------~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--v-------------------~~  107 (177)
                      ++|+|          +..||..+. |++.+... ....++|++|||||+||..++.  +                   +.
T Consensus       213 v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~  291 (354)
T 2xtz_A          213 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEI  291 (354)
T ss_dssp             EEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHH
T ss_pred             EEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCH
Confidence            48888          888998886 88766322 2235799999999999964332  2                   25


Q ss_pred             HHHHHHHHH----------------cCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416         108 EDAQRFANQ----------------MGIQLFETSAKDNINVEEMFMAITNLVLRSK  147 (177)
Q Consensus       108 ~~~~~~a~~----------------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~  147 (177)
                      +++..++..                ..+.|++|||+++.||+++|..+++.+++..
T Consensus       292 ~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~  347 (354)
T 2xtz_A          292 EHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRN  347 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHH
Confidence            778887553                1234689999999999999999999887653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.12  E-value=6.9e-12  Score=93.31  Aligned_cols=83  Identities=13%  Similarity=0.099  Sum_probs=50.5

Q ss_pred             ccccchhh-hhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC------------------------------
Q psy1416          60 VCTVLNEC-AWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL------------------------------  106 (177)
Q Consensus        60 ~~dit~~~-Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~------------------------------  106 (177)
                      +.|+++.. ++..+.  |...+........++|++|||||+||...+.+.                              
T Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~  164 (214)
T 2fh5_B           85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA  164 (214)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred             EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence            46777743 465553  443332212223478999999999997654311                              


Q ss_pred             ----HHHHHHHHHHc---CCcEEEecCCCC------CCHHHHHHHHHHH
Q psy1416         107 ----TEDAQRFANQM---GIQLFETSAKDN------INVEEMFMAITNL  142 (177)
Q Consensus       107 ----~~~~~~~a~~~---~~~~~e~Sak~~------~~v~~~f~~~~~~  142 (177)
                          .+++..|+.+.   ++.|+||||++|      .||+++|..+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                11111111111   567999999999      9999999999875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.11  E-value=4.8e-12  Score=91.55  Aligned_cols=76  Identities=13%  Similarity=-0.018  Sum_probs=56.5

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      +.|+++..||....|+..+...  ...++|++|||||+||.....       .++...+.+|+++||++|.||+++|..+
T Consensus        90 v~D~~~~~s~~~~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l  160 (172)
T 2gj8_A           90 MVDGTTTDAVDPAEIWPEFIAR--LPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHL  160 (172)
T ss_dssp             EEETTTCCCCSHHHHCHHHHHH--SCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHh--cccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHH
Confidence            4888999998865587766322  224789999999999964321       1223356789999999999999999999


Q ss_pred             HHHHH
Q psy1416         140 TNLVL  144 (177)
Q Consensus       140 ~~~~~  144 (177)
                      ++.+.
T Consensus       161 ~~~~~  165 (172)
T 2gj8_A          161 KQSMG  165 (172)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            87653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.11  E-value=1.8e-11  Score=89.03  Aligned_cols=80  Identities=20%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             ccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416          62 TVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  140 (177)
Q Consensus        62 dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~  140 (177)
                      .+.|..+|.... |+..+..     .++|++||+||+|+...+.+. .++..+++.++++|+++||++|.||+++|..++
T Consensus        91 ~v~d~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  164 (188)
T 2wjg_A           91 NIVDATALERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAIS  164 (188)
T ss_dssp             EEEEGGGHHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred             EEecchhHHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHH
Confidence            345556676665 8766532     368999999999997655555 467788999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         141 NLVLRSK  147 (177)
Q Consensus       141 ~~~~~~~  147 (177)
                      +.+.+..
T Consensus       165 ~~~~~~~  171 (188)
T 2wjg_A          165 IAVKDKK  171 (188)
T ss_dssp             HHHTTC-
T ss_pred             HHHHhcc
Confidence            8876543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.08  E-value=3e-11  Score=98.71  Aligned_cols=87  Identities=20%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             ccccch----------hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---c--------------------
Q psy1416          60 VCTVLN----------ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---V--------------------  105 (177)
Q Consensus        60 ~~dit~----------~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---v--------------------  105 (177)
                      +.|+|+          ..||..+. |+..+.. .....++|++|||||+||...+.   +                    
T Consensus       247 V~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~-~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~  325 (402)
T 1azs_C          247 VVASSSYNMVIREDNQTNRLQEALNLFKSIWN-NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  325 (402)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT-CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCC
T ss_pred             EEECcccccccccccccchHHHHHHHHHHHHh-cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccc
Confidence            489999          89999987 9877632 22335799999999999965443   2                    


Q ss_pred             -------CHHHHHHHHH-----H--------cCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416         106 -------LTEDAQRFAN-----Q--------MGIQLFETSAKDNINVEEMFMAITNLVLRSK  147 (177)
Q Consensus       106 -------~~~~~~~~a~-----~--------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~  147 (177)
                             +.+++..|+.     .        .++.|++|||+++.||+++|..+.+.+++..
T Consensus       326 ~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          326 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence                   1466776642     2        2456789999999999999999998887654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.07  E-value=2.5e-11  Score=98.12  Aligned_cols=86  Identities=16%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             ccccch----------hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC----------------ccCHHHHHH
Q psy1416          60 VCTVLN----------ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK----------------VVLTEDAQR  112 (177)
Q Consensus        60 ~~dit~----------~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~  112 (177)
                      +.|+++          ..+|.... |+..+.. .....++|+||||||+||..++                .++.+++..
T Consensus       231 v~dls~~dq~l~ed~~~n~~~es~~~~~~i~~-~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~  309 (362)
T 1zcb_A          231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVN-NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK  309 (362)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHT-CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred             EEECccccccccccccccHHHHHHHHHHHHhc-chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence            478888          77898886 8776632 2223579999999999996432                377889988


Q ss_pred             HHH-----------HcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416         113 FAN-----------QMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       113 ~a~-----------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      |+.           ..++.|++|||+++.||+++|..+++.+++.
T Consensus       310 ~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          310 FLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            872           3457799999999999999999999988765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.06  E-value=1.9e-11  Score=97.39  Aligned_cols=84  Identities=24%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             ccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC----------------ccCHHHHHHHHH---------
Q psy1416          62 TVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK----------------VVLTEDAQRFAN---------  115 (177)
Q Consensus        62 dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~~a~---------  115 (177)
                      |.++..+|.... |+..+.. .....++|++|||||+||..++                .++.+++..|+.         
T Consensus       209 d~~~~nr~~es~~~~~~i~~-~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~  287 (327)
T 3ohm_A          209 ESDNENRMEESKALFRTIIT-YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD  287 (327)
T ss_dssp             SCTTSBHHHHHHHHHHHHHT-SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT
T ss_pred             ccccHhHHHHHHHHHHHHhh-hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc
Confidence            344667776665 7766532 2233579999999999996544                578899998843         


Q ss_pred             -HcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416         116 -QMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       116 -~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                       ..++.+++|||+++.||+++|..+++.|++.
T Consensus       288 ~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          288 SDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence             4567789999999999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.04  E-value=9e-11  Score=92.62  Aligned_cols=77  Identities=17%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC-HHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416          60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL-TEDAQRFANQMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~-~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      ..|++++. ||..+. |+..+..     .++|++||+||+||.+++.+. .++...+++.++++++++||++|.||+++|
T Consensus        86 V~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~  160 (302)
T 2yv5_A           86 VETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELV  160 (302)
T ss_dssp             EECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            48999886 898887 9876532     378999999999997654333 456677777889999999999999999999


Q ss_pred             HHHHH
Q psy1416         137 MAITN  141 (177)
Q Consensus       137 ~~~~~  141 (177)
                      ..+..
T Consensus       161 ~~l~G  165 (302)
T 2yv5_A          161 DYLEG  165 (302)
T ss_dssp             HHTTT
T ss_pred             hhccC
Confidence            87653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.01  E-value=1.6e-10  Score=84.30  Aligned_cols=78  Identities=10%  Similarity=0.039  Sum_probs=54.0

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH--HHHHH-HHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT--EDAQR-FANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~~~~~-~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      .|+++..++....++..+..     .++|++||+||+|+...+.+..  +++.+ ++...+.+|+++||++|.||+++|.
T Consensus       113 ~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  187 (195)
T 1svi_A          113 VDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWG  187 (195)
T ss_dssp             EETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHH
Confidence            56777777665532222211     3689999999999987654432  23332 3333467899999999999999999


Q ss_pred             HHHHHH
Q psy1416         138 AITNLV  143 (177)
Q Consensus       138 ~~~~~~  143 (177)
                      .+++.+
T Consensus       188 ~l~~~l  193 (195)
T 1svi_A          188 AIKKMI  193 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.01  E-value=1.8e-10  Score=83.78  Aligned_cols=58  Identities=17%  Similarity=0.233  Sum_probs=47.6

Q ss_pred             CCcEEEEeeCCCCcCC--CccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQK--KVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ++|++|||||+|+...  +.+..+++..++...+ ++|+++||++|.||+++|..+++.+.
T Consensus       133 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          133 NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            6899999999999643  3445567777777744 78999999999999999999998774

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.94  E-value=1.4e-10  Score=81.80  Aligned_cols=52  Identities=25%  Similarity=0.296  Sum_probs=42.9

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ++|++|||||+|+...+    +++..++ .+++ +|+++||++|.||+++|..+++.+
T Consensus       108 ~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          108 GKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             TCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            68999999999997542    3445566 6777 899999999999999999998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.92  E-value=1.3e-09  Score=87.77  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=63.8

Q ss_pred             ccccchhh--hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416          60 VCTVLNEC--AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~~--Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f  136 (177)
                      +.|+++..  ++.... |+..+....   .+.|+++|+||+|+...+.+  +++..++...+.+++++||++|.||+++|
T Consensus       253 V~D~s~~~~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~  327 (357)
T 2e87_A          253 IFDPSEHCGFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVK  327 (357)
T ss_dssp             EECTTCTTSSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHH
T ss_pred             EEeCCccccCCHHHHHHHHHHHHHhc---CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHH
Confidence            47777776  566665 877663221   26899999999999765433  56677788889999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         137 MAITNLVLRS  146 (177)
Q Consensus       137 ~~~~~~~~~~  146 (177)
                      ..+.+.+...
T Consensus       328 ~~i~~~l~~~  337 (357)
T 2e87_A          328 EEIIKTLRPL  337 (357)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.92  E-value=8.1e-10  Score=93.40  Aligned_cols=80  Identities=15%  Similarity=0.060  Sum_probs=61.1

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|++   +++.+. |+..+...   .++.|++|||||+|+...+.+..+++..++...+++|+++||++|.||+++|..+
T Consensus       129 ~D~s---~~~~~~~~~~~l~~~---~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l  202 (535)
T 3dpu_A          129 LDSR---TDSNKHYWLRHIEKY---GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL  202 (535)
T ss_dssp             ECGG---GGGGHHHHHHHHHHH---SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHH
T ss_pred             EeCC---CchhHHHHHHHHHHh---CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHH
Confidence            5444   455665 98877422   1368999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         140 TNLVLRS  146 (177)
Q Consensus       140 ~~~~~~~  146 (177)
                      ++.+.+.
T Consensus       203 ~~~~~~~  209 (535)
T 3dpu_A          203 KSAVLHP  209 (535)
T ss_dssp             HHHHTCT
T ss_pred             HHHHhcc
Confidence            9887543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.91  E-value=3.8e-10  Score=87.77  Aligned_cols=76  Identities=14%  Similarity=0.039  Sum_probs=58.1

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      +.|.++.+++.  .|...+..     .++|++||+||+|+...+.+. .++..+++.++++++++||++|.||+++|..+
T Consensus        87 V~D~t~~e~~~--~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i  158 (272)
T 3b1v_A           87 VVDATNLERNL--YLTTQLIE-----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKA  158 (272)
T ss_dssp             EEEGGGHHHHH--HHHHHHHH-----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHH
T ss_pred             EecCCchHhHH--HHHHHHHh-----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHH
Confidence            35666655442  26544421     378999999999997655555 46678899999999999999999999999999


Q ss_pred             HHHH
Q psy1416         140 TNLV  143 (177)
Q Consensus       140 ~~~~  143 (177)
                      ++.+
T Consensus       159 ~~~~  162 (272)
T 3b1v_A          159 AHTT  162 (272)
T ss_dssp             HHSC
T ss_pred             HHHH
Confidence            8754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.90  E-value=1.9e-09  Score=77.34  Aligned_cols=58  Identities=16%  Similarity=0.117  Sum_probs=43.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-------C--CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-------G--IQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-------~--~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .++|++|||||+||...   ..++........       +  ++|+++||++|.||+++|..+++.+...
T Consensus       106 ~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          106 ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            36899999999999753   223333333322       2  4799999999999999999999887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.88  E-value=5.9e-10  Score=86.01  Aligned_cols=76  Identities=17%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  140 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~  140 (177)
                      .|.++.+++.  .|+..+..     .++|++||+||+|+...+.+.. ++..+++.++++++++||++|.||+++|..++
T Consensus        91 ~D~t~~~~~~--~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~  162 (258)
T 3a1s_A           91 ADSVNPEQSL--YLLLEILE-----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIV  162 (258)
T ss_dssp             EETTSCHHHH--HHHHHHHT-----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             eCCCchhhHH--HHHHHHHh-----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHH
Confidence            5555544432  25544421     2689999999999976555553 47789999999999999999999999999998


Q ss_pred             HHHH
Q psy1416         141 NLVL  144 (177)
Q Consensus       141 ~~~~  144 (177)
                      +.+.
T Consensus       163 ~~~~  166 (258)
T 3a1s_A          163 EYAQ  166 (258)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.87  E-value=2.7e-09  Score=84.28  Aligned_cols=80  Identities=11%  Similarity=0.029  Sum_probs=64.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMF  136 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f  136 (177)
                      +.|.++..++.... |+..+..     .++|++||+||+|+...+....+....+++.++  .+++++||++|.||+++|
T Consensus        99 VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~  173 (308)
T 3iev_A           99 MIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELV  173 (308)
T ss_dssp             EEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHH
T ss_pred             EEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHH
Confidence            36677777777776 7776642     368999999999997445566777888888876  789999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         137 MAITNLVL  144 (177)
Q Consensus       137 ~~~~~~~~  144 (177)
                      ..+++.+.
T Consensus       174 ~~l~~~l~  181 (308)
T 3iev_A          174 KTILKYLP  181 (308)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhCc
Confidence            99988764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.85  E-value=1.1e-09  Score=87.88  Aligned_cols=82  Identities=17%  Similarity=0.156  Sum_probs=63.7

Q ss_pred             ccccch---hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHH
Q psy1416          60 VCTVLN---ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~---~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~  133 (177)
                      +.|+++   +.+|..+. |+.++........+.|++||+||+|+...+    +....+++.+.  .+++++||+++.||+
T Consensus       243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~  318 (342)
T 1lnz_A          243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLR  318 (342)
T ss_dssp             EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred             EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHH
Confidence            478888   78898887 887774322212478999999999997432    45667777776  689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLR  145 (177)
Q Consensus       134 ~~f~~~~~~~~~  145 (177)
                      ++|..+++.+.+
T Consensus       319 eL~~~l~~~l~~  330 (342)
T 1lnz_A          319 ELLFEVANQLEN  330 (342)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh
Confidence            999999987743

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.84  E-value=5.7e-10  Score=89.29  Aligned_cols=85  Identities=16%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             ccccc----------hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---------------cCHHHHHHH
Q psy1416          60 VCTVL----------NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---------------VLTEDAQRF  113 (177)
Q Consensus        60 ~~dit----------~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---------------v~~~~~~~~  113 (177)
                      +.|++          +..+|.... |+..+. ......++|++|||||+||..++.               ...+++..|
T Consensus       191 V~diS~ydq~l~e~~~~nr~~es~~~~~~i~-~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~  269 (340)
T 4fid_A          191 VTSLAEYDMKLYEDGNTSRLTESIAVFKDIM-TNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQY  269 (340)
T ss_dssp             EEEGGGTTCBCC--CCSBHHHHHHHHHHHHH-HCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHH
T ss_pred             EEECCccccccccccccchHHHHHHHHHHHh-hhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHH
Confidence            47888          678887775 776653 222335899999999999954221               356777766


Q ss_pred             HHHc---------------------------CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416         114 ANQM---------------------------GIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       114 a~~~---------------------------~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +...                           .+.+++|||+++.||+.+|..+.+.|++
T Consensus       270 i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          270 IQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            5442                           2668899999999999999999999987

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.83  E-value=3.6e-09  Score=79.17  Aligned_cols=81  Identities=11%  Similarity=-0.111  Sum_probs=59.1

Q ss_pred             chhhhhcccc-hhhhhhhhhccCCCCcE----------EEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCC
Q psy1416          64 LNECAWLGCG-WMTICPIIYCWLFPSGL----------RLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNI  130 (177)
Q Consensus        64 t~~~Sf~~~~-w~~~~~~~~~~~~~~~~----------ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~  130 (177)
                      ..+.||.... |...+..... ....|+          +||+||+|+...+.+..+++..++..+  +++++++||++|.
T Consensus       131 ~~~~s~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  209 (226)
T 2hf9_A          131 ICPADFDLGTHKRIVVISTTE-GDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTME  209 (226)
T ss_dssp             SGGGGCCCSCSEEEEEEEGGG-CTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCT
T ss_pred             cCcchhhhccCcEEEEEecCc-chhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence            3456777665 7654422111 123444          999999999765556778888888765  5789999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy1416         131 NVEEMFMAITNLVLR  145 (177)
Q Consensus       131 ~v~~~f~~~~~~~~~  145 (177)
                      ||+++|..+.+.+..
T Consensus       210 gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          210 GFDKVLEFIEKSVKE  224 (226)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999887653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.82  E-value=3.6e-09  Score=87.80  Aligned_cols=61  Identities=15%  Similarity=0.050  Sum_probs=53.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .+.|++||+||+||...+.++.+++.+++++.     +++|+++||++|.||+++|..+++.+.+.
T Consensus       305 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          305 AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            36899999999999887888888888888776     57999999999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.78  E-value=6.1e-09  Score=85.95  Aligned_cols=81  Identities=11%  Similarity=-0.068  Sum_probs=60.2

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH-HHH----cCCcEEEecCCCCCCHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQ----MGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~-a~~----~~~~~~e~Sak~~~~v~~~  135 (177)
                      .|+++..++....|+..+..     .+.|++||+||+||...+.++.++.... .+.    .+++|+++||++|.||+++
T Consensus       265 ~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l  339 (436)
T 2hjg_A          265 LDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL  339 (436)
T ss_dssp             EETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred             EcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHH
Confidence            56677777777667655521     3689999999999987666554444332 232    3679999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         136 FMAITNLVLRS  146 (177)
Q Consensus       136 f~~~~~~~~~~  146 (177)
                      |..+.+.+.+.
T Consensus       340 ~~~i~~~~~~~  350 (436)
T 2hjg_A          340 MPAIIKASENH  350 (436)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999877653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.74  E-value=1.4e-09  Score=83.74  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|.++.+++..+. |+.+.        ++|++||+||+|+...+.+.. ....+++.++++++++||++|.||+++|..
T Consensus        90 VvDas~~~~~~~l~~~l~~~--------~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~  160 (256)
T 3iby_A           90 VIDACHLERHLYLTSQLFEL--------GKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQS  160 (256)
T ss_dssp             EEEGGGHHHHHHHHHHHTTS--------CSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHH
T ss_pred             EeeCCCchhHHHHHHHHHHc--------CCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence            46777777766554 54332        689999999999975443322 245588889999999999999999999999


Q ss_pred             HHHH
Q psy1416         139 ITNL  142 (177)
Q Consensus       139 ~~~~  142 (177)
                      +.+.
T Consensus       161 i~~~  164 (256)
T 3iby_A          161 LLHC  164 (256)
T ss_dssp             HHTC
T ss_pred             HHhh
Confidence            8764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.69  E-value=2.2e-09  Score=79.80  Aligned_cols=73  Identities=11%  Similarity=-0.048  Sum_probs=49.2

Q ss_pred             ccccc-hhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccC------HHHHHHHHHHcCCcEEEecCCCC
Q psy1416          60 VCTVL-NECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVL------TEDAQRFANQMGIQLFETSAKDN  129 (177)
Q Consensus        60 ~~dit-~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~------~~~~~~~a~~~~~~~~e~Sak~~  129 (177)
                      +.|++ ++.+|..+. |+..+.....  ...++|++||+||+||...+.+.      .+++..++...++.|+++||++|
T Consensus        89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~  168 (218)
T 1nrj_B           89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN  168 (218)
T ss_dssp             EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            47788 889999887 8876632221  23579999999999998776655      56678888888889999999998


Q ss_pred             CCH
Q psy1416         130 INV  132 (177)
Q Consensus       130 ~~v  132 (177)
                      .+.
T Consensus       169 ~~~  171 (218)
T 1nrj_B          169 EED  171 (218)
T ss_dssp             ---
T ss_pred             ccc
Confidence            763

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.67  E-value=6.5e-09  Score=78.14  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=25.5

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      +|+.|+|||||+|.||+++|..|++.|+...
T Consensus       148 ~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          148 LNVMFIETSAKAGYNVKQLFRRVAAALPGME  178 (216)
T ss_dssp             HTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred             hCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence            3789999999999999999999999987643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.67  E-value=1.5e-08  Score=75.40  Aligned_cols=60  Identities=10%  Similarity=0.065  Sum_probs=43.2

Q ss_pred             CCcEEEEeeCCCCcCCCccC--HHHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQ-------MGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +.|++||+||+|+...+.+.  .++.......       .+.+++++||++|.||+++|..+.+.+...
T Consensus       144 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          144 GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            68999999999997543321  1222222222       457899999999999999999999887654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.64  E-value=2.3e-09  Score=83.31  Aligned_cols=76  Identities=13%  Similarity=0.036  Sum_probs=55.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|.++.+++..+. |+.+.        ++|+++|+||+|+...+.+.. +...+++.++++++++||++|.||+++|..
T Consensus        92 VvD~~~~~~~~~~~~~l~~~--------~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~  162 (274)
T 3i8s_A           92 VVDASNLERNLYLTLQLLEL--------GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLA  162 (274)
T ss_dssp             EEEGGGHHHHHHHHHHHHHH--------TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHH
T ss_pred             EecCCChHHHHHHHHHHHhc--------CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence            36666665554433 43222        689999999999975443322 346788889999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +.+.+.
T Consensus       163 i~~~~~  168 (274)
T 3i8s_A          163 IDRYKA  168 (274)
T ss_dssp             HHTCCC
T ss_pred             HHHHHh
Confidence            887553

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.60  E-value=4.8e-08  Score=81.52  Aligned_cols=75  Identities=15%  Similarity=0.049  Sum_probs=56.3

Q ss_pred             ccccchhhhhcccc----hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG----WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~----w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|+++..++..+.    |+..+       .+.|+++|+||+||...+.+   +...+++....+++++||++|.||+++
T Consensus       319 VvD~s~~~s~~~~~~~~~~l~~l-------~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          319 LLDLGTERLDDELTEIRELKAAH-------PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTL  388 (476)
T ss_dssp             EEETTTCSSGGGHHHHHHHHHHC-------TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             EEECCCCcchhhhHHHHHHHHhc-------CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHH
Confidence            47888888886443    44333       26899999999999876543   223455543478999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         136 FMAITNLVL  144 (177)
Q Consensus       136 f~~~~~~~~  144 (177)
                      |..+.+.+.
T Consensus       389 ~~~i~~~~~  397 (476)
T 3gee_A          389 KQHMGDLVK  397 (476)
T ss_dssp             HHHHTHHHH
T ss_pred             HHHHHHHHh
Confidence            999998775

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.58  E-value=6.2e-09  Score=84.02  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=54.4

Q ss_pred             cccccch-hhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH--HHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416          59 KVCTVLN-ECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT--EDAQRFANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        59 ~~~dit~-~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~~~~~~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.++|++ ..+|..+.  |+..+      ...+|+|+|+||+|+...+.+..  +++..++..++++||++||++|.+ +
T Consensus       149 ~vy~I~~~~~~l~~~d~~~~~~l------~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~  221 (361)
T 2qag_A          149 CFYFISPFGHGLKPLDVAFMKAI------HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-D  221 (361)
T ss_dssp             EEEEECSSSSSCCHHHHHHHHHT------CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred             EEEEEecCCCCcchhHHHHHHHh------ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence            5677776 66777664  65444      14789999999999987666554  577788888899999999999999 9


Q ss_pred             HHHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRSK  147 (177)
Q Consensus       134 ~~f~~~~~~~~~~~  147 (177)
                      +.|..+++.+.+..
T Consensus       222 e~~~~l~~~i~~~i  235 (361)
T 2qag_A          222 EDFKEQTRLLKASI  235 (361)
T ss_dssp             --CHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHhcC
Confidence            99999998887643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.58  E-value=9.6e-09  Score=84.53  Aligned_cols=65  Identities=14%  Similarity=0.107  Sum_probs=53.4

Q ss_pred             hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      |+..+...     ++|+++|+||+|+...+..  +.+..+++.++++|+++||++|.||+++|..+++.+.+
T Consensus       132 ~l~~l~~~-----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          132 VVNLFKEM-----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             HHHHHHHT-----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             HHHHHHhc-----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            66555321     6899999999999876654  66777788889999999999999999999999988743

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.57  E-value=7.2e-08  Score=80.57  Aligned_cols=75  Identities=13%  Similarity=-0.022  Sum_probs=53.6

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  140 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~  140 (177)
                      .|+++..++....+++.+       .+.|+++|+||+||...  +..++...++. ++.+++++||++|.||+++|..+.
T Consensus       331 vD~s~~~s~~~~~il~~l-------~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~  400 (482)
T 1xzp_A          331 LDASSPLDEEDRKILERI-------KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIY  400 (482)
T ss_dssp             EETTSCCCHHHHHHHHHH-------TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHh-------cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHH
Confidence            555666555544322221       36799999999999753  45555555543 447899999999999999999999


Q ss_pred             HHHHH
Q psy1416         141 NLVLR  145 (177)
Q Consensus       141 ~~~~~  145 (177)
                      +.+..
T Consensus       401 ~~~~~  405 (482)
T 1xzp_A          401 RETQE  405 (482)
T ss_dssp             HHTHH
T ss_pred             HHHhh
Confidence            87664

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.51  E-value=2.3e-08  Score=77.31  Aligned_cols=57  Identities=26%  Similarity=0.285  Sum_probs=48.2

Q ss_pred             CcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      .|+++|+||+|+...+.+... ...+++.++++++++||++|.||+++|..+.+.+..
T Consensus       110 ~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          110 KNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             CSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            899999999998754444432 677889999999999999999999999999887643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.40  E-value=1.6e-07  Score=69.80  Aligned_cols=60  Identities=15%  Similarity=0.021  Sum_probs=47.6

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ..|+++|+||+|+...+.+..++...++...  +.+++++||++|.|++++|..+.+.+...
T Consensus       154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            4688999999999754445677777777765  46899999999999999999999877543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.40  E-value=3e-07  Score=75.81  Aligned_cols=61  Identities=20%  Similarity=0.059  Sum_probs=46.7

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHH-HHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQR-FANQ----MGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .+.|++||+||+||...+.++.++... +++.    .+++++++||++|.||+++|..+.+.+...
T Consensus       291 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          291 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            368999999999998766555554432 2233    357899999999999999999999876543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.37  E-value=8.7e-07  Score=71.61  Aligned_cols=75  Identities=24%  Similarity=0.333  Sum_probs=52.6

Q ss_pred             ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCH
Q psy1416          60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINV  132 (177)
Q Consensus        60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v  132 (177)
                      ..|+++..    ..|...+...   ..+.|++||+||+||... .+..++..+|    ++..|.   .++++||++|.||
T Consensus        76 VvD~~d~~----~~~~~~l~~~---~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi  147 (368)
T 3h2y_A           76 IVDIFDFN----GSWLPGLHRF---VGNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGI  147 (368)
T ss_dssp             EEETTSHH----HHCCTTHHHH---SSSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTH
T ss_pred             EEECCCCc----ccHHHHHHHH---hCCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCH
Confidence            36666543    1276665322   236899999999999753 3444444444    566777   7999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         133 EEMFMAITNL  142 (177)
Q Consensus       133 ~~~f~~~~~~  142 (177)
                      ++++..+.+.
T Consensus       148 ~~L~~~l~~~  157 (368)
T 3h2y_A          148 AELADAIEYY  157 (368)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhhhhhh
Confidence            9999888654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.36  E-value=1.5e-07  Score=78.24  Aligned_cols=74  Identities=18%  Similarity=0.056  Sum_probs=51.2

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT  140 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~  140 (177)
                      .|.++..++....|+..+.       ..|+++|+||+||...+.+.  ....++  .+.+++++||++|.||+++|..+.
T Consensus       311 vD~s~~~~~~~~~i~~~l~-------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~  379 (462)
T 3geh_A          311 IDAATGWTTGDQEIYEQVK-------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAIL  379 (462)
T ss_dssp             EETTTCSCHHHHHHHHHHT-------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             eccCCCCCHHHHHHHHhcc-------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHH
Confidence            5556655554433554442       36999999999997655443  111111  356899999999999999999999


Q ss_pred             HHHHH
Q psy1416         141 NLVLR  145 (177)
Q Consensus       141 ~~~~~  145 (177)
                      +.+..
T Consensus       380 ~~~~~  384 (462)
T 3geh_A          380 EIVQT  384 (462)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            87653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.34  E-value=1e-07  Score=75.05  Aligned_cols=60  Identities=18%  Similarity=0.145  Sum_probs=42.2

Q ss_pred             CCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      ..+|+++|+||.|+...+.+  ..+++.++++.+++.||++||++| +|+++|..+++.+.+.
T Consensus       154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            36789999999999765433  356888999999999999999999 9999999999888643

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.24  E-value=8.2e-07  Score=74.18  Aligned_cols=58  Identities=16%  Similarity=0.100  Sum_probs=44.8

Q ss_pred             CCcEEEEeeCCCCcCCC--ccCHHHHHHHHHHc----CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKK--VVLTEDAQRFANQM----GIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~~~----~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ++|+++|+||+|+.+..  ....++...++...    +.+++++||++|.||+++|..|.+.+.
T Consensus       125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            57889999999997532  11234555666655    578999999999999999999988764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.23  E-value=1.2e-06  Score=71.61  Aligned_cols=57  Identities=21%  Similarity=0.270  Sum_probs=38.8

Q ss_pred             CcEEEEeeCCCCcCCCc--cCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKV--VLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .|+++|+||+||.+...  ...++...++..   .+++++++||++|.||+++|..+.+.+.
T Consensus       136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            47999999999976432  235666777765   3578999999999999999999887553

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.20  E-value=2e-06  Score=73.58  Aligned_cols=76  Identities=17%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC---cEEEecCCCCCCHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI---QLFETSAKDNINVEEMF  136 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~---~~~e~Sak~~~~v~~~f  136 (177)
                      .|.++..++.... |.....      .++|+++|+||+|+...+  ..+...+++..++.   .++++||++|.||+++|
T Consensus       102 VDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll  173 (599)
T 3cb4_D          102 VDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVL  173 (599)
T ss_dssp             EETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHH
Confidence            5666666666655 643331      368999999999997643  23345567777776   49999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         137 MAITNLVL  144 (177)
Q Consensus       137 ~~~~~~~~  144 (177)
                      ..+++.+.
T Consensus       174 ~~I~~~lp  181 (599)
T 3cb4_D          174 ERLVRDIP  181 (599)
T ss_dssp             HHHHHHSC
T ss_pred             HHHhhcCC
Confidence            99887664

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.19  E-value=8.8e-07  Score=72.70  Aligned_cols=83  Identities=12%  Similarity=-0.026  Sum_probs=58.8

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|++ ..++..+. |..++..........|.+||+||+|+...  ...++...++...+..++.+||+++.+|+++|..+
T Consensus       243 vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i  319 (416)
T 1udx_A          243 LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEAL  319 (416)
T ss_dssp             EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence            5565 56777776 76554322111124688999999999753  23344555566668899999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         140 TNLVLRS  146 (177)
Q Consensus       140 ~~~~~~~  146 (177)
                      ++.+.+.
T Consensus       320 ~~~l~~~  326 (416)
T 1udx_A          320 HALVRST  326 (416)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhc
Confidence            9988654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.19  E-value=3.3e-07  Score=72.08  Aligned_cols=75  Identities=17%  Similarity=0.074  Sum_probs=48.9

Q ss_pred             cccchhhhhcccchh-hhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHH
Q psy1416          61 CTVLNECAWLGCGWM-TICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~-~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~  137 (177)
                      .|.++..+... .|+ ..+.. .  .++.|++||+||+|+...+.    +....++.+  ...++++||++|.||+++|.
T Consensus        94 vD~~~~~~~~~-~~i~~~l~~-~--~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~  165 (301)
T 1wf3_A           94 VDLRHPPTPED-ELVARALKP-L--VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKA  165 (301)
T ss_dssp             EETTSCCCHHH-HHHHHHHGG-G--TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHH
T ss_pred             EECCCCCChHH-HHHHHHHHh-h--cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHH
Confidence            56665533332 254 33321 1  24689999999999975432    022333333  24689999999999999999


Q ss_pred             HHHHHH
Q psy1416         138 AITNLV  143 (177)
Q Consensus       138 ~~~~~~  143 (177)
                      .+.+.+
T Consensus       166 ~l~~~l  171 (301)
T 1wf3_A          166 DLLALM  171 (301)
T ss_dssp             HHHTTC
T ss_pred             HHHHhc
Confidence            998755

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.15  E-value=1.2e-06  Score=72.16  Aligned_cols=55  Identities=22%  Similarity=0.351  Sum_probs=42.5

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHH-HHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDA-QRFANQMGI-QLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~-~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +.|++||+||+|+...  + ..++ .++. .+++ .++++||++|.||+++|..+++.+.+
T Consensus       110 ~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          110 TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            6799999999998632  1 1233 4444 4566 79999999999999999999988764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.15  E-value=4.7e-06  Score=67.29  Aligned_cols=74  Identities=22%  Similarity=0.304  Sum_probs=50.6

Q ss_pred             cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCHH
Q psy1416          61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINVE  133 (177)
Q Consensus        61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v~  133 (177)
                      .|+++..+    .|+.++...   ..+.|++||+||+||... .+..+...+|    ++..|.   .++.+||++|.|++
T Consensus        79 vD~~d~~~----s~~~~l~~~---l~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~  150 (369)
T 3ec1_A           79 VDIFDFNG----SFIPGLPRF---AADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMA  150 (369)
T ss_dssp             EETTCSGG----GCCSSHHHH---CTTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHH
T ss_pred             EECCCCCC----chhhHHHHH---hCCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHH
Confidence            55555442    366555322   136799999999999753 3334444444    555676   68999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         134 EMFMAITNL  142 (177)
Q Consensus       134 ~~f~~~~~~  142 (177)
                      +++..+.+.
T Consensus       151 ~L~~~I~~~  159 (369)
T 3ec1_A          151 KVMEAINRY  159 (369)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999888654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.13  E-value=3.9e-07  Score=74.86  Aligned_cols=78  Identities=9%  Similarity=0.066  Sum_probs=45.5

Q ss_pred             ccccchh-hhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH--HHHHHHHHHcCCcEEEecCCCCCCHHH
Q psy1416          60 VCTVLNE-CAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT--EDAQRFANQMGIQLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~-~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~~~~~~a~~~~~~~~e~Sak~~~~v~~  134 (177)
                      ..+++.. .+|..+.  |+..+.      ..+|+|+|+||+|+...+.+..  +++..++..++++||++||+++.++++
T Consensus       143 L~ldePt~~~L~~~d~~~lk~L~------~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~  216 (418)
T 2qag_C          143 LYFIAPSGHGLKPLDIEFMKRLH------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENK  216 (418)
T ss_dssp             EEECCC-CCSCCHHHHHHHHHHT------TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC---------
T ss_pred             EEEecCcccCCCHHHHHHHHHHh------ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHH
Confidence            4555544 4677664  776552      2689999999999976666654  678888899999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         135 MFMAITNLV  143 (177)
Q Consensus       135 ~f~~~~~~~  143 (177)
                      +|..+...+
T Consensus       217 ~~~~l~~~i  225 (418)
T 2qag_C          217 LVKKIKDRL  225 (418)
T ss_dssp             --------C
T ss_pred             HHHHHHhhC
Confidence            988887654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.11  E-value=3e-06  Score=72.51  Aligned_cols=76  Identities=20%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC---cEEEecCCCCCCHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI---QLFETSAKDNINVEEMF  136 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~---~~~e~Sak~~~~v~~~f  136 (177)
                      .|.++..++.... |.....      .++|+++|+||+|+...+  ..+...+++..++.   .++++||++|.||+++|
T Consensus       104 VDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Ll  175 (600)
T 2ywe_A          104 IDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEIL  175 (600)
T ss_dssp             EETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHH
T ss_pred             EECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHH
Confidence            5556665565555 543221      378999999999997643  22334556666676   49999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         137 MAITNLVL  144 (177)
Q Consensus       137 ~~~~~~~~  144 (177)
                      ..+++.+.
T Consensus       176 e~I~~~lp  183 (600)
T 2ywe_A          176 EAIVNRIP  183 (600)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhcc
Confidence            99987664

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.08  E-value=3.4e-06  Score=68.01  Aligned_cols=84  Identities=13%  Similarity=-0.007  Sum_probs=53.3

Q ss_pred             cccchhh--hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCcc-CHHHHHHHHHHc---CCcEEEecCCCCCCHH
Q psy1416          61 CTVLNEC--AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV-LTEDAQRFANQM---GIQLFETSAKDNINVE  133 (177)
Q Consensus        61 ~dit~~~--Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v-~~~~~~~~a~~~---~~~~~e~Sak~~~~v~  133 (177)
                      .|+++..  ++..+. |...+...  ...+.|+++|+||+|+.+.... ..+.+..++..+   +..++++||++|.|++
T Consensus       265 vD~s~~~~~~~~~~~~~~~~L~~l--~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~  342 (364)
T 2qtf_A          265 IDSTFSENLLIETLQSSFEILREI--GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE  342 (364)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHH--TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHH
T ss_pred             EECCCCcchHHHHHHHHHHHHHHh--CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHH
Confidence            4555554  444443 44333211  1246899999999999754310 012343455555   2368999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      ++|..+.+.+...
T Consensus       343 ~L~~~I~~~l~~~  355 (364)
T 2qtf_A          343 LLRDKIYQLATQL  355 (364)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc
Confidence            9999998877654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.00  E-value=5.4e-06  Score=65.05  Aligned_cols=57  Identities=26%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      +.|++||+||+|+...+....+....+++.++. .++.+||++|.|++++|..+.+.+
T Consensus       116 ~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          116 KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            689999999999976333334555666666675 699999999999999999988643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.99  E-value=3.1e-06  Score=69.13  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             CcEEEEeeCCCCcCCCc--cCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKV--VLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .|+++|+||+|+.+...  ...++...++..   .+++++++||++|.||+++|..|.+.+.
T Consensus       138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          138 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            47999999999975322  223455555554   3578999999999999999999886553

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.98  E-value=3.7e-06  Score=68.59  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHHc---CCcEEEecCCCCCCHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQM---GIQLFETSAKDNINVEE  134 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~  134 (177)
                      .|.++..++.... |+..+.. .   ...|+++|+||+||.+....  ..++...+....   +++++++||++|.||++
T Consensus       106 vda~~~~~~~qt~~~~~~~~~-~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~  181 (403)
T 3sjy_A          106 VAANEPFPQPQTREHFVALGI-I---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDS  181 (403)
T ss_dssp             EETTSCSSCHHHHHHHHHHHH-H---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH
T ss_pred             EECCCCCCcHHHHHHHHHHHH-c---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHH
Confidence            4555554455544 6544421 1   12489999999999753221  112223333222   56899999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         135 MFMAITNLVL  144 (177)
Q Consensus       135 ~f~~~~~~~~  144 (177)
                      +|..+.+.+.
T Consensus       182 L~~~l~~~l~  191 (403)
T 3sjy_A          182 LIEGIEEYIK  191 (403)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHhCC
Confidence            9999887653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.97  E-value=4.1e-06  Score=69.91  Aligned_cols=75  Identities=13%  Similarity=0.015  Sum_probs=41.3

Q ss_pred             cccchhhhhcccc---hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH----HHHHc-----CCcEEEecCCC
Q psy1416          61 CTVLNECAWLGCG---WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR----FANQM-----GIQLFETSAKD  128 (177)
Q Consensus        61 ~dit~~~Sf~~~~---w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~----~a~~~-----~~~~~e~Sak~  128 (177)
                      .|.++..++..+.   |..+...........|+|||+||+||.+.+....++...    +....     +++|+++||++
T Consensus       142 vDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~  221 (483)
T 3p26_A          142 VDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFS  221 (483)
T ss_dssp             EECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSS
T ss_pred             EECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeec
Confidence            6667665555432   322221111111234699999999998754444443333    33333     35799999999


Q ss_pred             CCCHHHH
Q psy1416         129 NINVEEM  135 (177)
Q Consensus       129 ~~~v~~~  135 (177)
                      |.||+++
T Consensus       222 g~gi~el  228 (483)
T 3p26_A          222 GEGVYKI  228 (483)
T ss_dssp             CTTSSSS
T ss_pred             CCCcccc
Confidence            9999864

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.93  E-value=2.5e-05  Score=66.80  Aligned_cols=77  Identities=12%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             cccch---hhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC-------------H-------H---HHHHHH
Q psy1416          61 CTVLN---ECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL-------------T-------E---DAQRFA  114 (177)
Q Consensus        61 ~dit~---~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~-------------~-------~---~~~~~a  114 (177)
                      .|.++   ++|+..+.++..        .++|+++|+||+|+.......             .       +   +.....
T Consensus       101 vDa~~Gv~~qT~e~l~~l~~--------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L  172 (594)
T 1g7s_A          101 VDINEGFKPQTQEALNILRM--------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL  172 (594)
T ss_dssp             EETTTCCCHHHHHHHHHHHH--------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCccHhHHHHHHHHHH--------cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            67777   778776654321        368999999999996421100             0       0   111111


Q ss_pred             HHcC---------------CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416         115 NQMG---------------IQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       115 ~~~~---------------~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      .+.+               .+++.+||++|.||++++..+...+..
T Consensus       173 ~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          173 HEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence            1222               379999999999999999998876653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.92  E-value=2e-06  Score=70.87  Aligned_cols=53  Identities=15%  Similarity=0.292  Sum_probs=38.3

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|++||+||+|+...+.    ++.++. ..++ .++++||++|.||+++|..+++.+.
T Consensus       111 ~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          111 KKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             CSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            689999999999975321    111222 3454 7999999999999999999987764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.80  E-value=3.3e-05  Score=56.22  Aligned_cols=31  Identities=45%  Similarity=0.647  Sum_probs=27.9

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK   32 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~   32 (177)
                      +++|++|||++|.||+++|..|++.+++...
T Consensus       148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          148 NIPYFETSAKEAINVEQAFQTIARNALKQET  178 (207)
T ss_dssp             SCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            5789999999999999999999999987654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.75  E-value=4.2e-06  Score=68.96  Aligned_cols=76  Identities=11%  Similarity=0.025  Sum_probs=51.4

Q ss_pred             cccchhhhhcccc-hhhhhhhhhc--cCCC-CcEEEEeeCCCCcCC--C----ccCHHHHHHHHHHcC-----CcEEEec
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYC--WLFP-SGLRLVGNKNDDPQK--K----VVLTEDAQRFANQMG-----IQLFETS  125 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~--~~~~-~~~ilvgnK~Dl~~~--~----~v~~~~~~~~a~~~~-----~~~~e~S  125 (177)
                      .|.++ .||+++. |..+......  ...+ .|++||+||+||.+.  .    ....++...++..++     ++|+++|
T Consensus       115 vDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iS  193 (435)
T 1jny_A          115 VSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVV  193 (435)
T ss_dssp             EECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECB
T ss_pred             EECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEee
Confidence            67777 8888775 7654321111  0113 368999999999752  1    122456777777776     6799999


Q ss_pred             CCCCCCHHHHHH
Q psy1416         126 AKDNINVEEMFM  137 (177)
Q Consensus       126 ak~~~~v~~~f~  137 (177)
                      |++|.||.++|.
T Consensus       194 A~~g~~v~e~~~  205 (435)
T 1jny_A          194 APSGDNITHKSE  205 (435)
T ss_dssp             TTTTBTTTBCCS
T ss_pred             cccCcccccccc
Confidence            999999987764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.75  E-value=1.7e-05  Score=58.14  Aligned_cols=58  Identities=9%  Similarity=0.037  Sum_probs=43.9

Q ss_pred             CCcEEEEeeCCCCcCC--CccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQK--KVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~--~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+|+++|+||+|+...  ++...+.+..++.+.+  +.++++||+++.+++++|..+.+.+.
T Consensus       137 ~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          137 NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            6889999999998642  2222355666666654  56889999999999999998877653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.75  E-value=3.4e-05  Score=58.57  Aligned_cols=56  Identities=14%  Similarity=0.030  Sum_probs=40.3

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHH----------------------------HHHHcC--CcEEEecCCCCCCHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQR----------------------------FANQMG--IQLFETSAKDNINVEEMF  136 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~----------------------------~a~~~~--~~~~e~Sak~~~~v~~~f  136 (177)
                      +.|+++|+||+|+...+.+  ++...                            ++++++  .+++++||++|.||+++|
T Consensus       171 ~~p~~iv~NK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~  248 (262)
T 1yrb_A          171 GATTIPALNKVDLLSEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLE  248 (262)
T ss_dssp             TSCEEEEECCGGGCCHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHH
T ss_pred             CCCeEEEEecccccccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHH
Confidence            6789999999999754321  11111                            124443  479999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         137 MAITNLVL  144 (177)
Q Consensus       137 ~~~~~~~~  144 (177)
                      ..+.+.+.
T Consensus       249 ~~i~~~~~  256 (262)
T 1yrb_A          249 TLAYEHYC  256 (262)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887664

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.72  E-value=8.2e-06  Score=67.83  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=49.5

Q ss_pred             cccchh---hhhcccc-hhhhhhhhhccCCCCc-EEEEeeCCCCcCCC------ccCHHHHHHHHHHc-C------CcEE
Q psy1416          61 CTVLNE---CAWLGCG-WMTICPIIYCWLFPSG-LRLVGNKNDDPQKK------VVLTEDAQRFANQM-G------IQLF  122 (177)
Q Consensus        61 ~dit~~---~Sf~~~~-w~~~~~~~~~~~~~~~-~ilvgnK~Dl~~~~------~v~~~~~~~~a~~~-~------~~~~  122 (177)
                      .|.++.   .||.... |...+.....  .++| +|||+||+||....      ....++...++... +      ++|+
T Consensus       152 vDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i  229 (467)
T 1r5b_A          152 ISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYM  229 (467)
T ss_dssp             EECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEE
T ss_pred             EeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEE
Confidence            566664   6787664 6654422221  3576 99999999995311      11234566777766 3      5699


Q ss_pred             EecCCCCCCHHHHH
Q psy1416         123 ETSAKDNINVEEMF  136 (177)
Q Consensus       123 e~Sak~~~~v~~~f  136 (177)
                      ++||++|.||+++|
T Consensus       230 ~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          230 PVSAYTGQNVKDRV  243 (467)
T ss_dssp             ECBTTTTBTTSSCC
T ss_pred             eccccccccccccc
Confidence            99999999999877

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.68  E-value=7.3e-06  Score=69.27  Aligned_cols=56  Identities=20%  Similarity=0.166  Sum_probs=39.1

Q ss_pred             CCcEEEEeeCCCCcCCCc--cCHHHHHHH---HHHc--CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKV--VLTEDAQRF---ANQM--GIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~--v~~~~~~~~---a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ++|++||+||+|+.+.+.  +.. +...+   +..+  .++|+++||++|.||+++|..+...+
T Consensus       104 ~vPiIVViNKiDl~~~~~~~v~~-~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          104 HVPIVLAINKCDKAEADPEKVKK-ELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             TCCEEECCBSGGGTTTSCCSSSS-HHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             CCcEEEEEecccccccchHHHHH-HHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            689999999999974321  111 11111   1222  24799999999999999999988655

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.67  E-value=6.7e-05  Score=54.72  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=28.9

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE   33 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~   33 (177)
                      ++++|+||||++|.||+++|..|++.+.+....
T Consensus       143 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  175 (206)
T 2bcg_Y          143 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQ  175 (206)
T ss_dssp             TTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCH
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            367899999999999999999999999876443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.66  E-value=2.9e-05  Score=62.18  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=40.8

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----------MGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ..|++||.||+|+....... .....+...          ++.+++.+||++|.||+++|..+.+.+..
T Consensus       217 ~~p~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          217 ELADIVVVNKADGEHHKEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGCSEEEEECCCGGGHHHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCcChhHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            35899999999996432211 111222221          25789999999999999999999887754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.64  E-value=3.7e-06  Score=65.26  Aligned_cols=58  Identities=16%  Similarity=-0.048  Sum_probs=39.6

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHH--cC-CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ--MG-IQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~--~~-~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .+.|+++|+||+|+...+....+........  .+ .+++++||++|.||+++|..+.+..
T Consensus       191 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          191 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            3689999999999976544323222210001  12 3578999999999999999988743

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.61  E-value=6.2e-05  Score=58.54  Aligned_cols=58  Identities=14%  Similarity=0.193  Sum_probs=42.8

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +.|++||.||+||.+...  .+....+.++.+.+++.+||+++.|+++++..+.+.+...
T Consensus        50 ~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           50 NKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            678999999999975211  1222334445578999999999999999998887766543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.59  E-value=4.1e-06  Score=70.23  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             CCCcEEEEeeCCCCcCC--CccCHH--HHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQK--KVVLTE--DAQRFANQMG--IQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~--~~v~~~--~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      .++|+++|+||+|+...  ..+..+  +...+++.++  ++|+++||++|.||+++|..++.
T Consensus       102 ~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          102 AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            36899999999999642  111111  0011223333  68999999999999999998874

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.58  E-value=1.9e-05  Score=64.22  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=41.6

Q ss_pred             CCc-EEEEeeCCCCcCCCc---cCHHHHHHHHHHcC-----CcEEEecCCCCCC----------HHHHHHHHHHHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKV---VLTEDAQRFANQMG-----IQLFETSAKDNIN----------VEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~e~Sak~~~~----------v~~~f~~~~~~~  143 (177)
                      ++| +++|+||+|+.+...   ...++..++++.++     ++|+++||++|.|          |+++|..+.+.+
T Consensus       118 ~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          118 GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            577 789999999974221   12346677777776     5899999999775          788887776544

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.53  E-value=5.4e-05  Score=61.10  Aligned_cols=59  Identities=7%  Similarity=-0.008  Sum_probs=43.4

Q ss_pred             CCcE-EEEee-CCCCcCCCccCH--HHHHHHHHHcC---CcEEE--ecCCC---CCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGL-RLVGN-KNDDPQKKVVLT--EDAQRFANQMG---IQLFE--TSAKD---NINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~-ilvgn-K~Dl~~~~~v~~--~~~~~~a~~~~---~~~~e--~Sak~---~~~v~~~f~~~~~~~~~~  146 (177)
                      ++|. ++|.| |+|+ +.+.+..  ++...++...+   +++++  +||++   +.||+++|..+.+.+...
T Consensus       111 ~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          111 GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence            4666 88888 9999 5332222  45555655543   68999  99999   999999999998876543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.49  E-value=0.00013  Score=61.66  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.3

Q ss_pred             cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         120 QLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       120 ~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ++|.+||++|.||+++|..+++.+.
T Consensus       252 PV~~gSA~~~~GV~~Lld~i~~~~p  276 (528)
T 3tr5_A          252 PIFFGSAINNFGVGELLDAFVKEAP  276 (528)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred             EEEeccccCCccHHHHHHHHHHhCC
Confidence            6889999999999999999987764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.47  E-value=7.7e-05  Score=56.06  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=42.1

Q ss_pred             CCcEEEEeeCCCCcCCCccC------HHHHHHHHHHcCCcEEEecCCCC-----CCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVL------TEDAQRFANQMGIQLFETSAKDN-----INVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~------~~~~~~~a~~~~~~~~e~Sak~~-----~~v~~~f~~~~~~~~~  145 (177)
                      ..|++||+||+|+...+.+.      .+....+++..+..|+..+++.+     .+|.++|..+.+.+.+
T Consensus       145 ~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          145 RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             GGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            35899999999987554443      24678888899988888887754     6888888887776643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.46  E-value=2.5e-05  Score=63.62  Aligned_cols=45  Identities=16%  Similarity=0.130  Sum_probs=33.3

Q ss_pred             CCc-EEEEeeCCCCcCCCc---cCHHHHHHHHHHcC-----CcEEEecCCCCCC
Q psy1416          87 PSG-LRLVGNKNDDPQKKV---VLTEDAQRFANQMG-----IQLFETSAKDNIN  131 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~e~Sak~~~~  131 (177)
                      ++| +++|+||+|+.....   ...++...++..++     .+++++||++|.|
T Consensus       127 ~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          127 GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            577 899999999974321   11235666777765     5799999999987

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.45  E-value=1.6e-05  Score=61.37  Aligned_cols=57  Identities=11%  Similarity=0.132  Sum_probs=32.3

Q ss_pred             CCcEEEEeeCCCCcCCCccC--HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .+|+++|+||+|+.....+.  .+........+++++|++||+++.++++++..+.+.+
T Consensus       144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            68999999999986432221  1334455567789999999999999999998876543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.41  E-value=3.5e-05  Score=63.38  Aligned_cols=50  Identities=20%  Similarity=0.115  Sum_probs=38.1

Q ss_pred             cEEEEeeCCCCcCCCc--c--CHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKV--V--LTEDAQRFANQMG-----IQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~--v--~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f~~  138 (177)
                      |++||+||+||.+...  +  ..++...+++.++     ++++++||++|.||+++|..
T Consensus       159 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          159 HIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             EEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             eEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence            6999999999975211  1  2355667777777     67999999999999987554

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.40  E-value=0.00013  Score=66.50  Aligned_cols=57  Identities=12%  Similarity=0.116  Sum_probs=41.6

Q ss_pred             CCc-EEEEeeCCCCcCCCc---cCHHHHHHHHHHcC-----CcEEEecCCCC--------CCHHHHHHHHHHHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKV---VLTEDAQRFANQMG-----IQLFETSAKDN--------INVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~e~Sak~~--------~~v~~~f~~~~~~~  143 (177)
                      ++| +|||+||+|+.+.+.   ...++...++..++     ++|+++||++|        .||+++|..+.+.+
T Consensus       411 gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          411 GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            577 799999999975322   12346677777776     58999999999        35777777776544

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.36  E-value=0.00014  Score=59.96  Aligned_cols=51  Identities=25%  Similarity=0.251  Sum_probs=36.2

Q ss_pred             CCc-EEEEeeCCCCcCC------CccCHHHHHHHHHHcC------CcEEEecCCCCCCHHHHHH
Q psy1416          87 PSG-LRLVGNKNDDPQK------KVVLTEDAQRFANQMG------IQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~------~~v~~~~~~~~a~~~~------~~~~e~Sak~~~~v~~~f~  137 (177)
                      ++| ++||+||+||...      .....++...+++.++      ++|+++||++|.||++++.
T Consensus       154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            466 9999999999531      1112344555666655      4699999999999999765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.35  E-value=5.5e-05  Score=62.56  Aligned_cols=54  Identities=15%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+.|++||+||+|+...+.    ...++. ..+. .++++||++|.||.++|..+.+.+.
T Consensus       130 ~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          130 TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred             cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcc
Confidence            3689999999999864321    111111 2232 5789999999999999999987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.35  E-value=3.3e-05  Score=58.78  Aligned_cols=57  Identities=14%  Similarity=0.260  Sum_probs=41.4

Q ss_pred             CcEEEEeeCCCCcCCCccCH-------HHHHHHHHHcCCcE-----EEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLT-------EDAQRFANQMGIQL-----FETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~-------~~~~~~a~~~~~~~-----~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ++++||+||+|+.... +..       +++..++...+..+     +++||++|.||+++|..+.+.+..
T Consensus       140 ~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          140 HTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             GEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            4556666699997532 222       33555777776543     789999999999999999988765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.00017  Score=51.83  Aligned_cols=46  Identities=7%  Similarity=-0.113  Sum_probs=33.8

Q ss_pred             ccccc-hhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCcc
Q psy1416          60 VCTVL-NECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVV  105 (177)
Q Consensus        60 ~~dit-~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v  105 (177)
                      +.|++ +..+|..+. |+..+.....  ...++|++|||||+||...+.+
T Consensus       125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence            47888 899999886 8866532221  2357999999999999876543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.24  E-value=0.00029  Score=61.05  Aligned_cols=26  Identities=15%  Similarity=0.116  Sum_probs=23.5

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ++++++||++|.||+++|..+++.+.
T Consensus       248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp  273 (665)
T 2dy1_A          248 YPVALASGEREIGVLPLLELILEALP  273 (665)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCC
Confidence            47999999999999999999998774

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.00011  Score=63.06  Aligned_cols=49  Identities=16%  Similarity=0.080  Sum_probs=35.0

Q ss_pred             CcEEEEeeCCCCcCCCccCH----HHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLT----EDAQRFANQMG-----IQLFETSAKDNINVEEMF  136 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f  136 (177)
                      .|+|||+||+|+.+.+....    ++...++...+     ++|+++||++|.||+++.
T Consensus       306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            45999999999976433222    33344444444     589999999999998763

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.18  E-value=0.00014  Score=60.23  Aligned_cols=50  Identities=18%  Similarity=0.197  Sum_probs=36.3

Q ss_pred             CCc-EEEEeeCCCCcCCCc----cCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKV----VLTEDAQRFANQMG-----IQLFETSAKDNINVEEMF  136 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f  136 (177)
                      ++| ++||+||+||.+...    ...++...++..++     ++|+++||++|.||.++.
T Consensus       144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred             CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence            455 999999999974211    12345666777766     689999999999997653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.11  E-value=7.2e-05  Score=59.88  Aligned_cols=57  Identities=11%  Similarity=-0.092  Sum_probs=43.6

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      .+.|+++|+||+|+...+....+.+..++..++.+|+++|++++.+|++.+..+...
T Consensus       202 ~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~  258 (360)
T 3t34_A          202 SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR  258 (360)
T ss_dssp             TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred             cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence            367899999999998766555555555556677899999999999988776554443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.06  E-value=0.0001  Score=58.57  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=26.2

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK   32 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~   32 (177)
                      ++.|||||||+ .||++||..|++.|+.+..
T Consensus       148 ~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          148 QVSFYLTSIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             CEEEECCCSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             CceEEEeccCC-CcHHHHHHHHHHHHHhhHH
Confidence            68999999998 5999999999999876543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.96  E-value=0.00058  Score=54.30  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=39.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCH--HHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLT--EDAQRFANQ-------MGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~--~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|.++|+||+|+.....+..  ++.......       +..+++.+||++|.||++++..+.+.+.
T Consensus       194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            357899999999964321111  112211112       1456899999999999999999988664

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.85  E-value=0.00067  Score=49.11  Aligned_cols=30  Identities=40%  Similarity=0.713  Sum_probs=27.4

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      |++|+++||++|.||+++|..|++.+.++.
T Consensus       144 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  173 (203)
T 1zbd_A          144 GFEFFEASAKDNINVKQTFERLVDVICEKM  173 (203)
T ss_dssp             TCEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999987764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=96.84  E-value=0.00056  Score=59.51  Aligned_cols=81  Identities=12%  Similarity=0.132  Sum_probs=50.2

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH----------HHH-----HHHH--------
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED----------AQR-----FANQ--------  116 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~----------~~~-----~a~~--------  116 (177)
                      .|.++..++.... |...+.     ..+.|+++|+||+|+...+.++.++          ...     +...        
T Consensus       208 vda~~~~s~~e~~~l~~~l~-----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~  282 (695)
T 2j69_A          208 MRASQPCTLGERRYLENYIK-----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNI  282 (695)
T ss_dssp             EETTSTTCHHHHHHHHHHTT-----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBC
T ss_pred             EeCCCccchhHHHHHHHHHH-----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            4555555555554 543331     1256899999999996543222211          111     1111        


Q ss_pred             cCCcEEEecCC--------------CCCCHHHHHHHHHHHHHHH
Q psy1416         117 MGIQLFETSAK--------------DNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       117 ~~~~~~e~Sak--------------~~~~v~~~f~~~~~~~~~~  146 (177)
                      ...++|++||+              ++.|+++++..+.+.+...
T Consensus       283 ~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          283 YDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             GGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence            12469999999              9999999999998877543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.00054  Score=50.65  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=26.5

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      ++++|+||||++|.||+++|..|++.++++.
T Consensus       148 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          148 NQLLFTETSALNSENVDKAFEELINTIYQKV  178 (223)
T ss_dssp             TTCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            3678999999999999999999999987643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.82  E-value=0.00091  Score=51.32  Aligned_cols=52  Identities=17%  Similarity=0.070  Sum_probs=37.9

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      +.|.++|.||+||.+...  .+....+.++.+.++ .+||+++.|+++++..+..
T Consensus        46 ~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           46 RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            578999999999975321  122233444567888 9999999999998876654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=96.74  E-value=0.00046  Score=58.99  Aligned_cols=47  Identities=17%  Similarity=0.054  Sum_probs=31.9

Q ss_pred             CCc-EEEEeeCCCCcCCCccC----HHHHHHHH-HHcCC-----cEEEecCCCCCCHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKVVL----TEDAQRFA-NQMGI-----QLFETSAKDNINVE  133 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v~----~~~~~~~a-~~~~~-----~~~e~Sak~~~~v~  133 (177)
                      ++| +|||+||+||.......    ..+...+. ...++     +|+++||++|.||.
T Consensus       314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            455 99999999997522111    23334444 44454     69999999999998

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.66  E-value=0.0013  Score=48.03  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=25.3

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      .+|+||||++|.||+++|..|++.+++.
T Consensus       154 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          154 AAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence            3899999999999999999999988654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.55  E-value=0.0048  Score=49.21  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=37.8

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHH----------HcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFAN----------QMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~----------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ..|.++|.||+|+...... ......+..          .++.+++.+||++|.|+++++..+.+.+.
T Consensus       212 ~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          212 EMADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CSCSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            4578999999999632110 001112211          22457899999999999999999887653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.54  E-value=4e-05  Score=61.33  Aligned_cols=56  Identities=16%  Similarity=0.014  Sum_probs=36.9

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHH--HHHHHcC-CcEEEecCCCCCCHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQ--RFANQMG-IQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~--~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      .+.|+++|+||+|+.+.+....+...  .+...++ ..++.+||++|.|++++|..+.+
T Consensus       196 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          196 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            46899999999999754431111111  0001112 24678999999999999988876

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.51  E-value=0.0015  Score=47.86  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=26.6

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      ++++|+|+||++|.||+++|..|++.+...
T Consensus       147 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  176 (218)
T 4djt_A          147 KNYEYFEISAKTAHNFGLPFLHLARIFTGR  176 (218)
T ss_dssp             CCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            367899999999999999999999988654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.50  E-value=0.0015  Score=47.41  Aligned_cols=30  Identities=37%  Similarity=0.649  Sum_probs=26.8

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRSK   31 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~   31 (177)
                      +++|+++||++|.||+++|..|++.+.+..
T Consensus       155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          155 GIPFIESSAKNDDNVNEIFFTLAKLIQEKI  184 (213)
T ss_dssp             TCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999886653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=96.48  E-value=0.0029  Score=47.19  Aligned_cols=57  Identities=12%  Similarity=-0.133  Sum_probs=41.1

Q ss_pred             CCCcEEEEeeCC-CCcCCCccCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKN-DDPQKKVVLTEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        86 ~~~~~ilvgnK~-Dl~~~~~v~~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .++|++|.+||. |+.  ..++..+..+...-    .....+.|||++|+|+.+.+..|++.+.
T Consensus       161 ~gapLLVlANKqqDlp--~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          161 SGRPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             SCSCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             CCCeEEEEeCCCcCcc--CCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            478999999996 775  34555554433211    1234779999999999999999987654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.41  E-value=0.0036  Score=48.63  Aligned_cols=59  Identities=10%  Similarity=-0.112  Sum_probs=37.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC------CCCHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD------NINVEEMFMAITNLVL  144 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~------~~~v~~~f~~~~~~~~  144 (177)
                      .+.|+++|+||+|+........+........++..|+++|+.+      +.|+++++..+...+.
T Consensus       197 ~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          197 EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            3689999999999975543222222210011236788887765      6788888887766554

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.25  E-value=0.0017  Score=47.72  Aligned_cols=29  Identities=28%  Similarity=0.492  Sum_probs=26.2

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      ++.|+||||++|.||+++|..|++.++..
T Consensus       148 ~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          148 NLQYYDISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             TCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999988653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.07  E-value=0.011  Score=46.30  Aligned_cols=57  Identities=12%  Similarity=-0.134  Sum_probs=40.9

Q ss_pred             CCCcEEEEeeC-CCCcCCCccCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNK-NDDPQKKVVLTEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        86 ~~~~~ilvgnK-~Dl~~~~~v~~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .++|++|.+|| -|+.  ..++..+..+...-    .......|||++|+|+.+.+..+++.+.
T Consensus       246 ~~apLLVfANKkQDlp--~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          246 SGRPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             TTCCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             CCCeEEEEeCCccccc--CCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            47899999997 4885  34555544432211    1234779999999999999999997764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.02  E-value=0.005  Score=49.42  Aligned_cols=50  Identities=14%  Similarity=0.071  Sum_probs=35.8

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHH---HcCCcEEEecCCCCCCHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFAN---QMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~---~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|.+||.||+||.+...  .+....|..   ..|++.+.+||+++.+++++-..
T Consensus       160 ~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          160 QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred             CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence            578899999999975321  111333333   46788999999999999987654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.01  E-value=0.011  Score=46.91  Aligned_cols=57  Identities=12%  Similarity=0.096  Sum_probs=36.9

Q ss_pred             CcEEEEeeCCCCcCCCccCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQ----------MGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----------~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+.++|.||+|+.............+...          +..+++.+||+++.|+++++..+.+...
T Consensus       194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            35677779999753222111222233221          2456889999999999999988877553

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.82  E-value=0.011  Score=42.56  Aligned_cols=29  Identities=41%  Similarity=0.523  Sum_probs=26.5

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      ++.|++|||+++.||+++|..|++.+++.
T Consensus       141 ~~~~~d~Sal~~~~i~~l~~~l~~~~~~~  169 (199)
T 2f9l_A          141 NLSFIETSALDSTNVEEAFKNILTEIYRI  169 (199)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.69  E-value=0.0013  Score=51.72  Aligned_cols=53  Identities=13%  Similarity=0.058  Sum_probs=36.5

Q ss_pred             CCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      .++|.+||.||+||.+....  ..++...+-+..|.+.+.+||+++.++++++..
T Consensus       116 ~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          116 NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGG
T ss_pred             CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhh
Confidence            36889999999999764210  012223333345789999999999998877643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.53  E-value=0.009  Score=45.49  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=23.9

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      |++|++|||++|.||+++|..|++.+
T Consensus       140 g~~vi~~SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A          140 GIPVVFTSSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence            68999999999999999999998854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.45  E-value=0.003  Score=49.37  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=16.3

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLR   29 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~   29 (177)
                      +|++|||+||++| ||+++|..+++.|..
T Consensus       187 ~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          187 HNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             TTCCCCCCC----------CHHHHHHHHT
T ss_pred             cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            4788999999999 999999999998854

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.27  E-value=0.0094  Score=45.85  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNL   26 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~   26 (177)
                      |+++++|||++|.||+++|..|++.
T Consensus       137 g~~vi~~SA~~g~gi~el~~~i~~~  161 (272)
T 3b1v_A          137 GVPVVATSALKQTGVDQVVKKAAHT  161 (272)
T ss_dssp             TSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred             CCCEEEEEccCCCCHHHHHHHHHHH
Confidence            6899999999999999999999874

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=95.05  E-value=0.023  Score=49.37  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.3

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+.+..||++|.||+.++..++..+.
T Consensus       256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP  281 (691)
T 1dar_A          256 TPVFLGSALKNKGVQLLLDAVVDYLP  281 (691)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCC
Confidence            46889999999999999988887764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.51  E-value=0.011  Score=47.48  Aligned_cols=55  Identities=16%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             CCcEEEEeeCCCCc--CC-CccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDP--QK-KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~--~~-~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      ..|+++|+||.|..  +. +....+....+++..+++++.+||++..+|.+++..-..
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~  258 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEAR  258 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHH
Confidence            46999999999843  22 134567788899999999999999998888877665333

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=94.25  E-value=0.1  Score=43.83  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+.|..||++|.||+.++..+...+.
T Consensus       252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P  277 (529)
T 2h5e_A          252 TPVFFGTALGNFGVDHMLDGLVEWAP  277 (529)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eEEEeeecccCCCHHHHHHHHHHhCC
Confidence            36788899999999888888776654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.04  E-value=0.033  Score=43.31  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +.|+|||||+|.||+++|..+...+
T Consensus       147 ~~~~~~SAktg~gv~~lf~~l~gei  171 (301)
T 1u0l_A          147 YPIVKTSAKTGMGIEELKEYLKGKI  171 (301)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHSSSE
T ss_pred             CcEEEEECCCCcCHHHHHHHhcCCe
Confidence            6799999999999999998877643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.48  E-value=0.033  Score=42.31  Aligned_cols=25  Identities=16%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNL   26 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~   26 (177)
                      |+++++|||++|.||+++|..|.+.
T Consensus       140 g~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          140 GCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999999874

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=93.42  E-value=0.0089  Score=48.54  Aligned_cols=49  Identities=16%  Similarity=0.174  Sum_probs=33.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ..|+++|+||+|+. .. -..+...+.....+..++.+||+.+.++.+++.
T Consensus       214 ~kP~i~v~NK~D~~-~~-~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAA-SD-EQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGS-CH-HHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCcccc-ch-HHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            47999999999986 21 111222223333367899999999999876543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=93.27  E-value=0.16  Score=44.16  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=21.9

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+.|..||++|.||+.++..+++.+.
T Consensus       254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP  279 (693)
T 2xex_A          254 YPVLCGTAFKNKGVQLMLDAVIDYLP  279 (693)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eeEEEeecccCcCHHHHHHHHHHHCC
Confidence            36888999999999998888887764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=93.16  E-value=0.18  Score=43.84  Aligned_cols=26  Identities=27%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ++.+..||+++.||+.++..++..+.
T Consensus       262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP  287 (704)
T 2rdo_7          262 ILVTCGSAFKNKGVQAMLDAVIDYLP  287 (704)
T ss_pred             eEEEEeecccCccHHHHHHHHHHHCC
Confidence            46889999999999999999988775

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.93  E-value=0.062  Score=40.84  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=24.0

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      |+++++|||++|.||+++|..+++.+
T Consensus       139 g~~~~~~Sa~~g~gi~~l~~~i~~~~  164 (271)
T 3k53_A          139 GVPVIPTNAKKGEGVEELKRMIALMA  164 (271)
T ss_dssp             SSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999998865

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=92.72  E-value=0.022  Score=46.60  Aligned_cols=28  Identities=11%  Similarity=0.167  Sum_probs=25.2

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      +|++|+++|||+|.||+++|..|++.+.
T Consensus       168 ~g~~v~~vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          168 YEAKVLLVSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             TTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence            3678999999999999999999999773

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=92.53  E-value=0.037  Score=46.47  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=20.2

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLR   29 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~   29 (177)
                      +++|++|||++|.||+++|..|++.+..
T Consensus       181 ~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          181 ENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            5679999999999999999999998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=92.34  E-value=0.033  Score=42.63  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=23.5

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      |+++++|||++|.||+++|..|++.+
T Consensus       142 g~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          142 GCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999988754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=92.22  E-value=0.1  Score=39.61  Aligned_cols=41  Identities=0%  Similarity=-0.355  Sum_probs=23.9

Q ss_pred             hhccc--chhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH
Q psy1416          68 AWLGC--GWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE  108 (177)
Q Consensus        68 Sf~~~--~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~  108 (177)
                      +|...  .|+..+....+.....|+++|+||+|+...+.++.+
T Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~  175 (270)
T 1h65_A          133 RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  175 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence            45444  276655322221112699999999999765544443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.12  E-value=0.098  Score=39.53  Aligned_cols=35  Identities=9%  Similarity=-0.166  Sum_probs=21.0

Q ss_pred             hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH
Q psy1416          74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE  108 (177)
Q Consensus        74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~  108 (177)
                      |+..+..........|+++|+||+|+...+....+
T Consensus       138 ~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          138 VVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             HHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             HHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence            66655332222112489999999999655444443

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=92.09  E-value=0.084  Score=43.90  Aligned_cols=27  Identities=15%  Similarity=0.078  Sum_probs=24.5

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      +++|+++|||+|.||+++|..|.+.+.
T Consensus       378 ~~~~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          378 DRHMVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             STTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            368999999999999999999999765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.48  E-value=0.11  Score=40.39  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=22.0

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNL   26 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~   26 (177)
                      |+++++|||++|.||+++|..+...
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             CCeEEEEECCCCCCHHHHHhhccCc
Confidence            6789999999999999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=91.28  E-value=0.17  Score=41.86  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=23.5

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +.+++++|||+|.||+++|..|.+.+
T Consensus       357 ~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          357 ITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999999865

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=90.72  E-value=0.15  Score=42.38  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      .+++++|||+|.||+++|..|++.+
T Consensus       372 ~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          372 TEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999866

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=90.57  E-value=0.15  Score=41.12  Aligned_cols=26  Identities=19%  Similarity=0.441  Sum_probs=23.4

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +++|+++||++|.||+++|..|.+.+
T Consensus       165 ~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          165 NVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             TCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CCEEEEEECCCCcChHHHHHHHHHhC
Confidence            46899999999999999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=90.55  E-value=0.15  Score=39.61  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      .+++++||++|.||+++|..|++.+
T Consensus       156 ~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          156 TEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            5799999999999999999998865

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=90.39  E-value=0.067  Score=47.01  Aligned_cols=54  Identities=17%  Similarity=0.023  Sum_probs=35.8

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHH----cC-CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----MG-IQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----~~-~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +.|+++|.||+|+......... ... .+.    .+ ..++.+||++|.|+++++..+.+.
T Consensus       217 g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          217 GQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             CSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             CCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            6799999999999754432221 111 001    12 235679999999999988887763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=89.60  E-value=0.26  Score=39.00  Aligned_cols=28  Identities=11%  Similarity=0.103  Sum_probs=24.5

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVLR   29 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~   29 (177)
                      +.+++++||++|.||+++|..|.+.+..
T Consensus       257 ~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          257 RPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999887643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=89.44  E-value=0.18  Score=40.73  Aligned_cols=26  Identities=19%  Similarity=0.419  Sum_probs=17.3

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +++|+++||++|.||+++|..|.+.+
T Consensus       171 ~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          171 NAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             TCCEEEC------CHHHHHHHHHHHS
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            46899999999999999999998755

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=89.39  E-value=0.16  Score=39.44  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=23.3

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLVLR   29 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i~~   29 (177)
                      ++|+||||++ .+|.++|..+++.++.
T Consensus       156 ~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          156 LIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             CEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             eEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence            7899999999 9999999999987643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=87.75  E-value=0.32  Score=39.25  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=23.2

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      +++|+++||++|.||+++|..|.+.+
T Consensus       173 ~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          173 NAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             TCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            46899999999999999999988755

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=87.73  E-value=0.41  Score=39.68  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      +++|+++||++|.||+++|..|.+.+.
T Consensus       162 ~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          162 NSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            467999999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=87.26  E-value=0.48  Score=37.93  Aligned_cols=43  Identities=14%  Similarity=0.091  Sum_probs=33.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD  128 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~  128 (177)
                      ..-|+++|+||.|..-......+....++..++.+++.+||+.
T Consensus       198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            3579999999999653223346777888888899999999874

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=86.88  E-value=0.23  Score=41.82  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=22.5

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      ++|+++||++|.||+++|..|...+
T Consensus       142 ~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          142 VQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             EEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCchhHHHHHHHhh
Confidence            5799999999999999999998754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=86.66  E-value=0.63  Score=37.91  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      ++.++++||+++.||+++|..|++.+.
T Consensus       298 g~~vi~iSA~~g~gi~eL~~~i~~~l~  324 (416)
T 1udx_A          298 GLAVLPVSALTGAGLPALKEALHALVR  324 (416)
T ss_dssp             TSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCccCHHHHHHHHHHHHH
Confidence            567999999999999999999999774

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=86.13  E-value=0.16  Score=40.50  Aligned_cols=29  Identities=21%  Similarity=0.313  Sum_probs=16.2

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416           1 MGIQLFETSAKDNINVEEMFMAITNLVLRS   30 (177)
Q Consensus         1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~   30 (177)
                      +|++||++||++|.| ++.|..+++.|...
T Consensus       206 ~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          206 HNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             C-CCSCCCC----------CHHHHHHHHHT
T ss_pred             CCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            368899999999999 99999999988654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=85.82  E-value=1.1  Score=37.78  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+.+..||+++.||+.++..+++.+.
T Consensus       269 ~PV~~gSA~~~~Gv~~LLd~iv~~~P  294 (548)
T 3vqt_A          269 TPVFFGSAINNFGVREMLDMFVEFAP  294 (548)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred             ceeeecccccCcCHHHHHHHHHHhCC
Confidence            35788899999999999888876654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=83.63  E-value=1.1  Score=35.82  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             cEEEeccCCCCCHHHHHHHHHHH
Q psy1416           4 QLFETSAKDNINVEEMFMAITNL   26 (177)
Q Consensus         4 ~f~EtSAk~~~nV~~~F~~l~~~   26 (177)
                      .++++||++|.||+++|..|.+.
T Consensus       135 ~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          135 DVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cEEEEeCCCCcCHHHHHhhhhhh
Confidence            68999999999999999998764

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=83.52  E-value=0.27  Score=41.11  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=21.3

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITN   25 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~   25 (177)
                      ++|+++||++|.||+++|..|+.
T Consensus       141 ~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          141 SQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CEEEECCTTTCTTCTTHHHHTTT
T ss_pred             ccEEEEeeeeccCcchhhhhhhh
Confidence            68999999999999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=82.95  E-value=0.23  Score=38.53  Aligned_cols=25  Identities=24%  Similarity=0.146  Sum_probs=21.9

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      .+++++||++|.||+++|..|++.+
T Consensus       147 ~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          147 AEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             SEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999988744

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=81.49  E-value=0.15  Score=41.54  Aligned_cols=26  Identities=15%  Similarity=0.341  Sum_probs=7.8

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416           2 GIQLFETSAKDNINVEEMFMAITNLV   27 (177)
Q Consensus         2 ~~~f~EtSAk~~~nV~~~F~~l~~~i   27 (177)
                      |++||++||+++.||+++|..|...|
T Consensus       200 ~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          200 KIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             TCCCCCCC-----------------C
T ss_pred             CCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            68899999999999999999888765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=81.41  E-value=1.7  Score=37.30  Aligned_cols=26  Identities=35%  Similarity=0.547  Sum_probs=21.2

Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416         119 IQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       119 ~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      .+.+..||+++.||+.++..++..+.
T Consensus       213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          213 FPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             CCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             ccccccccccCCCchhHhhhhhcccc
Confidence            46788999999999998887776543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=81.20  E-value=0.74  Score=39.72  Aligned_cols=26  Identities=15%  Similarity=0.116  Sum_probs=23.8

Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416           3 IQLFETSAKDNINVEEMFMAITNLVL   28 (177)
Q Consensus         3 ~~f~EtSAk~~~nV~~~F~~l~~~i~   28 (177)
                      ++++++||++|.||+++|..|++.+.
T Consensus       248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp  273 (665)
T 2dy1_A          248 YPVALASGEREIGVLPLLELILEALP  273 (665)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCC
Confidence            58999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-12
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-05
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-10
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-04
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-10
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	0.002
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-10
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	7e-05
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-09
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	0.002
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-09
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-04
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-09
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-04
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-09
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-05
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-09
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	0.003
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-08
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-04
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-08
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	0.002
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-08
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	0.001
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	0.001
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-08
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-04
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	4e-08
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-06
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-08
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-04
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-08
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-04
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-08
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-04
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-08
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	0.001
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-08
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-04
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-07
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	0.001
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-07
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	0.001
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	5e-07
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-07
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-07
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-07
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-04
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-06
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-06
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	7e-04
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	0.001
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-06
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	0.001
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-06
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-06
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-06
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-04
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	9e-06
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	0.001
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	9e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	0.002
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-05
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.002
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-05
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-05
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	8e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-05
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	9e-05
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	0.004
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-04
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-04
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	0.002
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-04
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	8e-04
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	0.001

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 8e-12
 Identities = 22/93 (23%), Positives = 44/93 (47%)

Query: 60  VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
           +  + ++ ++L             +     + L+GNK D P ++ V    A+  A++ GI
Sbjct: 94  MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 153

Query: 120 QLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 152
             FETSA    NVE+    + +L+++  ++  E
Sbjct: 154 PYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 186

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
            GI  FETSA    NVE+    + +L+++  ++  E
Sbjct: 151 YGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 186

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 25/100 (25%), Positives = 41/100 (41%)

Query: 46  NIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV 105
           ++     +      +   +   A        +  I         L L+GNK D   ++VV
Sbjct: 71  SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV 130

Query: 106 LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
             ED ++ A + G+   ETSAK  +NV+  F AI   + R
Sbjct: 131 KREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
            G+   ETSAK  +NV+  F AI   + R
Sbjct: 142 YGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 1e-10
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           LVGNK D   ++ V + + +  A + G    ETSAK    V+E+F  I 
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 1   MGIQLFETSAKDNINVEEMFMAIT 24
            G    ETSAK    V+E+F  I 
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIV 161

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 3e-10
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK+D    + V T++A+ FA +  +   ETSA D+ NVEE F  I   + R   +++
Sbjct: 114 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
             +   ETSA D+ NVEE F  I   + R   +++
Sbjct: 139 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 1e-09
 Identities = 19/69 (27%), Positives = 32/69 (46%)

Query: 72  CGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNIN 131
                +          + + L+GNK D   ++ V  E+A++FA + G+   E SAK   N
Sbjct: 94  HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 153

Query: 132 VEEMFMAIT 140
           VE+ F+   
Sbjct: 154 VEDAFLEAA 162

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 1   MGIQLFETSAKDNINVEEMFMAIT 24
            G+   E SAK   NVE+ F+   
Sbjct: 139 NGLLFLEASAKTGENVEDAFLEAA 162

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-09
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
           LVGNK D+   + V + +A+  A        ETSAK N NV+E+F  + NL  R  
Sbjct: 113 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
                 ETSAK N NV+E+F  + NL  R  
Sbjct: 138 WKCAFMETSAKLNHNVKELFQELLNLEKRRT 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           L+GNK+D   ++ V  E+ + FA + G+   ETSAK   NVEE F+     + R  ++
Sbjct: 113 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
            G+   ETSAK   NVEE F+     + R  ++
Sbjct: 138 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 8e-09
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
           LVGNK D   ++ V   +A  F     +  FE SAK  +NV+E F  +   V + +++
Sbjct: 116 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
             +  FE SAK  +NV+E F  +   V + +++
Sbjct: 141 HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 9e-09
 Identities = 18/95 (18%), Positives = 38/95 (40%)

Query: 46  NIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV 105
            +     +      +   + +          +  +         + + GNK D    + V
Sbjct: 68  ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV 127

Query: 106 LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           +  DA+ +A+ +     ETSAK+ IN+ E+F+ I+
Sbjct: 128 MERDAKDYADSIHAIFVETSAKNAININELFIEIS 162

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 1   MGIQLFETSAKDNINVEEMFMAIT 24
           +     ETSAK+ IN+ E+F+ I+
Sbjct: 139 IHAIFVETSAKNAININELFIEIS 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 1e-08
 Identities = 15/84 (17%), Positives = 34/84 (40%)

Query: 67  CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA 126
            ++     + +            + LVGNK+D  + + V  ++ +  A     +  ETSA
Sbjct: 85  GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 144

Query: 127 KDNINVEEMFMAITNLVLRSKKEQ 150
             + NV+ +F  +   +   +  +
Sbjct: 145 ALHHNVQALFEGVVRQIRLRRDSK 168

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 6e-04
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
              +  ETSA  + NV+ +F  +   +   +  +
Sbjct: 135 FDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 23/80 (28%), Positives = 32/80 (40%)

Query: 70  LGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN 129
                  I  I           ++GNK D   K+ V  E  ++ A   GI+  ETSAK N
Sbjct: 94  FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 153

Query: 130 INVEEMFMAITNLVLRSKKE 149
           INVE  F  +   +     +
Sbjct: 154 INVENAFFTLARDIKAKMDK 173

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
            GI+  ETSAK NINVE  F  +   +     +
Sbjct: 141 YGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 90  LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
           + LVGNK D   K+ V  E+ +R A ++ +   ETSAK   NV+++F  + 
Sbjct: 108 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 158

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 1   MGIQLFETSAKDNINVEEMFMAIT 24
           + +   ETSAK   NV+++F  + 
Sbjct: 135 LNVMFIETSAKAGYNVKQLFRRVA 158

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 60  VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
           V  V     ++           YC        LVGNK D   ++V   E   +FA +  +
Sbjct: 86  VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEG-LKFARKHSM 144

Query: 120 QLFETSAKDNINVEEMFMAITNLVLRS 146
              E SAK    V+  F  +   ++++
Sbjct: 145 LFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 6/29 (20%), Positives = 13/29 (44%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRS 30
            +   E SAK    V+  F  +   ++++
Sbjct: 143 SMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 74  WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVE 133
              +  +         L +VGNK D  +++ V  ++A+ +A  +G + + TSAK N  +E
Sbjct: 95  KNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 154

Query: 134 EMFMAITNLVLRS 146
           E+F+ +   ++ +
Sbjct: 155 ELFLDLCKRMIET 167

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
           +G + + TSAK N  +EE+F+ +   ++ +
Sbjct: 138 VGAKHYHTSAKQNKGIEELFLDLCKRMIET 167

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 4e-08
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GI 119
                +      G ++             L    ++      +VV    A+     M   
Sbjct: 82  DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRC 141

Query: 120 QLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
             +ET A   +NV+ +F  +   V+  +K+Q+
Sbjct: 142 SYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 6e-06
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
               +ET A   +NV+ +F  +   V+  +K+Q+
Sbjct: 140 RCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 5e-08
 Identities = 23/86 (26%), Positives = 41/86 (47%)

Query: 60  VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
           +   +               I       + + LVGNK D   ++VV +E  ++ A+ +G 
Sbjct: 83  LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF 142

Query: 120 QLFETSAKDNINVEEMFMAITNLVLR 145
           + FE SAKDNINV++ F  + +++  
Sbjct: 143 EFFEASAKDNINVKQTFERLVDVICE 168

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
           +G + FE SAKDNINV++ F  + +++  
Sbjct: 140 LGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 18/88 (20%), Positives = 40/88 (45%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
            +V +  ++          +         + L+GNK D   ++ V  E+ Q+ A Q+ + 
Sbjct: 84  FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVT 143

Query: 121 LFETSAKDNINVEEMFMAITNLVLRSKK 148
             E SAK  +NV++ F  +  ++ + ++
Sbjct: 144 YMEASAKIRMNVDQAFHELVRVIRKFQE 171

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 7/32 (21%), Positives = 18/32 (56%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKK 32
           + +   E SAK  +NV++ F  +  ++ + ++
Sbjct: 140 LKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 5e-08
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 60  VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
           +   +            +            + L GNK D    + V   +A RFA +  +
Sbjct: 83  LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL 142

Query: 120 QLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 152
              ETSA    NVEE F+     +L  K E  E
Sbjct: 143 MFLETSALTGENVEEAFVQCARKILN-KIESGE 174

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
             +   ETSA    NVEE F+     +L  K E  E
Sbjct: 140 NELMFLETSALTGENVEEAFVQCARKILN-KIESGE 174

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 47.6 bits (112), Expect = 6e-08
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK+D   K+ V  E+A+  A+Q  +   ETSAK   NV+++F  +   +  
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
             +   ETSAK   NV+++F  +   +  
Sbjct: 139 WNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 7e-08
 Identities = 21/102 (20%), Positives = 42/102 (41%)

Query: 47  IRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL 106
           I +   +      +   +       C    +  I           LVGNK D  +++ V 
Sbjct: 70  ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS 129

Query: 107 TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
            + A+ F+    +   ETSAK++ NVE++F+ +   ++   +
Sbjct: 130 QQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKK 32
             +   ETSAK++ NVE++F+ +   ++   +
Sbjct: 140 QDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-07
 Identities = 19/81 (23%), Positives = 32/81 (39%)

Query: 67  CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA 126
            ++     + I            + LVGNK+D  + + V   + +  A     +  ETSA
Sbjct: 91  ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 150

Query: 127 KDNINVEEMFMAITNLVLRSK 147
               NV+E+F  I   V   +
Sbjct: 151 AVQHNVKELFEGIVRQVRLRR 171

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
              +  ETSA    NV+E+F  I   V   +
Sbjct: 141 FDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 4e-07
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK  D   + V +  AQ  A   GI   ETSAK    VE+ F  +   + +
Sbjct: 113 LVGNK-CDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
            GI   ETSAK    VE+ F  +   + +
Sbjct: 137 YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 4e-07
 Identities = 19/84 (22%), Positives = 35/84 (41%)

Query: 56  GKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN 115
           G   V +V +  ++     +    +         + LVGNK D   ++V+  E+ +  A 
Sbjct: 78  GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE 137

Query: 116 QMGIQLFETSAKDNINVEEMFMAI 139
                  E+SAK+N    ++F  I
Sbjct: 138 SWNAAFLESSAKENQTAVDVFRRI 161

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 5e-07
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
            +V ++ ++          +         + LV NK D    + V  +  +  A +  I 
Sbjct: 83  YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP 142

Query: 121 LFETSAKD-NINVEEMFMAITNLVLR 145
             ETSAKD  +NV++ F  +  ++ +
Sbjct: 143 YIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (105), Expect = 6e-07
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 75  MTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEE 134
                 +          L+     D + +VV  +  +  A ++GI   E+SAK++ NV E
Sbjct: 94  KQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 153

Query: 135 MFMAITNLVLR 145
           +F  +  L+  
Sbjct: 154 IFFTLAKLIQE 164

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
           +GI   E+SAK++ NV E+F  +  L+  
Sbjct: 136 LGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 6e-07
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 60  VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
           V  + N  ++            +         LVGNK D      V T+ AQ+FA+   +
Sbjct: 82  VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM 141

Query: 120 QLFETSAK---DNINVEEMFMAI 139
            LFETSAK   DN +VE +FM +
Sbjct: 142 PLFETSAKNPNDNDHVEAIFMTL 164

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 7e-07
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRS 146
           ++     D  ++ V TE+AQ +    G    FETSAKD  NV   F      VL +
Sbjct: 119 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRS 30
               FETSAKD  NV   F      VL +
Sbjct: 146 DYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
             + +  ++     +              L LVGNK D    + V TE+ ++ A ++   
Sbjct: 80  YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA 139

Query: 121 LFETSAKDN-INVEEMFMAITNLVLRSK 147
            +E SA     N+ E+F  +   V R +
Sbjct: 140 FYECSACTGEGNITEIFYELCREVRRRR 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           ++GNK D   ++V          ++  I  FETSAK+ INVE+ F  I    L+ + E +
Sbjct: 116 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 175

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
             I  FETSAK+ INVE+ F  I    L+ + E +
Sbjct: 141 NNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 3/80 (3%)

Query: 65  NECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGIQL 121
           +              + +  L  +GL +  NK D  +      +               +
Sbjct: 94  DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 153

Query: 122 FETSAKDNINVEEMFMAITN 141
               A     + +    + +
Sbjct: 154 QACCALTGEGLCQGLEWMMS 173

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 13/89 (14%)

Query: 78  CPIIYCWLFPSGLRLVGNKNDDPQKKVVL------------TEDAQRFANQMGIQLF-ET 124
            P I      +   LVG + D       +             E A++ A  +    + E 
Sbjct: 98  VPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVEC 157

Query: 125 SAKDNINVEEMFMAITNLVLRSKKEQKER 153
           SA     ++ +F       L   + +K R
Sbjct: 158 SALTQKGLKNVFDEAILAALEPPEPKKSR 186

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 2   GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKER 37
            ++  E SA     ++ +F       L   + +K R
Sbjct: 151 AVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSR 186

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 91  RLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLR 145
                +    +++ V  E+ +  AN++G     E SAK    V E+F   T   L+
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 3   IQLFETSAKDNINVEEMFMAITNLVLR 29
               E SAK    V E+F   T   L+
Sbjct: 151 FGYMECSAKTKDGVREVFEMATRAALQ 177

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 15/80 (18%), Positives = 31/80 (38%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
            T              +       +  + +    +   +  ++ V  E+ ++ A + G+ 
Sbjct: 85  VTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL 144

Query: 121 LFETSAKDNINVEEMFMAIT 140
            FETSAK   NV ++F+ I 
Sbjct: 145 FFETSAKTGENVNDVFLGIG 164

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 95  NKNDDPQKKVVLTEDAQRFANQMGIQLF-ETSAKDNINVEEMFMAITNLVL 144
            + +D ++K +  E  Q+ A ++G   + E SA     ++ +F      +L
Sbjct: 133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITNLVLR 145
           LVGNK D   ++VV  E  Q  A Q       E+SAK  INV E+F  +   + R
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
                 E+SAK  INV E+F  +   + R
Sbjct: 139 CNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 9e-06
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 74  WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVE 133
              +  +         + L GNK D   K+ V  ++AQ +A+   +   ETSAK ++NV 
Sbjct: 98  KNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157

Query: 134 EMFMAITNLVLRS 146
           E+FMAI   + ++
Sbjct: 158 EIFMAIAKKLPKN 170

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
             +   ETSAK ++NV E+FMAI   + ++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 9e-06
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 60  VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
           V +  +  ++           +   +      LV NK D      +  E+A+  A ++ +
Sbjct: 81  VFSTTDRESFEAISSW--REKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL 138

Query: 120 QLFETSAKDNINVEEMFMAITNLVLR 145
           + + TS K+++NV E+F  +    L+
Sbjct: 139 RFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVLR 29
           + ++ + TS K+++NV E+F  +    L+
Sbjct: 136 LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 13/65 (20%)

Query: 93  VGNKNDDPQKKVVLTED------------AQRFANQMG-IQLFETSAKDNINVEEMFMAI 139
           VG K D    K  + +                 A ++G ++  E SA     ++ +F   
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

Query: 140 TNLVL 144
              VL
Sbjct: 175 IRAVL 179

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 3   IQLFETSAKDNINVEEMFMAITNLVL 28
           ++  E SA     ++ +F      VL
Sbjct: 154 VKYLECSALTQRGLKTVFDEAIRAVL 179

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV---LTEDAQRFANQM 117
               +           +  +    L  + L +  NK D  Q                   
Sbjct: 80  VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDR 139

Query: 118 GIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
             Q+F+TSA     ++E    +    L+S++
Sbjct: 140 KWQIFKTSATKGTGLDEAMEWLVET-LKSRQ 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 92  LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
           LVGNK D   K+VV  + A+ FA+   +   ETSA D+ NVE+ F+ +   +  S  +Q 
Sbjct: 116 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

Query: 152 ERQ 154
             +
Sbjct: 176 LNE 178

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 8e-05
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 74  WMTICPIIYCWLFPSGLRLVGNKND------------DPQKKVVLTEDAQRFANQMGIQL 121
                  I  +   + + LVG K+D            + ++  V  +     A Q+G   
Sbjct: 93  LKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 152

Query: 122 F-ETSAKDNIN-VEEMFMAITNLVLR 145
           + E SA  + N V ++F   T   + 
Sbjct: 153 YIECSALQSENSVRDIFHVATLACVN 178

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 67  CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDP---QKKVVLTEDAQRFANQMGIQLFE 123
                        +    L    + ++GNK D P    +K ++ +          I  + 
Sbjct: 84  EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 143

Query: 124 TSAKDNINVEEMFMAI 139
            S K+  N++     +
Sbjct: 144 ISCKEKDNIDITLQWL 159

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSG---LRLVGNKNDDPQKKVVLTEDAQRFANQM 117
           C ++         +  +       +       + L GNK D   +KV     +  F  + 
Sbjct: 78  CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKK 135

Query: 118 GIQLFETSAKDNINVEEMFMAITNLVL 144
            +Q ++ SAK N N E+ F+ +   ++
Sbjct: 136 NLQYYDISAKSNYNFEKPFLWLARKLI 162

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 1   MGIQLFETSAKDNINVEEMFMAITNLVL 28
             +Q ++ SAK N N E+ F+ +   ++
Sbjct: 135 KNLQYYDISAKSNYNFEKPFLWLARKLI 162

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 10/90 (11%), Positives = 19/90 (21%), Gaps = 9/90 (10%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV---LTEDAQRFANQM 117
             +      L              L         NK D P          E         
Sbjct: 98  DRMSTASKELHLMLQEEELQDAALLV------FANKQDQPGALSASEVSKELNLVELKDR 151

Query: 118 GIQLFETSAKDNINVEEMFMAITNLVLRSK 147
              +  +SA     + E    + +++   +
Sbjct: 152 SWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 3/53 (5%)

Query: 92  LVGNKNDDP---QKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITN 141
           +  NK D         +              Q+   SA     V++    +  
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 31/88 (35%)

Query: 61  CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
            +           ++    +     FP  +       ++ +K V      +   +   I 
Sbjct: 88  ASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP 147

Query: 121 LFETSAKDNINVEEMFMAITNLVLRSKK 148
           LF TSAK+ INV+  F  I    L+  +
Sbjct: 148 LFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 3   IQLFETSAKDNINVEEMFMAITNLVLRSKK 32
           I LF TSAK+ INV+  F  I    L+  +
Sbjct: 146 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 5e-04
 Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 63  VLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDP---QKKVVLTEDAQRFANQMGI 119
             +           +  +    L  + L +  NK D P       +  +           
Sbjct: 77  SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW 136

Query: 120 QLFETSAKDNINVEEMFMAITN 141
            +  T A     + E    ++N
Sbjct: 137 YIQATCATSGDGLYEGLDWLSN 158

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 10/99 (10%)

Query: 57  KKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ 116
           K    T++    +     +                 + +   +        + A+ F  +
Sbjct: 98  KALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILK 157

Query: 117 MGIQL----------FETSAKDNINVEEMFMAITNLVLR 145
           M + L            T A D  N+  +F A+ + +L+
Sbjct: 158 MFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 196

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 8e-04
 Identities = 8/82 (9%), Positives = 20/82 (24%), Gaps = 3/82 (3%)

Query: 63  VLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGI 119
             +              I    +  + + +  NK D P       +  +           
Sbjct: 89  CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 148

Query: 120 QLFETSAKDNINVEEMFMAITN 141
            +  + A     + E    +T+
Sbjct: 149 YVQPSCATSGDGLYEGLTWLTS 170

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 11/70 (15%), Positives = 19/70 (27%)

Query: 67  CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA 126
            A      +   P +           V          ++ T  +QR   Q  +++F  S 
Sbjct: 91  DALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 150

Query: 127 KDNINVEEMF 136
                  E F
Sbjct: 151 VMRNGYLEAF 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.81
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.8
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.8
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.79
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.78
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.77
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.73
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.72
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.71
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.69
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.65
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.64
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.63
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.61
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.44
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.44
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.34
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.32
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.29
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.27
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.26
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.11
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.1
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.78
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.74
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.73
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.73
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.7
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.64
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.6
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.55
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.44
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.31
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.23
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.2
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.2
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.2
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.07
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.87
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.85
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.48
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.43
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.31
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.31
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.3
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.98
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.68
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.54
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.77
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.63
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.34
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.99
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.66
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.21
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.01
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	87.67
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.78

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-20  Score=133.90  Aligned_cols=87  Identities=20%  Similarity=0.172  Sum_probs=76.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+|++.||+++. |+.++.. ......+|++|||||+||...++|+..++..+++.++++|+||||++|.||+++|..
T Consensus        78 v~d~t~~~s~~~~~~~~~~i~~-~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          78 VYSVTDKGSFEKASELRVQLRR-ARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred             eccccccccccccccccchhhc-ccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            59999999999997 9887742 333457899999999999998999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+..++
T Consensus       157 l~~~i~~~~  165 (168)
T d2gjsa1         157 VVRQIRLRR  165 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.9e-20  Score=133.47  Aligned_cols=86  Identities=22%  Similarity=0.251  Sum_probs=76.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~-~v~~~f~  137 (177)
                      ++|++|++||.++. |+..+.+. ....++|++|||||+||...|.|+.+++.++|++++++|+|||||++. ||+++|.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~-~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRV-KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhh-ccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            58999999999997 98877433 334579999999999999999999999999999999999999999986 9999999


Q ss_pred             HHHHHHHHH
Q psy1416         138 AITNLVLRS  146 (177)
Q Consensus       138 ~~~~~~~~~  146 (177)
                      .+++.+.++
T Consensus       161 ~l~~~i~~~  169 (169)
T d1x1ra1         161 DLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-20  Score=133.64  Aligned_cols=86  Identities=22%  Similarity=0.170  Sum_probs=76.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||.++. |+..+... ...+++|++|||||+||...|.|+.+++..+|+.++++|+||||++|.||+++|..
T Consensus        84 vfd~t~~~s~~~~~~~~~~i~~~-~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~  162 (172)
T d2g3ya1          84 VYSITDRASFEKASELRIQLRRA-RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEG  162 (172)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTS-GGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccchhhhhhhhhhhhhhc-cccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHH
Confidence            58999999999997 98766432 23458999999999999998999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+..+
T Consensus       163 l~~~i~~r  170 (172)
T d2g3ya1         163 IVRQVRLR  170 (172)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99988654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3e-20  Score=133.17  Aligned_cols=87  Identities=24%  Similarity=0.269  Sum_probs=76.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~-~v~~~f~  137 (177)
                      ++|+++++||.++. |+..+. .....+++|++|||||+||...|.|+.+++..+|++++++||||||++|. ||+++|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~  157 (168)
T d2atva1          79 VYDITDRGSFEEVLPLKNILD-EIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  157 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHH-HHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             ecccCCccchhhhhhhccccc-ccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHH
Confidence            59999999999996 765443 23334689999999999999889999999999999999999999999998 6999999


Q ss_pred             HHHHHHHHHH
Q psy1416         138 AITNLVLRSK  147 (177)
Q Consensus       138 ~~~~~~~~~~  147 (177)
                      .|++.+.+++
T Consensus       158 ~l~~~i~~~r  167 (168)
T d2atva1         158 ELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-20  Score=133.96  Aligned_cols=85  Identities=27%  Similarity=0.233  Sum_probs=74.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||.++. |+..+.+......++|++|||||+||...|.|+.+++.++|++++++|+||||++|.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            48999999999997 88776544555568999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      |++.+.
T Consensus       160 l~~~~~  165 (171)
T d2erxa1         160 LLNLEK  165 (171)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            997653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.9e-20  Score=132.24  Aligned_cols=84  Identities=21%  Similarity=0.154  Sum_probs=75.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||.++. |+..+.. .....++|++|||||+||...|.|+.+++..+|++++++|+||||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLD-MVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhh-cccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            48999999999997 9877742 333457999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998774

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.7e-20  Score=131.54  Aligned_cols=83  Identities=22%  Similarity=0.318  Sum_probs=75.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||+++. |++++...   .+++|++|||||+||.++|.|+.++++.+|++++++|+|+||++|.||+++|..
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~---~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  157 (164)
T d1z2aa1          81 VFSTTDRESFEAISSWREKVVAE---VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  157 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH---HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEeccchhhhhhccccccccccc---CCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHH
Confidence            59999999999998 99877422   247899999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      |++++++
T Consensus       158 l~~~~lq  164 (164)
T d1z2aa1         158 LAEKHLQ  164 (164)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998863

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.78  E-value=8.6e-20  Score=130.84  Aligned_cols=85  Identities=25%  Similarity=0.241  Sum_probs=76.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||.++. |+.++.. ....+++|++|||||+||...|.|+.+++..+++.++++|+||||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHH-hhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            48999999999997 9987743 333468999999999999998999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      |++.+..
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9988753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.5e-20  Score=130.82  Aligned_cols=84  Identities=25%  Similarity=0.402  Sum_probs=74.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||+++. |+..+...  ....+|++|||||+||..+|.|+.+++..+|++++++|+||||++|.||+++|..
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKM--LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccc--cccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHH
Confidence            59999999999997 88765322  2347899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      |++.+++
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-19  Score=130.47  Aligned_cols=87  Identities=25%  Similarity=0.247  Sum_probs=77.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+.. .....++|++|||||+||...|.+..+++..+++.++++||||||++|.||+++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  162 (173)
T d2fn4a1          84 VFAINDRQSFNEVGKLFTQILR-VKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  162 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             ecccccccccchhhhhhHHHHH-HhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            59999999999997 9877632 233458999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+++
T Consensus       163 l~~~i~k~~  171 (173)
T d2fn4a1         163 LVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999987653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-19  Score=128.27  Aligned_cols=88  Identities=26%  Similarity=0.355  Sum_probs=78.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||+.+. |+..+..  ...+++|++|||||+|+...+.+..+++..+|+.++++|+||||++|.||+++|..
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQ--HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHH--hCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            58999999999997 8877632  23458999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.++.++
T Consensus       160 i~~~i~~~~~~  170 (173)
T d2a5ja1         160 TAKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4e-19  Score=127.42  Aligned_cols=86  Identities=22%  Similarity=0.241  Sum_probs=76.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+.. .......|+||||||+|+...+.++.+++..++++++++|+||||++|.||+++|..
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~  161 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILR-VKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE  161 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHh-hcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHH
Confidence            59999999999997 9876632 233357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      |++.+.+.
T Consensus       162 l~~~i~k~  169 (171)
T d2erya1         162 LVRVIRKF  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.4e-19  Score=128.14  Aligned_cols=82  Identities=26%  Similarity=0.364  Sum_probs=73.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||.++. |+..+.  ....++.|++|||||+||.+.|.+..+++..+|+.++++|+||||++|.||+++|..
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELR--QHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHH--HHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhh--hccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            59999999999998 876653  223358999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      ++++|
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99876

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.1e-19  Score=127.04  Aligned_cols=80  Identities=35%  Similarity=0.428  Sum_probs=70.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC---CCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD---NINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~---~~~v~~~  135 (177)
                      ++|++|++||+++. |+.++.+ ....+++|++|||||+||...+.|+.+++..++++++++|+|||||+   +.||+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQ-HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHh-hccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            59999999999997 9987742 33346899999999999998899999999999999999999999997   5699999


Q ss_pred             HHHHH
Q psy1416         136 FMAIT  140 (177)
Q Consensus       136 f~~~~  140 (177)
                      |..||
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-19  Score=127.89  Aligned_cols=84  Identities=24%  Similarity=0.255  Sum_probs=74.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||.++. |+..+.. ....+++|++|||||+||...+.+..+++..++++++++|+||||++|.||+++|..
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIR-VKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhh-hccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            49999999999997 8876642 223468999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++++.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.7e-19  Score=125.63  Aligned_cols=83  Identities=27%  Similarity=0.340  Sum_probs=73.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||.++. |+..+...  ..+++|++|||||+||.+.+.+..+++.+++++++++|+||||++|.||+++|..
T Consensus        79 v~d~~~~~s~~~i~~~~~~~~~~--~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~  156 (164)
T d1yzqa1          79 VYDITNVNSFQQTTKWIDDVRTE--RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  156 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             eeccccccchhhhHhhHHHHHHh--cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            48999999999997 88776322  2358999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      |++.+.
T Consensus       157 i~~~l~  162 (164)
T d1yzqa1         157 VAAALP  162 (164)
T ss_dssp             HHHHSC
T ss_pred             HHHhhC
Confidence            998763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=126.13  Aligned_cols=89  Identities=26%  Similarity=0.461  Sum_probs=79.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||..+. |+..+. .......+|++|||||+||...+.|+.+++.+++++++++|+||||++|.||+++|..
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~  172 (186)
T d2f7sa1          94 MFDLTSQQSFLNVRNWMSQLQ-ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET  172 (186)
T ss_dssp             EEETTCHHHHHHHHHHHHTCC-CCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred             EEeccccccceeeeeccchhh-hhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            59999999999997 987763 2334467899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.+++.+
T Consensus       173 l~~~i~~k~~~  183 (186)
T d2f7sa1         173 LLDLIMKRMEQ  183 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999876543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-18  Score=123.54  Aligned_cols=84  Identities=26%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~  137 (177)
                      +.|++++.||+++. |+..+.+ ....+++|++|||||+||...+.++.+++..+++++ +++|+||||++|.||+++|.
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~-~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILR-VKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHH-hcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            48999999999997 9877642 233468999999999999998999999999999885 68999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         138 AITNLVL  144 (177)
Q Consensus       138 ~~~~~~~  144 (177)
                      .+++.|.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998774

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.7e-18  Score=121.71  Aligned_cols=84  Identities=26%  Similarity=0.241  Sum_probs=73.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||+++. |+..+.+ ....+++|++|||||+||. .+.++.+++..+++.++++|+||||++|.||+++|..
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKR-VKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHH-hcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            58999999999998 9987743 3334579999999999996 4678899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.6e-18  Score=124.02  Aligned_cols=82  Identities=20%  Similarity=0.292  Sum_probs=69.9

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|+|+++||+++.  |+..+. .  ..+++|++|||||+||.+            .|.|+.+++.++|++++ +.|+||
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~-~--~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELK-E--YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHH-H--HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             ccccchHHHHHHHHHHHHHHHH-h--cCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            59999999999885  554442 2  235899999999999964            57899999999999998 689999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ||++|.||+++|..+++.++
T Consensus       164 SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-18  Score=124.47  Aligned_cols=83  Identities=31%  Similarity=0.391  Sum_probs=73.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||.++. |...+.  ....+++|++|||||+||..++.|+.+++..+++.++++|+||||++|.||+++|..
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQ--RQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHH--HHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhh--hccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHH
Confidence            48999999999997 766553  233468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      |++.+.
T Consensus       163 l~~~i~  168 (170)
T d1r2qa_         163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            988664

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.3e-18  Score=122.54  Aligned_cols=85  Identities=24%  Similarity=0.291  Sum_probs=75.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|++++.||.++. |+..+.  ......+|++|||||+|+...+.|+.+++..+++.++++|++|||++|.||+++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~--~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIE--QYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHH--HHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eeecccchhhhhhhhhhhhhc--ccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            58999999999997 876653  223357899999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      ++++++.+
T Consensus       162 l~~~l~~~  169 (171)
T d2ew1a1         162 LACRLISE  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.5e-18  Score=121.26  Aligned_cols=82  Identities=27%  Similarity=0.382  Sum_probs=73.3

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+.  ......+|++|||||+||...+.+..+++..++++++++|+||||++|.||+++|..
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDAR--NLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHH--HHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHH--hhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            59999999999997 877663  223357899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1416         139 ITNLV  143 (177)
Q Consensus       139 ~~~~~  143 (177)
                      +++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.1e-18  Score=124.24  Aligned_cols=83  Identities=17%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEec
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFETS  125 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~S  125 (177)
                      ++|+++++||+++. |+......  ..+++|++|||||+||..            .+.|+.+++..+|++++ ++|+|||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~--~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECS  158 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH--HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECC
T ss_pred             ccccchHHHHHHHHHHHHHHHhh--cCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEe
Confidence            59999999999995 54333222  235799999999999853            45699999999999965 7899999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q psy1416         126 AKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       126 ak~~~~v~~~f~~~~~~~~  144 (177)
                      |++|.||+++|..+++.++
T Consensus       159 Ak~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         159 ALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             TTTCTTHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999987764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=6.3e-18  Score=121.24  Aligned_cols=88  Identities=31%  Similarity=0.384  Sum_probs=74.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCC-CccCHHHHHHHHHHcC-CcEEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQK-KVVLTEDAQRFANQMG-IQLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~-~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~  134 (177)
                      ++|++++.||..+. |+.++.....  ....+|++|||||+||.+. +.++.+++.++++.++ ++|+||||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            48999999999997 9987632222  2357899999999999864 5588999999999986 7899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         135 MFMAITNLVLRSK  147 (177)
Q Consensus       135 ~f~~~~~~~~~~~  147 (177)
                      +|..+++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.2e-18  Score=121.74  Aligned_cols=83  Identities=25%  Similarity=0.314  Sum_probs=69.7

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|+++++||+++.  |+..+. ..  .+++|++|||||+|+..            .+.|+.+++..+|++++ .+|+||
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~-~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  156 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVK-HF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC  156 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHH-HH--STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             hcccchhHHHHHHHHHHHHHHH-Hh--CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEe
Confidence            59999999999986  444332 22  35799999999999964            35689999999999998 579999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ||++|.||+++|+.+++.+++
T Consensus       157 SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         157 SAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhC
Confidence            999999999999999998863

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=119.07  Aligned_cols=85  Identities=28%  Similarity=0.283  Sum_probs=72.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhh--ccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIY--CWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~--~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++++.||+.+. |++++....  ...+++|++|||||+||.+ |.|+.+++..++++++ ++|+||||++|.||+++
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            48999999999997 998764322  2235799999999999964 7899999999999875 89999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         136 FMAITNLVLR  145 (177)
Q Consensus       136 f~~~~~~~~~  145 (177)
                      |..+++.++.
T Consensus       164 f~~l~~~il~  173 (174)
T d1wmsa_         164 FEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.9e-17  Score=118.35  Aligned_cols=84  Identities=31%  Similarity=0.487  Sum_probs=74.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++.+||..+. |+..+.  ....+.+|++|||||+|+...+.|+.+++..++++++++|+||||++|.||+++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIK--TYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHH--HHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhh--cccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            58999999999997 765542  233457899999999999998999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      +++.+++
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.6e-17  Score=118.06  Aligned_cols=87  Identities=26%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||.++. |+..+..  ....++|++|||||+|+...+.+..+++..+++.++++|+|+||++|.||+++|..
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARM--LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEecccchhHHHHhhhhccccc--ccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            58999999999997 8766532  22358999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         139 ITNLVLRSKK  148 (177)
Q Consensus       139 ~~~~~~~~~~  148 (177)
                      +++.+++++.
T Consensus       162 l~~~i~~~~~  171 (174)
T d2bmea1         162 CARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=118.70  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=69.4

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||+++. |+..+...   .+++|++|||||+||...+..  +++..++..++++||||||++|.||+++|..
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~---~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  156 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  156 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHH---HCSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhc---cCCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            59999999999998 98776422   247999999999999876543  4566889999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1416         139 ITNLVLR  145 (177)
Q Consensus       139 ~~~~~~~  145 (177)
                      |++.++.
T Consensus       157 l~~~l~~  163 (170)
T d1i2ma_         157 LARKLIG  163 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcc
Confidence            9998874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.8e-17  Score=115.45  Aligned_cols=86  Identities=29%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||..+. |+..+...  ..+++|++|||||+||.+.+.+..+.+..++..++.+|+||||++|.||+++|..
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~--~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHh--cCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            58999999999997 88776322  2357999999999999988888888899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      +++.+.+..
T Consensus       161 l~~~i~~~~  169 (175)
T d2f9la1         161 ILTEIYRIV  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2e-17  Score=119.51  Aligned_cols=84  Identities=19%  Similarity=0.111  Sum_probs=69.7

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEec
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFETS  125 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~S  125 (177)
                      ++|+++++||+++. |+....  ....+++|++|||||+|+..            .+.|+.+++..+|++++ ..|+|||
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~--~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~S  157 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEI--QEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  157 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHH--HHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             eeecccCCCHHHHHHHHHHHH--hccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEe
Confidence            59999999999986 443332  22235899999999999853            56799999999999987 5799999


Q ss_pred             CCCCCC-HHHHHHHHHHHHHH
Q psy1416         126 AKDNIN-VEEMFMAITNLVLR  145 (177)
Q Consensus       126 ak~~~~-v~~~f~~~~~~~~~  145 (177)
                      |++|.| |+++|..+++.+++
T Consensus       158 Ak~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         158 ALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcCHHHHHHHHHHHHhc
Confidence            999985 99999999998875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-16  Score=114.79  Aligned_cols=91  Identities=20%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhh-ccCCCCcEEEEeeCCCCc--CCCccCHHHHHHHHHH-cCCcEEEecCCCCCCHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIY-CWLFPSGLRLVGNKNDDP--QKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEE  134 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~-~~~~~~~~ilvgnK~Dl~--~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~~v~~  134 (177)
                      +.|+++++||+++. |+..+...+ .....+|++|||||.|+.  ..+.|+.+++..++.+ ++++|+||||++|.||++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            59999999999997 887763222 233678999999988874  4678999999999765 578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy1416         135 MFMAITNLVLRSKKEQ  150 (177)
Q Consensus       135 ~f~~~~~~~~~~~~~~  150 (177)
                      +|..+++.++....++
T Consensus       157 ~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999998876543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.5e-17  Score=117.81  Aligned_cols=82  Identities=17%  Similarity=0.250  Sum_probs=68.2

Q ss_pred             ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcC-CcEEEe
Q psy1416          60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMG-IQLFET  124 (177)
Q Consensus        60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~  124 (177)
                      ++|+++++||+++.  |+..+. .  ...++|++|||||+||...            +.+...++..+|+.++ +.|+||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~-~--~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVR-H--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHH-H--HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeccchHHHHHHHHHHHHHHHH-H--hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            59999999999995  544442 2  2357999999999998543            3467789999999988 789999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q psy1416         125 SAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus       125 Sak~~~~v~~~f~~~~~~~~  144 (177)
                      ||++|.||+++|..+++.++
T Consensus       160 SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=8.3e-17  Score=114.91  Aligned_cols=82  Identities=29%  Similarity=0.398  Sum_probs=70.9

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC---CCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ---KKVVLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++++.||.++. |+....  .......|+++||||+|+.+   .|.|+.+++.++++.++++|+|+||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~  159 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHH--HHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhc--cccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            59999999999997 775542  22345789999999999854   4789999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         136 FMAITNLV  143 (177)
Q Consensus       136 f~~~~~~~  143 (177)
                      |..|+++|
T Consensus       160 F~~i~~~i  167 (170)
T d1ek0a_         160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHh
Confidence            99998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=4.8e-16  Score=112.30  Aligned_cols=90  Identities=30%  Similarity=0.302  Sum_probs=73.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-cCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|+++..||.++. |+.++.....  ...++|++|||||+||.+ +.+..+++..++.. ++++|+||||++|.||+++
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            58899999999997 9987633222  234689999999999976 45777777777755 5789999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy1416         136 FMAITNLVLRSKKEQ  150 (177)
Q Consensus       136 f~~~~~~~~~~~~~~  150 (177)
                      |..+++.+++++...
T Consensus       160 f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         160 FQTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccc
Confidence            999999998876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=4.6e-16  Score=111.39  Aligned_cols=86  Identities=29%  Similarity=0.360  Sum_probs=71.1

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+..+.  .....++|++|||||.|+...+.+..+++..++..++++|+||||++|.||+++|..
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIE--EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHH--HHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhh--hhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            58999999999997 776663  233457999999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         139 ITNLVLRSK  147 (177)
Q Consensus       139 ~~~~~~~~~  147 (177)
                      |++.+.+++
T Consensus       163 l~~~i~~k~  171 (173)
T d2fu5c1         163 LARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999997664

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-16  Score=111.20  Aligned_cols=83  Identities=31%  Similarity=0.462  Sum_probs=73.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||..+. |+..+.  .......|++|||||+|+..++.|+.+++..+++.++++|+|+||++|.||+++|..
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  163 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIH--EYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  163 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHH--HHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhh--hccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            58999999999997 765542  222357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1416         139 ITNLVL  144 (177)
Q Consensus       139 ~~~~~~  144 (177)
                      +++.+.
T Consensus       164 l~~~i~  169 (170)
T d2g6ba1         164 IAKELK  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHcC
Confidence            998874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.2e-15  Score=111.28  Aligned_cols=88  Identities=30%  Similarity=0.362  Sum_probs=77.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|+++++||..+. |...+.  .....++|++|||||+|+.+.+.+..+++..++..+++.|+|+||++|.||+++|..
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~--~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEID--RYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHH--HHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhh--hcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            48999999999997 766553  223468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1416         139 ITNLVLRSKKE  149 (177)
Q Consensus       139 ~~~~~~~~~~~  149 (177)
                      +++.+.+....
T Consensus       163 l~~~i~~~~~~  173 (194)
T d2bcgy1         163 MARQIKESMSQ  173 (194)
T ss_dssp             HHHHHHHHCCH
T ss_pred             HHHHHHHHhhh
Confidence            99999876544

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=102.86  Aligned_cols=85  Identities=24%  Similarity=0.335  Sum_probs=74.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      +.|++++.||..+. |+.++. ........|+++++||.|+. .+.|..+++..+++++++.|+|+||++|.||+++|..
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~-~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELE-TYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHT-TCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhc-ccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            48999999999997 887763 23334578999999999975 4788999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      +++.+++.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99998854

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.44  E-value=8.9e-15  Score=105.24  Aligned_cols=84  Identities=12%  Similarity=0.067  Sum_probs=62.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHH-----HHHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQ-----RFANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~-----~~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++.||..+. |+..+.. .....+.|++|||||+||.+.  ++.++..     ..+...++.|++|||++|+||+
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~-~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQ-EEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTT-SSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EeeecccccchhHHHHHHHHHH-hhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            48999999999886 7765432 223357899999999999743  2333332     2334445689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLRS  146 (177)
Q Consensus       134 ~~f~~~~~~~~~~  146 (177)
                      ++|..|++.+.++
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T d1moza_         168 EGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999988765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.8e-13  Score=96.85  Aligned_cols=84  Identities=29%  Similarity=0.467  Sum_probs=71.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA  138 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  138 (177)
                      ++|+++++||+++. |+..+.  .......|++++++|.|+.. +.+..+++..++.+++++|++|||++|.||+++|..
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~  157 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVN--EHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  157 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHH--HHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhh--ccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHH
Confidence            48999999999997 765543  22335788999999999864 567889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         139 ITNLVLRS  146 (177)
Q Consensus       139 ~~~~~~~~  146 (177)
                      |++.+.++
T Consensus       158 l~~~i~~k  165 (166)
T d1g16a_         158 LAKLIQEK  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.34  E-value=7.9e-14  Score=99.40  Aligned_cols=80  Identities=14%  Similarity=-0.047  Sum_probs=58.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|++++.||..+. |+..+. ......++|++|||||+||.+...  ..+..+     ++....+.|++|||++|+||+
T Consensus        90 v~d~~d~~s~~~~~~~~~~~~-~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~  166 (176)
T d1fzqa_          90 VIDSADRKRFEETGQELTELL-EEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (176)
T ss_dssp             EEETTCGGGHHHHHHHHHHHT-TCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eeccccccchhhhhhhhhhhh-hhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence            58999999999986 665542 222235789999999999975432  222222     223345679999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         134 EMFMAITNL  142 (177)
Q Consensus       134 ~~f~~~~~~  142 (177)
                      ++|..|++.
T Consensus       167 e~~~~l~~~  175 (176)
T d1fzqa_         167 DGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.32  E-value=1.7e-13  Score=97.65  Aligned_cols=83  Identities=10%  Similarity=-0.098  Sum_probs=59.0

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---cCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|+++.++|.++. |+...... ....+.|++|||||+||.+...   +....+...+...++.|++|||++|+||+++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~-~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhh-cccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            48999999999996 76554322 2235789999999999975321   2222222233334567999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         136 FMAITNLV  143 (177)
Q Consensus       136 f~~~~~~~  143 (177)
                      |..|...+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.29  E-value=1.2e-12  Score=92.20  Aligned_cols=83  Identities=13%  Similarity=0.014  Sum_probs=59.2

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|+++..+|.... |+.... ......++|++|||||+||.+.+.+  ++.....     ...++.|++|||++|.||+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  152 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLL-VEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLL  152 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHH-TCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eeecccchhHHHHHHhhhhhh-hhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHH
Confidence            58999999998885 443332 2222357999999999999865443  3332221     1224579999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1416         134 EMFMAITNLVLR  145 (177)
Q Consensus       134 ~~f~~~~~~~~~  145 (177)
                      ++|..|++.+..
T Consensus       153 e~~~~l~~~i~~  164 (165)
T d1ksha_         153 PGIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999988753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.27  E-value=2.5e-13  Score=95.93  Aligned_cols=82  Identities=12%  Similarity=0.014  Sum_probs=58.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---cCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      +.|++++.+|..+. |+..+... ...+++|++|||||.||.+...   +....+..+++..++.|+|+||++|.||+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ccccccccccchhhhhhhhhhhh-hcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            58899999999987 76655322 2235799999999999975321   1111222223344568999999999999999


Q ss_pred             HHHHHHH
Q psy1416         136 FMAITNL  142 (177)
Q Consensus       136 f~~~~~~  142 (177)
                      |..|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.26  E-value=2.6e-13  Score=94.55  Aligned_cols=83  Identities=13%  Similarity=-0.058  Sum_probs=61.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC---ccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK---VVLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~---~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      ++|++++.+|..+. |+.++. .......+|+++||||.|+.+..   ++....+..+++..++.|+++||++|+||+++
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~  152 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRML-AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHH-TCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             EEEecChHHHHHHHHHHHHHH-HhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHH
Confidence            58999999999996 766553 22233578999999999987532   22233333445556778999999999999999


Q ss_pred             HHHHHHHH
Q psy1416         136 FMAITNLV  143 (177)
Q Consensus       136 f~~~~~~~  143 (177)
                      |..|++++
T Consensus       153 ~~~l~~~l  160 (160)
T d1r8sa_         153 LDWLSNQL  160 (160)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998753

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.11  E-value=1e-11  Score=86.81  Aligned_cols=85  Identities=15%  Similarity=-0.011  Sum_probs=59.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---cCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGIQLFETSAKDNINVEEM  135 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  135 (177)
                      ..|+++..++.... |+.... ........|+++|+||.|+.....   +....+..++...+++|+++||++|.||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAML-EEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHH-TCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhhcchhhhccchhhhhh-hhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            37778888887775 332221 222335789999999999976432   2223333445556688999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         136 FMAITNLVLR  145 (177)
Q Consensus       136 f~~~~~~~~~  145 (177)
                      |..|++.+.+
T Consensus       158 ~~~l~~~l~~  167 (169)
T d1upta_         158 MEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999987743

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.10  E-value=1.3e-11  Score=87.42  Aligned_cols=81  Identities=11%  Similarity=-0.029  Sum_probs=56.8

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH-----HHHcCCcEEEecCCCCCCHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF-----ANQMGIQLFETSAKDNINVE  133 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sak~~~~v~  133 (177)
                      +.|.++..+|.... |..... ........|++|||||+|+....  ...+....     +...+++|+++||++|+||+
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKML-AHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHH-TSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhhhhhhhh-hcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            47888899988775 333322 22233588999999999997543  22333322     22345679999999999999


Q ss_pred             HHHHHHHHHH
Q psy1416         134 EMFMAITNLV  143 (177)
Q Consensus       134 ~~f~~~~~~~  143 (177)
                      ++|..|++.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=3.9e-09  Score=72.66  Aligned_cols=79  Identities=15%  Similarity=0.089  Sum_probs=54.5

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH------------HHcCCcEEEecC
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA------------NQMGIQLFETSA  126 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a------------~~~~~~~~e~Sa  126 (177)
                      +.|+++..++.... |+.... ......+.|+++++||.|+...  +...+.....            ...++.|++|||
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA  150 (166)
T d2qtvb1          74 LVDAADPERFDEARVELDALF-NIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  150 (166)
T ss_dssp             EEETTCGGGHHHHHHHHHHHH-TCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBT
T ss_pred             eccccchhhhhhhhHHHHhhh-hhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeC
Confidence            57888888888875 554432 2223357899999999999643  3333332222            112346999999


Q ss_pred             CCCCCHHHHHHHHHH
Q psy1416         127 KDNINVEEMFMAITN  141 (177)
Q Consensus       127 k~~~~v~~~f~~~~~  141 (177)
                      ++|+||+|+|..|++
T Consensus       151 ~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         151 VMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTTBSHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHhC
Confidence            999999999998864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=3.8e-10  Score=78.58  Aligned_cols=72  Identities=15%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .|.++..++.... |...+.   ......|++||+||+||..+...       +.+..+.+++++||++|.||++++..|
T Consensus        88 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~~L~~~l  157 (161)
T d2gj8a1          88 VDGTTTDAVDPAEIWPEFIA---RLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVDVLRNHL  157 (161)
T ss_dssp             EETTTCCCCSHHHHCHHHHH---HSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHHHHHHHH
T ss_pred             eccccccchhhhhhhhhhhh---hcccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHHHHHHHH
Confidence            4556666666665 543332   12246899999999999654321       112245689999999999999999999


Q ss_pred             HHH
Q psy1416         140 TNL  142 (177)
Q Consensus       140 ~~~  142 (177)
                      ++.
T Consensus       158 ~~~  160 (161)
T d2gj8a1         158 KQS  160 (161)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.9e-10  Score=81.53  Aligned_cols=78  Identities=26%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc----------------cCHHHHHHHHHH----------cCC
Q psy1416          67 CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV----------------VLTEDAQRFANQ----------MGI  119 (177)
Q Consensus        67 ~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------------v~~~~~~~~a~~----------~~~  119 (177)
                      .+++++. |...+.  .....++|+++||||.|+...+.                -....+..+...          ..+
T Consensus        93 ~~~e~~~~~~~~l~--~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~  170 (200)
T d2bcjq2          93 RMEESKALFRTIIT--YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII  170 (200)
T ss_dssp             HHHHHHHHHHHHHH--CGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCE
T ss_pred             chHHHHHHHHHHHh--hhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCce
Confidence            3445555 665552  22336899999999999843221                122333333221          124


Q ss_pred             cEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416         120 QLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       120 ~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      .+++|||++|.||+++|..+.+.|++.
T Consensus       171 ~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         171 YSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            478999999999999999998888754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=5.6e-09  Score=73.99  Aligned_cols=56  Identities=16%  Similarity=0.100  Sum_probs=44.9

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL  144 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~  144 (177)
                      +.|+++|+||+|+..+..  .++..+.....+.++|.+||++|.||++++..+.+.+.
T Consensus       113 ~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         113 RRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             HSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            578999999999976432  23445556667889999999999999999998877764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.70  E-value=9e-09  Score=72.37  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=54.6

Q ss_pred             ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----------------CCcE
Q psy1416          60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----------------GIQL  121 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----------------~~~~  121 (177)
                      +.|+++..++.... ++.... ......+.|++|++||.|+..  .+...+........                 ++.|
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLM-TDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHH-TCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhh-cccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            47778888887774 332221 222235799999999999864  33444444333221                 2459


Q ss_pred             EEecCCCCCCHHHHHHHHHHH
Q psy1416         122 FETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus       122 ~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      +++||++|+||+|+|..|++.
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHh
Confidence            999999999999999998864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=1.2e-08  Score=72.50  Aligned_cols=87  Identities=23%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             ccccchhhhhcccc-hhhhhh---------hhhccCCCCcEEEEeeCCCCcCCC---------------ccCHHHHHHHH
Q psy1416          60 VCTVLNECAWLGCG-WMTICP---------IIYCWLFPSGLRLVGNKNDDPQKK---------------VVLTEDAQRFA  114 (177)
Q Consensus        60 ~~dit~~~Sf~~~~-w~~~~~---------~~~~~~~~~~~ilvgnK~Dl~~~~---------------~v~~~~~~~~a  114 (177)
                      +.|+++.++|..+. |...+.         -.......+|+++||||.|+...+               .....++..+.
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            58999999997764 432110         012233578999999999973211               11122222211


Q ss_pred             -HH----------cCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416         115 -NQ----------MGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       115 -~~----------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                       ..          ..+.|++|||++|.||+++|..+.+.|+++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence             11          123577999999999999999998877653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=1.3e-08  Score=71.42  Aligned_cols=58  Identities=21%  Similarity=0.160  Sum_probs=42.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +.|+++|+||+|+..+  ...+...++.+.....++++||++|.||++++..|.+.+.++
T Consensus       109 ~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         109 TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCC
Confidence            6789999999999632  122222233333345689999999999999999999877654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=1e-08  Score=72.49  Aligned_cols=55  Identities=24%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .+.|++||+||+|+....   .+....+.+..+ ..++++||++|.||+++|..+++.+
T Consensus       114 ~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         114 GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            368999999999996532   233344555554 5689999999999999999988654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=3.1e-08  Score=70.76  Aligned_cols=62  Identities=21%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             CCCCcEEEEeeCCCCcCCC----------------ccCHHHHHHHHHHc-----------CCcEEEecCCCCCCHHHHHH
Q psy1416          85 LFPSGLRLVGNKNDDPQKK----------------VVLTEDAQRFANQM-----------GIQLFETSAKDNINVEEMFM  137 (177)
Q Consensus        85 ~~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~~a~~~-----------~~~~~e~Sak~~~~v~~~f~  137 (177)
                      ..++|++|||||+||..++                .-..+.+.++....           .+.+++|||+++.||+++|.
T Consensus       109 ~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~  188 (200)
T d1zcba2         109 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR  188 (200)
T ss_dssp             GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred             hcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHH
Confidence            3589999999999984211                11234444443331           24467899999999999999


Q ss_pred             HHHHHHHHH
Q psy1416         138 AITNLVLRS  146 (177)
Q Consensus       138 ~~~~~~~~~  146 (177)
                      .+.+.|++.
T Consensus       189 ~v~d~i~~~  197 (200)
T d1zcba2         189 DVKDTILHD  197 (200)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988777654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=1.5e-07  Score=66.63  Aligned_cols=54  Identities=22%  Similarity=0.362  Sum_probs=41.6

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      .+.|+++|+||+|+.+.+    +....+.+..  +.+++.+||++|.||++++..+++.+
T Consensus       116 ~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         116 TERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             TTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             cCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            367899999999997532    2333444444  57899999999999999999988766

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.23  E-value=3.1e-07  Score=64.55  Aligned_cols=56  Identities=20%  Similarity=0.080  Sum_probs=40.6

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-------CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-------IQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-------~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +.|+++|+||+|+.....   .....++....       ..++.+||++|.||++++..+.+.+.+
T Consensus       121 ~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         121 DIPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCEEEEEECGGGCSCHH---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeeeehhhhHH---HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            689999999999764322   12222333322       248899999999999999999887765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.20  E-value=7.2e-07  Score=62.91  Aligned_cols=59  Identities=15%  Similarity=0.119  Sum_probs=41.0

Q ss_pred             CCcEEEEeeCCCCcCCCccC--HHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      ++|+++|.||+|+.....+.  .+....+.+.    .+.+++.+||++|+||++++..+...+.+
T Consensus       111 ~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         111 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            68999999999997532211  1111222222    13579999999999999999999877654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=2.3e-06  Score=60.14  Aligned_cols=57  Identities=19%  Similarity=0.068  Sum_probs=42.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ..|+|+|+||+|+...+.....+..+...+.     ..+++.+||++|.||+++|..|.+.+
T Consensus       120 ~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         120 GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6799999999998755544444444433332     35799999999999999999885544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=5.3e-07  Score=64.23  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=40.7

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      +.|+++|+||+|+.....+ .+....+.+.    ...+++.+||++|.||+++|..+.+.+
T Consensus       134 ~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         134 GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            6799999999998654332 1222223333    335789999999999999999988765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=3.5e-06  Score=57.64  Aligned_cols=54  Identities=19%  Similarity=0.051  Sum_probs=39.5

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      ...++++++||+|+.++.  ..++... ....+.+++++||++|.||+++|..+.++
T Consensus       106 ~~~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         106 KNKRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             TTSSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             ccccceeeeeeccccchh--hhHHHHH-HhCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            367899999999997643  2332221 12234689999999999999999988653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=5e-06  Score=57.85  Aligned_cols=58  Identities=26%  Similarity=0.279  Sum_probs=43.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ...|+++|.||.|+...+.........+..+++ .+++++||++|.||++++..+++.+
T Consensus       112 ~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         112 GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            356889999999987654333344455555555 5799999999999999999887654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.85  E-value=9.9e-07  Score=64.38  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416         121 LFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus       121 ~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +++|||.++.||+.+|..+...|++.
T Consensus       191 ~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         191 PHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             EEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             eeecceeccHHHHHHHHHHHHHHHHH
Confidence            56899999999999999998888765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=6e-05  Score=52.09  Aligned_cols=55  Identities=9%  Similarity=0.026  Sum_probs=36.8

Q ss_pred             CCcEEEEeeCCCCcCCCccC--HHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITN  141 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~  141 (177)
                      ..++++|+||+|+.+.....  .+...+....+  ..+++.+||++|.||++++..|..
T Consensus       127 ~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~  185 (188)
T d1puia_         127 NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  185 (188)
T ss_dssp             TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            57899999999986532111  11212222222  246899999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.43  E-value=4.9e-05  Score=54.32  Aligned_cols=55  Identities=24%  Similarity=0.356  Sum_probs=37.1

Q ss_pred             CcEEEEeeCCCCcCCCccC--HHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVL--TEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      .|+|++.||+||.+.....  ......+....   +++++.+||++|.||++++..+...
T Consensus       141 ~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         141 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            4789999999997532211  11222222222   3679999999999999998877654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.00027  Score=50.06  Aligned_cols=43  Identities=12%  Similarity=-0.058  Sum_probs=27.4

Q ss_pred             cccchhhhhc-ccc-hhhhh-hhhhccCCCCcEEEEeeCCCCcCCC
Q psy1416          61 CTVLNECAWL-GCG-WMTIC-PIIYCWLFPSGLRLVGNKNDDPQKK  103 (177)
Q Consensus        61 ~dit~~~Sf~-~~~-w~~~~-~~~~~~~~~~~~ilvgnK~Dl~~~~  103 (177)
                      .|+++..++. ... |+..+ .........+|++||+||+||.+.+
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            6777777753 332 54333 2233333578999999999997644

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.31  E-value=0.00011  Score=53.29  Aligned_cols=26  Identities=15%  Similarity=0.255  Sum_probs=21.8

Q ss_pred             cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416         120 QLFETSAKDNINVEEMFMAITNLVLR  145 (177)
Q Consensus       120 ~~~e~Sak~~~~v~~~f~~~~~~~~~  145 (177)
                      +++.+||++|.||++++..+.....+
T Consensus       193 ~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         193 SIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            58899999999999999887765543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.30  E-value=6.5e-05  Score=53.17  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             CcEEEEeeCCCCcCCCcc--CHHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVV--LTEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNL  142 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~  142 (177)
                      .+++++-||+|+.+....  ..+....+....   .++|+.+||++|.||++++..+.+.
T Consensus       133 ~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         133 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999754221  122333333333   2579999999999999988877654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00027  Score=51.34  Aligned_cols=52  Identities=19%  Similarity=0.091  Sum_probs=36.4

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHHHHHH--cCCcEEEecCCCCCCHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ--MGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~--~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .+++.+||.||+||.++..  .+....+...  .+++.+.+||+++.+++++-..+
T Consensus        40 ~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          40 NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccccchhHhhHHHHh
Confidence            3789999999999965321  1222333332  34678999999999999886655

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.68  E-value=0.0023  Score=48.75  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=37.0

Q ss_pred             EEEEeeCCCCcCCCccCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          90 LRLVGNKNDDPQKKVVLTEDAQRFANQ----------MGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        90 ~ilvgnK~Dl~~~~~v~~~~~~~~a~~----------~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      =++|.||+|+.+...+.......+...          +..+.+.+||++|.||++++..+.+..
T Consensus       192 Di~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         192 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             heeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            389999999865432222222222222          446799999999999999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.54  E-value=0.0022  Score=45.76  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=21.8

Q ss_pred             CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416         118 GIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus       118 ~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      ..+++.+||++|+|+++++..+.+..
T Consensus       216 ~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         216 PVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999997776643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.77  E-value=0.007  Score=44.67  Aligned_cols=58  Identities=14%  Similarity=0.193  Sum_probs=40.1

Q ss_pred             CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416          87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS  146 (177)
Q Consensus        87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~  146 (177)
                      +-|++||.||+||.+...  .++-.++-+..+..++.+||+.+.++.++...+.+.+.+.
T Consensus        42 ~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          42 NKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhh
Confidence            458999999999975321  1222223344467899999999999988877776655544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.63  E-value=0.00072  Score=49.21  Aligned_cols=53  Identities=15%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             CCCcEEEEeeCCCCcCCCccCHHHHHH---HHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416          86 FPSGLRLVGNKNDDPQKKVVLTEDAQR---FANQMGIQLFETSAKDNINVEEMFMAI  139 (177)
Q Consensus        86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~---~a~~~~~~~~e~Sak~~~~v~~~f~~~  139 (177)
                      .+++.+||.||+||.++.. ..+....   .-...|++.+.+||+++.+++++-..+
T Consensus        40 ~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          40 NDIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             TTCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             cCCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence            3788999999999975421 1112222   234468999999999999998876544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0069  Score=46.09  Aligned_cols=55  Identities=18%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             cEEEEeeCCCCcCCCcc--CHHHHHHHHH-------HcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416          89 GLRLVGNKNDDPQKKVV--LTEDAQRFAN-------QMGIQLFETSAKDNINVEEMFMAITNLV  143 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~~v--~~~~~~~~a~-------~~~~~~~e~Sak~~~~v~~~f~~~~~~~  143 (177)
                      +=++|.||+|+......  ...+......       .+..+.+.|||++|.||++++..|.+..
T Consensus       194 aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         194 ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            33788899998753211  1111111111       2335799999999999999998887643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.99  E-value=0.003  Score=44.59  Aligned_cols=54  Identities=17%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             CcEEEEeeCCCCcCCCccC---HHHHHHHHHHcC-----CcEEEecCCCC----------CCHHHHHHHHHH
Q psy1416          88 SGLRLVGNKNDDPQKKVVL---TEDAQRFANQMG-----IQLFETSAKDN----------INVEEMFMAITN  141 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-----~~~~e~Sak~~----------~~v~~~f~~~~~  141 (177)
                      .|+|++.||+|+..+....   ..+...+....+     ++++.+||++|          +++.+++..+..
T Consensus       120 ~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             CCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             CcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            4788999999986532211   123344444444     56999999998          577777765543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.0082  Score=41.69  Aligned_cols=41  Identities=5%  Similarity=-0.107  Sum_probs=25.9

Q ss_pred             cchhhhhcccc-hhhhhhh--hhccCCCCcEEEEeeCCCCcCCC
Q psy1416          63 VLNECAWLGCG-WMTICPI--IYCWLFPSGLRLVGNKNDDPQKK  103 (177)
Q Consensus        63 it~~~Sf~~~~-w~~~~~~--~~~~~~~~~~ilvgnK~Dl~~~~  103 (177)
                      .++..++..+. |+..+..  ......++|++||+||+|+...+
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          84 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             TSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            34566666665 6643311  12233579999999999997643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.21  E-value=0.02  Score=40.90  Aligned_cols=48  Identities=21%  Similarity=0.124  Sum_probs=31.8

Q ss_pred             CCc-EEEEeeCCCCcCCCccC----HHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKVVL----TEDAQRFANQMG-----IQLFETSAKDNINVEE  134 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v~----~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~  134 (177)
                      +++ +|++-||+|+.+...-.    .++...+.+..+     ++|+.+||++|.||.+
T Consensus       141 gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         141 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             CCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            444 78999999997643211    123344555554     3688999999999843

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.01  E-value=0.037  Score=40.01  Aligned_cols=48  Identities=25%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             cEEEEeeCCCCcCCC--ccCH----HHHHHHHHHc-C------CcEEEecCCCCCCHHHHH
Q psy1416          89 GLRLVGNKNDDPQKK--VVLT----EDAQRFANQM-G------IQLFETSAKDNINVEEMF  136 (177)
Q Consensus        89 ~~ilvgnK~Dl~~~~--~v~~----~~~~~~a~~~-~------~~~~e~Sak~~~~v~~~f  136 (177)
                      +++++.||+|+....  +-..    ++...+.... +      ++|+.+||++|.||.+++
T Consensus       164 ~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         164 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             eEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            478899999996421  1001    1222222222 2      469999999999997654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.67  E-value=0.18  Score=36.03  Aligned_cols=48  Identities=19%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             CCc-EEEEeeCCCCcCCCccC----HHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q psy1416          87 PSG-LRLVGNKNDDPQKKVVL----TEDAQRFANQMG-----IQLFETSAKDNINVEE  134 (177)
Q Consensus        87 ~~~-~ilvgnK~Dl~~~~~v~----~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~  134 (177)
                      ++| +|++.||+|+.+...-.    .++...+....+     +.|+.+||+.|.|+-+
T Consensus       143 gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         143 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            454 78899999987532211    133444555544     5689999999998754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.78  E-value=0.19  Score=35.30  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             CcEEEEeeCCCCcCC--CccCH----HHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q psy1416          88 SGLRLVGNKNDDPQK--KVVLT----EDAQRFANQMG-----IQLFETSAKDNINVEE  134 (177)
Q Consensus        88 ~~~ilvgnK~Dl~~~--~~v~~----~~~~~~a~~~~-----~~~~e~Sak~~~~v~~  134 (177)
                      .++|++.||+|+...  ..-..    .+...+...++     ++|+.+||..|.||.+
T Consensus       142 ~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         142 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            468889999998642  11111    23333444443     4688999999999853