Psyllid ID: psy1420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccccccccccccEEEEEEccHHHHHHHHHcccccccccccccEEEEEccccccccccccccEEEEEcccccccccccccccccEEEEEEccccccHHHHHHHHHHccccccccccHHHcccccccccccccHHHccccccHHHHHHHHHHcccccccEEEccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHcccccccccEEEEEEcHHHcccccccccEEEEEEccccccccHEEEccccEEEEEEEcccccHHHHHHHHHHHHHEEEcHHcHEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEEEccccHEEEEEccccc
Coil and Loop (DISEMBL)
MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIfidrlgpthdtklldvaggtdpLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRqfpnqidipnprlrfleanaeelpiesdsysaYTIAFGIrnvtridkidipnprlrfleanaeelpiesdsysaYTIAFGIRNVTRIDKALSEAYRVLkpggrflcleFSHEEFKSMIEsagfqyvtyeNLTFGVVAIHSGFKL
Flexible Loop (DISEMBL)
MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEElpiesdsysaYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEelpiesdsysAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL
Low Complexity Region (SEG)
MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL
Disordered region (IsUnstruct)
*****YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHS****
Disordered Region (DISOPRED)
**LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL
Disordered Region (DISEMBL)
MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL
Disordered Region (DISPRO)
*KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q0P5A2	330	2-methoxy-6-polyprenyl-1,	yes	N/A	0.887	0.648	0.409	2e-43
Q5HYK3	327	2-methoxy-6-polyprenyl-1,	yes	N/A	0.887	0.654	0.406	6e-43
Q5RBK6	327	2-methoxy-6-polyprenyl-1,	yes	N/A	0.887	0.654	0.406	7e-43
Q9VYF8	301	2-methoxy-6-polyprenyl-1,	yes	N/A	0.755	0.604	0.362	2e-42
Q4G064	327	2-methoxy-6-polyprenyl-1,	yes	N/A	0.879	0.648	0.382	4e-41
Q5ZLL5	311	2-methoxy-6-polyprenyl-1,	yes	N/A	0.892	0.691	0.378	5e-41
Q4V7R3	310	2-methoxy-6-polyprenyl-1,	N/A	N/A	0.871	0.677	0.385	9e-41
Q9CXI0	327	2-methoxy-6-polyprenyl-1,	yes	N/A	0.879	0.648	0.389	1e-40
Q54VN2	314	2-methoxy-6-polyprenyl-1,	yes	N/A	0.854	0.656	0.351	5e-38
A9MCZ2	269	Ubiquinone/menaquinone bi	yes	N/A	0.746	0.669	0.368	5e-36

>sp|Q0P5A2|COQ5_BOVIN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Bos taurus GN=COQ5 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 143/283 (50%), Gaps = 69/283 (24%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +Y+VFE+VAK YD MND MS GIHR+WKD+ + ++ P   T+LLDVAGGT  +A   F  
Sbjct: 68  VYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMRPFPGTQLLDVAGGTGDIA---FRF 124

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID-IPNPRLRFLEANAEELPIE 123
             Y Q   Q      QL A Q   ++   E  R++ N+ D +    +   + N E L I 
Sbjct: 125 LNYVQAQHQRKQKR-QLRAQQNLSWE---EIARKYQNEEDSLGGSHVMVCDINKEMLKIG 180

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
                A     G                L ++  +AEELP + + +  YTIAFGIRNVT 
Sbjct: 181 KQKARAQGYKAG----------------LAWILGDAEELPFDDNKFDVYTIAFGIRNVTH 224

Query: 184 IDKALSEAYRVLKPGGRFLCLEF------------------------------------- 206
           ID+AL EA+RVLKPGGRFLCLEF                                     
Sbjct: 225 IDQALQEAHRVLKPGGRFLCLEFSQVNNPLLSRLYDVYSFQVIPVLGEVIAGDWKSYQYL 284

Query: 207 --------SHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                   S EEFK MIE AGFQ VTYENLT G+VAIHSGFKL
Sbjct: 285 VESIRQFPSQEEFKEMIEDAGFQKVTYENLTSGIVAIHSGFKL 327

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 1

>sp|Q5HYK3|COQ5_HUMAN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Homo sapiens GN=COQ5 PE=1 SV=2

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/283 (40%), Positives = 145/283 (51%), Gaps = 69/283 (24%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +Y+VFE+VAK YD MND MS GIHR+WKD+ + ++ P   T+LLDVAGGT  +A   F  
Sbjct: 68  VYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDIA---FRF 124

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID-IPNPRLRFLEANAEELPIE 123
             Y Q   Q      QL A Q   ++   E  +++ N+ D +   R+   + N E L + 
Sbjct: 125 LNYVQSQHQRKQKR-QLRAQQNLSWE---EIAKEYQNEEDSLGGSRVVVCDINKEMLKVG 180

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
                   +A G R              L ++  +AEELP + D +  YTIAFGIRNVT 
Sbjct: 181 KQK----ALAQGYR------------AGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTH 224

Query: 184 IDKALSEAYRVLKPGGRFLCLEF------------------------------------- 206
           ID+AL EA+RVLKPGGRFLCLEF                                     
Sbjct: 225 IDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYL 284

Query: 207 --------SHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                   S EEFK MIE AGF  VTYE+LT G+VAIHSGFKL
Sbjct: 285 VESIRRFPSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGFKL 327

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|Q5RBK6|COQ5_PONAB 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Pongo abelii GN=COQ5 PE=2 SV=1

 Score =  174 bits (440), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/283 (40%), Positives = 145/283 (51%), Gaps = 69/283 (24%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +Y+VFE+VAK YD MND MS GIHR+WKD+ + ++ P   T+LLDVAGGT  +A   F  
Sbjct: 68  VYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMRPLPGTQLLDVAGGTGDIA---FRF 124

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID-IPNPRLRFLEANAEELPIE 123
             Y Q   Q      QL A Q   ++   E  +++ N+ D +   R+   + N E L + 
Sbjct: 125 LNYVQSQHQRKQKR-QLRAQQNLSWE---EIAKEYQNEEDSLGGSRVVMCDINKEMLKVG 180

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
                   +A G R              L ++  +AEELP + D +  YTIAFGIRNVT 
Sbjct: 181 KQK----ALAQGYR------------AGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTH 224

Query: 184 IDKALSEAYRVLKPGGRFLCLEF------------------------------------- 206
           ID+AL EA+RVLKPGGRFLCLEF                                     
Sbjct: 225 IDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYL 284

Query: 207 --------SHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                   S EEFK MIE AGF  VTYE+LT G+VAIHSGFKL
Sbjct: 285 VESIRRFPSQEEFKEMIEDAGFHKVTYESLTSGIVAIHSGFKL 327

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|Q9VYF8|COQ5_DROME 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Drosophila melanogaster GN=coq5 PE=1 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 136/295 (46%), Gaps = 113/295 (38%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           ++EVFE VA SYD MNDAMS GIHR+WKD+F++RLGPTH  +LLD+AGGT  +       
Sbjct: 62  VHEVFEQVANSYDVMNDAMSLGIHRVWKDVFVERLGPTHGMRLLDMAGGTGDI------- 114

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQI-------------DIPNPRLR 111
                 +F+ +  +      Q +P    V  I Q    +              + N  + 
Sbjct: 115 ------TFRYLRYLNNQPNPQQRPSHVTVSDINQHMLNVGEERAKRLGLTTDQLSNCTVA 168

Query: 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSA 171
           +  A+AE+LP    S++AYTIAFGIRN T +DK+                          
Sbjct: 169 WQCADAEKLPFPDASFTAYTIAFGIRNCTHVDKV-------------------------- 202

Query: 172 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------- 208
                           LSEAYRVL+PGGRF+CLEFSH                       
Sbjct: 203 ----------------LSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQ 246

Query: 209 ----------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                                 E+FK MIE AGF  V+YENLTFGVV+IHSGFKL
Sbjct: 247 LLAGQWQAYQYLVESIRRFPKQEQFKQMIEQAGFDQVSYENLTFGVVSIHSGFKL 301

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|Q4G064|COQ5_RAT 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Rattus norvegicus GN=Coq5 PE=2 SV=1

 Score =  167 bits (424), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 143/285 (50%), Gaps = 73/285 (25%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLAN--LLF 62
           +Y+VF++VA+ YD MND MS GIHR WKD+ I ++ P   T+LLDVAGGT  +A   L +
Sbjct: 68  VYQVFQSVARKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLLDVAGGTGDIAFRFLSY 127

Query: 63  VLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID-IPNPRLRFLEANAEELP 121
           V   +++   + +     L    W+      E  R++ ++ D +    +   + N E L 
Sbjct: 128 VQTQHERKQRRQLRTRQNL---SWE------EIARKYQSKEDPLGGSLVMVCDINREMLK 178

Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 181
           +      A     G                L ++  +AEELP + D +  YTIAFGIRNV
Sbjct: 179 VGKQKALARGHTAG----------------LAWVLGDAEELPFDDDRFDVYTIAFGIRNV 222

Query: 182 TRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------------- 208
           T ID+AL EA+RVLKPGGRFLCLEFS                                  
Sbjct: 223 THIDRALQEAHRVLKPGGRFLCLEFSQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQ 282

Query: 209 ------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                       EEFK MIE AGFQ VTYE+LT G+VAIHSGFKL
Sbjct: 283 YLVESIRKFPNQEEFKDMIEDAGFQKVTYESLTSGIVAIHSGFKL 327

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|Q5ZLL5|COQ5_CHICK 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Gallus gallus GN=COQ5 PE=2 SV=1

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/283 (37%), Positives = 143/283 (50%), Gaps = 68/283 (24%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLA-NLLFV 63
           +Y+VFENVA+ YD MND+MS GIHR+WKDI + ++ P+  T L+DVAGGT  +A   L  
Sbjct: 51  IYQVFENVAEKYDVMNDSMSLGIHRVWKDILVHKMNPSPGTLLVDVAGGTGDIAFRFLNY 110

Query: 64  LRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123
           +R+  +   Q      Q ++  W+      +  +  P    + + ++   + N E L  +
Sbjct: 111 VRSVRERQLQQKLRHHQNLS--WQEISKSYQEEKSNP----LGDSQVVVCDINKEML--K 162

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
           +    A  + +              +  L ++  NAEEL  + D +  YTIAFGIRNVTR
Sbjct: 163 AGKQKAQHLGY--------------SEGLSWVLGNAEELHFDDDKFDVYTIAFGIRNVTR 208

Query: 184 IDKALSEAYRVLKPGGRFLCLEFSH----------------------------------- 208
           ID AL EAYRVLKPGGRFLCLEFSH                                   
Sbjct: 209 IDLALQEAYRVLKPGGRFLCLEFSHVSNPLLSRLYDLYSFQVIPVLGEVIAGDWKSYQYL 268

Query: 209 ----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                     EE K+MIE AGF  V Y+NL  G+VAIHSGFKL
Sbjct: 269 VESIRRFPPQEELKAMIEDAGFLKVDYQNLNSGIVAIHSGFKL 311

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|Q4V7R3|COQ5_XENLA 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Xenopus laevis GN=coq5 PE=2 SV=1

 Score =  167 bits (422), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 140/288 (48%), Gaps = 78/288 (27%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +Y+VFENVA +YD MNDAMS G+HR WKD  +  + PT   +LLD+AGGT  +       
Sbjct: 50  VYKVFENVAHNYDIMNDAMSLGVHRFWKDWLLQLMKPTPGMQLLDMAGGTGDI------- 102

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ-FPNQIDIPNPRLRFLEANAEELPIE 123
                 SF+ I      I  Q + +      IRQ    Q D+  P +     N EE  + 
Sbjct: 103 ------SFRFI----NYIRAQREKW------IRQELKFQQDLSWPDISKTYQNKEEGSLM 146

Query: 124 SD-----SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 178
                    +   +  G++   R+      +  L ++  +AEELP   D +  YTIAFGI
Sbjct: 147 GSRAVICDINKEMLKVGLQKSLRLGY----SEGLSWVAGDAEELPFGDDKFDVYTIAFGI 202

Query: 179 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH------------------------------ 208
           RNVT I++AL EAYRVLKPGGRFLCLEFSH                              
Sbjct: 203 RNVTHIEQALQEAYRVLKPGGRFLCLEFSHVNNPLLSKIYDVYSFQVIPVLGEVIAKDWK 262

Query: 209 ---------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                          EEFK+MIE AGF  V Y NLT GVVA+HSGFKL
Sbjct: 263 SYQYLVESIRRFPSQEEFKAMIEDAGFSKVNYHNLTSGVVAVHSGFKL 310

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|Q9CXI0|COQ5_MOUSE 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Mus musculus GN=Coq5 PE=2 SV=2

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/285 (38%), Positives = 141/285 (49%), Gaps = 73/285 (25%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLAN--LLF 62
           +Y+VFENVAK YD MND MS GIHR WKD+ I ++ P   T+LLD+AGGT  +A   L +
Sbjct: 68  VYQVFENVAKKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLLDMAGGTGDIAFRFLSY 127

Query: 63  VLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL-RFLEANAEELP 121
           V   + +   + +     L    W+      E  +++ N+ D     L    + N E L 
Sbjct: 128 VQAQHQRRQRRQLRTQQNL---SWE------EIAKKYQNEEDSLGGSLATVCDINREMLK 178

Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 181
           +            G                L ++  +AEELP + DS+  YTIAFGIRNV
Sbjct: 179 VGKQKALDQGHTAG----------------LAWVLGDAEELPFDDDSFDVYTIAFGIRNV 222

Query: 182 TRIDKALSEAYRVLKPGGRFLCLEF----------------------------------- 206
           T ID+AL EA+RVLKPGGRFLCLEF                                   
Sbjct: 223 THIDQALQEAHRVLKPGGRFLCLEFGQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQ 282

Query: 207 ----------SHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                     + E+FK MIE AGFQ VTYENLT G+VAIHSGFKL
Sbjct: 283 YLVESIRKFPNQEDFKDMIEDAGFQRVTYENLTTGIVAIHSGFKL 327

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|Q54VN2|COQ5_DICDI 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Dictyostelium discoideum GN=coq5 PE=3 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 138/282 (48%), Gaps = 76/282 (26%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
           +VF++V+ SYD MND MS GIHRLWKD  I+ L PT  + LLDVAGGT  ++      R 
Sbjct: 62  DVFDSVSSSYDLMNDVMSMGIHRLWKDELINTLNPTPGSHLLDVAGGTGDIS-----FRF 116

Query: 67  YDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126
            D+                      +  S   FPN     N     L++++  LP  +  
Sbjct: 117 LDK----------------------IKTSPNYFPNINKSNNGGGEVLKSSS--LPSSATV 152

Query: 127 Y--SAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
           +  +   +  G +        D  +P + +++ N+E+LP + ++++ YT++FGIRN T I
Sbjct: 153 FDINQSMLNEGKKRGLNKGYTDQSDPSIDWVQGNSEQLPFKDNTFNCYTVSFGIRNCTNI 212

Query: 185 DKALSEAYRVLKPGGRFLCLEFS------------------------------------- 207
           D+ L EAYRVLKPGGRFLCLEFS                                     
Sbjct: 213 DQVLREAYRVLKPGGRFLCLEFSQVPNPLLRFAYDQYSFNVIPIMGQLISGDRDSYSYLV 272

Query: 208 --------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    E F  MI+ AGF+ VTY+NLTFG+ +IHSGFKL
Sbjct: 273 ESIRKFPDQETFVQMIQDAGFKQVTYKNLTFGICSIHSGFKL 314

Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|A9MCZ2|UBIE_BRUC2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ubiE PE=3 SV=1

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/282 (36%), Positives = 128/282 (45%), Gaps = 102/282 (36%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKL--LDVAGGTDPLANLLFVL 64
           +VF  VAK YD MND MS G+HR+WKD  +  L P+       LDVAGGT  +A      
Sbjct: 43  DVFHKVAKRYDIMNDLMSAGMHRVWKDAMVAWLAPSKRPGWTSLDVAGGTGDIA------ 96

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                  F+++ V G+                             +  L+ N   L    
Sbjct: 97  -------FRIVEVSGR--------------------------QAHVTILDINGSML---- 119

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
                     G+     I K  I N  L F+EANAEELP E +S+ AYTIAFGIRNV  I
Sbjct: 120 ----------GVGRERAIKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIRNVPHI 167

Query: 185 DKALSEAYRVLKPGGRFLCLEFS------------------------------------- 207
           DKALSEAYRVLKPGGRFLCLEFS                                     
Sbjct: 168 DKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDEWSFRAIPRIGKMITGDADSYSYLV 227

Query: 208 --------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    ++F +MIE AGF+ V+Y N T G+ A+HSG+KL
Sbjct: 228 ESIRKFPKQQDFAAMIEKAGFERVSYRNFTGGIAALHSGWKL 269

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
125982397	305	GA15370 [Drosophila pseudoobscura pseudo	0.809	0.639	0.407	8e-49
195167225	305	GL15869 [Drosophila persimilis] gi|19410	0.809	0.639	0.407	1e-48
194895617	305	GG19515 [Drosophila erecta] gi|190649947	0.809	0.639	0.404	4e-47
322800053	296	hypothetical protein SINV_04718 [Solenop	0.800	0.652	0.414	4e-45
332019974	297	Ubiquinone biosynthesis methyltransferas	0.800	0.649	0.414	9e-45
443690590	327	hypothetical protein CAPTEDRAFT_183291 [	0.883	0.651	0.401	4e-44
195396439	291	GJ16746 [Drosophila virilis] gi|19414660	0.767	0.635	0.379	5e-44
383849455	290	PREDICTED: 2-methoxy-6-polyprenyl-1,4-be	0.792	0.658	0.408	2e-43
195048884	282	GH24114 [Drosophila grimshawi] gi|193893	0.755	0.645	0.372	3e-43
195133400	296	GI16372 [Drosophila mojavensis] gi|19390	0.755	0.614	0.369	3e-43

>gi|125982397|ref|XP_001355085.1| GA15370 [Drosophila pseudoobscura pseudoobscura] gi|54643397|gb|EAL32141.1| GA15370 [Drosophila pseudoobscura pseudoobscura]

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 144/282 (51%), Gaps = 87/282 (30%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           ++EVFE VA SYD MNDAMS GIHRLWKDIF++RLGPTH  +LLD+AGGT  +       
Sbjct: 66  VHEVFEQVANSYDMMNDAMSMGIHRLWKDIFVERLGPTHGMRLLDMAGGTGDI------- 118

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                 +F+ +  +      Q +P    +  I Q  + +D+   R R L    E+LP   
Sbjct: 119 ------TFRYLKYLANQANPQQRPSHVTISDINQ--HMLDVGRERARRLGLTEEQLP--- 167

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
                                   N ++ +  A+AE LP E  S++AYTIAFGIRN T +
Sbjct: 168 ------------------------NTKIAWQCADAERLPFEDASFNAYTIAFGIRNCTHV 203

Query: 185 DKALSEAYRVLKPGGRFLCLEFSH------------------------------------ 208
           DK LSEAYRVL+PGGRF+CLEFSH                                    
Sbjct: 204 DKVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQLLAGQWQAYQYLV 263

Query: 209 ---------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    E FK MIE AGF  V+YENLTFG+V+IHSGFKL
Sbjct: 264 ESIRRFPKQEAFKQMIEQAGFDMVSYENLTFGIVSIHSGFKL 305

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167225|ref|XP_002024434.1| GL15869 [Drosophila persimilis] gi|194107832|gb|EDW29875.1| GL15869 [Drosophila persimilis]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 144/282 (51%), Gaps = 87/282 (30%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           ++EVFE VA SYD MNDAMS GIHRLWKDIF++RLGPTH  +LLD+AGGT  +       
Sbjct: 66  VHEVFEQVANSYDMMNDAMSMGIHRLWKDIFVERLGPTHGMRLLDMAGGTGDI------- 118

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                 +F+ +  +      Q +P    +  I Q  + +D+   R R L    E+LP   
Sbjct: 119 ------TFRYLKYLANQANPQQRPSHVTISDINQ--HMLDVGRERARRLGLTEEQLP--- 167

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
                                   N ++ +  A+AE LP E  S++AYTIAFGIRN T +
Sbjct: 168 ------------------------NTKIAWQCADAERLPFEDASFNAYTIAFGIRNCTHV 203

Query: 185 DKALSEAYRVLKPGGRFLCLEFSH------------------------------------ 208
           DK LSEAYRVL+PGGRF+CLEFSH                                    
Sbjct: 204 DKVLSEAYRVLQPGGRFMCLEFSHLTNDTMQWLYDQYSFQVIPPMGQLLAGQWQAYQYLV 263

Query: 209 ---------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    E FK MIE AGF  V+YENLTFG+V+IHSGFKL
Sbjct: 264 ESIRRFPKQEPFKQMIEQAGFDMVSYENLTFGIVSIHSGFKL 305

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194895617|ref|XP_001978298.1| GG19515 [Drosophila erecta] gi|190649947|gb|EDV47225.1| GG19515 [Drosophila erecta]

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/282 (40%), Positives = 146/282 (51%), Gaps = 87/282 (30%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           ++EVFE VA SYD MNDAMS GIHR+WKD+F++RLGPTH  +LLD+AGGT  +       
Sbjct: 66  VHEVFEQVANSYDMMNDAMSLGIHRVWKDMFVERLGPTHGMRLLDMAGGTGDI------- 118

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                 +F+ +  +      Q +     V  I Q  + +D+   R       A+ L + +
Sbjct: 119 ------TFRYLRYLANQPNPQQRSSHVTVSDINQ--HMLDVGEER-------AKRLGLTT 163

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
           D  S  T+A+                      A+AE+LP +  S+SAYTIAFGIRN T +
Sbjct: 164 DQLSNCTVAWQC--------------------ADAEKLPFQDASFSAYTIAFGIRNCTHV 203

Query: 185 DKALSEAYRVLKPGGRFLCLEFSH------------------------------------ 208
           DK LSEAYRVL+PGGRF+CLEFSH                                    
Sbjct: 204 DKVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQLLAGQWQAYQYLV 263

Query: 209 ---------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    E+FK MIE AGF  V+YENLTFGVV+IHSGFKL
Sbjct: 264 ESIRRFPKQEQFKRMIEQAGFDQVSYENLTFGVVSIHSGFKL 305

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800053|gb|EFZ21159.1| hypothetical protein SINV_04718 [Solenopsis invicta]

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/282 (41%), Positives = 141/282 (50%), Gaps = 89/282 (31%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +Y VFENVA SYD MND +S GIHR+WKDIFI  LGPTH T LLD AGGT  +       
Sbjct: 59  VYTVFENVANSYDLMNDTLSLGIHRIWKDIFIQELGPTHGTHLLDSAGGTGDI------- 111

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                 +F+ I  +      Q         ++R      DI    L   +  A +L I  
Sbjct: 112 ------TFRYINFLKNTPNPQ---------NVRSHVTVCDINQHMLDVGKNRANKLGISQ 156

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
           DS                      N  + + + +AE+L    DS+SAYTIAFG+RNVTRI
Sbjct: 157 DS----------------------NYDITWKQEDAEKLTFPDDSFSAYTIAFGVRNVTRI 194

Query: 185 DKALSEAYRVLKPGGRFLCLEFSH------------------------------------ 208
           DK LSEAYRVL+PGGRFLCLEFSH                                    
Sbjct: 195 DKVLSEAYRVLQPGGRFLCLEFSHIDNKPIQWLYDQYSFQLIPVMGELIAGQWKAYQYLV 254

Query: 209 ---------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    E+FK+MIE AGF+ VTY+NLTFG+VAIHSGFKL
Sbjct: 255 ESIRRFPKQEDFKNMIEFAGFRNVTYQNLTFGMVAIHSGFKL 296

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019974|gb|EGI60434.1| Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial [Acromyrmex echinatior]

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/282 (41%), Positives = 140/282 (49%), Gaps = 89/282 (31%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +Y VFENVA SYD MNDAMS GIHR+WKDIF+  LGPTH T LLD AGGT  +       
Sbjct: 60  VYTVFENVANSYDMMNDAMSMGIHRIWKDIFVQELGPTHGTHLLDSAGGTGDI------- 112

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                 +F+ I      +     P+     ++R      DI    L   +     L +  
Sbjct: 113 ------TFRYI----NFLRNTPNPH-----NVRSHVTVCDINQHMLDVGQNRVSGLGLSG 157

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
           DS                      N  + + + +AE+L    DS+SAYTIAFGIRNVT I
Sbjct: 158 DS----------------------NYDIMWKQEDAEKLSFADDSFSAYTIAFGIRNVTHI 195

Query: 185 DKALSEAYRVLKPGGRFLCLEFSH------------------------------------ 208
           DK LSEAYRVL+PGGRFLCLEFSH                                    
Sbjct: 196 DKVLSEAYRVLQPGGRFLCLEFSHIDNKPLQWLYDQYSFQIIPVMGELIAGEWKAYQYLV 255

Query: 209 ---------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    E+FK+MIE AGF+ VTY+NLTFGVVAIHSGFKL
Sbjct: 256 ESIRRFPKQEDFKNMIEFAGFRNVTYQNLTFGVVAIHSGFKL 297

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443690590|gb|ELT92682.1| hypothetical protein CAPTEDRAFT_183291 [Capitella teleta]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 145/289 (50%), Gaps = 76/289 (26%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +++VF NVA SYD MNDAMS G+HRLWKD FI R  P   TKL+DVAGGT  +A      
Sbjct: 63  VHKVFHNVASSYDVMNDAMSAGVHRLWKDAFIQRFAPPPGTKLIDVAGGTGDIA------ 116

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                  F+ +  M +      +P         + P++I +      F E  +EE P  S
Sbjct: 117 -------FRFLNYMNKEHGTSSRPLDI------EIPSRIQMEG----FSEVQSEEDPTTS 159

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE-------ANAEELPIESDSYSAYTIAFG 177
            S +A+   F I N   +D+      RL F E        NAE LP++ + + AYTIAFG
Sbjct: 160 PSQNAHVTVFDI-NQAMLDEGKKKAERLGFTEDLSSWVCGNAECLPMDDNQFDAYTIAFG 218

Query: 178 IRNVTRIDKALSEAYRVLKPGGRFLCLEFS------------------------------ 207
           IRNVT I+K L+EAYRVLKPGGRF+CLEFS                              
Sbjct: 219 IRNVTHIEKVLTEAYRVLKPGGRFMCLEFSEVPNPVLRKIYDEYSFQVIPVMGQVIAGDW 278

Query: 208 ---------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                           E F +MI  AGF++V YENLTFGV AIHSG KL
Sbjct: 279 HSYQYLVESIRQFPNQETFATMIRDAGFKFVRYENLTFGVAAIHSGIKL 327

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|195396439|ref|XP_002056839.1| GJ16746 [Drosophila virilis] gi|194146606|gb|EDW62325.1| GJ16746 [Drosophila virilis]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 144/298 (48%), Gaps = 113/298 (37%)

Query: 2   KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLL 61
           +L ++EVFE VA+SYD MNDAMS GIHR+WKDIFI+RLGP H  +LLD+AGGT  +    
Sbjct: 49  ELKVHEVFEQVAQSYDLMNDAMSMGIHRVWKDIFIERLGPEHGMRLLDMAGGTGDI---- 104

Query: 62  FVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID-------------IPNP 108
                    SF+ +  + +    + +     V  I Q    +              +PN 
Sbjct: 105 ---------SFRYLKYLAKQPNTKQRESHVTVSDINQHMLNVGKERARQLGLTAERLPNA 155

Query: 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDS 168
            + +  A+AE+LP +SDS++AYTIAFGIRN T +DK+                       
Sbjct: 156 SIDWQCADAEKLPFKSDSFTAYTIAFGIRNCTHVDKV----------------------- 192

Query: 169 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------------------- 208
                              LSEAYRVL+PGGRF+CLEFSH                    
Sbjct: 193 -------------------LSEAYRVLQPGGRFMCLEFSHLNNETLQWLYDQYSFQVIPP 233

Query: 209 -------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                                    E+FKSMIE AGF +VTYENLTFGVV+IHSGFKL
Sbjct: 234 MGQLLAGQWHAYQYLVESIRRFPRQEQFKSMIEQAGFAHVTYENLTFGVVSIHSGFKL 291

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849455|ref|XP_003700360.1| PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Megachile rotundata]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/284 (40%), Positives = 141/284 (49%), Gaps = 93/284 (32%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLA--NLLF 62
           +Y VFE VA SYD MNDAMS GIHR+WKDIFI RLGPTH +KLLD AGGT  +    L +
Sbjct: 53  VYTVFEKVADSYDQMNDAMSLGIHRIWKDIFIQRLGPTHGSKLLDSAGGTGDITFRYLNY 112

Query: 63  VLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122
           +    +  +F+    +  +     K  +  V + RQ    +D  N  + + E NAEELP 
Sbjct: 113 LKNTPNPQNFKSSVTVCDINENMLKVGK--VRAERQ--GWLDQQNIEIDWQECNAEELPF 168

Query: 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT 182
           ++DSY+AYTIAFGIRNVT IDK+                                     
Sbjct: 169 DNDSYTAYTIAFGIRNVTHIDKV------------------------------------- 191

Query: 183 RIDKALSEAYRVLKPGGRFLCLEFSH---------------------------------- 208
                L+EAYRVL PGGRF+CLEFSH                                  
Sbjct: 192 -----LAEAYRVLTPGGRFMCLEFSHVNNDIFRWVYDQYSFQIIPVLGTLIAGEWQAYQY 246

Query: 209 -----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                      E+FK MIE AGF+ VTYENLT G+VAIHSGFKL
Sbjct: 247 LVESIRKFPKQEDFKEMIEEAGFRNVTYENLTCGIVAIHSGFKL 290

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195048884|ref|XP_001992610.1| GH24114 [Drosophila grimshawi] gi|193893451|gb|EDV92317.1| GH24114 [Drosophila grimshawi]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 143/295 (48%), Gaps = 113/295 (38%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +++VFE VA+SYDTMNDAMS GIHR+WKDIFI+RLGPTH  +LLD+AGGT  +       
Sbjct: 43  VHQVFEQVAQSYDTMNDAMSLGIHRVWKDIFIERLGPTHGMRLLDMAGGTGDI------- 95

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID-------------IPNPRLR 111
                 SF+ +  + +    Q +     +  I Q    +              + N  + 
Sbjct: 96  ------SFRYLKYLEKQPNHQGRKSHVTISDINQHMLNVGEERARQQGLTAERLSNSSID 149

Query: 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSA 171
           +  A+AE+LP +SDS++AYTIAFGIRN T +DK+                          
Sbjct: 150 WQCADAEKLPFQSDSFTAYTIAFGIRNCTHVDKV-------------------------- 183

Query: 172 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------- 208
                           LSEAYRVL+PGGRF+CLEFSH                       
Sbjct: 184 ----------------LSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQ 227

Query: 209 ----------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                                 ++FKSMIE+AGF + TYENLTFGVV+IHSGFKL
Sbjct: 228 LLAGQWQAYQYLVESIRRFPRQDQFKSMIENAGFVHATYENLTFGVVSIHSGFKL 282

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133400|ref|XP_002011127.1| GI16372 [Drosophila mojavensis] gi|193907102|gb|EDW05969.1| GI16372 [Drosophila mojavensis]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 143/295 (48%), Gaps = 113/295 (38%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           ++EVF+ VA+SYD MNDAMS GIHR+WKDIF++RLGP H  +LLD+AGGT  +       
Sbjct: 57  VHEVFQQVAQSYDLMNDAMSMGIHRVWKDIFVERLGPEHGMRLLDMAGGTGDI------- 109

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID-------------IPNPRLR 111
                 SF+ +  + ++   + +     V  I Q    +              +PN  + 
Sbjct: 110 ------SFRYLKYLAKMPNPKQRESHVTVSDINQHMLNVGEERARQLGLTADRLPNASIA 163

Query: 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSA 171
           +  A+AE+LP +SD+Y+AYTIAFGIRN T +DK+                          
Sbjct: 164 WQCADAEKLPFKSDTYTAYTIAFGIRNCTHVDKV-------------------------- 197

Query: 172 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------- 208
                           LSEAYRVL+PGGRF+CLEFSH                       
Sbjct: 198 ----------------LSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQ 241

Query: 209 ----------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                                 +EFKSMIE AGF +V+YENLTFGVV+IHSGFKL
Sbjct: 242 LLAGQWHAYQYLVESIRRFPRQDEFKSMIERAGFSHVSYENLTFGVVSIHSGFKL 296

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
UNIPROTKB|F1RJK0	329	COQ5 "Uncharacterized protein"	0.526	0.386	0.45	1.3e-36
UNIPROTKB|F1NBB0	311	COQ5 "2-methoxy-6-polyprenyl-1	0.236	0.183	0.754	1.7e-36
UNIPROTKB|F1NXQ7	318	COQ5 "2-methoxy-6-polyprenyl-1	0.236	0.179	0.754	1.7e-36
MGI|MGI:1098643	327	Coq5 "coenzyme Q5 homolog, met	0.526	0.388	0.435	2.2e-36
UNIPROTKB|Q0P5A2	330	COQ5 "2-methoxy-6-polyprenyl-1	0.526	0.384	0.435	5.7e-36
UNIPROTKB|Q5ZLL5	311	COQ5 "2-methoxy-6-polyprenyl-1	0.236	0.183	0.736	1.5e-35
FB|FBgn0030460	301	CG2453 [Drosophila melanogaste	0.950	0.760	0.407	1.5e-35
UNIPROTKB|E2RF28	327	COQ5 "Uncharacterized protein"	0.526	0.388	0.421	5e-35
UNIPROTKB|Q5HYK3	327	COQ5 "2-methoxy-6-polyprenyl-1	0.526	0.388	0.428	5e-35
RGD|1310857	327	Coq5 "coenzyme Q5 homolog, met	0.526	0.388	0.435	8.1e-35

UNIPROTKB|F1RJK0 COQ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 63/140 (45%), Positives = 80/140 (57%)

Query:   110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-----DIPNPRLRFL--EANAEEL 162
             L ++  +AEELP + D +  YTIAFGIRNVT ID+       +  P  RFL  E +    
Sbjct:   195 LDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCLEFSQVNN 254

Query:   163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-SHEEFKSMIESAGFQ 221
             P+ S  Y  Y+    I  +  +     ++Y+ L    R    +F S EEFK MIE AGFQ
Sbjct:   255 PLVSRLYDVYSFQV-IPVLGEVIAGDWKSYQYLVESIR----QFPSQEEFKEMIEDAGFQ 309

Query:   222 YVTYENLTFGVVAIHSGFKL 241
              VTYENLT G+VAIHSGFKL
Sbjct:   310 KVTYENLTSGIVAIHSGFKL 329

GO:0005739 "mitochondrion" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1NBB0 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 225 (84.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 43/57 (75%), Positives = 47/57 (82%)

Query:   152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
             L ++  NAEELP + D +  YTIAFGIRNVTRID AL EAYRVLKPGGRFLCLEFSH
Sbjct:   177 LSWVLGNAEELPFDDDKFDVYTIAFGIRNVTRIDLALQEAYRVLKPGGRFLCLEFSH 233

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1NXQ7 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 225 (84.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 43/57 (75%), Positives = 47/57 (82%)

Query:   152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
             L ++  NAEELP + D +  YTIAFGIRNVTRID AL EAYRVLKPGGRFLCLEFSH
Sbjct:   184 LSWVLGNAEELPFDDDKFDVYTIAFGIRNVTRIDLALQEAYRVLKPGGRFLCLEFSH 240

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1098643 Coq5 "coenzyme Q5 homolog, methyltransferase (yeast)" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
 Identities = 61/140 (43%), Positives = 79/140 (56%)

Query:   110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRID-------KIDIPNPRLRFLEANAEEL 162
             L ++  +AEELP + DS+  YTIAFGIRNVT ID       ++  P  R   LE      
Sbjct:   193 LAWVLGDAEELPFDDDSFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFGQVND 252

Query:   163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-SHEEFKSMIESAGFQ 221
             P+ S  Y  Y+    I  +  +     ++Y+ L    R    +F + E+FK MIE AGFQ
Sbjct:   253 PLISRLYDLYSFQV-IPVIGEVIAGDWKSYQYLVESIR----KFPNQEDFKDMIEDAGFQ 307

Query:   222 YVTYENLTFGVVAIHSGFKL 241
              VTYENLT G+VAIHSGFKL
Sbjct:   308 RVTYENLTTGIVAIHSGFKL 327

GO:0005739 "mitochondrion" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q0P5A2 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 61/140 (43%), Positives = 79/140 (56%)

Query:   110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRID-------KIDIPNPRLRFLEANAEEL 162
             L ++  +AEELP + + +  YTIAFGIRNVT ID       ++  P  R   LE +    
Sbjct:   193 LAWILGDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNN 252

Query:   163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-SHEEFKSMIESAGFQ 221
             P+ S  Y  Y+    I  +  +     ++Y+ L    R    +F S EEFK MIE AGFQ
Sbjct:   253 PLLSRLYDVYSFQV-IPVLGEVIAGDWKSYQYLVESIR----QFPSQEEFKEMIEDAGFQ 307

Query:   222 YVTYENLTFGVVAIHSGFKL 241
              VTYENLT G+VAIHSGFKL
Sbjct:   308 KVTYENLTSGIVAIHSGFKL 327

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5ZLL5 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 42/57 (73%), Positives = 46/57 (80%)

Query:   152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
             L ++  NAEEL  + D +  YTIAFGIRNVTRID AL EAYRVLKPGGRFLCLEFSH
Sbjct:   177 LSWVLGNAEELHFDDDKFDVYTIAFGIRNVTRIDLALQEAYRVLKPGGRFLCLEFSH 233

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

FB|FBgn0030460 CG2453 [Drosophila melanogaster (taxid:7227)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 101/248 (40%), Positives = 139/248 (56%)

Query:     5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
             ++EVFE VA SYD MNDAMS GIHR+WKD+F++RLGPTH  +LLD+AGGT  +    ++ 
Sbjct:    62 VHEVFEQVANSYDVMNDAMSLGIHRVWKDVFVERLGPTHGMRLLDMAGGTGDIT-FRYLR 120

Query:    65 RAYDQYSFQVIPVMGQLIAGQWKPYQYLV--ESIRQFPNQID-IPNPRLRFLEANAEELP 121
                +Q + Q  P    +       +   V  E  ++     D + N  + +  A+AE+LP
Sbjct:   121 YLNNQPNPQQRP--SHVTVSDINQHMLNVGEERAKRLGLTTDQLSNCTVAWQCADAEKLP 178

Query:   122 IESDSYSAYTIAFGIRNVTRIDKI-----DIPNPRLRFLEANAEELPIESDS--YSAYTI 174
                 S++AYTIAFGIRN T +DK+      +  P  RF+      L  E+    Y  Y+ 
Sbjct:   179 FPDASFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSF 238

Query:   175 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-SHEEFKSMIESAGFQYVTYENLTFGVV 233
                I  + ++     +AY+ L    R     F   E+FK MIE AGF  V+YENLTFGVV
Sbjct:   239 QV-IPPMGQLLAGQWQAYQYLVESIR----RFPKQEQFKQMIEQAGFDQVSYENLTFGVV 293

Query:   234 AIHSGFKL 241
             +IHSGFKL
Sbjct:   294 SIHSGFKL 301

GO:0008425 "2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity" evidence=ISS

UNIPROTKB|E2RF28 COQ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 59/140 (42%), Positives = 79/140 (56%)

Query:   110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRID-------KIDIPNPRLRFLEANAEEL 162
             L ++  +AEELP + D +  YTIAFGIRNVT ID       ++  P  R   LE +    
Sbjct:   193 LAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNN 252

Query:   163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-SHEEFKSMIESAGFQ 221
             P+ S  Y  Y+    I  +  +     ++Y+ L    R    +F S EEF+ MIE AGF+
Sbjct:   253 PLISRLYDLYSFQV-IPVLGEVIAGDWKSYQYLVESIR----QFPSQEEFREMIEDAGFE 307

Query:   222 YVTYENLTFGVVAIHSGFKL 241
              VTYE+LT G+VAIHSGFKL
Sbjct:   308 KVTYESLTSGIVAIHSGFKL 327

GO:0005739 "mitochondrion" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5HYK3 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 60/140 (42%), Positives = 77/140 (55%)

Query:   110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRID-------KIDIPNPRLRFLEANAEEL 162
             L ++  +AEELP + D +  YTIAFGIRNVT ID       ++  P  R   LE +    
Sbjct:   193 LAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNN 252

Query:   163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-SHEEFKSMIESAGFQ 221
             P+ S  Y  Y+    I  +  +     ++Y+ L    R     F S EEFK MIE AGF 
Sbjct:   253 PLISRLYDLYSFQV-IPVLGEVIAGDWKSYQYLVESIR----RFPSQEEFKDMIEDAGFH 307

Query:   222 YVTYENLTFGVVAIHSGFKL 241
              VTYE+LT G+VAIHSGFKL
Sbjct:   308 KVTYESLTSGIVAIHSGFKL 327

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

RGD|1310857 Coq5 "coenzyme Q5 homolog, methyltransferase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 61/140 (43%), Positives = 80/140 (57%)

Query:   110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-----DIPNPRLRFL--EANAEEL 162
             L ++  +AEELP + D +  YTIAFGIRNVT ID+       +  P  RFL  E +    
Sbjct:   193 LAWVLGDAEELPFDDDRFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCLEFSQVND 252

Query:   163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-SHEEFKSMIESAGFQ 221
             P+ S  Y  Y+    I  +  +     ++Y+ L    R    +F + EEFK MIE AGFQ
Sbjct:   253 PLISRLYDLYSFQV-IPVIGEVIAGDWKSYQYLVESIR----KFPNQEEFKDMIEDAGFQ 307

Query:   222 YVTYENLTFGVVAIHSGFKL 241
              VTYE+LT G+VAIHSGFKL
Sbjct:   308 KVTYESLTSGIVAIHSGFKL 327

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8GXR2	UBIE_RICB8	2, ., 1, ., 1, ., 2, 0, 1	0.3297	0.7510	0.7298	yes	N/A
Q1RJY5	UBIE_RICBR	2, ., 1, ., 1, ., 2, 0, 1	0.3297	0.7510	0.7298	yes	N/A
B9JZF4	UBIE_AGRVS	2, ., 1, ., 1, ., 2, 0, 1	0.3297	0.7468	0.6976	yes	N/A
A1UUE1	UBIE_BARBK	2, ., 1, ., 1, ., 2, 0, 1	0.3131	0.7427	0.6884	yes	N/A
Q0P5A2	COQ5_BOVIN	2, ., 1, ., 1, ., 2, 0, 1	0.4098	0.8879	0.6484	yes	N/A
A4WVR7	UBIE_RHOS5	2, ., 1, ., 1, ., 2, 0, 1	0.3120	0.7510	0.724	yes	N/A
Q9LVC8	COQ5_ARATH	2, ., 1, ., 1, ., 2, 0, 1	0.3413	0.7676	0.6423	yes	N/A
P49017	COQ5_YEAST	2, ., 1, ., 1, ., 2, 0, 1	0.3566	0.7800	0.6123	yes	N/A
Q8UIH5	UBIE_AGRT5	2, ., 1, ., 1, ., 2, 0, 1	0.3795	0.9004	0.8378	yes	N/A
Q5RBK6	COQ5_PONAB	2, ., 1, ., 1, ., 2, 0, 1	0.4063	0.8879	0.6544	yes	N/A
Q3IJV7	UBIE_PSEHT	2, ., 1, ., 1, ., 2, 0, 1	0.3526	0.9004	0.8645	yes	N/A
Q92SK7	UBIE_RHIME	2, ., 1, ., 1, ., 2, 0, 1	0.3510	0.9004	0.8410	yes	N/A
Q1I3T0	UBIE_PSEE4	2, ., 1, ., 1, ., 2, 0, 1	0.3485	0.9004	0.8476	yes	N/A
Q5HYK3	COQ5_HUMAN	2, ., 1, ., 1, ., 2, 0, 1	0.4063	0.8879	0.6544	yes	N/A
A6UFF7	UBIE_SINMW	2, ., 1, ., 1, ., 2, 0, 1	0.3510	0.9004	0.8410	yes	N/A
Q88D17	UBIE_PSEPK	2, ., 1, ., 1, ., 2, 0, 1	0.3485	0.9004	0.8476	yes	N/A
Q9VYF8	COQ5_DROME	2, ., 1, ., 1, ., 2, 0, 1	0.3627	0.7551	0.6046	yes	N/A
A8GPI0	UBIE_RICAH	2, ., 1, ., 1, ., 2, 0, 1	0.3369	0.7510	0.7298	yes	N/A
B8IJ00	UBIE_METNO	2, ., 1, ., 1, ., 2, 0, 1	0.3475	0.7427	0.7103	yes	N/A
A4VGE5	UBIE_PSEU5	2, ., 1, ., 1, ., 2, 0, 1	0.3443	0.9004	0.8476	yes	N/A
B1J2S8	UBIE_PSEPW	2, ., 1, ., 1, ., 2, 0, 1	0.3485	0.9004	0.8476	yes	N/A
Q2YJM4	UBIE_BRUA2	2, ., 1, ., 1, ., 2, 0, 1	0.3805	0.8921	0.7992	yes	N/A
A9ILA7	UBIE_BART1	2, ., 1, ., 1, ., 2, 0, 1	0.3321	0.7344	0.6807	yes	N/A
Q2KDB0	UBIE_RHIEC	2, ., 1, ., 1, ., 2, 0, 1	0.3546	0.7468	0.6976	yes	N/A
Q4G064	COQ5_RAT	2, ., 1, ., 1, ., 2, 0, 1	0.3824	0.8796	0.6483	yes	N/A
Q576Q0	UBIE_BRUAB	2, ., 1, ., 1, ., 2, 0, 1	0.3805	0.8921	0.7992	yes	N/A
A5WA45	UBIE_PSEP1	2, ., 1, ., 1, ., 2, 0, 1	0.3485	0.9004	0.8476	yes	N/A
A9WW74	UBIE_BRUSI	2, ., 1, ., 1, ., 2, 0, 1	0.3805	0.8921	0.7992	yes	N/A
Q5JNC0	COQ5_ORYSJ	2, ., 1, ., 1, ., 2, 0, 1	0.3482	0.7676	0.6292	yes	N/A
B0T7D0	UBIE_CAUSK	2, ., 1, ., 1, ., 2, 0, 1	0.3046	0.7593	0.7261	yes	N/A
B2SC50	UBIE_BRUA1	2, ., 1, ., 1, ., 2, 0, 1	0.3805	0.8921	0.7992	yes	N/A
B5ZYK8	UBIE_RHILW	2, ., 1, ., 1, ., 2, 0, 1	0.3765	0.8921	0.8333	yes	N/A
A8LNK7	UBIE_DINSH	2, ., 1, ., 1, ., 2, 0, 1	0.3405	0.7385	0.712	yes	N/A
Q54VN2	COQ5_DICDI	2, ., 1, ., 1, ., 2, 0, 1	0.3510	0.8547	0.6560	yes	N/A
A9MCZ2	UBIE_BRUC2	2, ., 1, ., 1, ., 2, 0, 1	0.3687	0.7468	0.6691	yes	N/A
Q9CXI0	COQ5_MOUSE	2, ., 1, ., 1, ., 2, 0, 1	0.3894	0.8796	0.6483	yes	N/A
Q8FUZ3	UBIE_BRUSU	2, ., 1, ., 1, ., 2, 0, 1	0.3687	0.7468	0.6691	yes	N/A
C0RMK3	UBIE_BRUMB	2, ., 1, ., 1, ., 2, 0, 1	0.3805	0.8921	0.7992	yes	N/A
B3PZ92	UBIE_RHIE6	2, ., 1, ., 1, ., 2, 0, 1	0.3724	0.8921	0.8333	yes	N/A
Q6G577	UBIE_BARHE	2, ., 1, ., 1, ., 2, 0, 1	0.3226	0.7385	0.6846	yes	N/A
Q4UMW4	UBIE_RICFE	2, ., 1, ., 1, ., 2, 0, 1	0.3261	0.7510	0.7298	yes	N/A
Q5ZLL5	COQ5_CHICK	2, ., 1, ., 1, ., 2, 0, 1	0.3780	0.8921	0.6913	yes	N/A
B9J7S8	UBIE_AGRRK	2, ., 1, ., 1, ., 2, 0, 1	0.375	0.8879	0.8294	yes	N/A
A6WYI0	UBIE_OCHA4	2, ., 1, ., 1, ., 2, 0, 1	0.3565	0.9045	0.8288	yes	N/A
Q98GV1	UBIE_RHILO	2, ., 1, ., 1, ., 2, 0, 1	0.3428	0.9004	0.8410	yes	N/A
P34666	COQ5_CAEEL	2, ., 1, ., 1, ., 2, 0, 1	0.3577	0.8962	0.7578	yes	N/A
Q8YDE4	UBIE_BRUME	2, ., 1, ., 1, ., 2, 0, 1	0.3805	0.8921	0.7992	yes	N/A
Q1MME0	UBIE_RHIL3	2, ., 1, ., 1, ., 2, 0, 1	0.3765	0.8921	0.8333	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	241
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	2e-55
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	5e-51
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	6e-46
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	3e-45
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	1e-15
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	1e-13
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-11
PLN02232	160	PLN02232, PLN02232, ubiquinone biosynthesis methyl	7e-08
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	6e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-04
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	3e-04
PLN02490	340	PLN02490, PLN02490, MPBQ/MSBQ methyltransferase	5e-04
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	0.003
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	0.004

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score =  177 bits (451), Expect = 2e-55
 Identities = 86/283 (30%), Positives = 118/283 (41%), Gaps = 106/283 (37%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
           E+F+++A  YD MND +SFG+HR+W+   I  LG     K+LD+A GT  LA  L   +A
Sbjct: 15  EMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIAL--AKA 72

Query: 67  YDQYSFQVIPV---MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123
             + + +V+ +    G L  G+ K             +     N  + F++ +AE LP  
Sbjct: 73  VGK-TGEVVGLDFSEGMLAVGREK-----------LRDLGLSGN--VEFVQGDAEALPFP 118

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
            +S+               D                           A TIAFG+RNV  
Sbjct: 119 DNSF---------------D---------------------------AVTIAFGLRNVPD 136

Query: 184 IDKALSEAYRVLKPGGRFLCLEFSH----------------------------------- 208
           IDKAL E YRVLKPGGR + LEFS                                    
Sbjct: 137 IDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196

Query: 209 ----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                     EE  +M+E AGF+ V Y NLT G+VA+H G+K 
Sbjct: 197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239

Length = 239

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score =  165 bits (420), Expect = 5e-51
 Identities = 91/279 (32%), Positives = 113/279 (40%), Gaps = 101/279 (36%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
           +VF +VA  YD MND +SFGIHRLWKD  +  +G     K LDVAGGT    +  F L  
Sbjct: 11  DVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGNKFLDVAGGT---GDWTFGLSD 67

Query: 67  YDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126
               S +V+ +                          DI    L+  E  A+E       
Sbjct: 68  SAGSSGKVVGL--------------------------DINENMLKEGEKKAKE------- 94

Query: 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK 186
                            K +I      FL+ NAEELP E DS+   TI+FG+RN     K
Sbjct: 95  ---------------EGKYNI-----EFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLK 134

Query: 187 ALSEAYRVLKPGGRFLCLEFSH-------------------------------------- 208
            L EA+RVLKPGGR +CLEFS                                       
Sbjct: 135 VLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKYVMPFMGKMFAKSYKSYQYLQES 194

Query: 209 -------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240
                  +   SM E AGF+ V YE+LT G+ AIH G K
Sbjct: 195 IRDFPDQKTLASMFEKAGFKSVGYESLTGGIAAIHWGIK 233

Length = 233

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score =  152 bits (386), Expect = 6e-46
 Identities = 83/279 (29%), Positives = 115/279 (41%), Gaps = 103/279 (36%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
           E+F+ +A  YD +ND +SFG+HRLW+   +  +G     K+LDVA GT  LA  L     
Sbjct: 3   EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELA---- 58

Query: 67  YDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126
                 +  P  G++    +   + L  + ++    ++I      F++A+AE LP E +S
Sbjct: 59  ------KSAPDRGKVTGVDFSS-EMLEVAKKKSELPLNIE-----FIQADAEALPFEDNS 106

Query: 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK 186
           + A TIAF                                          G+RNVT I K
Sbjct: 107 FDAVTIAF------------------------------------------GLRNVTDIQK 124

Query: 187 ALSEAYRVLKPGGRFLCLEFS--------------------------------------- 207
           AL E YRVLKPGGR + LEFS                                       
Sbjct: 125 ALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184

Query: 208 ------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240
                  EE  +M++ AGF+ V Y +LTFGV AIH G K
Sbjct: 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score =  150 bits (382), Expect = 3e-45
 Identities = 89/282 (31%), Positives = 111/282 (39%), Gaps = 105/282 (37%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
           +VF+ VAK YD MND MSFG+HRLW+   I  LG     K+LDVA GT  +A  L + ++
Sbjct: 15  KVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMA--LLLAKS 72

Query: 67  YDQYSFQVI-PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125
                   +      L   + K                      + F+  +AE LP   +
Sbjct: 73  VGTGEVVGLDISESMLEVAREK--------------LKKKGVQNVEFVVGDAENLPFPDN 118

Query: 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID 185
           S+ A TI+F                                          G+RNVT ID
Sbjct: 119 SFDAVTISF------------------------------------------GLRNVTDID 136

Query: 186 KALSEAYRVLKPGGRFLCLEFSH------------------------------------- 208
           KAL E YRVLKPGGR L LEFS                                      
Sbjct: 137 KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLA 196

Query: 209 ---------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
                    EE K MIE AGF+ V YENLTFG+VA+H G+K 
Sbjct: 197 ESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238

Length = 238

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 45/134 (33%)

Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--- 208
           +  +  NA ELP + +S+   TI FG+RNV    + L E YRV+KPGG+ +CLE S    
Sbjct: 98  VELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTI 157

Query: 209 ------------------------------------------EEFKSMIESAGFQYVTYE 226
                                                     +E   M + AGF+ V  +
Sbjct: 158 PGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217

Query: 227 NLTFGVVAIHSGFK 240
           + T GV A+H GFK
Sbjct: 218 SYTGGVAAMHMGFK 231

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 55/212 (25%)

Query: 8   VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAY 67
           +F  +A  YD +ND +S G HR+WK + +   G     ++LD+  G+  LA   F+L   
Sbjct: 38  LFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLA---FLLS-- 92

Query: 68  DQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSY 127
                + +   G+++   +   Q  V + RQ                        E  + 
Sbjct: 93  -----EKVGSDGKVMGLDFSSEQLAVAASRQ------------------------ELKAK 123

Query: 128 SAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 187
           S Y                     + ++E +A +LP +   + A T+ +G+RNV    KA
Sbjct: 124 SCYK-------------------NIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKA 164

Query: 188 LSEAYRVLKPGGRFLCLEF--SHEEFKSMIES 217
           + E YRVLKPG R   L+F  S + F + ++ 
Sbjct: 165 MQEMYRVLKPGSRVSILDFNKSTQPFTTSMQE 196

Length = 261

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
               +F+  +AE+LP   +S+     +  + ++   ++AL E  RVLKPGG+ + 
Sbjct: 38  RAPRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase

 Score = 50.5 bits (120), Expect = 7e-08
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
           + ++E +A +LP +   + A T+ +G+RNV    +A+ E YRVLKPG R   L+F+
Sbjct: 28  IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN 83

Length = 160

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206
            P + F+  +A+ LP    S+ A      ++++    +AL+E  RVL+PGGR + L+ 
Sbjct: 68  GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 150 PRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206
             + F++ + EELP   +E +S+        + ++   DK L E  RVLKPGG  +  + 
Sbjct: 54  ENVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP 113

Query: 207 SHE-EFKSMIES 217
               E  +++E 
Sbjct: 114 VLLSELPALLED 125

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 138 NVTRIDKIDIPNPRLRFLEANAEELPIESD-SYS-AYTIAFGIRNVTRIDKALSEAYRVL 195
            + R     +    +  L+ +AEELP E+D S+    +       V  + + L EA R+L
Sbjct: 35  ELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLL 94

Query: 196 KPGGRFLC 203
           KPGG  + 
Sbjct: 95  KPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 35/97 (36%)

Query: 154 FLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFL------ 202
           F     E LP+  +S     I   I N         ++   EA+RVLKPGGRF       
Sbjct: 132 FRLGEIEALPVADNS--VDVI---ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186

Query: 203 -----------------CLE--FSHEEFKSMIESAGF 220
                            C+      EE+ +M+  AGF
Sbjct: 187 RGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223

Length = 272

>gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 137 RNVTRID---------KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 187
           +NVT +D         K   P    + +E +AE+LP  +D    Y  A  I       + 
Sbjct: 138 KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 197

Query: 188 LSEAYRVLKPGGR 200
           + EAYRVLK GG+
Sbjct: 198 IKEAYRVLKIGGK 210

Length = 340

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 61  LFVLR-AYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR--FLEANA 117
           +   +  Y  Y   ++P+ G+L A  +K Y +L ES R FP         L   F EA  
Sbjct: 157 IPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGM-----DELAEMFQEAGF 211

Query: 118 EELPIESDSYSAYTIAFGIR 137
           +++ ++S +     +  G +
Sbjct: 212 KDVEVKSYTGGVAAMHMGFK 231

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
           +  ++F+  +AE+LP+E  S+        ++    + +ALSE  RVLKPGG      F  
Sbjct: 79  SENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138

Query: 209 EEFK 212
               
Sbjct: 139 GTLH 142

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	100.0
KOG1540|consensus	296		99.97
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.97
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.93
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.92
PRK05785	226	hypothetical protein; Provisional	99.89
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.86
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.83
PLN02244	340	tocopherol O-methyltransferase	99.8
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.75
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.75
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.75
KOG4300|consensus	252		99.73
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.7
PLN02490	340	MPBQ/MSBQ methyltransferase	99.68
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.66
PLN02336	475	phosphoethanolamine N-methyltransferase	99.66
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.65
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.65
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.65
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.64
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.64
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.64
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.63
PRK08317	241	hypothetical protein; Provisional	99.63
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.62
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.6
PRK11207	197	tellurite resistance protein TehB; Provisional	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.6
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.6
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.59
KOG1270|consensus	282		99.59
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.57
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.55
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.54
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.53
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.52
PRK06202	232	hypothetical protein; Provisional	99.51
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.5
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.46
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.46
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.45
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.45
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.45
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.45
PRK14968	188	putative methyltransferase; Provisional	99.44
PRK12335	287	tellurite resistance protein TehB; Provisional	99.44
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.44
PLN02336	475	phosphoethanolamine N-methyltransferase	99.43
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.43
PRK04266	226	fibrillarin; Provisional	99.43
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.41
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.4
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.4
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.39
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.39
PRK06922	677	hypothetical protein; Provisional	99.38
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.37
KOG2361|consensus	264		99.36
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.36
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.36
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.35
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.35
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.34
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.32
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.3
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.3
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.29
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.29
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.27
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.26
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.26
PRK14967	223	putative methyltransferase; Provisional	99.26
PLN03075	296	nicotianamine synthase; Provisional	99.26
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.25
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.25
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.25
PTZ00146	293	fibrillarin; Provisional	99.23
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.23
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.23
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.22
KOG1271|consensus	227		99.22
TIGR03438	301	probable methyltransferase. This model represents	99.21
PRK07402	196	precorrin-6B methylase; Provisional	99.21
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.21
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.18
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.16
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.16
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.15
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.14
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.13
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.13
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.11
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.11
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.11
KOG1541|consensus	270		99.1
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.1
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.09
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.09
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.08
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.08
COG4123	248	Predicted O-methyltransferase [General function pr	99.06
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.05
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.04
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.04
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.02
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.02
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.02
KOG3010|consensus	261		99.02
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.98
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.98
TIGR00438	188	rrmJ cell division protein FtsJ.	98.98
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.97
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.97
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.95
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.94
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.94
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.94
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.93
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.93
KOG3045|consensus	325		98.92
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.91
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.89
COG2890	280	HemK Methylase of polypeptide chain release factor	98.88
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.88
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.88
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.87
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.85
PRK01581	374	speE spermidine synthase; Validated	98.85
PHA03411	279	putative methyltransferase; Provisional	98.83
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.83
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.83
KOG2940|consensus	325		98.82
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.82
COG2521	287	Predicted archaeal methyltransferase [General func	98.8
PRK03612	521	spermidine synthase; Provisional	98.79
PRK04457	262	spermidine synthase; Provisional	98.78
PRK00811	283	spermidine synthase; Provisional	98.77
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.76
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.75
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.73
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.72
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.71
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.67
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.66
KOG1975|consensus	389		98.65
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.64
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.63
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.6
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.59
PLN02366	308	spermidine synthase	98.55
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.54
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.53
KOG2899|consensus	288		98.52
PLN02672	1082	methionine S-methyltransferase	98.51
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.5
PLN02476	278	O-methyltransferase	98.49
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.49
COG4122	219	Predicted O-methyltransferase [General function pr	98.48
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.47
KOG3178|consensus	342		98.46
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.45
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.44
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.41
KOG3191|consensus	209		98.4
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.4
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.4
KOG1661|consensus	237		98.36
PHA03412	241	putative methyltransferase; Provisional	98.32
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.32
KOG1499|consensus	346		98.32
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.27
PRK00536	262	speE spermidine synthase; Provisional	98.25
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.24
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.24
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.24
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.22
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.22
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.21
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.21
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.2
KOG2915|consensus	314		98.2
KOG3987|consensus	288		98.2
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.19
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.19
KOG2904|consensus	328		98.12
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.1
KOG1331|consensus	293		98.09
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.06
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.06
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.0
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.99
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.99
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.98
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.94
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.91
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.9
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.88
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.87
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.86
KOG1269|consensus	364		97.82
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.82
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.81
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.8
PLN02823	336	spermine synthase	97.78
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.78
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.77
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.74
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.72
COG2520	341	Predicted methyltransferase [General function pred	97.7
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.69
KOG1500|consensus	517		97.67
KOG2798|consensus	369		97.67
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	97.67
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.66
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.65
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.65
KOG0820|consensus	315		97.64
COG4798	238	Predicted methyltransferase [General function pred	97.63
KOG3420|consensus	185		97.6
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.6
PRK04148	134	hypothetical protein; Provisional	97.57
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.54
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.51
KOG1663|consensus	237		97.48
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.45
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.35
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.34
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.17
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.08
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.07
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.07
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.05
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.03
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.01
KOG1540|consensus	296		97.01
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.98
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.96
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.9
KOG1122|consensus	460		96.84
KOG3201|consensus	201		96.8
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.79
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.76
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.72
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.63
COG3897	218	Predicted methyltransferase [General function pred	96.61
KOG2352|consensus	482		96.55
KOG4589|consensus	232		96.52
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.43
KOG2730|consensus	263		96.38
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.36
KOG1709|consensus	271		96.33
KOG2187|consensus	534		96.15
KOG1562|consensus	337		96.01
PF13679	141	Methyltransf_32: Methyltransferase domain	95.67
KOG2198|consensus	375		95.52
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.45
PRK05785	226	hypothetical protein; Provisional	95.43
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	95.35
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.3
COG0286	489	HsdM Type I restriction-modification system methyl	95.11
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.97
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	94.96
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.9
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	94.89
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.87
COG4076	252	Predicted RNA methylase [General function predicti	94.84
PRK13699	227	putative methylase; Provisional	94.68
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.64
KOG0822|consensus	649		94.49
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.2
PTZ00357	1072	methyltransferase; Provisional	92.98
KOG2793|consensus	248		92.79
KOG1596|consensus	317		92.75
KOG4058|consensus	199		92.66
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	92.57
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.11
COG4301	321	Uncharacterized conserved protein [Function unknow	92.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.9
KOG3115|consensus	249		91.26
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	91.26
PRK11524	284	putative methyltransferase; Provisional	90.56
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	90.43
KOG1099|consensus	294		90.11
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	89.96
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	89.0
PRK10742	250	putative methyltransferase; Provisional	88.76
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	88.29
KOG2539|consensus	491		87.65
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.08
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	86.37
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	86.12
KOG2671|consensus	421		85.66
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	84.18
COG1565	370	Uncharacterized conserved protein [Function unknow	83.24
PF03269	177	DUF268: Caenorhabditis protein of unknown function	83.23
PRK11524	284	putative methyltransferase; Provisional	83.15
COG3129	292	Predicted SAM-dependent methyltransferase [General	82.47
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	82.24
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	82.08
KOG1501|consensus	636		81.5
KOG0024|consensus	354		81.3
KOG1227|consensus	351		80.72
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	80.57
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	80.22

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=100.00  E-value=7.1e-32  Score=233.04  Aligned_cols=182  Identities=49%  Similarity=0.785  Sum_probs=167.8

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      +.+.++|+++++.||.+|+.+|++.|+.|++.+.+.+...+|.+|||||||||..+             ..+....    
T Consensus        11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a-------------~~~~k~~----   73 (238)
T COG2226          11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMA-------------LLLAKSV----   73 (238)
T ss_pred             HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHH-------------HHHHHhc----
Confidence            47899999999999999999999999999999999998889999999999999999             5555521    


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ...+++++|+|+.|++.+++++.                         +.+..  +++++.+|++++
T Consensus        74 -------------g~g~v~~~D~s~~ML~~a~~k~~-------------------------~~~~~--~i~fv~~dAe~L  113 (238)
T COG2226          74 -------------GTGEVVGLDISESMLEVAREKLK-------------------------KKGVQ--NVEFVVGDAENL  113 (238)
T ss_pred             -------------CCceEEEEECCHHHHHHHHHHhh-------------------------ccCcc--ceEEEEechhhC
Confidence                         24689999999999999999988                         55555  399999999999


Q ss_pred             CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420         163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------------------  208 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----------------------------------  208 (241)
                      |+++++||+|.++++|+++++++++|+|++|+|||||++++.+++.                                  
T Consensus       114 Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~  193 (238)
T COG2226         114 PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYE  193 (238)
T ss_pred             CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHH
Confidence            9999999999999999999999999999999999999999999776                                  


Q ss_pred             ------------HHHHHHHHHCCCceEEEEEecCceeEEEeeecC
Q psy1420         209 ------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL  241 (241)
Q Consensus       209 ------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~  241 (241)
                                  +++.++++++||..+..+++++|++++|+|.||
T Consensus       194 yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~  238 (238)
T COG2226         194 YLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP  238 (238)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence                        899999999999999999999999999999986

>KOG1540|consensus

Probab=99.97  E-value=1e-30  Score=224.27  Aligned_cols=189  Identities=58%  Similarity=0.936  Sum_probs=168.4

Q ss_pred             hHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIA   83 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (241)
                      .+..+|+.+|+.||.||+.|+.+.|+.|.+.+...+++.+++++||++||||..+             ..++.    ...
T Consensus        61 ~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDia-------------Fril~----~v~  123 (296)
T KOG1540|consen   61 LVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIA-------------FRILR----HVK  123 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhH-------------HHHHH----hhc
Confidence            4688999999999999999999999999999999999999999999999999999             56665    222


Q ss_pred             cCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCC-CCeeEEecccCCC
Q psy1420          84 GQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN-PRLRFLEANAEEL  162 (241)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~  162 (241)
                      .+++       -...+++..|++|+|+..+++++.                         +.++.. .++.++++|++.+
T Consensus       124 s~~~-------~~~~~V~v~Dinp~mL~vgkqRa~-------------------------~~~l~~~~~~~w~~~dAE~L  171 (296)
T KOG1540|consen  124 SQFG-------DRESKVTVLDINPHMLAVGKQRAK-------------------------KRPLKASSRVEWVEGDAEDL  171 (296)
T ss_pred             cccC-------CCCceEEEEeCCHHHHHHHHHHHh-------------------------hcCCCcCCceEEEeCCcccC
Confidence            2211       134789999999999999999987                         333332 3589999999999


Q ss_pred             CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420         163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------------------  208 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----------------------------------  208 (241)
                      |++++++|+++++++|+++++++++|++++|+|||||+++|.+|++                                  
T Consensus       172 pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqY  251 (296)
T KOG1540|consen  172 PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQY  251 (296)
T ss_pred             CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhh
Confidence            9999999999999999999999999999999999999999999888                                  


Q ss_pred             -----------HHHHHHHHHCCCceEE-EEEecCceeEEEeeecC
Q psy1420         209 -----------EEFKSMIESAGFQYVT-YENLTFGVVAIHSGFKL  241 (241)
Q Consensus       209 -----------~~~~~~l~~~Gf~~~~-~~~~~~~~~~~~~~~~~  241 (241)
                                 ++++.+++++||..+. +++++||+++||.|.|+
T Consensus       252 LveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~Gv~aIH~giK~  296 (296)
T KOG1540|consen  252 LVESIRRFPPQEEFASMIEDAGFSSVNGYENLTFGVVAIHSGIKL  296 (296)
T ss_pred             HHhhhhcCCCHHHHHHHHHHcCCccccccccceeeeeeeehhccC
Confidence                       9999999999999997 99999999999999875

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.97  E-value=8e-32  Score=233.16  Aligned_cols=182  Identities=39%  Similarity=0.674  Sum_probs=90.8

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      +.++++|+.++..||.+|..++++.++.|++.+.+.+...++.+|||+|||||..+             ..++..++   
T Consensus         7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~-------------~~l~~~~~---   70 (233)
T PF01209_consen    7 QYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVT-------------RELARRVG---   70 (233)
T ss_dssp             ------------------------------SHHHHHHT--S--EEEEET-TTSHHH-------------HHHGGGSS---
T ss_pred             HHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHH-------------HHHHHHCC---
Confidence            57899999999999999999999999999999999888889999999999999988             44433111   


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++++|+|+.|++.++++..                         +.+..  +++++++|++.+
T Consensus        71 -------------~~~~v~~vD~s~~ML~~a~~k~~-------------------------~~~~~--~i~~v~~da~~l  110 (233)
T PF01209_consen   71 -------------PNGKVVGVDISPGMLEVARKKLK-------------------------REGLQ--NIEFVQGDAEDL  110 (233)
T ss_dssp             ----------------EEEEEES-HHHHHHHHHHHH-------------------------HTT----SEEEEE-BTTB-
T ss_pred             -------------CccEEEEecCCHHHHHHHHHHHH-------------------------hhCCC--CeeEEEcCHHHh
Confidence                         35689999999999999999987                         44443  799999999999


Q ss_pred             CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420         163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------------------  208 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----------------------------------  208 (241)
                      |+++++||+|++++++++++++.+++++++|+|||||++++.+++.                                  
T Consensus       111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~y  190 (233)
T PF01209_consen  111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRY  190 (233)
T ss_dssp             -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------
T ss_pred             cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999998666                                  


Q ss_pred             -----------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         209 -----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       209 -----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                                 +++.++++++||+.++.+++++|++.+|+|.|
T Consensus       191 L~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  191 LPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             -------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCC
Confidence                       89999999999999999999999999999987

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.93  E-value=1.2e-24  Score=191.17  Aligned_cols=185  Identities=28%  Similarity=0.486  Sum_probs=153.8

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      +.++++|+.+++.||.+++.++.+.++.|++.+.+.+...++.+|||+|||+|..+             ..+...++   
T Consensus        33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~-------------~~la~~~~---   96 (261)
T PLN02233         33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLA-------------FLLSEKVG---   96 (261)
T ss_pred             HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHH-------------HHHHHHhC---
Confidence            35788999999999999888888888889888877777788899999999999987             33332000   


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++++|+|+.|++.++++....                       .... ..+++++++|+.++
T Consensus        97 -------------~~~~V~gvD~S~~ml~~A~~r~~~~-----------------------~~~~-~~~i~~~~~d~~~l  139 (261)
T PLN02233         97 -------------SDGKVMGLDFSSEQLAVAASRQELK-----------------------AKSC-YKNIEWIEGDATDL  139 (261)
T ss_pred             -------------CCCEEEEEECCHHHHHHHHHHhhhh-----------------------hhcc-CCCeEEEEcccccC
Confidence                         2358999999999999998764300                       0011 13688999999999


Q ss_pred             CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420         163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------------------  208 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----------------------------------  208 (241)
                      |+++++||+|++++++++++++..++++++|+|||||++++.++..                                  
T Consensus       140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l  219 (261)
T PLN02233        140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL  219 (261)
T ss_pred             CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence            9988899999999999999999999999999999999999876432                                  


Q ss_pred             ----------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         209 ----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       209 ----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                                +++.++++++||+.++...+.+|++.+|+|++
T Consensus       220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~  261 (261)
T PLN02233        220 KSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR  261 (261)
T ss_pred             HHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence                      67789999999999999999999999999975

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.92  E-value=1e-23  Score=180.85  Aligned_cols=182  Identities=34%  Similarity=0.578  Sum_probs=156.9

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      +.+.++|+.++..||.++..++++.+..|++.+++.+..+++.+|||+|||+|.++             ..+...++   
T Consensus         5 ~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~-------------~~la~~~~---   68 (231)
T TIGR02752         5 ERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWS-------------IALAEAVG---   68 (231)
T ss_pred             HHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHH-------------HHHHHHhC---
Confidence            46889999999999999988888888999999999998888999999999999988             43333110   


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++++|+++.+++.++++..                         ..+.  ++++++++|+...
T Consensus        69 -------------~~~~v~gvD~s~~~~~~a~~~~~-------------------------~~~~--~~v~~~~~d~~~~  108 (231)
T TIGR02752        69 -------------PEGHVIGLDFSENMLSVGRQKVK-------------------------DAGL--HNVELVHGNAMEL  108 (231)
T ss_pred             -------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hcCC--CceEEEEechhcC
Confidence                         24589999999999999998876                         3333  3688999999888


Q ss_pred             CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420         163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------------------------  208 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----------------------------------  208 (241)
                      +.+.++||+|++.+++++.+++.++++++.++|+|||++++.+...                                  
T Consensus       109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  188 (231)
T TIGR02752       109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSW  188 (231)
T ss_pred             CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence            8777899999999999999999999999999999999999876321                                  


Q ss_pred             -----------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         209 -----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       209 -----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                                 +++.++++++||..+++....+|.+++++|+|
T Consensus       189 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       189 LQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence                       56789999999999999999999999999987

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK05785 hypothetical protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=174.64  Aligned_cols=169  Identities=20%  Similarity=0.331  Sum_probs=138.1

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ   80 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~   80 (241)
                      +.++++|+.+++.||.++..++++.+..|++.+.+.+..  .++.+|||+|||||..+             ..+..    
T Consensus         9 ~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~-------------~~l~~----   71 (226)
T PRK05785          9 EELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELS-------------YHFKK----   71 (226)
T ss_pred             HHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHH-------------HHHHH----
Confidence            358899999999999999888888888888777665532  34679999999999887             33333    


Q ss_pred             hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC
Q psy1420          81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE  160 (241)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  160 (241)
                                    ....+++|+|+|+.|++.++.+.                                   ..+++|++
T Consensus        72 --------------~~~~~v~gvD~S~~Ml~~a~~~~-----------------------------------~~~~~d~~  102 (226)
T PRK05785         72 --------------VFKYYVVALDYAENMLKMNLVAD-----------------------------------DKVVGSFE  102 (226)
T ss_pred             --------------hcCCEEEEECCCHHHHHHHHhcc-----------------------------------ceEEechh
Confidence                          01357999999999999986432                                   24678889


Q ss_pred             CCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------------------------------
Q psy1420         161 ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------------  208 (241)
Q Consensus       161 ~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------------  208 (241)
                      .+|+++++||+|++++++++++++++++++++|+|||.+  .+.+++.                                
T Consensus       103 ~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y  180 (226)
T PRK05785        103 ALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDY  180 (226)
T ss_pred             hCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence            999989999999999999999999999999999999943  2223221                                


Q ss_pred             -------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         209 -------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       209 -------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                                   +++.++++++| ..++.+.+++|++++|+|+|
T Consensus       181 ~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        181 KYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence                         89999999984 77999999999999999987

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.86  E-value=3.7e-20  Score=158.28  Aligned_cols=184  Identities=42%  Similarity=0.706  Sum_probs=151.7

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      +...++|++++..|+..++.+..+.+..+...+...+...++.+|||+|||+|..+             ..++.    ..
T Consensus        11 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~----~~   73 (239)
T PRK00216         11 EKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLA-------------IALAK----AV   73 (239)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHH-------------HHHHH----Hc
Confidence            46788999999999986666666667777778888777777889999999999988             44443    10


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                      .            ...+++++|+++.+++.+++++.                         ..+.. .++.+...|+...
T Consensus        74 ~------------~~~~v~~~D~s~~~~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~  115 (239)
T PRK00216         74 G------------KTGEVVGLDFSEGMLAVGREKLR-------------------------DLGLS-GNVEFVQGDAEAL  115 (239)
T ss_pred             C------------CCCeEEEEeCCHHHHHHHHHhhc-------------------------ccccc-cCeEEEecccccC
Confidence            0            24689999999999999998876                         32222 4678899999887


Q ss_pred             CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec------------------------------------
Q psy1420         163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF------------------------------------  206 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~------------------------------------  206 (241)
                      +.+.++||+|+++.++++.+++...+..+.++|+|||.+++.++                                    
T Consensus       116 ~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (239)
T PRK00216        116 PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSY  195 (239)
T ss_pred             CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence            76667899999999999999999999999999999999987653                                    


Q ss_pred             ---------CHHHHHHHHHHCCCceEEEEEecCceeEEEeeecC
Q psy1420         207 ---------SHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL  241 (241)
Q Consensus       207 ---------~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~  241 (241)
                               +.+++.++++++||+.+....+.+|...++.|+||
T Consensus       196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~  239 (239)
T PRK00216        196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP  239 (239)
T ss_pred             HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence                     11568889999999999999999999999999997

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.83  E-value=4.2e-19  Score=150.24  Aligned_cols=177  Identities=46%  Similarity=0.764  Sum_probs=147.4

Q ss_pred             HHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420           6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ   85 (241)
Q Consensus         6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (241)
                      .++|+.++..||..+..+..+..+.++..+.+.+...++.+|||+|||+|..+             ..++...+      
T Consensus         2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~~~~~~~------   62 (223)
T TIGR01934         2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLA-------------IELAKSAP------   62 (223)
T ss_pred             HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhH-------------HHHHHhcC------
Confidence            57899999999999888777777788888888887778889999999999988             43333100      


Q ss_pred             CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420          86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE  165 (241)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (241)
                                ...+++++|+++.+++.+.++..                            . ..++.+..+|+.+.+.+
T Consensus        63 ----------~~~~~~~iD~~~~~~~~~~~~~~----------------------------~-~~~i~~~~~d~~~~~~~  103 (223)
T TIGR01934        63 ----------DRGKVTGVDFSSEMLEVAKKKSE----------------------------L-PLNIEFIQADAEALPFE  103 (223)
T ss_pred             ----------CCceEEEEECCHHHHHHHHHHhc----------------------------c-CCCceEEecchhcCCCC
Confidence                      12579999999999998887642                            1 13578889999888776


Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC--------------------------------------
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS--------------------------------------  207 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--------------------------------------  207 (241)
                      .++||+|+++.++++.+++..+++++.+.|+|||++++.+..                                      
T Consensus       104 ~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (223)
T TIGR01934       104 DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE  183 (223)
T ss_pred             CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence            778999999999999999999999999999999999986531                                      


Q ss_pred             -------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         208 -------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       208 -------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                             .+++.++++++||+.+..+++.+|+..+++|+|
T Consensus       184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence                   156889999999999999999999999999986

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02244 tocopherol O-methyltransferase

Probab=99.80  E-value=4.8e-19  Score=161.25  Aligned_cols=174  Identities=17%  Similarity=0.229  Sum_probs=132.5

Q ss_pred             cchHHHHHhhhhhccccc-hhhhhhhh-------------HHHHHHHHHhhcCC-----CCCCeEEEEecCCCcchhHHH
Q psy1420           2 KLPMYEVFENVAKSYDTM-NDAMSFGI-------------HRLWKDIFIDRLGP-----THDTKLLDVAGGTDPLANLLF   62 (241)
Q Consensus         2 ~~~~~~~f~~~~~~yd~~-~~~~~~~~-------------~~~~~~~~~~~l~~-----~~~~~vLdvG~G~G~~~~~~~   62 (241)
                      ++.+..+||..+..|+.. .+.+..+.             .....+.+++.+..     .++.+|||+|||+|..+    
T Consensus        58 ~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~----  133 (340)
T PLN02244         58 KEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS----  133 (340)
T ss_pred             HHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH----
Confidence            446677777777666542 11221111             11233445555554     67789999999999988    


Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeec
Q psy1420          63 VLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI  142 (241)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (241)
                               ..+..                  ....+++++|+++.+++.+++++.                        
T Consensus       134 ---------~~La~------------------~~g~~v~gvD~s~~~i~~a~~~~~------------------------  162 (340)
T PLN02244        134 ---------RYLAR------------------KYGANVKGITLSPVQAARANALAA------------------------  162 (340)
T ss_pred             ---------HHHHH------------------hcCCEEEEEECCHHHHHHHHHHHH------------------------
Confidence                     44433                  124689999999999999998877                        


Q ss_pred             cccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC---------------
Q psy1420         143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS---------------  207 (241)
Q Consensus       143 ~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~---------------  207 (241)
                       ..++. ++++++.+|+.++|+++++||+|++..+++|++++.+++++++++|||||++++.++.               
T Consensus       163 -~~g~~-~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~  240 (340)
T PLN02244        163 -AQGLS-DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDE  240 (340)
T ss_pred             -hcCCC-CceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHH
Confidence             44544 4689999999999988889999999999999999999999999999999999986532               


Q ss_pred             ------------------HHHHHHHHHHCCCceEEEEEecCce
Q psy1420         208 ------------------HEEFKSMIESAGFQYVTYENLTFGV  232 (241)
Q Consensus       208 ------------------~~~~~~~l~~~Gf~~~~~~~~~~~~  232 (241)
                                        .+++.++++++||..++.++++..+
T Consensus       241 ~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v  283 (340)
T PLN02244        241 QKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHV  283 (340)
T ss_pred             HHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHH
Confidence                              1688899999999999999886443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.75  E-value=2.5e-17  Score=143.24  Aligned_cols=151  Identities=19%  Similarity=0.293  Sum_probs=121.1

Q ss_pred             cchHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      |+.+...|+..+..|+...     ..++...+.+++.+...++.+|||+|||+|..+             ..+..     
T Consensus         6 k~~i~~~F~~aa~~Y~~~~-----~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~-----   62 (251)
T PRK10258          6 KQAIAAAFGRAAAHYEQHA-----ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMS-------------RYWRE-----   62 (251)
T ss_pred             HHHHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHH-------------HHHHH-----
Confidence            4578899999999998752     234556666777777666789999999999877             33322     


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                                    ....++++|+|+.+++.++++..                                ...++++|++.
T Consensus        63 --------------~~~~v~~~D~s~~~l~~a~~~~~--------------------------------~~~~~~~d~~~   96 (251)
T PRK10258         63 --------------RGSQVTALDLSPPMLAQARQKDA--------------------------------ADHYLAGDIES   96 (251)
T ss_pred             --------------cCCeEEEEECCHHHHHHHHhhCC--------------------------------CCCEEEcCccc
Confidence                          35689999999999999887643                                24578899998


Q ss_pred             CCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-------------------------HHHHHHHH
Q psy1420         162 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------------------------EEFKSMIE  216 (241)
Q Consensus       162 ~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------------------------~~~~~~l~  216 (241)
                      +|+++++||+|+++..+++.+++..++.++.++|+|||.+++..+..                         +++.+++.
T Consensus        97 ~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~  176 (251)
T PRK10258         97 LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALN  176 (251)
T ss_pred             CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence            88888899999999999999999999999999999999999886443                         66777777


Q ss_pred             HCCCc
Q psy1420         217 SAGFQ  221 (241)
Q Consensus       217 ~~Gf~  221 (241)
                      ..++.
T Consensus       177 ~~~~~  181 (251)
T PRK10258        177 GWRYQ  181 (251)
T ss_pred             hCCce
Confidence            77765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.75  E-value=1.8e-17  Score=144.88  Aligned_cols=161  Identities=18%  Similarity=0.319  Sum_probs=120.1

Q ss_pred             HHHhhhhhccccchhhhhhhhHH--H-H--HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           7 EVFENVAKSYDTMNDAMSFGIHR--L-W--KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         7 ~~f~~~~~~yd~~~~~~~~~~~~--~-~--~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      .-||.++..|+..--....|..+  . +  .+.+++.+. .++.+|||+|||+|..+             ..++.     
T Consensus         4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a-------------~~la~-----   64 (255)
T PRK11036          4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTA-------------IKLAE-----   64 (255)
T ss_pred             CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHH-------------HHHHH-----
Confidence            45777787776632111111111  1 1  234455554 45679999999999988             44444     


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                                    ...+++++|+|+.+++.+++++.                         ..++. ++++++++|+.+
T Consensus        65 --------------~g~~v~~vD~s~~~l~~a~~~~~-------------------------~~g~~-~~v~~~~~d~~~  104 (255)
T PRK11036         65 --------------LGHQVILCDLSAEMIQRAKQAAE-------------------------AKGVS-DNMQFIHCAAQD  104 (255)
T ss_pred             --------------cCCEEEEEECCHHHHHHHHHHHH-------------------------hcCCc-cceEEEEcCHHH
Confidence                          35689999999999999998887                         44543 468899999877


Q ss_pred             CC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC---------------------------------
Q psy1420         162 LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS---------------------------------  207 (241)
Q Consensus       162 ~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~---------------------------------  207 (241)
                      ++ ...++||+|++..++++++++..+++++.++|||||++++..+.                                 
T Consensus       105 l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  184 (255)
T PRK11036        105 IAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY  184 (255)
T ss_pred             HhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC
Confidence            63 44678999999999999999999999999999999999875322                                 


Q ss_pred             ---HHHHHHHHHHCCCceEEEE
Q psy1420         208 ---HEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       208 ---~~~~~~~l~~~Gf~~~~~~  226 (241)
                         .+++.++++++||+++...
T Consensus       185 ~~~~~~l~~~l~~aGf~~~~~~  206 (255)
T PRK11036        185 PLDPEQVYQWLEEAGWQIMGKT  206 (255)
T ss_pred             CCCHHHHHHHHHHCCCeEeeee
Confidence               1788999999999988665

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.75  E-value=3.3e-17  Score=148.02  Aligned_cols=129  Identities=15%  Similarity=0.188  Sum_probs=106.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..+..                   .+..++++|+++.+++.++.+..   
T Consensus       130 ~~g~~ILDIGCG~G~~s-------------~~La~-------------------~g~~V~GID~s~~~i~~Ar~~~~---  174 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLS-------------EPLAR-------------------MGATVTGVDAVDKNVKIARLHAD---  174 (322)
T ss_pred             CCCCEEEEeeCCCCHHH-------------HHHHH-------------------cCCEEEEEeCCHHHHHHHHHHHH---
Confidence            45679999999999987             33333                   35689999999999999987765   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..... .++.++++++++++.+.++||+|++..+++|++++..+++++.++|||||.+
T Consensus       175 ----------------------~~~~~-~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~l  231 (322)
T PLN02396        175 ----------------------MDPVT-STIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGAT  231 (322)
T ss_pred             ----------------------hcCcc-cceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEE
Confidence                                  22221 3688999999988877789999999999999999999999999999999999


Q ss_pred             EEEecC--------------------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFS--------------------------------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++.+..                                .+++..+++++||+++++.-+
T Consensus       232 iist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~  290 (322)
T PLN02396        232 VLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF  290 (322)
T ss_pred             EEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence            987521                                188999999999999887544

>KOG4300|consensus

Probab=99.73  E-value=8.9e-17  Score=134.81  Aligned_cols=143  Identities=23%  Similarity=0.347  Sum_probs=118.8

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      ..+.......+||+|||||.+-              ++.+                 -++...++++|+++.|.+.+.+.
T Consensus        70 ~~~gk~~K~~vLEvgcGtG~Nf--------------kfy~-----------------~~p~~svt~lDpn~~mee~~~ks  118 (252)
T KOG4300|consen   70 YFLGKSGKGDVLEVGCGTGANF--------------KFYP-----------------WKPINSVTCLDPNEKMEEIADKS  118 (252)
T ss_pred             HHhcccCccceEEecccCCCCc--------------cccc-----------------CCCCceEEEeCCcHHHHHHHHHH
Confidence            3455555567899999999986              2222                 13578999999999999999998


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCee-EEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLR-FLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                      +.                         .. .+ .++. ++.++.+++| .++.+||.|++.+++..++++.+.|+++.|+
T Consensus       119 ~~-------------------------E~-k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rl  171 (252)
T KOG4300|consen  119 AA-------------------------EK-KP-LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRL  171 (252)
T ss_pred             Hh-------------------------hc-cC-cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHh
Confidence            87                         22 12 3455 8999999998 7889999999999999999999999999999


Q ss_pred             ccCCcEEEEEecCH----------------------------HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420         195 LKPGGRFLCLEFSH----------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHS  237 (241)
Q Consensus       195 LkpgG~l~i~~~~~----------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  237 (241)
                      |+|||+++++++..                            .+..+.++.+-|...+.++.++|.--.++
T Consensus       172 LRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~~~ttw~~V  242 (252)
T KOG4300|consen  172 LRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFNFGTTWVIV  242 (252)
T ss_pred             cCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhcccCCceEEEE
Confidence            99999999998766                            77888999999999999999888766544

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.70  E-value=3.3e-16  Score=137.82  Aligned_cols=138  Identities=15%  Similarity=0.288  Sum_probs=113.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...++..+..+++.+|||+|||+|..+             ..++.                  ....+++++|+++.+++
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a-------------~~la~------------------~~~~~v~giD~s~~~~~   89 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGC-------------KYINE------------------KYGAHVHGVDICEKMVN   89 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhh-------------HHHHh------------------hcCCEEEEEECCHHHHH
Confidence            456667778889999999999999987             33322                  12458999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~  189 (241)
                      .++++..                         .    ..++.+.+.|+...|+++++||+|++..+++|++  ++..+++
T Consensus        90 ~a~~~~~-------------------------~----~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~  140 (263)
T PTZ00098         90 IAKLRNS-------------------------D----KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFE  140 (263)
T ss_pred             HHHHHcC-------------------------c----CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHH
Confidence            9988765                         2    1368899999988888888999999988887775  7889999


Q ss_pred             HHHHhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++++|||||++++.++..                        +++.++++++||+.+..++++
T Consensus       141 ~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~  204 (263)
T PTZ00098        141 KCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS  204 (263)
T ss_pred             HHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence            9999999999999986421                        788999999999999988764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.68  E-value=7.3e-16  Score=140.06  Aligned_cols=160  Identities=22%  Similarity=0.306  Sum_probs=120.6

Q ss_pred             HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCC
Q psy1420           8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQW   86 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (241)
                      .|+.++..||.+.+.  ..+...+++.+++.... .++.+|||+|||+|..+             ..++.    ..    
T Consensus        79 ~y~~lA~~YD~~~~~--~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~-------------l~La~----~~----  135 (340)
T PLN02490         79 FYRFLSIVYDHIINP--GHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTT-------------LGIVK----HV----  135 (340)
T ss_pred             EccceeeecCCCeec--CcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHH-------------HHHHH----HC----
Confidence            456667777764211  11223344445555443 46789999999999977             33322    10    


Q ss_pred             CcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC
Q psy1420          87 KPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES  166 (241)
Q Consensus        87 ~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (241)
                               ....++++|+++.+++.++++..                         .     .+++++.+|+..+++++
T Consensus       136 ---------~~~~VtgVD~S~~mL~~A~~k~~-------------------------~-----~~i~~i~gD~e~lp~~~  176 (340)
T PLN02490        136 ---------DAKNVTILDQSPHQLAKAKQKEP-------------------------L-----KECKIIEGDAEDLPFPT  176 (340)
T ss_pred             ---------CCCEEEEEECCHHHHHHHHHhhh-------------------------c-----cCCeEEeccHHhCCCCC
Confidence                     23579999999999999887643                         1     25778999999988888


Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec-------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-------------------SHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~-------------------~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ++||+|+++.++++++++...+++++++|||||++++.+.                   +.+++.++++++||+.+++.+
T Consensus       177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~  256 (340)
T PLN02490        177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR  256 (340)
T ss_pred             CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence            8999999999999999999999999999999999987642                   228889999999999998887


Q ss_pred             ec
Q psy1420         228 LT  229 (241)
Q Consensus       228 ~~  229 (241)
                      +.
T Consensus       257 i~  258 (340)
T PLN02490        257 IG  258 (340)
T ss_pred             cC
Confidence            63

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.66  E-value=7.4e-16  Score=125.99  Aligned_cols=115  Identities=26%  Similarity=0.446  Sum_probs=100.9

Q ss_pred             eeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCC-CCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420         101 NQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEELPIESDSYSAYTIAFGIR  179 (241)
Q Consensus       101 ~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~  179 (241)
                      .|+|+|+.|++.|+++..                         .... ...+++++++|+.++|+++++||+|++.++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~-------------------------~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~   55 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQS-------------------------LKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR   55 (160)
T ss_pred             CeEcCCHHHHHHHHHhhh-------------------------cccccCCCceEEEEechhhCCCCCCCeeEEEecchhh
Confidence            489999999999987654                         1111 01368999999999999888999999999999


Q ss_pred             ccccHHHHHHHHHHhccCCcEEEEEecCH--------------------------------------------HHHHHHH
Q psy1420         180 NVTRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------------------------EEFKSMI  215 (241)
Q Consensus       180 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------------------------~~~~~~l  215 (241)
                      +++++..++++++|+|||||.+++.+++.                                            +++.+++
T Consensus        56 ~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll  135 (160)
T PLN02232         56 NVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLA  135 (160)
T ss_pred             cCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHH
Confidence            99999999999999999999999987643                                            8899999


Q ss_pred             HHCCCceEEEEEecCceeEEEeeec
Q psy1420         216 ESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       216 ~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      +++||+.++.....+|++++|+|.|
T Consensus       136 ~~aGF~~~~~~~~~~g~~~~~~~~~  160 (160)
T PLN02232        136 LEAGFSSACHYEISGGFMGNLVAMR  160 (160)
T ss_pred             HHcCCCcceEEECcchHhHeeEeeC
Confidence            9999999999999999999999975

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.66  E-value=1.5e-15  Score=143.57  Aligned_cols=139  Identities=22%  Similarity=0.306  Sum_probs=113.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..+..                  .....++++|+|+.+++
T Consensus       255 te~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvDiS~~~l~  303 (475)
T PLN02336        255 TKEFVDKLDLKPGQKVLDVGCGIGGGD-------------FYMAE------------------NFDVHVVGIDLSVNMIS  303 (475)
T ss_pred             HHHHHHhcCCCCCCEEEEEeccCCHHH-------------HHHHH------------------hcCCEEEEEECCHHHHH
Confidence            455666666677889999999999877             33332                  12457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .++++..                         .  .. .++++..+|+...++++++||+|++..+++|++++..+++++
T Consensus       304 ~A~~~~~-------------------------~--~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~  355 (475)
T PLN02336        304 FALERAI-------------------------G--RK-CSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSF  355 (475)
T ss_pred             HHHHHhh-------------------------c--CC-CceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHH
Confidence            9987765                         1  11 368899999998887778999999999999999999999999


Q ss_pred             HHhccCCcEEEEEecCH-----------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         192 YRVLKPGGRFLCLEFSH-----------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~-----------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++|||||++++.++..                       +++.++++++||.++..++++
T Consensus       356 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~  416 (475)
T PLN02336        356 FKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRT  416 (475)
T ss_pred             HHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence            99999999999876422                       778999999999998887654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.65  E-value=2.2e-15  Score=136.33  Aligned_cols=139  Identities=21%  Similarity=0.248  Sum_probs=107.6

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+...+.+.++.+|||+|||+|..+             ..++.                  .....++|+|+|+.++..
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~-------------~~la~------------------~g~~~V~GiD~S~~~l~q  160 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHM-------------WRMLG------------------AGAKLVVGIDPSQLFLCQ  160 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHH-------------HHHHH------------------cCCCEEEEEcCCHHHHHH
Confidence            34455666667889999999999988             44444                  122359999999998865


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      +.....                         ..+.. .++.++.++++.+|. .++||+|+|..+++|..++...+++++
T Consensus       161 ~~a~~~-------------------------~~~~~-~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~  213 (322)
T PRK15068        161 FEAVRK-------------------------LLGND-QRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLK  213 (322)
T ss_pred             HHHHHH-------------------------hcCCC-CCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHH
Confidence            543322                         11111 368899999999887 678999999999999999999999999


Q ss_pred             HhccCCcEEEEEec--------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         193 RVLKPGGRFLCLEF--------------------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       193 ~~LkpgG~l~i~~~--------------------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +.|+|||.+++.++                          +.+++.++++++||+.+++...+
T Consensus       214 ~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~  276 (322)
T PRK15068        214 DQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS  276 (322)
T ss_pred             HhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence            99999999987532                          11688999999999999887653

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.65  E-value=2e-15  Score=131.84  Aligned_cols=129  Identities=11%  Similarity=0.119  Sum_probs=101.8

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+++.+...++.+|||+|||+|.++             ..+..    ..             +..+++++|+|+.|++.
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~-------------~~l~~----~~-------------p~~~v~gvD~s~~~~~~   68 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLT-------------RYLAR----RW-------------PGAVIEALDSSPEMVAA   68 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence            45667777778889999999999988             43333    10             24579999999999998


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      +++.                                  ++++.++|+..++ +.++||+|+++.++++++++.+++++++
T Consensus        69 a~~~----------------------------------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~  113 (255)
T PRK14103         69 ARER----------------------------------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWV  113 (255)
T ss_pred             HHhc----------------------------------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHH
Confidence            8532                                  3567888887764 4568999999999999999999999999


Q ss_pred             HhccCCcEEEEEec------------------------------------CHHHHHHHHHHCCCceEEEE
Q psy1420         193 RVLKPGGRFLCLEF------------------------------------SHEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       193 ~~LkpgG~l~i~~~------------------------------------~~~~~~~~l~~~Gf~~~~~~  226 (241)
                      ++|||||++++...                                    +.+++.++++++||++...+
T Consensus       114 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~  183 (255)
T PRK14103        114 DELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE  183 (255)
T ss_pred             HhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence            99999999987421                                    11778889999999755444

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.65  E-value=5.5e-16  Score=124.38  Aligned_cols=124  Identities=21%  Similarity=0.325  Sum_probs=95.5

Q ss_pred             HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      .+.+..... ..++.+|||+|||+|.++             ..+.+                   ...+++++|+++.++
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~~~g~D~~~~~~   57 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFL-------------RALAK-------------------RGFEVTGVDISPQMI   57 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHH-------------HHHHH-------------------TTSEEEEEESSHHHH
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHH-------------HHHHH-------------------hCCEEEEEECCHHHH
Confidence            344444443 467889999999999887             44433                   345899999999998


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.     .                                .......+....+.+.++||+|+|+.+++|++++..+|++
T Consensus        58 ~~-----~--------------------------------~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~  100 (161)
T PF13489_consen   58 EK-----R--------------------------------NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKE  100 (161)
T ss_dssp             HH-----T--------------------------------TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHH
T ss_pred             hh-----h--------------------------------hhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHH
Confidence            88     1                                1122223223333456799999999999999999999999


Q ss_pred             HHHhccCCcEEEEEecCH--------------------------HHHHHHHHHCCCceEE
Q psy1420         191 AYRVLKPGGRFLCLEFSH--------------------------EEFKSMIESAGFQYVT  224 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~--------------------------~~~~~~l~~~Gf~~~~  224 (241)
                      ++++|||||++++.+...                          ++++++++++||++++
T Consensus       101 l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen  101 LSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             HHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             HHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            999999999999987642                          8999999999999875

...

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.64  E-value=8.5e-16  Score=112.39  Aligned_cols=95  Identities=28%  Similarity=0.417  Sum_probs=79.4

Q ss_pred             EEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccc
Q psy1420          48 LDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSY  127 (241)
Q Consensus        48 LdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~  127 (241)
                      ||+|||+|..+             ..+..                  .....++++|+++.+++.++++..         
T Consensus         1 LdiG~G~G~~~-------------~~l~~------------------~~~~~v~~~D~~~~~~~~~~~~~~---------   40 (95)
T PF08241_consen    1 LDIGCGTGRFA-------------AALAK------------------RGGASVTGIDISEEMLEQARKRLK---------   40 (95)
T ss_dssp             EEET-TTSHHH-------------HHHHH------------------TTTCEEEEEES-HHHHHHHHHHTT---------
T ss_pred             CEecCcCCHHH-------------HHHHh------------------ccCCEEEEEeCCHHHHHHHHhccc---------
Confidence            79999999988             44444                  126789999999999999998876         


Q ss_pred             cccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE
Q psy1420         128 SAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC  203 (241)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i  203 (241)
                                      .     .++.+...|+..+|+++++||+|++..++++++++.++++++.|+|||||++++
T Consensus        41 ----------------~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   41 ----------------N-----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ----------------T-----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ----------------c-----cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence                            2     246699999999999999999999999999999999999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.64  E-value=5.5e-16  Score=133.08  Aligned_cols=128  Identities=17%  Similarity=0.257  Sum_probs=108.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      -++.+|||+|||.|.++             ..++.                   .+..|+++|.++.+++.|+..+.   
T Consensus        58 l~g~~vLDvGCGgG~Ls-------------e~mAr-------------------~Ga~VtgiD~se~~I~~Ak~ha~---  102 (243)
T COG2227          58 LPGLRVLDVGCGGGILS-------------EPLAR-------------------LGASVTGIDASEKPIEVAKLHAL---  102 (243)
T ss_pred             CCCCeEEEecCCccHhh-------------HHHHH-------------------CCCeeEEecCChHHHHHHHHhhh---
Confidence            47889999999999988             55544                   46899999999999999998887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++.   +++.+.+++++....++||+|+|..+++|+++++.+++.+.+++||||.+
T Consensus       103 ----------------------e~gv~---i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~l  157 (243)
T COG2227         103 ----------------------ESGVN---IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGIL  157 (243)
T ss_pred             ----------------------hcccc---ccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEE
Confidence                                  55544   66888888887655589999999999999999999999999999999999


Q ss_pred             EEEecCH--------------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         202 LCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       202 ~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++++...                                +++..++..+|+.+.....++
T Consensus       158 f~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~  217 (243)
T COG2227         158 FLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT  217 (243)
T ss_pred             EEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceE
Confidence            9988655                                788888888888877666543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.64  E-value=5.1e-15  Score=130.27  Aligned_cols=131  Identities=27%  Similarity=0.365  Sum_probs=106.7

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|..+             ..++..++                ...+++++|+++.+++.++++..  
T Consensus        75 ~~~g~~VLDiG~G~G~~~-------------~~~a~~~g----------------~~~~v~gvD~s~~~l~~A~~~~~--  123 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDC-------------FLAARRVG----------------PTGKVIGVDMTPEMLAKARANAR--  123 (272)
T ss_pred             CCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEECCCHHHHHHHHHHHH--
Confidence            467889999999999876             22222111                23579999999999999998877  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                             ..++.  ++++..+|+..+++++++||+|+++.++++.++..+.+++++++|||||+
T Consensus       124 -----------------------~~g~~--~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~  178 (272)
T PRK11873        124 -----------------------KAGYT--NVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGR  178 (272)
T ss_pred             -----------------------HcCCC--CEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcE
Confidence                                   44443  68889999998888778999999999999999999999999999999999


Q ss_pred             EEEEec-------------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420         201 FLCLEF-------------------------SHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       201 l~i~~~-------------------------~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      +++.++                         ..+++.++++++||..+++..
T Consensus       179 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~  230 (272)
T PRK11873        179 FAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP  230 (272)
T ss_pred             EEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence            998653                         126889999999999877644

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.63  E-value=1e-14  Score=124.43  Aligned_cols=170  Identities=15%  Similarity=0.178  Sum_probs=122.9

Q ss_pred             cchHHHHHhh--------hhhccccchhhhh--hhhHHHHHHHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhh
Q psy1420           2 KLPMYEVFEN--------VAKSYDTMNDAMS--FGIHRLWKDIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQ   69 (241)
Q Consensus         2 ~~~~~~~f~~--------~~~~yd~~~~~~~--~~~~~~~~~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~   69 (241)
                      ++.+..+|+.        +...|+..+..-+  ...+..+++.+++.+.  ..++.+|||+|||+|..+           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~-----------   70 (219)
T TIGR02021         2 KEQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLS-----------   70 (219)
T ss_pred             ccHHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHH-----------
Confidence            3566777777        4444554332221  1124455666666665  456789999999999988           


Q ss_pred             hhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCC
Q psy1420          70 YSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN  149 (241)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (241)
                        ..+..                   ....++|+|+++.+++.++++..                         ..+.. 
T Consensus        71 --~~la~-------------------~~~~v~gvD~s~~~i~~a~~~~~-------------------------~~~~~-  103 (219)
T TIGR02021        71 --IELAK-------------------RGAIVKAVDISEQMVQMARNRAQ-------------------------GRDVA-  103 (219)
T ss_pred             --HHHHH-------------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hcCCC-
Confidence              43333                   34579999999999999998876                         33322 


Q ss_pred             CCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEec---------------------
Q psy1420         150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF---------------------  206 (241)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~---------------------  206 (241)
                      .++.+...|+..++   ++||+|++..++++++  +...+++++.+++++++.+.+...                     
T Consensus       104 ~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (219)
T TIGR02021       104 GNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRAT  180 (219)
T ss_pred             CceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCccccc
Confidence            36889999988775   6899999999888765  357889999999998877766322                     


Q ss_pred             -----CHHHHHHHHHHCCCceEEEEEecCce
Q psy1420         207 -----SHEEFKSMIESAGFQYVTYENLTFGV  232 (241)
Q Consensus       207 -----~~~~~~~~l~~~Gf~~~~~~~~~~~~  232 (241)
                           +.+++.++++++||+++.....+.|.
T Consensus       181 ~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~  211 (219)
T TIGR02021       181 SAYLHPMTDLERALGELGWKIVREGLVSTGF  211 (219)
T ss_pred             ceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence                 11889999999999999988776654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK08317 hypothetical protein; Provisional

Probab=99.63  E-value=1.5e-14  Score=122.96  Aligned_cols=142  Identities=23%  Similarity=0.354  Sum_probs=113.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ..++.+.+.+...++.+|||+|||+|.++             ..+...++                ...+++++|+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~~a~~~~----------------~~~~v~~~d~~~~~   56 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDA-------------RELARRVG----------------PEGRVVGIDRSEAM   56 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHHhcC----------------CCcEEEEEeCCHHH
Confidence            34566777778888899999999999988             44443110                24689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.++++..                         ..  . .++.+...|+...+.+.++||+|++..+++++.++..+++
T Consensus        57 ~~~a~~~~~-------------------------~~--~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~  108 (241)
T PRK08317         57 LALAKERAA-------------------------GL--G-PNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALA  108 (241)
T ss_pred             HHHHHHHhh-------------------------CC--C-CceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHH
Confidence            999987733                         11  1 3578888998888877789999999999999999999999


Q ss_pred             HHHHhccCCcEEEEEecCH------------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH------------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~------------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++.++|||||.+++.+...                              ..+.++++++||..+..+..
T Consensus       109 ~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  177 (241)
T PRK08317        109 EIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEVEPY  177 (241)
T ss_pred             HHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence            9999999999998865320                              46888999999998777655

>TIGR00452 methyltransferase, putative

Probab=99.62  E-value=6.8e-15  Score=132.58  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=104.9

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..++..+...++.+|||+|||+|..+             ..++.                  .....++|+|+|+.|+..
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~-------------~~~~~------------------~g~~~v~GiDpS~~ml~q  159 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHM-------------WRMLG------------------HGAKSLVGIDPTVLFLCQ  159 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHH-------------HHHHH------------------cCCCEEEEEcCCHHHHHH
Confidence            44566666777889999999999977             43333                  022469999999999876


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      +.....                         ... ...++.+...++..++.. .+||+|+|..+++|.+++...|++++
T Consensus       160 ~~~~~~-------------------------~~~-~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~  212 (314)
T TIGR00452       160 FEAVRK-------------------------LLD-NDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLK  212 (314)
T ss_pred             HHHHHH-------------------------Hhc-cCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHH
Confidence            433211                         001 013567788888887653 47999999999999999999999999


Q ss_pred             HhccCCcEEEEEec--------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         193 RVLKPGGRFLCLEF--------------------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       193 ~~LkpgG~l~i~~~--------------------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++|||||.|++.+.                          +..++.++++++||+.+++.+..
T Consensus       213 r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~  275 (314)
T TIGR00452       213 HQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVL  275 (314)
T ss_pred             HhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence            99999999997532                          12788999999999999877653

Known examples to date are restricted to the proteobacteria.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.60  E-value=1.1e-14  Score=129.00  Aligned_cols=137  Identities=20%  Similarity=0.318  Sum_probs=104.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.++.++|.+|||+|||.|..+             ..++.                  ..+.+++++.+|+.+.+
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~-------------~~~a~------------------~~g~~v~gitlS~~Q~~   99 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLA-------------IYAAE------------------RYGCHVTGITLSEEQAE   99 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHH-------------HHHHH------------------HH--EEEEEES-HHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHH-------------HHHHH------------------HcCcEEEEEECCHHHHH
Confidence            466778888899999999999999988             44444                  24678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~  189 (241)
                      .+++++.                         ..++. +++++...|..+++.   +||.|++...+.|+  .+....++
T Consensus       100 ~a~~~~~-------------------------~~gl~-~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~  150 (273)
T PF02353_consen  100 YARERIR-------------------------EAGLE-DRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFR  150 (273)
T ss_dssp             HHHHHHH-------------------------CSTSS-STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHH
T ss_pred             HHHHHHH-------------------------hcCCC-CceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHH
Confidence            9999998                         77776 688999999887643   89999999999998  46789999


Q ss_pred             HHHHhccCCcEEEEEecCH-----------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH-----------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~-----------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .+.++|||||++++..+..                             .++...++++||++...+++
T Consensus       151 ~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~  218 (273)
T PF02353_consen  151 KISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENL  218 (273)
T ss_dssp             HHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred             HHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence            9999999999998754221                             77777889999999888766

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.60  E-value=1.4e-14  Score=122.30  Aligned_cols=131  Identities=17%  Similarity=0.209  Sum_probs=100.6

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+++.+...++.+|||+|||+|..+             ..++.                   ...+++++|+|+.+++.+
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a-------------~~La~-------------------~g~~V~gvD~S~~~i~~a   68 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNS-------------LYLAA-------------------NGFDVTAWDKNPMSIANL   68 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHH-------------HHHHH-------------------CCCEEEEEeCCHHHHHHH
Confidence            4455555667789999999999988             44443                   356899999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHH
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEA  191 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~  191 (241)
                      ++...                         ..++.  ++++...|+...+.+ ++||+|+++.++++++  +...+++++
T Consensus        69 ~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i  120 (197)
T PRK11207         69 ERIKA-------------------------AENLD--NLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANM  120 (197)
T ss_pred             HHHHH-------------------------HcCCC--cceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHH
Confidence            98877                         44443  477888888777653 5799999999998765  567999999


Q ss_pred             HHhccCCcEEEEEe-c---------------CHHHHHHHHHHCCCceEEEE
Q psy1420         192 YRVLKPGGRFLCLE-F---------------SHEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       192 ~~~LkpgG~l~i~~-~---------------~~~~~~~~l~~~Gf~~~~~~  226 (241)
                      .++|||||++++.. +               +.+++.+.++  ||+++...
T Consensus       121 ~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~  169 (197)
T PRK11207        121 QRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN  169 (197)
T ss_pred             HHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence            99999999965532 1               1267777776  89887764

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.60  E-value=1e-14  Score=127.12  Aligned_cols=108  Identities=18%  Similarity=0.239  Sum_probs=85.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+.           .+..+++++|+|+.|++.+++++.   
T Consensus        55 ~~~~~vLDlGcGtG~~~-------------~~l~~----~~~-----------~~~~~v~gvD~S~~ml~~A~~~~~---  103 (247)
T PRK15451         55 QPGTQVYDLGCSLGAAT-------------LSVRR----NIH-----------HDNCKIIAIDNSPAMIERCRRHID---  103 (247)
T ss_pred             CCCCEEEEEcccCCHHH-------------HHHHH----hcC-----------CCCCeEEEEeCCHHHHHHHHHHHH---
Confidence            46779999999999987             32222    100           135689999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG  199 (241)
                                            ..+.. .+++++++|+...+.+  .+|+|+++++++++++  ...++++++++|||||
T Consensus       104 ----------------------~~~~~-~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG  158 (247)
T PRK15451        104 ----------------------AYKAP-TPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGG  158 (247)
T ss_pred             ----------------------hcCCC-CCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCC
Confidence                                  43433 4688999999887754  4899999999998864  4689999999999999


Q ss_pred             EEEEEe
Q psy1420         200 RFLCLE  205 (241)
Q Consensus       200 ~l~i~~  205 (241)
                      .+++.+
T Consensus       159 ~l~l~e  164 (247)
T PRK15451        159 ALVLSE  164 (247)
T ss_pred             EEEEEE
Confidence            999976

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.60  E-value=8.5e-15  Score=118.04  Aligned_cols=109  Identities=21%  Similarity=0.401  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..+++.++                +..+++++|+++.+++.+++.+.   
T Consensus         2 ~~~~~iLDlGcG~G~~~-------------~~l~~~~~----------------~~~~i~gvD~s~~~i~~a~~~~~---   49 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLL-------------IQLAKELN----------------PGAKIIGVDISEEMIEYAKKRAK---   49 (152)
T ss_dssp             TTTSEEEEET-TTSHHH-------------HHHHHHST----------------TTSEEEEEESSHHHHHHHHHHHH---
T ss_pred             CCCCEEEEecCcCcHHH-------------HHHHHhcC----------------CCCEEEEEECcHHHHHHhhcccc---
Confidence            45779999999999988             44442100                35679999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                            +.+++  ++++.+.|+.+++  ++ ++||+|++..++++++++..+++++.+.|+|||
T Consensus        50 ----------------------~~~~~--ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G  104 (152)
T PF13847_consen   50 ----------------------ELGLD--NIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGG  104 (152)
T ss_dssp             ----------------------HTTST--TEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred             ----------------------ccccc--ccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCc
Confidence                                  55554  7999999999976  44 789999999999999999999999999999999


Q ss_pred             EEEEEecC
Q psy1420         200 RFLCLEFS  207 (241)
Q Consensus       200 ~l~i~~~~  207 (241)
                      .+++.+..
T Consensus       105 ~~i~~~~~  112 (152)
T PF13847_consen  105 ILIISDPN  112 (152)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEECC
Confidence            99998877

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.59  E-value=2.3e-14  Score=122.13  Aligned_cols=123  Identities=26%  Similarity=0.417  Sum_probs=98.0

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|.++             ..+..    ..             ....++++|+++.+++.+.....    
T Consensus        34 ~~~~vLDlG~G~G~~~-------------~~l~~----~~-------------~~~~~~~~D~~~~~~~~~~~~~~----   79 (240)
T TIGR02072        34 IPASVLDIGCGTGYLT-------------RALLK----RF-------------PQAEFIALDISAGMLAQAKTKLS----   79 (240)
T ss_pred             CCCeEEEECCCccHHH-------------HHHHH----hC-------------CCCcEEEEeChHHHHHHHHHhcC----
Confidence            4468999999999988             33333    10             24568999999999998876654    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                                 +++.++.+|+...+.++++||+|++..++++..++...+.++.++|+|||.++
T Consensus        80 ---------------------------~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~  132 (240)
T TIGR02072        80 ---------------------------ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLA  132 (240)
T ss_pred             ---------------------------CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEE
Confidence                                       25778899999888777899999999999999999999999999999999999


Q ss_pred             EEecCH--------------------HHHHHHHHHCCCceEEEEE
Q psy1420         203 CLEFSH--------------------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       203 i~~~~~--------------------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      +.++..                    ..+.++++++ |..+.+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~  176 (240)
T TIGR02072       133 FSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEE  176 (240)
T ss_pred             EEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence            876433                    4567777777 77655543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1270|consensus

Probab=99.59  E-value=7.9e-15  Score=127.09  Aligned_cols=141  Identities=21%  Similarity=0.289  Sum_probs=108.5

Q ss_pred             HHHHHHHhhcCC-CC------CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCcee
Q psy1420          30 LWKDIFIDRLGP-TH------DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQ  102 (241)
Q Consensus        30 ~~~~~~~~~l~~-~~------~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (241)
                      +.++.++..... .|      |++|||+|||+|-++             ..+++                   .+..+.|
T Consensus        69 fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLS-------------epLAr-------------------lga~V~G  116 (282)
T KOG1270|consen   69 FIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLS-------------EPLAR-------------------LGAQVTG  116 (282)
T ss_pred             HHHHHHHhcccccCCCccccCCceEEEeccCccccc-------------hhhHh-------------------hCCeeEe
Confidence            345666666522 33      478999999999999             66666                   5789999


Q ss_pred             ecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccC-CCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc
Q psy1420         103 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV  181 (241)
Q Consensus       103 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~  181 (241)
                      +|+++.|++.|+......|.                     ..+ +. -++++.+.+++..   .+.||+|+|+.+++|+
T Consensus       117 ID~s~~~V~vA~~h~~~dP~---------------------~~~~~~-y~l~~~~~~~E~~---~~~fDaVvcsevleHV  171 (282)
T KOG1270|consen  117 IDASDDMVEVANEHKKMDPV---------------------LEGAIA-YRLEYEDTDVEGL---TGKFDAVVCSEVLEHV  171 (282)
T ss_pred             ecccHHHHHHHHHhhhcCch---------------------hccccc-eeeehhhcchhhc---ccccceeeeHHHHHHH
Confidence            99999999999988542111                     111 00 1356677777766   3569999999999999


Q ss_pred             ccHHHHHHHHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420         182 TRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       182 ~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .++..+++.+.+.|||||++++.+..+                                .++..+++.+++++..+..
T Consensus       172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G  249 (282)
T KOG1270|consen  172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVG  249 (282)
T ss_pred             hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence            999999999999999999999988555                                8888999999988766553

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.58  E-value=2.6e-14  Score=121.97  Aligned_cols=129  Identities=16%  Similarity=0.203  Sum_probs=105.9

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      +|||+|||+|..+             ..++.    ..             ....++++|+|+.+++.+++++.       
T Consensus         2 ~vLDiGcG~G~~~-------------~~la~----~~-------------~~~~v~gid~s~~~~~~a~~~~~-------   44 (224)
T smart00828        2 RVLDFGCGYGSDL-------------IDLAE----RH-------------PHLQLHGYTISPEQAEVGRERIR-------   44 (224)
T ss_pred             eEEEECCCCCHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHHHHHHHH-------
Confidence            6999999999987             43333    10             24579999999999999999887       


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                                        ..++. +++++...|....+.+ ++||+|++..++++++++...+++++++|||||++++.+
T Consensus        45 ------------------~~gl~-~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       45 ------------------ALGLQ-GRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             ------------------hcCCC-cceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence                              55554 5788999998766554 589999999999999999999999999999999999876


Q ss_pred             cC------------------HHHHHHHHHHCCCceEEEEEecCc
Q psy1420         206 FS------------------HEEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       206 ~~------------------~~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      +.                  ..++.++++++||++++..++.-.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~  148 (224)
T smart00828      105 FIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE  148 (224)
T ss_pred             cccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence            42                  277899999999999998877544

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.57  E-value=7.7e-14  Score=117.09  Aligned_cols=126  Identities=21%  Similarity=0.305  Sum_probs=102.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..++.    .             .+..+++++|+++.+++.+++++.   
T Consensus        44 ~~g~~VLDiGcGtG~~a-------------l~la~----~-------------~~~~~V~giD~s~~~l~~A~~~~~---   90 (187)
T PRK00107         44 PGGERVLDVGSGAGFPG-------------IPLAI----A-------------RPELKVTLVDSLGKKIAFLREVAA---   90 (187)
T ss_pred             CCCCeEEEEcCCCCHHH-------------HHHHH----H-------------CCCCeEEEEeCcHHHHHHHHHHHH---
Confidence            34789999999999987             32222    0             135789999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            +.+++  +++++++|+.+.+. .++||+|++..    +.++..+++.++++|||||++
T Consensus        91 ----------------------~~~l~--~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~l  141 (187)
T PRK00107         91 ----------------------ELGLK--NVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRF  141 (187)
T ss_pred             ----------------------HcCCC--CEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEE
Confidence                                  55654  48999999988766 67899999853    467889999999999999999


Q ss_pred             EEEecCH--HHHHHHHHHCCCceEEEEEec
Q psy1420         202 LCLEFSH--EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       202 ~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++.....  .++.++.+..|..+.+...++
T Consensus       142 v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (187)
T PRK00107        142 LALKGRDPEEEIAELPKALGGKVEEVIELT  171 (187)
T ss_pred             EEEeCCChHHHHHHHHHhcCceEeeeEEEe
Confidence            9887655  788899999999987776664

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.55  E-value=2.1e-14  Score=109.04  Aligned_cols=106  Identities=20%  Similarity=0.294  Sum_probs=82.4

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      |+.+|||+|||+|..+             ..++.    .             ....+++++|+++.+++.+++++.    
T Consensus         1 p~~~vLDlGcG~G~~~-------------~~l~~----~-------------~~~~~v~gvD~s~~~~~~a~~~~~----   46 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLS-------------IALAR----L-------------FPGARVVGVDISPEMLEIARERAA----   46 (112)
T ss_dssp             TTCEEEEETTTTSHHH-------------HHHHH----H-------------HTTSEEEEEESSHHHHHHHHHHHH----
T ss_pred             CCCEEEEEcCcCCHHH-------------HHHHh----c-------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence            5779999999999988             33322    0             146789999999999999999985    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCCCCCCceeEEeeee-hhhcc---ccHHHHHHHHHHhccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELPIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~V~~~~-~l~~~---~~~~~~l~~~~~~Lkp  197 (241)
                                           +.+.. +++++++.|+ ..... .++||+|++.. .+++.   ++..++++.+.+.|+|
T Consensus        47 ---------------------~~~~~-~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p  103 (112)
T PF12847_consen   47 ---------------------EEGLS-DRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKP  103 (112)
T ss_dssp             ---------------------HTTTT-TTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEE
T ss_pred             ---------------------hcCCC-CCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCC
Confidence                                 33333 6899999999 33332 45799999998 44433   4568999999999999


Q ss_pred             CcEEEEEe
Q psy1420         198 GGRFLCLE  205 (241)
Q Consensus       198 gG~l~i~~  205 (241)
                      ||++++.+
T Consensus       104 gG~lvi~~  111 (112)
T PF12847_consen  104 GGRLVINT  111 (112)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999864

...

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=1.3e-14  Score=125.49  Aligned_cols=108  Identities=16%  Similarity=0.164  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+.           .+..+++++|+|+.|++.+++++.   
T Consensus        52 ~~~~~iLDlGcG~G~~~-------------~~l~~----~~~-----------~p~~~v~gvD~s~~ml~~a~~~~~---  100 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAAT-------------LSARR----NIN-----------QPNVKIIGIDNSQPMVERCRQHIA---  100 (239)
T ss_pred             CCCCEEEEecCCCCHHH-------------HHHHH----hcC-----------CCCCeEEEEeCCHHHHHHHHHHHH---
Confidence            46679999999999987             33333    110           135789999999999999998876   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG  199 (241)
                                            ..+.. .+++++++|+...+.+  .+|+|++++++++++  ++..++++++++|||||
T Consensus       101 ----------------------~~~~~-~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG  155 (239)
T TIGR00740       101 ----------------------AYHSE-IPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG  155 (239)
T ss_pred             ----------------------hcCCC-CCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCe
Confidence                                  32222 3688999999988754  489999999999875  45789999999999999


Q ss_pred             EEEEEe
Q psy1420         200 RFLCLE  205 (241)
Q Consensus       200 ~l~i~~  205 (241)
                      .+++.+
T Consensus       156 ~l~i~d  161 (239)
T TIGR00740       156 VLVLSE  161 (239)
T ss_pred             EEEEee
Confidence            999986

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.55  E-value=7.5e-14  Score=117.57  Aligned_cols=129  Identities=12%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +.+.+...++.+|||+|||+|.++             ..++.                   ....++++|+|+.+++.++
T Consensus        22 l~~~~~~~~~~~vLDiGcG~G~~a-------------~~la~-------------------~g~~V~~iD~s~~~l~~a~   69 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQGRNS-------------LYLSL-------------------AGYDVRAWDHNPASIASVL   69 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHH
Confidence            334445555679999999999988             33333                   3568999999999999998


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHH
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAY  192 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~  192 (241)
                      +++.                         ..++.   +.....|+...+.+ ++||+|+++.++++++  +....+++++
T Consensus        70 ~~~~-------------------------~~~~~---v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~  120 (195)
T TIGR00477        70 DMKA-------------------------RENLP---LRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQ  120 (195)
T ss_pred             HHHH-------------------------HhCCC---ceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHH
Confidence            8776                         43433   55666776655543 5799999999998774  5678999999


Q ss_pred             HhccCCcEEEEEec----------------CHHHHHHHHHHCCCceEEEE
Q psy1420         193 RVLKPGGRFLCLEF----------------SHEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       193 ~~LkpgG~l~i~~~----------------~~~~~~~~l~~~Gf~~~~~~  226 (241)
                      ++|||||++++.++                +.+++.+.+.  +|+++...
T Consensus       121 ~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~  168 (195)
T TIGR00477       121 AHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN  168 (195)
T ss_pred             HHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence            99999999766532                1177777775  57777666

Part of a tellurite-reducing operon tehA and tehB

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.54  E-value=1.2e-13  Score=120.42  Aligned_cols=111  Identities=12%  Similarity=0.081  Sum_probs=89.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.++..+...++.+|||+|||+|.++             ..+..    .             .+..+++++|+|+.++
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~~~~~v~gvD~s~~~i   68 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNST-------------ELLVE----R-------------WPAARITGIDSSPAML   68 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHH
Confidence            3456667777778889999999999988             33332    1             0246899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.++++..                                ++.+..+|+.... +..+||+|+++.++++++++..++++
T Consensus        69 ~~a~~~~~--------------------------------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~  115 (258)
T PRK01683         69 AEARSRLP--------------------------------DCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPR  115 (258)
T ss_pred             HHHHHhCC--------------------------------CCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHH
Confidence            99886643                                4677888887654 34589999999999999999999999


Q ss_pred             HHHhccCCcEEEEE
Q psy1420         191 AYRVLKPGGRFLCL  204 (241)
Q Consensus       191 ~~~~LkpgG~l~i~  204 (241)
                      ++++|||||.+++.
T Consensus       116 ~~~~LkpgG~~~~~  129 (258)
T PRK01683        116 LVSLLAPGGVLAVQ  129 (258)
T ss_pred             HHHhcCCCcEEEEE
Confidence            99999999999885

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.53  E-value=4.9e-13  Score=114.83  Aligned_cols=166  Identities=16%  Similarity=0.237  Sum_probs=117.0

Q ss_pred             hHHHHHhhhhhccc-cchhhhhh-hhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYD-TMNDAMSF-GIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         4 ~~~~~f~~~~~~yd-~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      .....|+.++..|. .....-.. .......+.+...+...++.+|||+|||+|..+             ..+..     
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-----   68 (233)
T PRK05134          7 AEIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILS-------------ESMAR-----   68 (233)
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHH-------------HHHHH-----
Confidence            45677888888553 32111111 001111234444445667889999999999887             33333     


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                                    ....++++|+++.+++.+.++..                         ..+.   .+++...++..
T Consensus        69 --------------~~~~v~~iD~s~~~~~~a~~~~~-------------------------~~~~---~~~~~~~~~~~  106 (233)
T PRK05134         69 --------------LGADVTGIDASEENIEVARLHAL-------------------------ESGL---KIDYRQTTAEE  106 (233)
T ss_pred             --------------cCCeEEEEcCCHHHHHHHHHHHH-------------------------HcCC---ceEEEecCHHH
Confidence                          24579999999999999888765                         2222   35666777665


Q ss_pred             CC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC--------------------------------H
Q psy1420         162 LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS--------------------------------H  208 (241)
Q Consensus       162 ~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--------------------------------~  208 (241)
                      .+ ...++||+|+++.++++.+++...++.+.+.|+|||.+++....                                .
T Consensus       107 ~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (233)
T PRK05134        107 LAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKP  186 (233)
T ss_pred             hhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCH
Confidence            54 23468999999999999999999999999999999999886431                                1


Q ss_pred             HHHHHHHHHCCCceEEEEEec
Q psy1420         209 EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       209 ~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++.++++++||.++......
T Consensus       187 ~~~~~~l~~~Gf~~v~~~~~~  207 (233)
T PRK05134        187 SELAAWLRQAGLEVQDITGLH  207 (233)
T ss_pred             HHHHHHHHHCCCeEeeeeeEE
Confidence            679999999999998776443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=1e-13  Score=122.42  Aligned_cols=137  Identities=20%  Similarity=0.328  Sum_probs=114.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.++.+||++|||+|||.|.++             +.++.                  ..+.+++|+++|+++.+
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~-------------~~aA~------------------~y~v~V~GvTlS~~Q~~  109 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLA-------------IYAAE------------------EYGVTVVGVTLSEEQLA  109 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHH-------------HHHHH------------------HcCCEEEEeeCCHHHHH
Confidence            567788889999999999999999988             44444                  24689999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~  189 (241)
                      .+++++.                         +.++. ++++++-.|...+.   ++||.|++...++|+..  ....++
T Consensus       110 ~~~~r~~-------------------------~~gl~-~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~  160 (283)
T COG2230         110 YAEKRIA-------------------------ARGLE-DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFK  160 (283)
T ss_pred             HHHHHHH-------------------------HcCCC-cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHH
Confidence            9999888                         67776 68889888888774   44999999999999865  899999


Q ss_pred             HHHHhccCCcEEEEEecCH-------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH-------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~-------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .++++|+|||++++-+...                         .++.+..+++||.+.+.+.+
T Consensus       161 ~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~  224 (283)
T COG2230         161 KVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESL  224 (283)
T ss_pred             HHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence            9999999999998754322                         67777788999988776654

>PRK06202 hypothetical protein; Provisional

Probab=99.51  E-value=3.3e-13  Score=116.17  Aligned_cols=141  Identities=18%  Similarity=0.271  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      ...+...+...+...++.+|||+|||+|..+             ..++.    .....         ....+++++|+++
T Consensus        45 ~~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~-------------~~L~~----~~~~~---------g~~~~v~gvD~s~   98 (232)
T PRK06202         45 RGLYRRLLRPALSADRPLTLLDIGCGGGDLA-------------IDLAR----WARRD---------GLRLEVTAIDPDP   98 (232)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEeccCCCHHH-------------HHHHH----HHHhC---------CCCcEEEEEcCCH
Confidence            3444444444444456779999999999987             33322    11111         0245899999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--H
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--D  185 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~  185 (241)
                      .|++.++++..                         .     .++.+...+...++.++++||+|+++.++||+++.  .
T Consensus        99 ~~l~~a~~~~~-------------------------~-----~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~  148 (232)
T PRK06202         99 RAVAFARANPR-------------------------R-----PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVV  148 (232)
T ss_pred             HHHHHHHhccc-------------------------c-----CCCeEEEEecccccccCCCccEEEECCeeecCChHHHH
Confidence            99999987654                         1     13455566666665556799999999999999875  4


Q ss_pred             HHHHHHHHhccCCcEEEEEecCH-----------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420         186 KALSEAYRVLKPGGRFLCLEFSH-----------------------------------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~~~-----------------------------------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .+++++.++++  |.+++.++..                                   +++.+++++ ||++...-.
T Consensus       149 ~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~  222 (232)
T PRK06202        149 RLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQWP  222 (232)
T ss_pred             HHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEeccc
Confidence            79999999998  4555544332                                   788888888 998665543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.50  E-value=4.6e-13  Score=119.98  Aligned_cols=135  Identities=16%  Similarity=0.284  Sum_probs=105.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.....++.+|||+|||+|..+             ..++.       ..          +..+++++|. +.+++
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~-------------~~~~~-------~~----------p~~~~~~~D~-~~~~~  186 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDIS-------------AAMLK-------HF----------PELDSTILNL-PGAID  186 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHH-------------HHHHH-------HC----------CCCEEEEEec-HHHHH
Confidence            455566666677889999999999988             44443       11          3467899997 78899


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~  189 (241)
                      .+++++.                         +.++. ++++++.+|+.+.+++.  +|+|+++.++|++++.  .++++
T Consensus       187 ~a~~~~~-------------------------~~gl~-~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~  238 (306)
T TIGR02716       187 LVNENAA-------------------------EKGVA-DRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCK  238 (306)
T ss_pred             HHHHHHH-------------------------hCCcc-ceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHH
Confidence            9988887                         55655 57999999988765543  6999999999987654  58999


Q ss_pred             HHHHhccCCcEEEEEecCH------------------------------HHHHHHHHHCCCceEEE
Q psy1420         190 EAYRVLKPGGRFLCLEFSH------------------------------EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~------------------------------~~~~~~l~~~Gf~~~~~  225 (241)
                      ++++.|+|||++++.++..                              +++.++++++||+.+++
T Consensus       239 ~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~  304 (306)
T TIGR02716       239 KAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM  304 (306)
T ss_pred             HHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence            9999999999999986411                              57899999999987764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.46  E-value=1.8e-12  Score=107.35  Aligned_cols=128  Identities=18%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|..+             ..+..                   ...+++++|+++.+++.+++++. 
T Consensus        16 ~~~~~~~vLdlG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~~-   62 (179)
T TIGR00537        16 RELKPDDVLEIGAGTGLVA-------------IRLKG-------------------KGKCILTTDINPFAVKELRENAK-   62 (179)
T ss_pred             HhcCCCeEEEeCCChhHHH-------------HHHHh-------------------cCCEEEEEECCHHHHHHHHHHHH-
Confidence            3345668999999999988             44433                   22379999999999999999876 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc----------------
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR----------------  183 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~----------------  183 (241)
                                              ..+.   ++++..+|....+  .++||+|+++..+++.++                
T Consensus        63 ------------------------~~~~---~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~  113 (179)
T TIGR00537        63 ------------------------LNNV---GLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGK  113 (179)
T ss_pred             ------------------------HcCC---ceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCC
Confidence                                    3332   3677888876643  358999999866654332                


Q ss_pred             -----HHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEec
Q psy1420         184 -----IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       184 -----~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                           ...+++++.++|||||.+++.....   .++.+.+++.||+........
T Consensus       114 ~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~  167 (179)
T TIGR00537       114 DGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG  167 (179)
T ss_pred             chHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence                 3578999999999999998876554   688999999999987776653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.46  E-value=2.9e-12  Score=109.08  Aligned_cols=127  Identities=20%  Similarity=0.297  Sum_probs=100.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..+..                   ....++++|+++.+++.++.++.    
T Consensus        45 ~~~~vLdlG~G~G~~~-------------~~l~~-------------------~~~~v~~iD~s~~~~~~a~~~~~----   88 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLS-------------EPLAR-------------------LGANVTGIDASEENIEVAKLHAK----   88 (224)
T ss_pred             CCCeEEEECCCCCHHH-------------HHHHh-------------------cCCeEEEEeCCHHHHHHHHHHHH----
Confidence            4779999999999987             33333                   23469999999999999988776    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                           ..+..  ++++...|+.+.+.. .++||+|++...+++..++...++.+.++|+|||.+
T Consensus        89 ---------------------~~~~~--~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l  145 (224)
T TIGR01983        89 ---------------------KDPLL--KIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL  145 (224)
T ss_pred             ---------------------HcCCC--ceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEE
Confidence                                 32221  467777887766533 368999999999999999999999999999999998


Q ss_pred             EEEecC--------------------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFS--------------------------------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++....                                ..++.++++++||+++++...
T Consensus       146 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~~  204 (224)
T TIGR01983       146 FFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKGL  204 (224)
T ss_pred             EEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeeeE
Confidence            876421                                156889999999999887744

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.45  E-value=6.6e-13  Score=119.81  Aligned_cols=166  Identities=16%  Similarity=0.148  Sum_probs=108.9

Q ss_pred             chHHHHHhhh-----hhccccchhhhhhhhH-----HHHHHHHHhhcCC---CCCCeEEEEecCCCcchhHHHHHHhhhh
Q psy1420           3 LPMYEVFENV-----AKSYDTMNDAMSFGIH-----RLWKDIFIDRLGP---THDTKLLDVAGGTDPLANLLFVLRAYDQ   69 (241)
Q Consensus         3 ~~~~~~f~~~-----~~~yd~~~~~~~~~~~-----~~~~~~~~~~l~~---~~~~~vLdvG~G~G~~~~~~~~~~~~~~   69 (241)
                      +.++++|+.+     +..|+..+...+..+.     ..+.+.+++.+..   .++.+|||+|||+|..+           
T Consensus        91 ~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a-----------  159 (315)
T PLN02585         91 EVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLA-----------  159 (315)
T ss_pred             HHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHH-----------
Confidence            4677888876     3455554333332222     2333445555542   35779999999999988           


Q ss_pred             hhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccC---
Q psy1420          70 YSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKID---  146 (241)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  146 (241)
                        ..+..                   ....++++|+|+.|++.++++..                         ...   
T Consensus       160 --~~la~-------------------~g~~V~gvD~S~~ml~~A~~~~~-------------------------~~~~~~  193 (315)
T PLN02585        160 --IPLAL-------------------EGAIVSASDISAAMVAEAERRAK-------------------------EALAAL  193 (315)
T ss_pred             --HHHHH-------------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hccccc
Confidence              44444                   34679999999999999998876                         211   


Q ss_pred             CCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcEEEEEec------------------
Q psy1420         147 IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF------------------  206 (241)
Q Consensus       147 ~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~------------------  206 (241)
                      ....++++...|+..+   .++||+|+|..+++|+++.  ...++.+.+ +.++|.++....                  
T Consensus       194 ~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~  269 (315)
T PLN02585        194 PPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGP  269 (315)
T ss_pred             ccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCC
Confidence            0112467777887654   4689999999998887653  345666664 455555443210                  


Q ss_pred             ---------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         207 ---------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       207 ---------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                               +.++++++++++||++...+...
T Consensus       270 ~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~  301 (315)
T PLN02585        270 SKATRAYLHAEADVERALKKAGWKVARREMTA  301 (315)
T ss_pred             CcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence                     12889999999999987666443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.45  E-value=1.9e-12  Score=110.57  Aligned_cols=129  Identities=13%  Similarity=0.168  Sum_probs=95.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.++++..   
T Consensus        62 ~~~~~vLDvGcG~G~~~-------------~~l~~-------------------~~~~v~~~D~s~~~i~~a~~~~~---  106 (230)
T PRK07580         62 LTGLRILDAGCGVGSLS-------------IPLAR-------------------RGAKVVASDISPQMVEEARERAP---  106 (230)
T ss_pred             CCCCEEEEEeCCCCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHHHH---
Confidence            56779999999999987             44433                   23469999999999999998876   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG  199 (241)
                                            ..+.. .++.+..+|+..   ..++||+|++..+++++++  ....++.+.+.+++++
T Consensus       107 ----------------------~~~~~-~~i~~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        107 ----------------------EAGLA-GNITFEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             ----------------------hcCCc-cCcEEEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence                                  43432 367888888433   3568999999999987664  4678888888776555


Q ss_pred             EEEEEec--------------------------CHHHHHHHHHHCCCceEEEEEecCc
Q psy1420         200 RFLCLEF--------------------------SHEEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       200 ~l~i~~~--------------------------~~~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      .+.+...                          +..++.++++++||++........|
T Consensus       161 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  218 (230)
T PRK07580        161 IFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG  218 (230)
T ss_pred             EEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence            5443211                          1167899999999999988876544

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=1.3e-12  Score=116.03  Aligned_cols=139  Identities=18%  Similarity=0.198  Sum_probs=104.7

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +++...+..-.|.+|||||||.|+.+             .+++.                  .....++|+|+++.....
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~-------------frM~~------------------~GA~~ViGiDP~~lf~~Q  153 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYS-------------FRMLG------------------RGAKSVIGIDPSPLFYLQ  153 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHH-------------HHHhh------------------cCCCEEEEECCChHHHHH
Confidence            44666666667889999999999988             55554                  134569999999886644


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      ......                         -.+.. ..+..+...++.+|. .+.||+|+|..++.|..+|...|..++
T Consensus       154 F~~i~~-------------------------~lg~~-~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk  206 (315)
T PF08003_consen  154 FEAIKH-------------------------FLGQD-PPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLK  206 (315)
T ss_pred             HHHHHH-------------------------HhCCC-ccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHH
Confidence            322211                         01111 234455567788876 678999999999999999999999999


Q ss_pred             HhccCCcEEEEEecC--------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         193 RVLKPGGRFLCLEFS--------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~--------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ..|+|||.|++-+..                          ...+..+++++||..+++.+.+
T Consensus       207 ~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~  269 (315)
T PF08003_consen  207 DSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS  269 (315)
T ss_pred             HhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence            999999999974421                          1999999999999998887653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.45  E-value=3.6e-12  Score=106.38  Aligned_cols=127  Identities=15%  Similarity=0.250  Sum_probs=95.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.    .             ....+++++|.++.+++.+++++.    
T Consensus        42 ~~~~vLDiGcGtG~~s-------------~~la~----~-------------~~~~~V~~iD~s~~~~~~a~~~~~----   87 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPG-------------IPLAI----A-------------RPELKLTLLESNHKKVAFLREVKA----   87 (181)
T ss_pred             CCCeEEEecCCCCccH-------------HHHHH----H-------------CCCCeEEEEeCcHHHHHHHHHHHH----
Confidence            4779999999999988             33222    0             024679999999999999998887    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                           +.++.  +++++++|+.+.+ ..++||+|++..    +.++...++.+.++|+|||+++
T Consensus        88 ---------------------~~~~~--~i~~i~~d~~~~~-~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lv  139 (181)
T TIGR00138        88 ---------------------ELGLN--NVEIVNGRAEDFQ-HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFL  139 (181)
T ss_pred             ---------------------HhCCC--CeEEEecchhhcc-ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEE
Confidence                                 55554  5899999998864 356899998854    4456678888999999999998


Q ss_pred             EEecCH--HHHHHHHHH---CCCceEEEEEecCc
Q psy1420         203 CLEFSH--EEFKSMIES---AGFQYVTYENLTFG  231 (241)
Q Consensus       203 i~~~~~--~~~~~~l~~---~Gf~~~~~~~~~~~  231 (241)
                      +..-..  .++..+.+.   .||+.++....+..
T Consensus       140 i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  173 (181)
T TIGR00138       140 AYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP  173 (181)
T ss_pred             EEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence            865333  555555555   89998888876543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14968 putative methyltransferase; Provisional

Probab=99.44  E-value=4.1e-12  Score=104.89  Aligned_cols=142  Identities=23%  Similarity=0.281  Sum_probs=100.7

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.+++++.  
T Consensus        21 ~~~~~~vLd~G~G~G~~~-------------~~l~~-------------------~~~~v~~~D~s~~~~~~a~~~~~--   66 (188)
T PRK14968         21 DKKGDRVLEVGTGSGIVA-------------IVAAK-------------------NGKKVVGVDINPYAVECAKCNAK--   66 (188)
T ss_pred             ccCCCEEEEEccccCHHH-------------HHHHh-------------------hcceEEEEECCHHHHHHHHHHHH--
Confidence            356779999999999988             44443                   24679999999999999988876  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc--------------------
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN--------------------  180 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~--------------------  180 (241)
                                             ..+..+..+.++..|..+. ..+.+||+|+++.....                    
T Consensus        67 -----------------------~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~  122 (188)
T PRK14968         67 -----------------------LNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKD  122 (188)
T ss_pred             -----------------------HcCCCCcceEEEecccccc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcC
Confidence                                   3333312266777776553 33457999997643321                    


Q ss_pred             -cccHHHHHHHHHHhccCCcEEEEEecC---HHHHHHHHHHCCCceEEEEE--ecCceeEEEeeec
Q psy1420         181 -VTRIDKALSEAYRVLKPGGRFLCLEFS---HEEFKSMIESAGFQYVTYEN--LTFGVVAIHSGFK  240 (241)
Q Consensus       181 -~~~~~~~l~~~~~~LkpgG~l~i~~~~---~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~~~~  240 (241)
                       ...+..+++.+.++|||||.+++...+   .+.+.++++++||++..+..  ..++.+.+..++|
T Consensus       123 ~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T PRK14968        123 GREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK  188 (188)
T ss_pred             hHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence             112467899999999999998776443   38899999999998776544  3456655555543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=1.2e-12  Score=116.55  Aligned_cols=121  Identities=21%  Similarity=0.265  Sum_probs=93.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|.++             ..++.                   .+.+++++|+|+.+++.+++++.    
T Consensus       120 ~~~~vLDlGcG~G~~~-------------~~la~-------------------~g~~V~avD~s~~ai~~~~~~~~----  163 (287)
T PRK12335        120 KPGKALDLGCGQGRNS-------------LYLAL-------------------LGFDVTAVDINQQSLENLQEIAE----  163 (287)
T ss_pred             CCCCEEEeCCCCCHHH-------------HHHHH-------------------CCCEEEEEECCHHHHHHHHHHHH----
Confidence            4459999999999988             33333                   35689999999999999998877    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~  200 (241)
                                           ..++   ++++...|+...+. +++||+|++..++++++  +...+++++.++|+|||+
T Consensus       164 ---------------------~~~l---~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~  218 (287)
T PRK12335        164 ---------------------KENL---NIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGY  218 (287)
T ss_pred             ---------------------HcCC---ceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence                                 4443   36777778776554 57899999999998775  567899999999999999


Q ss_pred             EEEEe----------------cCHHHHHHHHHHCCCceEEEE
Q psy1420         201 FLCLE----------------FSHEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       201 l~i~~----------------~~~~~~~~~l~~~Gf~~~~~~  226 (241)
                      +++..                ++.+++++.+..  |+++++.
T Consensus       219 ~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~  258 (287)
T PRK12335        219 NLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN  258 (287)
T ss_pred             EEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence            76643                112778887754  8887764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.44  E-value=1.1e-12  Score=111.05  Aligned_cols=131  Identities=18%  Similarity=0.147  Sum_probs=97.9

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +.+.+.. ++.+|||+|||+|..+             ..++.    ..             +...++++|+++.+++.+.
T Consensus        33 ~~~~~~~-~~~~VLDiGcGtG~~~-------------~~la~----~~-------------p~~~v~gVD~s~~~i~~a~   81 (202)
T PRK00121         33 WAELFGN-DAPIHLEIGFGKGEFL-------------VEMAK----AN-------------PDINFIGIEVHEPGVGKAL   81 (202)
T ss_pred             HHHHcCC-CCCeEEEEccCCCHHH-------------HHHHH----HC-------------CCccEEEEEechHHHHHHH
Confidence            3344444 5679999999999988             33322    10             2457999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCC--CCCCceeEEeeeehhhccc--------c
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELP--IESDSYSAYTIAFGIRNVT--------R  183 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~V~~~~~l~~~~--------~  183 (241)
                      +++.                         ..++.  +++++++|+ ..++  +++++||+|++.+...+..        .
T Consensus        82 ~~~~-------------------------~~~~~--~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~  134 (202)
T PRK00121         82 KKIE-------------------------EEGLT--NLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLV  134 (202)
T ss_pred             HHHH-------------------------HcCCC--CEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccC
Confidence            8877                         44443  688999998 6655  5567899999876543221        1


Q ss_pred             HHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceE
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYV  223 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~  223 (241)
                      ...+++++.++|||||++++.....   .++.+.+++.|+...
T Consensus       135 ~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        135 QPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             CHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence            4689999999999999999976555   678888899998644

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.43  E-value=1.5e-12  Score=123.23  Aligned_cols=136  Identities=12%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+++.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++
T Consensus        26 ~~~il~~l~~~~~~~vLDlGcG~G~~~-------------~~la~-------------------~~~~v~giD~s~~~l~   73 (475)
T PLN02336         26 RPEILSLLPPYEGKSVLELGAGIGRFT-------------GELAK-------------------KAGQVIALDFIESVIK   73 (475)
T ss_pred             hhHHHhhcCccCCCEEEEeCCCcCHHH-------------HHHHh-------------------hCCEEEEEeCCHHHHH
Confidence            455666666667779999999999998             44443                   2457999999999998


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC--CCCCCCCceeEEeeeehhhcccc--HHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTR--IDKA  187 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~V~~~~~l~~~~~--~~~~  187 (241)
                      .+.....                           ..  +++.+++.|+.  ..+++.++||+|++.++++++++  ...+
T Consensus        74 ~a~~~~~---------------------------~~--~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~  124 (475)
T PLN02336         74 KNESING---------------------------HY--KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENL  124 (475)
T ss_pred             HHHHHhc---------------------------cC--CceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHH
Confidence            7654321                           11  36788888886  35666789999999999999877  5789


Q ss_pred             HHHHHHhccCCcEEEEEecC------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420         188 LSEAYRVLKPGGRFLCLEFS------------------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~------------------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++++.++|||||++++.+..                  ...+.+++.++||...+...+
T Consensus       125 l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  183 (475)
T PLN02336        125 AERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSF  183 (475)
T ss_pred             HHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEE
Confidence            99999999999999886421                  188889999999987655544

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.43  E-value=4.7e-12  Score=105.55  Aligned_cols=138  Identities=15%  Similarity=0.193  Sum_probs=102.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ...+..+...+...++.+|||+|||+|..+             ..++.    .   .          ...+++++|+++.
T Consensus        17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~-------------~~la~----~---~----------~~~~v~~vD~s~~   66 (187)
T PRK08287         17 EEVRALALSKLELHRAKHLIDVGAGTGSVS-------------IEAAL----Q---F----------PSLQVTAIERNPD   66 (187)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCcCCHHH-------------HHHHH----H---C----------CCCEEEEEECCHH
Confidence            345566667777778889999999999988             33332    0   0          2468999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      +++.+++++.                         +.++.  +++++.+|... +. .++||+|++.....   .....+
T Consensus        67 ~~~~a~~n~~-------------------------~~~~~--~i~~~~~d~~~-~~-~~~~D~v~~~~~~~---~~~~~l  114 (187)
T PRK08287         67 ALRLIKENRQ-------------------------RFGCG--NIDIIPGEAPI-EL-PGKADAIFIGGSGG---NLTAII  114 (187)
T ss_pred             HHHHHHHHHH-------------------------HhCCC--CeEEEecCchh-hc-CcCCCEEEECCCcc---CHHHHH
Confidence            9999998887                         44443  57888887642 23 35799999875443   456788


Q ss_pred             HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.+.+.|+|||++++.....   .++.+++++.||..++....
T Consensus       115 ~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  157 (187)
T PRK08287        115 DWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQL  157 (187)
T ss_pred             HHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEE
Confidence            99999999999998865333   77888999999977665444

>PRK04266 fibrillarin; Provisional

Probab=99.43  E-value=5.2e-12  Score=109.04  Aligned_cols=137  Identities=17%  Similarity=0.169  Sum_probs=97.7

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+..+++.+|||+|||+|.++             ..++.    ..             ....++++|+++.|++.+.+.+
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~-------------~~la~----~v-------------~~g~V~avD~~~~ml~~l~~~a  116 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTV-------------SHVSD----IV-------------EEGVVYAVEFAPRPMRELLEVA  116 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHH-------------HHHHH----hc-------------CCCeEEEEECCHHHHHHHHHHh
Confidence            467789999999999999988             33333    11             1347999999999999877766


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccH---HHHHHH
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRI---DKALSE  190 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~---~~~l~~  190 (241)
                      .                         +.    .++.++.+|+...    +. .++||+|++.     ++++   ..++++
T Consensus       117 ~-------------------------~~----~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d-----~~~p~~~~~~L~~  161 (226)
T PRK04266        117 E-------------------------ER----KNIIPILADARKPERYAHV-VEKVDVIYQD-----VAQPNQAEIAIDN  161 (226)
T ss_pred             h-------------------------hc----CCcEEEECCCCCcchhhhc-cccCCEEEEC-----CCChhHHHHHHHH
Confidence            5                         21    2577778887642    12 3569999853     3333   356899


Q ss_pred             HHHhccCCcEEEE------EecCH------HHHHHHHHHCCCceEEEEEecC--ceeEEEeee
Q psy1420         191 AYRVLKPGGRFLC------LEFSH------EEFKSMIESAGFQYVTYENLTF--GVVAIHSGF  239 (241)
Q Consensus       191 ~~~~LkpgG~l~i------~~~~~------~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~  239 (241)
                      ++++|||||++++      .++..      ++..++++++||+.++..+...  ..+.+.+++
T Consensus       162 ~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~  224 (226)
T PRK04266        162 AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR  224 (226)
T ss_pred             HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence            9999999999999      44333      3456999999999999888742  235555554

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.41  E-value=7.5e-14  Score=104.32  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=59.4

Q ss_pred             EEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccc
Q psy1420          48 LDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSY  127 (241)
Q Consensus        48 LdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~  127 (241)
                      ||+|||+|..+             ..++.    .             .+..+++++|+|+.+++.++++..         
T Consensus         1 LdiGcG~G~~~-------------~~l~~----~-------------~~~~~~~~~D~s~~~l~~a~~~~~---------   41 (99)
T PF08242_consen    1 LDIGCGTGRLL-------------RALLE----E-------------LPDARYTGVDISPSMLERARERLA---------   41 (99)
T ss_dssp             -EESTTTS-TT-------------TTHHH----H-------------C-EEEEEEEESSSSTTSTTCCCHH---------
T ss_pred             CEeCccChHHH-------------HHHHH----h-------------CCCCEEEEEECCHHHHHHHHHHhh---------
Confidence            79999999998             44444    1             035689999999999988877766         


Q ss_pred             cccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         128 SAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                      +....  .......+..+..  ...++||+|++..++++++++..+++.++++|||||+|
T Consensus        42 ----------------~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   42 ----------------ELGND--NFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ----------------HCT-----EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             ----------------hcCCc--ceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence                            22211  2233333333321  11258999999999999999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.40  E-value=3.9e-12  Score=117.69  Aligned_cols=131  Identities=15%  Similarity=0.193  Sum_probs=98.4

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++.+..+++.+|||+|||+|..+             ..++.                  ....+++++|+|+.+++.
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a-------------~~la~------------------~~g~~V~giDlS~~~l~~  205 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLA-------------RYAAE------------------HYGVSVVGVTISAEQQKL  205 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHH-------------HHHHH------------------HCCCEEEEEeCCHHHHHH
Confidence            44556677788999999999999988             33333                  134589999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~  190 (241)
                      +++++.                         .  .   .+++...|...+   +++||+|++...++++.  ++...+++
T Consensus       206 A~~~~~-------------------------~--l---~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~  252 (383)
T PRK11705        206 AQERCA-------------------------G--L---PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV  252 (383)
T ss_pred             HHHHhc-------------------------c--C---eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence            998765                         1  1   256677776654   36799999999888875  45789999


Q ss_pred             HHHhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.++|||||++++.++..                        .++...++ .||.+.+++++
T Consensus       253 i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~  313 (383)
T PRK11705        253 VRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNF  313 (383)
T ss_pred             HHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecC
Confidence            999999999999865322                        45555544 57887777654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.40  E-value=1.7e-12  Score=114.39  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=88.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc--
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE--  119 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--  119 (241)
                      .++.+|+|+|||||..+             ..++-.+.+......        ....+++|+|+|+.+++.|++.+..  
T Consensus        98 ~~~~ri~d~GCgtGee~-------------YslA~~l~e~~~~~~--------~~~~~I~g~Dis~~~L~~Ar~~~y~~~  156 (264)
T smart00138       98 GRRVRIWSAGCSTGEEP-------------YSLAMLLAETLPKAR--------EPDVKILATDIDLKALEKARAGIYPER  156 (264)
T ss_pred             CCCEEEEeccccCChHH-------------HHHHHHHHHHhhhcC--------CCCeEEEEEECCHHHHHHHHcCCCCHH
Confidence            45679999999999876             222222222211110        0246899999999999999876430  


Q ss_pred             ----CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420         120 ----LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYR  193 (241)
Q Consensus       120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~  193 (241)
                          +|..   + ...+.....+.... +..+. .++.|.+.|+...+.+.++||+|+|.+++++++++  .++++++++
T Consensus       157 ~~~~~~~~---~-~~~yf~~~~~~~~v-~~~ir-~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~  230 (264)
T smart00138      157 ELEDLPKA---L-LARYFSRVEDKYRV-KPELK-ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE  230 (264)
T ss_pred             HHhcCCHH---H-HhhhEEeCCCeEEE-ChHHh-CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH
Confidence                0000   0 00011011111111 11222 36889999999887767899999999999998654  589999999


Q ss_pred             hccCCcEEEEEe
Q psy1420         194 VLKPGGRFLCLE  205 (241)
Q Consensus       194 ~LkpgG~l~i~~  205 (241)
                      .|+|||+|++..
T Consensus       231 ~L~pGG~L~lg~  242 (264)
T smart00138      231 ALKPGGYLFLGH  242 (264)
T ss_pred             HhCCCeEEEEEC
Confidence            999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.39  E-value=1.2e-11  Score=104.25  Aligned_cols=134  Identities=17%  Similarity=0.308  Sum_probs=99.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      .+...+..+...++.+|||+|||+|..+             ..++..++                ...+++++|+++.++
T Consensus        28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s-------------~~~a~~~~----------------~~~~v~avD~~~~~~   78 (198)
T PRK00377         28 IRALALSKLRLRKGDMILDIGCGTGSVT-------------VEASLLVG----------------ETGKVYAVDKDEKAI   78 (198)
T ss_pred             HHHHHHHHcCCCCcCEEEEeCCcCCHHH-------------HHHHHHhC----------------CCCEEEEEECCHHHH
Confidence            3444556677788999999999999988             44333111                246799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      +.+++++.                         ..++. .++.++..|+.+. +...++||+|++..   ...++..+++
T Consensus        79 ~~a~~n~~-------------------------~~g~~-~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~~~l~  129 (198)
T PRK00377         79 NLTRRNAE-------------------------KFGVL-NNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLKEIIS  129 (198)
T ss_pred             HHHHHHHH-------------------------HhCCC-CCeEEEEechhhhHhhcCCCCCEEEECC---CcccHHHHHH
Confidence            99999887                         44533 4678888887653 32246799999854   2356778999


Q ss_pred             HHHHhccCCcEEEEEecCH---HHHHHHHHHCCCce
Q psy1420         190 EAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQY  222 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~  222 (241)
                      .+.++|||||++++.....   .+..+.+++.||..
T Consensus       130 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        130 ASWEIIKKGGRIVIDAILLETVNNALSALENIGFNL  165 (198)
T ss_pred             HHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence            9999999999998744333   67778888999953

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.39  E-value=2.3e-11  Score=101.21  Aligned_cols=139  Identities=23%  Similarity=0.323  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      .+..+...+..+.++|+.+++|+|||||..+             ..++- ++                +..+++++|.++
T Consensus        19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-------------iE~a~-~~----------------p~~~v~AIe~~~   68 (187)
T COG2242          19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-------------IEWAL-AG----------------PSGRVIAIERDE   68 (187)
T ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-------------HHHHH-hC----------------CCceEEEEecCH
Confidence            3456677788889999999999999999999             66551 11                578999999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHH
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA  187 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~  187 (241)
                      .+++..++++.                         +.+++  ++.++.+++.+.-....++|.|+...+    ...+..
T Consensus        69 ~a~~~~~~N~~-------------------------~fg~~--n~~vv~g~Ap~~L~~~~~~daiFIGGg----~~i~~i  117 (187)
T COG2242          69 EALELIERNAA-------------------------RFGVD--NLEVVEGDAPEALPDLPSPDAIFIGGG----GNIEEI  117 (187)
T ss_pred             HHHHHHHHHHH-------------------------HhCCC--cEEEEeccchHhhcCCCCCCEEEECCC----CCHHHH
Confidence            99999999999                         77755  899999997764211227999998876    356788


Q ss_pred             HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCC-ceEEEEE
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGF-QYVTYEN  227 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf-~~~~~~~  227 (241)
                      |+.+-..|||||++++.-...   ....+.+++.|+ +++++..
T Consensus       118 le~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~i  161 (187)
T COG2242         118 LEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQI  161 (187)
T ss_pred             HHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEe
Confidence            999999999999999865444   566788899999 5555443

>PRK06922 hypothetical protein; Provisional

Probab=99.38  E-value=3.3e-12  Score=123.71  Aligned_cols=110  Identities=22%  Similarity=0.281  Sum_probs=85.8

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ....++.+|||+|||+|..+             ..++.    .   .          +...++|+|+|+.|++.++++..
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls-------------~~LA~----~---~----------P~~kVtGIDIS~~MLe~Ararl~  463 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVML-------------DMIEE----E---T----------EDKRIYGIDISENVIDTLKKKKQ  463 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHH-------------HHHHH----h---C----------CCCEEEEEECCHHHHHHHHHHhh
Confidence            34456789999999999877             33322    0   1          35689999999999999988765


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc-------------cc
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV-------------TR  183 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~-------------~~  183 (241)
                                               ..+   .++.++++|+..+|  +++++||+|+++.++|++             .+
T Consensus       464 -------------------------~~g---~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~ed  515 (677)
T PRK06922        464 -------------------------NEG---RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEV  515 (677)
T ss_pred             -------------------------hcC---CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHH
Confidence                                     222   24677889988776  667899999999988864             25


Q ss_pred             HHHHHHHHHHhccCCcEEEEEec
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                      +.+++++++++|||||++++.+.
T Consensus       516 l~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        516 IKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeC
Confidence            67999999999999999999873

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.37  E-value=1.1e-11  Score=95.14  Aligned_cols=116  Identities=20%  Similarity=0.274  Sum_probs=85.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ..+..+.+.+...++.+|||+|||+|..+             ..++.    .             .+..+++++|+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~-------------~~l~~----~-------------~~~~~v~~vD~s~~~   55 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSIT-------------IEAAR----L-------------VPNGRVYAIERNPEA   55 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHH----H-------------CCCceEEEEcCCHHH
Confidence            44566677777777789999999999988             43333    0             024679999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      ++.+++++.                         ..+..  ++++...|+.. .+...++||.|++.....   ...+++
T Consensus        56 ~~~a~~~~~-------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~---~~~~~l  105 (124)
T TIGR02469        56 LRLIERNAR-------------------------RFGVS--NIVIVEGDAPEALEDSLPEPDRVFIGGSGG---LLQEIL  105 (124)
T ss_pred             HHHHHHHHH-------------------------HhCCC--ceEEEeccccccChhhcCCCCEEEECCcch---hHHHHH
Confidence            999998877                         33333  56777777654 222245899999866443   346899


Q ss_pred             HHHHHhccCCcEEEEEe
Q psy1420         189 SEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~  205 (241)
                      +.+++.|||||++++.-
T Consensus       106 ~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469       106 EAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             HHHHHHcCCCCEEEEEe
Confidence            99999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG2361|consensus

Probab=99.36  E-value=5.7e-12  Score=108.22  Aligned_cols=127  Identities=20%  Similarity=0.349  Sum_probs=98.0

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      .+|||+|||.|++.                .|    +++..+.        ....+++.|.||.+++..+++..-     
T Consensus        73 ~~ilEvGCGvGNtv----------------fP----ll~~~~n--------~~l~v~acDfsp~Ai~~vk~~~~~-----  119 (264)
T KOG2361|consen   73 ETILEVGCGVGNTV----------------FP----LLKTSPN--------NRLKVYACDFSPRAIELVKKSSGY-----  119 (264)
T ss_pred             hhheeeccCCCccc----------------ch----hhhcCCC--------CCeEEEEcCCChHHHHHHHhcccc-----
Confidence            38999999999988                56    5555543        357899999999999998876541     


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCC
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPG  198 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~Lkpg  198 (241)
                                             ...++.....|+..    .|.+.+++|.|++.++|..++  ....++.+++++||||
T Consensus       120 -----------------------~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG  176 (264)
T KOG2361|consen  120 -----------------------DESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG  176 (264)
T ss_pred             -----------------------chhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence                                   00133333444433    245678999999999998765  4579999999999999


Q ss_pred             cEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420         199 GRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       199 G~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      |.+++.+++.                                +++.+++.++||..++...
T Consensus       177 G~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~  237 (264)
T KOG2361|consen  177 GSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEV  237 (264)
T ss_pred             cEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccc
Confidence            9999988666                                8999999999998776654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.36  E-value=2.7e-11  Score=101.67  Aligned_cols=124  Identities=16%  Similarity=0.229  Sum_probs=93.0

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+...+-.+++|+|||.|.++             ..+++                   ....++++|+++..++.+++++
T Consensus        38 aLp~~ry~~alEvGCs~G~lT-------------~~LA~-------------------rCd~LlavDis~~Al~~Ar~Rl   85 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLT-------------ERLAP-------------------RCDRLLAVDISPRALARARERL   85 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHH-------------HHHGG-------------------GEEEEEEEES-HHHHHHHHHHT
T ss_pred             hcCccccceeEecCCCccHHH-------------HHHHH-------------------hhCceEEEeCCHHHHHHHHHhc
Confidence            456667789999999999999             66666                   4568999999999999999998


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc---HHHHHHHHHHh
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRV  194 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~  194 (241)
                      .                           +.  +++++.+.++... .+.++||+|+++.+++++.+   ...++..+...
T Consensus        86 ~---------------------------~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~  135 (201)
T PF05401_consen   86 A---------------------------GL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAA  135 (201)
T ss_dssp             T---------------------------T---SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHT
T ss_pred             C---------------------------CC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHH
Confidence            7                           22  3799999998765 45789999999999999865   45789999999


Q ss_pred             ccCCcEEEEEecCH------------HHHHHHHHHCCCceEE
Q psy1420         195 LKPGGRFLCLEFSH------------EEFKSMIESAGFQYVT  224 (241)
Q Consensus       195 LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~  224 (241)
                      |+|||.|++..+..            +.+.+++++. |..++
T Consensus       136 L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~  176 (201)
T PF05401_consen  136 LAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVE  176 (201)
T ss_dssp             EEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEE
T ss_pred             hCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhhee
Confidence            99999999987655            6677777766 44333

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.36  E-value=6.3e-12  Score=113.98  Aligned_cols=136  Identities=20%  Similarity=0.159  Sum_probs=105.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+......+++.+|||+|||+|..+             .....                   ....++++|+++.|++
T Consensus       171 a~~~~~l~~~~~g~~vLDp~cGtG~~l-------------ieaa~-------------------~~~~v~g~Di~~~~~~  218 (329)
T TIGR01177       171 ARAMVNLARVTEGDRVLDPFCGTGGFL-------------IEAGL-------------------MGAKVIGCDIDWKMVA  218 (329)
T ss_pred             HHHHHHHhCCCCcCEEEECCCCCCHHH-------------HHHHH-------------------hCCeEEEEcCCHHHHH
Confidence            445555666788889999999999877             33322                   2457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee--hhhc------c-c
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF--GIRN------V-T  182 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~--~l~~------~-~  182 (241)
                      .++.++.                         ..++.  ++.+..+|+..+|.+.++||+|+++-  +...      . .
T Consensus       219 ~a~~nl~-------------------------~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~  271 (329)
T TIGR01177       219 GARINLE-------------------------HYGIE--DFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLES  271 (329)
T ss_pred             HHHHHHH-------------------------HhCCC--CCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHH
Confidence            9998887                         55554  37888999999887778999999862  2211      1 1


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEE
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      -..++++++.++|||||++++...+..++.+.++++|| ++....
T Consensus       272 l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~-i~~~~~  315 (329)
T TIGR01177       272 LYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR-VVKRFE  315 (329)
T ss_pred             HHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc-chheee
Confidence            25789999999999999999888777889999999999 665544

This family is found exclusively in the Archaea.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.35  E-value=8.7e-12  Score=105.79  Aligned_cols=114  Identities=16%  Similarity=0.181  Sum_probs=86.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+++.+..+++.+|||+|||+|..+             ..+..    .+.            ...+++++|+++.++
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~-------------~~la~----~~~------------~~g~V~~iD~~~~~~  110 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQA-------------AVCAE----AIE------------RRGKVYTVEIVKELA  110 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHH-------------HHHHH----hcC------------CCCEEEEEeCCHHHH
Confidence            3566777777788899999999999988             33332    110            245799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         +.+.. .++++..+|+........+||+|++..++.+++      ++
T Consensus       111 ~~a~~~l~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~  158 (205)
T PRK13944        111 IYAAQNIE-------------------------RLGYW-GVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP------SA  158 (205)
T ss_pred             HHHHHHHH-------------------------HcCCC-CcEEEEECCcccCCccCCCccEEEEccCcchhh------HH
Confidence            99998887                         44443 358889999876543456899999988876554      46


Q ss_pred             HHHhccCCcEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLE  205 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~  205 (241)
                      +.+.|+|||+|++..
T Consensus       159 l~~~L~~gG~lvi~~  173 (205)
T PRK13944        159 LVRQLKDGGVLVIPV  173 (205)
T ss_pred             HHHhcCcCcEEEEEE
Confidence            889999999998743

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.35  E-value=8.5e-13  Score=99.21  Aligned_cols=98  Identities=19%  Similarity=0.336  Sum_probs=73.6

Q ss_pred             EEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcccc
Q psy1420          47 LLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS  126 (241)
Q Consensus        47 vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~  126 (241)
                      |||+|||+|..+             ..+.+    .+..          .+...++++|+++.+++.+++...        
T Consensus         1 ILDlgcG~G~~~-------------~~l~~----~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~--------   45 (101)
T PF13649_consen    1 ILDLGCGTGRVT-------------RALAR----RFDA----------GPSSRVIGVDISPEMLELAKKRFS--------   45 (101)
T ss_dssp             -EEET-TTSHHH-------------HHHHH----HS---------------SEEEEEES-HHHHHHHHHHSH--------
T ss_pred             CEEeecCCcHHH-------------HHHHH----Hhhh----------cccceEEEEECCHHHHHHHHHhch--------
Confidence            799999999988             54444    1100          023789999999999999998876        


Q ss_pred             ccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh-hhcccc--HHHHHHHHHHhccCCc
Q psy1420         127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG-IRNVTR--IDKALSEAYRVLKPGG  199 (241)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~-l~~~~~--~~~~l~~~~~~LkpgG  199 (241)
                                       ..+.   +++++++|+.+++...++||+|++... ++++++  ..++++++.++|+|||
T Consensus        46 -----------------~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   46 -----------------EDGP---KVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             -----------------HTTT---TSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             -----------------hcCC---ceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence                             3232   588999999998877789999999544 888764  5799999999999998

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.34  E-value=1.6e-11  Score=108.31  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|||+|||+|.++             ..+..    .+..          .....++|+|+|+.+++.+.++..   
T Consensus        84 ~~~~~vLDiGcG~G~~~-------------~~l~~----~~~~----------~~~~~v~giD~s~~~l~~A~~~~~---  133 (272)
T PRK11088         84 EKATALLDIGCGEGYYT-------------HALAD----ALPE----------ITTMQLFGLDISKVAIKYAAKRYP---  133 (272)
T ss_pred             CCCCeEEEECCcCCHHH-------------HHHHH----hccc----------ccCCeEEEECCCHHHHHHHHHhCC---
Confidence            35568999999999988             44333    1100          012368999999999999876532   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                                   ++.+..+|+..+|+++++||+|++.+.-       ..++++.|+|||||++
T Consensus       134 -----------------------------~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~l  177 (272)
T PRK11088        134 -----------------------------QVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIV  177 (272)
T ss_pred             -----------------------------CCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEE
Confidence                                         5778899999999888899999986541       2467899999999999


Q ss_pred             EEEecCH
Q psy1420         202 LCLEFSH  208 (241)
Q Consensus       202 ~i~~~~~  208 (241)
                      ++.....
T Consensus       178 i~~~p~~  184 (272)
T PRK11088        178 ITVTPGP  184 (272)
T ss_pred             EEEeCCC
Confidence            9987655

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.32  E-value=2.7e-11  Score=101.93  Aligned_cols=127  Identities=18%  Similarity=0.232  Sum_probs=92.0

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      +.+...+++++||+|||.|.++             .-++.                   .+..|+++|.|+..++.+.+.
T Consensus        24 ~a~~~~~~g~~LDlgcG~GRNa-------------lyLA~-------------------~G~~VtAvD~s~~al~~l~~~   71 (192)
T PF03848_consen   24 EAVPLLKPGKALDLGCGEGRNA-------------LYLAS-------------------QGFDVTAVDISPVALEKLQRL   71 (192)
T ss_dssp             HHCTTS-SSEEEEES-TTSHHH-------------HHHHH-------------------TT-EEEEEESSHHHHHHHHHH
T ss_pred             HHHhhcCCCcEEEcCCCCcHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHHHH
Confidence            3344456779999999999999             33333                   477899999999999999888


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHh
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRV  194 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~  194 (241)
                      +.                         +.+++   ++....|+.+..++ +.||+|++..++++++.  ..+.++.+...
T Consensus        72 a~-------------------------~~~l~---i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~  122 (192)
T PF03848_consen   72 AE-------------------------EEGLD---IRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAA  122 (192)
T ss_dssp             HH-------------------------HTT-T---EEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHT
T ss_pred             Hh-------------------------hcCce---eEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhh
Confidence            77                         55655   88889998887764 68999999888887653  46899999999


Q ss_pred             ccCCcEEEEEecCH----------------HHHHHHHHHCCCceEEEE
Q psy1420         195 LKPGGRFLCLEFSH----------------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       195 LkpgG~l~i~~~~~----------------~~~~~~l~~~Gf~~~~~~  226 (241)
                      ++|||++++..+..                +++.+.+.  |++++++.
T Consensus       123 ~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~  168 (192)
T PF03848_consen  123 TKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYN  168 (192)
T ss_dssp             EEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred             cCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence            99999988754311                66666665  46666554

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.30  E-value=2e-11  Score=104.17  Aligned_cols=113  Identities=14%  Similarity=0.116  Sum_probs=85.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .....+++.+...++.+|||+|||+|..+             ..+...++                ...+++++|+++.+
T Consensus        63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t-------------~~la~~~~----------------~~~~V~~vE~~~~~  113 (212)
T PRK13942         63 HMVAIMCELLDLKEGMKVLEIGTGSGYHA-------------AVVAEIVG----------------KSGKVVTIERIPEL  113 (212)
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHH-------------HHHHHhcC----------------CCCEEEEEeCCHHH
Confidence            34566777778889999999999999988             33332111                24689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.+++++.                         +.+..  ++++..+|......+..+||+|++.....+++      .
T Consensus       114 ~~~a~~~l~-------------------------~~g~~--~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~------~  160 (212)
T PRK13942        114 AEKAKKTLK-------------------------KLGYD--NVEVIVGDGTLGYEENAPYDRIYVTAAGPDIP------K  160 (212)
T ss_pred             HHHHHHHHH-------------------------HcCCC--CeEEEECCcccCCCcCCCcCEEEECCCcccch------H
Confidence            999999987                         44443  68999999876554567899999877654432      3


Q ss_pred             HHHHhccCCcEEEEE
Q psy1420         190 EAYRVLKPGGRFLCL  204 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~  204 (241)
                      .+.+.|||||++++.
T Consensus       161 ~l~~~LkpgG~lvi~  175 (212)
T PRK13942        161 PLIEQLKDGGIMVIP  175 (212)
T ss_pred             HHHHhhCCCcEEEEE
Confidence            567789999998875

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.30  E-value=2.6e-11  Score=103.07  Aligned_cols=100  Identities=11%  Similarity=0.145  Sum_probs=77.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..+..    .+             ....++|+|+|+.+++.++++..   
T Consensus        42 ~~~~~VLDiGCG~G~~~-------------~~L~~----~~-------------~~~~v~giDiS~~~l~~A~~~~~---   88 (204)
T TIGR03587        42 PKIASILELGANIGMNL-------------AALKR----LL-------------PFKHIYGVEINEYAVEKAKAYLP---   88 (204)
T ss_pred             CCCCcEEEEecCCCHHH-------------HHHHH----hC-------------CCCeEEEEECCHHHHHHHHhhCC---
Confidence            35668999999999988             33332    00             24679999999999999986543   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG  199 (241)
                                                   ++.+..+|+.+ |.++++||+|++..+++|++  +..++++++++++  ++
T Consensus        89 -----------------------------~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~  136 (204)
T TIGR03587        89 -----------------------------NINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NR  136 (204)
T ss_pred             -----------------------------CCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--Cc
Confidence                                         35677888777 77778999999999999885  3578899999987  56


Q ss_pred             EEEEEec
Q psy1420         200 RFLCLEF  206 (241)
Q Consensus       200 ~l~i~~~  206 (241)
                      ++++.++
T Consensus       137 ~v~i~e~  143 (204)
T TIGR03587       137 YILIAEY  143 (204)
T ss_pred             EEEEEEe
Confidence            7777664

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.29  E-value=2.3e-11  Score=102.25  Aligned_cols=125  Identities=19%  Similarity=0.210  Sum_probs=92.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      +..++||+|||+|..+             ..++.       .          .+...++++|+++.+++.+.+++.    
T Consensus        16 ~~~~ilDiGcG~G~~~-------------~~la~-------~----------~p~~~v~gvD~~~~~l~~a~~~~~----   61 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFL-------------IDMAK-------Q----------NPDKNFLGIEIHTPIVLAANNKAN----   61 (194)
T ss_pred             CCceEEEeCCCccHHH-------------HHHHH-------h----------CCCCCEEEEEeeHHHHHHHHHHHH----
Confidence            4558999999999988             33332       1          135689999999999999998877    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhcccc--------HHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTR--------IDKALSEA  191 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~--------~~~~l~~~  191 (241)
                                           +.++.  +++++++|+..++   .+.+++|.|++++.-.+...        ...+++++
T Consensus        62 ---------------------~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~  118 (194)
T TIGR00091        62 ---------------------KLGLK--NLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEY  118 (194)
T ss_pred             ---------------------HhCCC--CEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHH
Confidence                                 55554  7899999987643   34458999998765433221        15789999


Q ss_pred             HHhccCCcEEEEEecCH---HHHHHHHHHCC-CceEE
Q psy1420         192 YRVLKPGGRFLCLEFSH---EEFKSMIESAG-FQYVT  224 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~G-f~~~~  224 (241)
                      .++|||||.+++.+-..   +++.+.+.+.+ |....
T Consensus       119 ~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~  155 (194)
T TIGR00091       119 ANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTS  155 (194)
T ss_pred             HHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecc
Confidence            99999999999877665   55566666666 76543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.29  E-value=6.7e-11  Score=103.31  Aligned_cols=120  Identities=19%  Similarity=0.179  Sum_probs=87.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..+..                  .....++++|+++.+++.+++++.   
T Consensus       118 ~~~~~VLDiGcGsG~l~-------------i~~~~------------------~g~~~v~giDis~~~l~~A~~n~~---  163 (250)
T PRK00517        118 LPGKTVLDVGCGSGILA-------------IAAAK------------------LGAKKVLAVDIDPQAVEAARENAE---  163 (250)
T ss_pred             CCCCEEEEeCCcHHHHH-------------HHHHH------------------cCCCeEEEEECCHHHHHHHHHHHH---
Confidence            56789999999999877             32222                  022359999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++. ..+.+..++        .+||+|+++...   ......+.++.++|||||++
T Consensus       164 ----------------------~~~~~-~~~~~~~~~--------~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~l  209 (250)
T PRK00517        164 ----------------------LNGVE-LNVYLPQGD--------LKADVIVANILA---NPLLELAPDLARLLKPGGRL  209 (250)
T ss_pred             ----------------------HcCCC-ceEEEccCC--------CCcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEE
Confidence                                  43332 223332221        269999986432   23457889999999999999


Q ss_pred             EEEecCH---HHHHHHHHHCCCceEEEEEec
Q psy1420         202 LCLEFSH---EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++.....   +++.+.+++.||.+.+.....
T Consensus       210 ilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~  240 (250)
T PRK00517        210 ILSGILEEQADEVLEAYEEAGFTLDEVLERG  240 (250)
T ss_pred             EEEECcHhhHHHHHHHHHHCCCEEEEEEEeC
Confidence            9986655   788889999999988776653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.27  E-value=3.4e-11  Score=99.23  Aligned_cols=125  Identities=18%  Similarity=0.311  Sum_probs=88.2

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+++.+...++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~-------------~~la~--------~---------~~~~~v~~vDi~~~a~~~a   71 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVIS-------------LALAK--------R---------GPDAKVTAVDINPDALELA   71 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHH-------------HHHHH--------T---------STCEEEEEEESBHHHHHHH
T ss_pred             HHHHHHhhccCCeEEEecCChHHHH-------------HHHHH--------h---------CCCCEEEEEcCCHHHHHHH
Confidence            3444444446779999999999888             33322        1         0244699999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc-----HHHHH
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-----IDKAL  188 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~-----~~~~l  188 (241)
                      ++++.                         ..++.  ++++...|..+.. +.++||+|+++--++...+     ..+++
T Consensus        72 ~~n~~-------------------------~n~~~--~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i  123 (170)
T PF05175_consen   72 KRNAE-------------------------RNGLE--NVEVVQSDLFEAL-PDGKFDLIVSNPPFHAGGDDGLDLLRDFI  123 (170)
T ss_dssp             HHHHH-------------------------HTTCT--TEEEEESSTTTTC-CTTCEEEEEE---SBTTSHCHHHHHHHHH
T ss_pred             HHHHH-------------------------hcCcc--ccccccccccccc-cccceeEEEEccchhcccccchhhHHHHH
Confidence            99998                         56655  2888888876642 3679999999876654433     57889


Q ss_pred             HHHHHhccCCcEEEEEecCHHHHHHHHH
Q psy1420         189 SEAYRVLKPGGRFLCLEFSHEEFKSMIE  216 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~~~~~~~l~  216 (241)
                      +.+.++|||||.+++........+..++
T Consensus       124 ~~a~~~Lk~~G~l~lv~~~~~~~~~~l~  151 (170)
T PF05175_consen  124 EQARRYLKPGGRLFLVINSHLGYERLLK  151 (170)
T ss_dssp             HHHHHHEEEEEEEEEEEETTSCHHHHHH
T ss_pred             HHHHHhccCCCEEEEEeecCCChHHHHH
Confidence            9999999999999776555533444443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.26  E-value=1.3e-10  Score=100.30  Aligned_cols=136  Identities=21%  Similarity=0.318  Sum_probs=96.5

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++.+. ..+.+|||+|||+|..+             ..++.    ..             ....++++|+++.+++.
T Consensus        78 ~~~l~~~~-~~~~~ilDig~G~G~~~-------------~~l~~----~~-------------~~~~v~~iD~~~~~~~~  126 (251)
T TIGR03534        78 EAALERLK-KGPLRVLDLGTGSGAIA-------------LALAK----ER-------------PDARVTAVDISPEALAV  126 (251)
T ss_pred             HHHHHhcc-cCCCeEEEEeCcHhHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence            34444443 34458999999999988             33333    10             24579999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc------c-----
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN------V-----  181 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~------~-----  181 (241)
                      +++++.                         ..++.  ++.+.++|+.. +.+.++||+|+++-....      +     
T Consensus       127 a~~~~~-------------------------~~~~~--~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~  178 (251)
T TIGR03534       127 ARKNAA-------------------------RLGLD--NVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVR  178 (251)
T ss_pred             HHHHHH-------------------------HcCCC--eEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhh
Confidence            998887                         44443  58888988866 345678999998532211      1     


Q ss_pred             ---------------ccHHHHHHHHHHhccCCcEEEEEecC--HHHHHHHHHHCCCceEEEEE
Q psy1420         182 ---------------TRIDKALSEAYRVLKPGGRFLCLEFS--HEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       182 ---------------~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~l~~~Gf~~~~~~~  227 (241)
                                     .....++..+.++|+|||.+++....  .+++.++++++||..++...
T Consensus       179 ~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~  241 (251)
T TIGR03534       179 FHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVETRK  241 (251)
T ss_pred             hcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEEEe
Confidence                           11246789999999999999875422  27889999999998776654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.26  E-value=5e-11  Score=101.68  Aligned_cols=112  Identities=12%  Similarity=0.092  Sum_probs=84.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+++.+..+++.+|||+|||+|..+             ..++.    ...            ...+++++|+++.++
T Consensus        65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a-------------~~la~----~~~------------~~g~V~~vD~~~~~~  115 (215)
T TIGR00080        65 MVAMMTELLELKPGMKVLEIGTGSGYQA-------------AVLAE----IVG------------RDGLVVSIERIPELA  115 (215)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCccHHH-------------HHHHH----HhC------------CCCEEEEEeCCHHHH
Confidence            3456777778889999999999999998             33333    100            234699999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         +.++.  +++++.+|.........+||+|++.....++      ...
T Consensus       116 ~~A~~~~~-------------------------~~g~~--~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~------~~~  162 (215)
T TIGR00080       116 EKAERRLR-------------------------KLGLD--NVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI------PEA  162 (215)
T ss_pred             HHHHHHHH-------------------------HCCCC--CeEEEECCcccCCcccCCCCEEEEcCCcccc------cHH
Confidence            99999988                         55554  6889999987654344689999987655443      345


Q ss_pred             HHHhccCCcEEEEE
Q psy1420         191 AYRVLKPGGRFLCL  204 (241)
Q Consensus       191 ~~~~LkpgG~l~i~  204 (241)
                      +.+.|+|||++++.
T Consensus       163 ~~~~L~~gG~lv~~  176 (215)
T TIGR00080       163 LIDQLKEGGILVMP  176 (215)
T ss_pred             HHHhcCcCcEEEEE
Confidence            78899999999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14967 putative methyltransferase; Provisional

Probab=99.26  E-value=1.6e-10  Score=99.06  Aligned_cols=131  Identities=17%  Similarity=0.189  Sum_probs=92.2

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .....++.+|||+|||+|.++             ..+..                  ....+++++|+++.+++.+++++
T Consensus        31 ~~~~~~~~~vLDlGcG~G~~~-------------~~la~------------------~~~~~v~~vD~s~~~l~~a~~n~   79 (223)
T PRK14967         31 AEGLGPGRRVLDLCTGSGALA-------------VAAAA------------------AGAGSVTAVDISRRAVRSARLNA   79 (223)
T ss_pred             hcccCCCCeEEEecCCHHHHH-------------HHHHH------------------cCCCeEEEEECCHHHHHHHHHHH
Confidence            334567789999999999987             33332                  01247999999999999999887


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc----------------
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV----------------  181 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~----------------  181 (241)
                      .                         ..+.   ++.++..|+... .+.++||+|+++-.....                
T Consensus        80 ~-------------------------~~~~---~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~  130 (223)
T PRK14967         80 L-------------------------LAGV---DVDVRRGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDA  130 (223)
T ss_pred             H-------------------------HhCC---eeEEEECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhC
Confidence            6                         3332   366777777653 345689999986322110                


Q ss_pred             -----ccHHHHHHHHHHhccCCcEEEEEec---CHHHHHHHHHHCCCceEEEEEe
Q psy1420         182 -----TRIDKALSEAYRVLKPGGRFLCLEF---SHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       182 -----~~~~~~l~~~~~~LkpgG~l~i~~~---~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                           .....+++.+.++|||||++++...   ...++.+.+++.||........
T Consensus       131 ~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  185 (223)
T PRK14967        131 GPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVVASQ  185 (223)
T ss_pred             CCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEEEee
Confidence                 0145688899999999999988533   3367888888899876665543

>PLN03075 nicotianamine synthase; Provisional

Probab=99.26  E-value=1e-10  Score=104.44  Aligned_cols=145  Identities=15%  Similarity=0.159  Sum_probs=100.6

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|+|+|||.|..+.++            ++       ++.         .+..+++++|.++.+++.|++.+.. 
T Consensus       121 ~~~p~~VldIGcGpgpltaii------------la-------a~~---------~p~~~~~giD~d~~ai~~Ar~~~~~-  171 (296)
T PLN03075        121 NGVPTKVAFVGSGPLPLTSIV------------LA-------KHH---------LPTTSFHNFDIDPSANDVARRLVSS-  171 (296)
T ss_pred             cCCCCEEEEECCCCcHHHHHH------------HH-------Hhc---------CCCCEEEEEeCCHHHHHHHHHHhhh-
Confidence            346779999999988665111            01       011         0456899999999999999998851 


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHHHHHHhccCC
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPG  198 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~~~~~~Lkpg  198 (241)
                                             +.++. ++++|..+|+.+.+...+.||+|++. +++.+  +++.++++.+.+.|+||
T Consensus       172 -----------------------~~gL~-~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPG  226 (296)
T PLN03075        172 -----------------------DPDLS-KRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPG  226 (296)
T ss_pred             -----------------------ccCcc-CCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCC
Confidence                                   24554 57999999998864334689999999 87777  68999999999999999


Q ss_pred             cEEEEEecCH------HHHHHHHHHCCCceEEEEEecCcee-EEEeeec
Q psy1420         199 GRFLCLEFSH------EEFKSMIESAGFQYVTYENLTFGVV-AIHSGFK  240 (241)
Q Consensus       199 G~l~i~~~~~------~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~~~~~  240 (241)
                      |.+++-....      ..+... .-.||+......=+..|+ .+++++|
T Consensus       227 G~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~~~P~~~v~Nsvi~~r~  274 (296)
T PLN03075        227 ALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSVFHPTDEVINSVIIARK  274 (296)
T ss_pred             cEEEEecccchHhhcCCCCChh-hCCCeEEEEEECCCCCceeeEEEEEe
Confidence            9999865211      111111 122888766655544444 3444544

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.25  E-value=3.3e-11  Score=102.75  Aligned_cols=119  Identities=17%  Similarity=0.199  Sum_probs=85.2

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|.++             ..++..++                ....++++|+++ +        .  
T Consensus        49 ~~~~~~VLDlG~GtG~~t-------------~~l~~~~~----------------~~~~V~aVDi~~-~--------~--   88 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWS-------------QYAVTQIG----------------DKGRVIACDILP-M--------D--   88 (209)
T ss_pred             CCCCCEEEEEcccCCHHH-------------HHHHHHcC----------------CCceEEEEeccc-c--------c--
Confidence            367889999999999988             33333111                246899999987 1        1  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeehhhccccH--------
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVTRI--------  184 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~l~~~~~~--------  184 (241)
                                             .  .  +++.++++|+...+        ...++||+|++....+...++        
T Consensus        89 -----------------------~--~--~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~  141 (209)
T PRK11188         89 -----------------------P--I--VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM  141 (209)
T ss_pred             -----------------------C--C--CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHH
Confidence                                   0  0  24778899988753        456789999997655443221        


Q ss_pred             ---HHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHC--CCceEEEE
Q psy1420         185 ---DKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESA--GFQYVTYE  226 (241)
Q Consensus       185 ---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~--Gf~~~~~~  226 (241)
                         ..+|+++.++|||||.+++..+..+.+.+++...  .|..+++.
T Consensus       142 ~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~  188 (209)
T PRK11188        142 YLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVR  188 (209)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEE
Confidence               4689999999999999999888877777777664  67655543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.25  E-value=1e-10  Score=104.24  Aligned_cols=124  Identities=19%  Similarity=0.177  Sum_probs=89.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..+..                  ....+++++|+++.+++.+++++.   
T Consensus       158 ~~g~~VLDvGcGsG~la-------------i~aa~------------------~g~~~V~avDid~~al~~a~~n~~---  203 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILS-------------IAALK------------------LGAAKVVGIDIDPLAVESARKNAE---  203 (288)
T ss_pred             CCCCEEEEeCCChhHHH-------------HHHHH------------------cCCCeEEEEECCHHHHHHHHHHHH---
Confidence            46789999999999877             33322                  023479999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++. .++.+...+...  ...++||+|+++....   ....++.++.++|||||++
T Consensus       204 ----------------------~n~~~-~~~~~~~~~~~~--~~~~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~l  255 (288)
T TIGR00406       204 ----------------------LNQVS-DRLQVKLIYLEQ--PIEGKADVIVANILAE---VIKELYPQFSRLVKPGGWL  255 (288)
T ss_pred             ----------------------HcCCC-cceEEEeccccc--ccCCCceEEEEecCHH---HHHHHHHHHHHHcCCCcEE
Confidence                                  44443 345555554322  2356899999876433   3457889999999999999


Q ss_pred             EEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFSH---EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++....   .++.+.+++. |.+++....
T Consensus       256 i~sgi~~~~~~~v~~~~~~~-f~~~~~~~~  284 (288)
T TIGR00406       256 ILSGILETQAQSVCDAYEQG-FTVVEIRQR  284 (288)
T ss_pred             EEEeCcHhHHHHHHHHHHcc-CceeeEecc
Confidence            9987665   6677777766 888766543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.25  E-value=1.1e-10  Score=98.03  Aligned_cols=121  Identities=12%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|.++             ..+..                  .....++++|+++.+++.+...      
T Consensus        13 ~~~~iLDiGcG~G~~~-------------~~l~~------------------~~~~~~~giD~s~~~i~~a~~~------   55 (194)
T TIGR02081        13 PGSRVLDLGCGDGELL-------------ALLRD------------------EKQVRGYGIEIDQDGVLACVAR------   55 (194)
T ss_pred             CCCEEEEeCCCCCHHH-------------HHHHh------------------ccCCcEEEEeCCHHHHHHHHHc------
Confidence            5679999999999887             33322                  1234578999999998887531      


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-C-CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                                  +++++.+|+.. + +.++++||+|+++.++++++++..+++++.+.++++..
T Consensus        56 ----------------------------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii  107 (194)
T TIGR02081        56 ----------------------------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIV  107 (194)
T ss_pred             ----------------------------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEE
Confidence                                        24567777764 3 35567899999999999999999999999988775311


Q ss_pred             EE-------------------E--------------EecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         201 FL-------------------C--------------LEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       201 l~-------------------i--------------~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      -+                   .              .-++.+++.++++++||++++...+
T Consensus       108 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       108 SFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             EcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence            10                   0              0122388999999999999988877

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PTZ00146 fibrillarin; Provisional

Probab=99.23  E-value=2.6e-10  Score=101.53  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=90.3

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +..+++.+|||+|||+|.++             ..++..++                ....++++|+++.+.+.....+.
T Consensus       128 l~IkpG~~VLDLGaG~G~~t-------------~~lAdiVG----------------~~G~VyAVD~s~r~~~dLl~~ak  178 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTV-------------SHVSDLVG----------------PEGVVYAVEFSHRSGRDLTNMAK  178 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHH-------------HHHHHHhC----------------CCCEEEEEECcHHHHHHHHHHhh
Confidence            44688899999999999999             55555332                24579999999887765555443


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                               +.    .++.++..|+...   +...+++|+|++...  ...+...++.++.+.|
T Consensus       179 -------------------------~r----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~L  227 (293)
T PTZ00146        179 -------------------------KR----PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFL  227 (293)
T ss_pred             -------------------------hc----CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhc
Confidence                                     11    2567778887542   112357999998763  2223345667899999


Q ss_pred             cCCcEEEEEecC--------HHHH----HHHHHHCCCceEEEEEec
Q psy1420         196 KPGGRFLCLEFS--------HEEF----KSMIESAGFQYVTYENLT  229 (241)
Q Consensus       196 kpgG~l~i~~~~--------~~~~----~~~l~~~Gf~~~~~~~~~  229 (241)
                      ||||.|++....        .++.    .++|+++||+.++..++.
T Consensus       228 KpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~  273 (293)
T PTZ00146        228 KNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLE  273 (293)
T ss_pred             cCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecC
Confidence            999999983211        1222    488999999988877763

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.23  E-value=1.8e-10  Score=98.51  Aligned_cols=138  Identities=9%  Similarity=0.065  Sum_probs=92.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||.|..+             .-++.                   .+..++++|+|+.+++.+.+... ..
T Consensus        33 ~~~~rvLd~GCG~G~da-------------~~LA~-------------------~G~~V~gvD~S~~Ai~~~~~~~~-~~   79 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDL-------------AWLAE-------------------QGHRVLGVELSEIAVEQFFAENG-LT   79 (213)
T ss_pred             CCCCeEEEeCCCchhHH-------------HHHHh-------------------CCCeEEEEeCCHHHHHHHHHHcC-CC
Confidence            46679999999999998             33333                   47789999999999997644322 00


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhcccc--HHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~Lkpg  198 (241)
                                  .........+.  ....++++.++|+.+++.. .++||.|+...++++++.  ....++.+.++||||
T Consensus        80 ------------~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840        80 ------------PTVTQQGEFTR--YRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG  145 (213)
T ss_pred             ------------cceecccccee--eecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence                        00000000000  0113688999999887642 357999999888887754  357899999999999


Q ss_pred             cEEEEEecCH--------------HHHHHHHHHCCCceEEEEE
Q psy1420         199 GRFLCLEFSH--------------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       199 G~l~i~~~~~--------------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      |++++..+..              +++.+.+. .+|.+...+.
T Consensus       146 G~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~  187 (213)
T TIGR03840       146 ARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES  187 (213)
T ss_pred             CeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence            9866654332              77777775 3466555544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.23  E-value=2.8e-10  Score=101.35  Aligned_cols=138  Identities=18%  Similarity=0.243  Sum_probs=99.8

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..++.    .             ....+++++|+|+.+++.+++++.  
T Consensus       119 ~~~~~~vLDlG~GsG~i~-------------~~la~----~-------------~~~~~v~avDis~~al~~A~~n~~--  166 (284)
T TIGR03533       119 PEPVKRILDLCTGSGCIA-------------IACAY----A-------------FPEAEVDAVDISPDALAVAEINIE--  166 (284)
T ss_pred             cCCCCEEEEEeCchhHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHHHHHHHHHH--
Confidence            344568999999999988             33332    0             024689999999999999999988  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh------h-------hcc------
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG------I-------RNV------  181 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~------l-------~~~------  181 (241)
                                             ..++. .+++++++|+.+. .+.++||+|+++--      +       ++-      
T Consensus       167 -----------------------~~~~~-~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~  221 (284)
T TIGR03533       167 -----------------------RHGLE-DRVTLIQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALA  221 (284)
T ss_pred             -----------------------HcCCC-CcEEEEECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhc
Confidence                                   55554 4688999997542 33457999998611      1       110      


Q ss_pred             ------ccHHHHHHHHHHhccCCcEEEEEe-cCHHHHHHHHHHCCCceEEEEEecCceeEE
Q psy1420         182 ------TRIDKALSEAYRVLKPGGRFLCLE-FSHEEFKSMIESAGFQYVTYENLTFGVVAI  235 (241)
Q Consensus       182 ------~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~  235 (241)
                            .....+++.+.++|+|||++++-. ...+.+.+++.++||.+.......-|+...
T Consensus       222 gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  282 (284)
T TIGR03533       222 SGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTWLEFENGGDGVFLL  282 (284)
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCceeeecCCCcEEEEE
Confidence                  123577899999999999998733 344788999999999998887766665543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.22  E-value=2.4e-11  Score=103.80  Aligned_cols=161  Identities=15%  Similarity=0.206  Sum_probs=116.9

Q ss_pred             hHHHHHhhhhhccccc-hhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTM-NDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      .+...||..+..|+.+ .+....... ....+++...+..+=.++||+|||||...             ..+-+      
T Consensus        86 YVe~LFD~~Ae~Fd~~LVdkL~Y~vP-~~l~emI~~~~~g~F~~~lDLGCGTGL~G-------------~~lR~------  145 (287)
T COG4976          86 YVETLFDQYAERFDHILVDKLGYSVP-ELLAEMIGKADLGPFRRMLDLGCGTGLTG-------------EALRD------  145 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHhccCCccceeeecccCcCccc-------------HhHHH------
Confidence            4678899999888874 122222211 23455555666656678999999999988             44433      


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++|+|+|.+|++.+..+--                                --.+.++++...
T Consensus       146 -------------~a~~ltGvDiS~nMl~kA~eKg~--------------------------------YD~L~~Aea~~F  180 (287)
T COG4976         146 -------------MADRLTGVDISENMLAKAHEKGL--------------------------------YDTLYVAEAVLF  180 (287)
T ss_pred             -------------HHhhccCCchhHHHHHHHHhccc--------------------------------hHHHHHHHHHHH
Confidence                         24579999999999999876421                                012233333311


Q ss_pred             -C-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH------------------HHHHHHHHHCCCce
Q psy1420         163 -P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH------------------EEFKSMIESAGFQY  222 (241)
Q Consensus       163 -~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------~~~~~~l~~~Gf~~  222 (241)
                       + ...+++|+|++.-++.++.+.+.++-.+...|+|||.|.++.-..                  ..+...++..||.+
T Consensus       181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~  260 (287)
T COG4976         181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV  260 (287)
T ss_pred             hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence             1 346789999999999999999999999999999999999865222                  78899999999999


Q ss_pred             EEEEEec
Q psy1420         223 VTYENLT  229 (241)
Q Consensus       223 ~~~~~~~  229 (241)
                      +.+++.+
T Consensus       261 i~~~~tt  267 (287)
T COG4976         261 IAIEDTT  267 (287)
T ss_pred             EEeeccc
Confidence            9998875

>KOG1271|consensus

Probab=99.22  E-value=2e-10  Score=95.18  Aligned_cols=127  Identities=20%  Similarity=0.335  Sum_probs=99.6

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      +|||+|||.|...             .+++.                 +.-...++|+|+|+.+++.|...++       
T Consensus        70 ~VlDLGtGNG~~L-------------~~L~~-----------------egf~~~L~GvDYs~~AV~LA~niAe-------  112 (227)
T KOG1271|consen   70 RVLDLGTGNGHLL-------------FQLAK-----------------EGFQSKLTGVDYSEKAVELAQNIAE-------  112 (227)
T ss_pred             ceeeccCCchHHH-------------HHHHH-----------------hcCCCCccccccCHHHHHHHHHHHH-------
Confidence            9999999999877             55544                 1123459999999999999998888       


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--------ccHHHHHHHHHHhccC
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--------TRIDKALSEAYRVLKP  197 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--------~~~~~~l~~~~~~Lkp  197 (241)
                                        ..+++ ..++|.+.|+.......++||+|+.-..+..+        ..+...+..+.++|+|
T Consensus       113 ------------------~~~~~-n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~  173 (227)
T KOG1271|consen  113 ------------------RDGFS-NEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP  173 (227)
T ss_pred             ------------------hcCCC-cceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence                              66666 45999999999887778899999976655432        1335678889999999


Q ss_pred             CcEEEEEe--cCHHHHHHHHHHCCCceEEEEEe
Q psy1420         198 GGRFLCLE--FSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       198 gG~l~i~~--~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ||+++|..  +..+++.+.++..||.+....+.
T Consensus       174 ~gifvItSCN~T~dELv~~f~~~~f~~~~tvp~  206 (227)
T KOG1271|consen  174 GGIFVITSCNFTKDELVEEFENFNFEYLSTVPT  206 (227)
T ss_pred             CcEEEEEecCccHHHHHHHHhcCCeEEEEeecc
Confidence            99999965  55599999999999987654443

>TIGR03438 probable methyltransferase

Probab=99.21  E-value=8.7e-10  Score=98.90  Aligned_cols=140  Identities=19%  Similarity=0.202  Sum_probs=87.6

Q ss_pred             HHHHHhhhhh--ccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           5 MYEVFENVAK--SYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         5 ~~~~f~~~~~--~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      ..+.|+.+..  .|-....-  ..+.+...+.+...+.  ++.+|||+|||+|..+             ..++.    .+
T Consensus        27 G~~lf~~i~~~peYy~tr~E--~~il~~~~~~ia~~~~--~~~~iLELGcGtG~~t-------------~~Ll~----~l   85 (301)
T TIGR03438        27 GSELFEQICELPEYYPTRTE--AAILERHADEIAAATG--AGCELVELGSGSSRKT-------------RLLLD----AL   85 (301)
T ss_pred             HHHHHHHHHCCCccccHHHH--HHHHHHHHHHHHHhhC--CCCeEEecCCCcchhH-------------HHHHH----hh
Confidence            4566776654  23221111  1222333444544443  5578999999999988             44444    11


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-  161 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-  161 (241)
                      .            ....++++|+|+.|++.+.+++.                         .. .+.-++.++++|+.. 
T Consensus        86 ~------------~~~~~~~iDiS~~mL~~a~~~l~-------------------------~~-~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        86 R------------QPARYVPIDISADALKESAAALA-------------------------AD-YPQLEVHGICADFTQP  127 (301)
T ss_pred             c------------cCCeEEEEECCHHHHHHHHHHHH-------------------------hh-CCCceEEEEEEcccch
Confidence            0            14579999999999999988765                         21 111236678888775 


Q ss_pred             CCCCCC----ceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEE
Q psy1420         162 LPIESD----SYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLC  203 (241)
Q Consensus       162 ~~~~~~----~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i  203 (241)
                      .+....    ...++++...+++++.  ...+|++++++|+|||.+++
T Consensus       128 ~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       128 LALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             hhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            333322    2334555566777654  45799999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.21  E-value=3.3e-10  Score=95.13  Aligned_cols=136  Identities=19%  Similarity=0.255  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      +..+..+...+...++.+|||+|||+|..+             ..++.    .             ....+++++|+++.
T Consensus        26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~-------------~~la~----~-------------~~~~~V~~vD~s~~   75 (196)
T PRK07402         26 REVRLLLISQLRLEPDSVLWDIGAGTGTIP-------------VEAGL----L-------------CPKGRVIAIERDEE   75 (196)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHH-------------HHHHH----H-------------CCCCEEEEEeCCHH
Confidence            344556677777778889999999999987             33322    0             02468999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKA  187 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~  187 (241)
                      +++.+++++.                         +.++.  +++++.+|+... +.....+|.++...    ..+...+
T Consensus        76 ~~~~a~~n~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~~d~v~~~~----~~~~~~~  124 (196)
T PRK07402         76 VVNLIRRNCD-------------------------RFGVK--NVEVIEGSAPECLAQLAPAPDRVCIEG----GRPIKEI  124 (196)
T ss_pred             HHHHHHHHHH-------------------------HhCCC--CeEEEECchHHHHhhCCCCCCEEEEEC----CcCHHHH
Confidence            9999999887                         44443  578888887542 21122356665432    2356789


Q ss_pred             HHHHHHhccCCcEEEEEecCHHH---HHHHHHHC---CCceEEE
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSHEE---FKSMIESA---GFQYVTY  225 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~~~---~~~~l~~~---Gf~~~~~  225 (241)
                      ++++.++|+|||++++.....+.   ..+.+++.   ++++++.
T Consensus       125 l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (196)
T PRK07402        125 LQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA  168 (196)
T ss_pred             HHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence            99999999999999998776633   44555443   4555544

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.21  E-value=1e-10  Score=97.87  Aligned_cols=122  Identities=18%  Similarity=0.240  Sum_probs=95.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .|+.+|||+|||.|.+.             ..+.                  +.......|+|+++..+..+.++     
T Consensus        12 ~pgsrVLDLGCGdG~LL-------------~~L~------------------~~k~v~g~GvEid~~~v~~cv~r-----   55 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELL-------------AYLK------------------DEKQVDGYGVEIDPDNVAACVAR-----   55 (193)
T ss_pred             CCCCEEEecCCCchHHH-------------HHHH------------------HhcCCeEEEEecCHHHHHHHHHc-----
Confidence            46889999999999876             2222                  23567899999999988877643     


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                                   .+.++++|+++-  .+++++||.|+++.++.++.+|+..|+++.|+-   .
T Consensus        56 -----------------------------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVg---r  103 (193)
T PF07021_consen   56 -----------------------------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVG---R  103 (193)
T ss_pred             -----------------------------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhc---C
Confidence                                         356889998763  477899999999999999999999999998873   3


Q ss_pred             EEEEEe--cCH----------------------------------HHHHHHHHHCCCceEEEEEecCc
Q psy1420         200 RFLCLE--FSH----------------------------------EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       200 ~l~i~~--~~~----------------------------------~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      ..+++-  |.+                                  .+++++.++.|+++++...+..+
T Consensus       104 ~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~  171 (193)
T PF07021_consen  104 RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG  171 (193)
T ss_pred             eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence            334322  222                                  99999999999999988877543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.19  E-value=9.5e-10  Score=96.50  Aligned_cols=148  Identities=20%  Similarity=0.213  Sum_probs=99.5

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.......++.+|||+|||+|..+             ..++.    ..             +...++++|+++.+++.
T Consensus        98 ~~~~~~~~~~~~~~vLDiG~GsG~~~-------------~~la~----~~-------------~~~~v~~iDis~~~l~~  147 (275)
T PRK09328         98 EWALEALLLKEPLRVLDLGTGSGAIA-------------LALAK----ER-------------PDAEVTAVDISPEALAV  147 (275)
T ss_pred             HHHHHhccccCCCEEEEEcCcHHHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence            34444444567789999999999987             43333    11             24679999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh-------------
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-------------  179 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~-------------  179 (241)
                      +++++.                         ... . .++.+..+|+... ...++||+|+++-...             
T Consensus       148 a~~n~~-------------------------~~~-~-~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~  199 (275)
T PRK09328        148 ARRNAK-------------------------HGL-G-ARVEFLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVR  199 (275)
T ss_pred             HHHHHH-------------------------hCC-C-CcEEEEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhh
Confidence            998865                         111 1 3678888887543 2346899999852111             


Q ss_pred             -------------ccccHHHHHHHHHHhccCCcEEEEEec--CHHHHHHHHHHCCCceEEEEEecCceeEEEee
Q psy1420         180 -------------NVTRIDKALSEAYRVLKPGGRFLCLEF--SHEEFKSMIESAGFQYVTYENLTFGVVAIHSG  238 (241)
Q Consensus       180 -------------~~~~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~  238 (241)
                                   ......++++++.++|+|||++++..-  ..+.+.+++++.||..++...-..|.-.+..+
T Consensus       200 ~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~  273 (275)
T PRK09328        200 DHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLAGRDRVVLG  273 (275)
T ss_pred             hcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCCCCceEEEE
Confidence                         012246788889999999999987431  12779999999999866654333444444444

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=5.8e-10  Score=100.41  Aligned_cols=133  Identities=20%  Similarity=0.249  Sum_probs=96.0

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      .+|||+|||+|..+             ..++.    .             .+..+++++|+|+.+++.+++++.      
T Consensus       135 ~~VLDlG~GsG~ia-------------i~la~----~-------------~p~~~V~avDis~~al~~A~~n~~------  178 (307)
T PRK11805        135 TRILDLCTGSGCIA-------------IACAY----A-------------FPDAEVDAVDISPDALAVAEINIE------  178 (307)
T ss_pred             CEEEEEechhhHHH-------------HHHHH----H-------------CCCCEEEEEeCCHHHHHHHHHHHH------
Confidence            68999999999988             33332    0             135689999999999999999988      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hh-------hcc----------
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GI-------RNV----------  181 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l-------~~~----------  181 (241)
                                         ..++. .+++++++|+.+. .+.++||+|+++-      .+       ++-          
T Consensus       179 -------------------~~~l~-~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d  237 (307)
T PRK11805        179 -------------------RHGLE-DRVTLIESDLFAA-LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD  237 (307)
T ss_pred             -------------------HhCCC-CcEEEEECchhhh-CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc
Confidence                               55554 4688999997542 2345799999861      00       111          


Q ss_pred             --ccHHHHHHHHHHhccCCcEEEEEe-cCHHHHHHHHHHCCCceEEEEEecCceeE
Q psy1420         182 --TRIDKALSEAYRVLKPGGRFLCLE-FSHEEFKSMIESAGFQYVTYENLTFGVVA  234 (241)
Q Consensus       182 --~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  234 (241)
                        .....+++.+.++|+|||++++-. ...+.+.+++.+.||.+.......+++..
T Consensus       238 Gl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (307)
T PRK11805        238 GLDLVRRILAEAPDYLTEDGVLVVEVGNSRVHLEEAYPDVPFTWLEFENGGDGVFL  293 (307)
T ss_pred             hHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHhhCCCEEEEecCCCceEEE
Confidence              123578899999999999998732 33467888999999988777765555443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.18  E-value=4.5e-10  Score=102.59  Aligned_cols=126  Identities=14%  Similarity=0.162  Sum_probs=89.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+......+|||+|||+|..+             ..+..       .          .+..+++++|+++.+++
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls-------------~~la~-------~----------~p~~~v~~vDis~~Al~  234 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLS-------------AVLAR-------H----------SPKIRLTLSDVSAAALE  234 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHH-------------HHHHH-------h----------CCCCEEEEEECCHHHHH
Confidence            355666666555668999999999988             33332       0          02457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc-----ccHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-----TRIDK  186 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~-----~~~~~  186 (241)
                      .++.++.                         ..++.   .++...|....  ..++||+|+++..+|..     .....
T Consensus       235 ~A~~nl~-------------------------~n~l~---~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~  284 (342)
T PRK09489        235 SSRATLA-------------------------ANGLE---GEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQT  284 (342)
T ss_pred             HHHHHHH-------------------------HcCCC---CEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHH
Confidence            9999887                         43433   35566665442  25689999999887752     34578


Q ss_pred             HHHHHHHhccCCcEEEEEecCHHHHHHHHHH
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFSHEEFKSMIES  217 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~  217 (241)
                      +++.+.++|||||.++++....-....++++
T Consensus       285 ~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~  315 (342)
T PRK09489        285 LIRGAVRHLNSGGELRIVANAFLPYPDLLDE  315 (342)
T ss_pred             HHHHHHHhcCcCCEEEEEEeCCCChHHHHHH
Confidence            9999999999999998876554333344443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.16  E-value=1.1e-09  Score=97.45  Aligned_cols=138  Identities=20%  Similarity=0.220  Sum_probs=95.0

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      .+|||+|||+|..+             ..++.    .   .          ...+++++|+|+.+++.+++++.      
T Consensus       116 ~~vLDlG~GsG~i~-------------l~la~----~---~----------~~~~v~avDis~~al~~a~~n~~------  159 (284)
T TIGR00536       116 LHILDLGTGSGCIA-------------LALAY----E---F----------PNAEVIAVDISPDALAVAEENAE------  159 (284)
T ss_pred             CEEEEEeccHhHHH-------------HHHHH----H---C----------CCCEEEEEECCHHHHHHHHHHHH------
Confidence            68999999999987             33333    1   0          24579999999999999999987      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee-------------hhhcc----------
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-------------GIRNV----------  181 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~-------------~l~~~----------  181 (241)
                                         ..++. .+++++++|+.+. .+..+||+|+++-             ...+-          
T Consensus       160 -------------------~~~~~-~~v~~~~~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d  218 (284)
T TIGR00536       160 -------------------KNQLE-HRVEFIQSNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD  218 (284)
T ss_pred             -------------------HcCCC-CcEEEEECchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc
Confidence                               44443 3588888887653 3334799999851             11111          


Q ss_pred             --ccHHHHHHHHHHhccCCcEEEEEecC--HHHHHHHHH-HCCCceEEEEEecCceeEEEeee
Q psy1420         182 --TRIDKALSEAYRVLKPGGRFLCLEFS--HEEFKSMIE-SAGFQYVTYENLTFGVVAIHSGF  239 (241)
Q Consensus       182 --~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~l~-~~Gf~~~~~~~~~~~~~~~~~~~  239 (241)
                        .....+++.+.++|+|||++++-.-.  ...+.+++. +.||..+++..=..|.-.+..++
T Consensus       219 gl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~  281 (284)
T TIGR00536       219 GLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF  281 (284)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence              13567889999999999998773322  267788888 46886555443345555555554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.16  E-value=3.9e-10  Score=95.81  Aligned_cols=110  Identities=7%  Similarity=0.035  Sum_probs=81.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+...+...++.+|||+|||+|..+             ..+..                   ....++++|+++.++
T Consensus        66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t-------------~~la~-------------------~~~~v~~vd~~~~~~  113 (212)
T PRK00312         66 MVARMTELLELKPGDRVLEIGTGSGYQA-------------AVLAH-------------------LVRRVFSVERIKTLQ  113 (212)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCccHHH-------------HHHHH-------------------HhCEEEEEeCCHHHH
Confidence            3456667777788899999999999988             32222                   123699999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         +.++.  ++++..+|........++||+|++...++++      ...
T Consensus       114 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~  160 (212)
T PRK00312        114 WEAKRRLK-------------------------QLGLH--NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI------PRA  160 (212)
T ss_pred             HHHHHHHH-------------------------HCCCC--ceEEEECCcccCCCcCCCcCEEEEccCchhh------hHH
Confidence            99999887                         44544  4788888875532234689999987765544      345


Q ss_pred             HHHhccCCcEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLE  205 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~  205 (241)
                      +.+.|+|||++++..
T Consensus       161 l~~~L~~gG~lv~~~  175 (212)
T PRK00312        161 LLEQLKEGGILVAPV  175 (212)
T ss_pred             HHHhcCCCcEEEEEE
Confidence            788999999998854

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.15  E-value=1.5e-10  Score=98.12  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...++..+...+..+|.|+|||+|+.+.                     ++...+         +...++|+|-|+.|++
T Consensus        19 a~dLla~Vp~~~~~~v~DLGCGpGnsTe---------------------lL~~Rw---------P~A~i~GiDsS~~Mla   68 (257)
T COG4106          19 ARDLLARVPLERPRRVVDLGCGPGNSTE---------------------LLARRW---------PDAVITGIDSSPAMLA   68 (257)
T ss_pred             HHHHHhhCCccccceeeecCCCCCHHHH---------------------HHHHhC---------CCCeEeeccCCHHHHH
Confidence            3456677777778899999999999982                     222232         4789999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .|..+..                                +++|..+|+..-. ++.+.|+++++.+++++++=...|.++
T Consensus        69 ~Aa~rlp--------------------------------~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL  115 (257)
T COG4106          69 KAAQRLP--------------------------------DATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRL  115 (257)
T ss_pred             HHHHhCC--------------------------------CCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHH
Confidence            9976543                                6788899988763 345789999999999999999999999


Q ss_pred             HHhccCCcEEEEEe
Q psy1420         192 YRVLKPGGRFLCLE  205 (241)
Q Consensus       192 ~~~LkpgG~l~i~~  205 (241)
                      ...|.|||.|.+.-
T Consensus       116 ~~~L~Pgg~LAVQm  129 (257)
T COG4106         116 VSQLAPGGVLAVQM  129 (257)
T ss_pred             HHhhCCCceEEEEC
Confidence            99999999999853

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.14  E-value=6.8e-10  Score=102.50  Aligned_cols=119  Identities=22%  Similarity=0.298  Sum_probs=90.2

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+....+..+||+|||+|..+             ..++.       ..          +...++|+|+++.+++.
T Consensus       112 ~~~~~~~~~~~~p~vLEIGcGsG~~l-------------l~lA~-------~~----------P~~~~iGIEI~~~~i~~  161 (390)
T PRK14121        112 DNFLDFISKNQEKILIEIGFGSGRHL-------------LYQAK-------NN----------PNKLFIGIEIHTPSIEQ  161 (390)
T ss_pred             HHHHHHhcCCCCCeEEEEcCcccHHH-------------HHHHH-------hC----------CCCCEEEEECCHHHHHH
Confidence            45566666666779999999999988             33333       11          35689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccH------
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRI------  184 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~------  184 (241)
                      +.+++.                         ..++.  ++.++++|+..+  .++++++|.|++++...|....      
T Consensus       162 a~~ka~-------------------------~~gL~--NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~  214 (390)
T PRK14121        162 VLKQIE-------------------------LLNLK--NLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVIS  214 (390)
T ss_pred             HHHHHH-------------------------HcCCC--cEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccH
Confidence            998887                         55655  689999998654  4567899999986544332211      


Q ss_pred             HHHHHHHHHhccCCcEEEEEecCH
Q psy1420         185 DKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       185 ~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ..+++++.|+|+|||.+.+.+-..
T Consensus       215 ~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        215 EDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             HHHHHHHHHHcCCCcEEEEEEECH
Confidence            689999999999999999876555

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.13  E-value=1.1e-09  Score=94.15  Aligned_cols=141  Identities=11%  Similarity=0.058  Sum_probs=93.1

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||.|..+             ..++.                   .+..|+++|+|+.+++.+.+... 
T Consensus        34 ~~~~~~rvL~~gCG~G~da-------------~~LA~-------------------~G~~V~avD~s~~Ai~~~~~~~~-   80 (218)
T PRK13255         34 ALPAGSRVLVPLCGKSLDM-------------LWLAE-------------------QGHEVLGVELSELAVEQFFAENG-   80 (218)
T ss_pred             CCCCCCeEEEeCCCChHhH-------------HHHHh-------------------CCCeEEEEccCHHHHHHHHHHcC-
Confidence            3356679999999999988             33333                   47789999999999998643221 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhcccc--HHHHHHHHHHhcc
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLK  196 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~Lk  196 (241)
                      +.            .......  ........++++.++|+.+++.. ...||.|+...++++++.  ..+.+..+.++|+
T Consensus        81 l~------------~~~~~~~--~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~  146 (218)
T PRK13255         81 LT------------PQTRQSG--EFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLP  146 (218)
T ss_pred             CC------------ccccccc--cccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC
Confidence            00            0000000  00011124688999999887533 257999999888887753  4689999999999


Q ss_pred             CCcEEEEEe--cCH------------HHHHHHHHHCCCceEEEEEe
Q psy1420         197 PGGRFLCLE--FSH------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       197 pgG~l~i~~--~~~------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |||++++..  +..            +++.+.+.. +|.+...+..
T Consensus       147 pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~~  191 (218)
T PRK13255        147 AGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLERQ  191 (218)
T ss_pred             CCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEeeec
Confidence            998755432  221            778887752 3666655543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.13  E-value=1.2e-09  Score=93.15  Aligned_cols=128  Identities=18%  Similarity=0.227  Sum_probs=90.0

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      +..+.||+|+|-|..+             ..++-                  ....++..+|+.+..++.|++...    
T Consensus        55 ~~~~alDcGAGIGRVT-------------k~lLl------------------~~f~~VDlVEp~~~Fl~~a~~~l~----   99 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVT-------------KGLLL------------------PVFDEVDLVEPVEKFLEQAKEYLG----   99 (218)
T ss_dssp             --SEEEEET-TTTHHH-------------HHTCC------------------CC-SEEEEEES-HHHHHHHHHHTC----
T ss_pred             CcceEEecccccchhH-------------HHHHH------------------HhcCEeEEeccCHHHHHHHHHHhc----
Confidence            3568999999999999             55533                  145689999999999999987665    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGR  200 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~  200 (241)
                                           +.. . .-.++.+..+++...++.+||+|++.+++.|++|.  ..+|.++...|+|+|.
T Consensus       100 ---------------------~~~-~-~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~  156 (218)
T PF05891_consen  100 ---------------------KDN-P-RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGV  156 (218)
T ss_dssp             ---------------------CGG-C-CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEE
T ss_pred             ---------------------ccC-C-CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcE
Confidence                                 100 0 22466777777664445799999999999999865  6999999999999999


Q ss_pred             EEEEecCH------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         201 FLCLEFSH------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       201 l~i~~~~~------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++-+-..                  +.+++++++||+++++.+.-
T Consensus       157 IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  157 IVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             EEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred             EEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence            99854111                  89999999999999987755

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.11  E-value=1.6e-09  Score=99.99  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=90.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+....+.+|||+|||+|..+             ..+..       ..          +..+++++|.|+.+++
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~-------------i~la~-------~~----------P~~~V~~vD~S~~Av~  266 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIG-------------LTLLD-------KN----------PQAKVVFVDESPMAVA  266 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHH-------------HHHHH-------hC----------CCCEEEEEECCHHHHH
Confidence            566777777666679999999999988             33322       11          3568999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCC-CCCeeEEecccCCCCCCCCceeEEeeeehhhccc-----cHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP-NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-----RID  185 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~-----~~~  185 (241)
                      .+++++.                         ..+.. ..++++...|.... .+..+||+|+|+-.+|...     ...
T Consensus       267 ~A~~N~~-------------------------~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~  320 (378)
T PRK15001        267 SSRLNVE-------------------------TNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAW  320 (378)
T ss_pred             HHHHHHH-------------------------HcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHH
Confidence            9999886                         22211 02577777776543 2345899999986665431     235


Q ss_pred             HHHHHHHHhccCCcEEEEEecCHHHHHHHHHH
Q psy1420         186 KALSEAYRVLKPGGRFLCLEFSHEEFKSMIES  217 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~  217 (241)
                      +++..++++|+|||.++++...+-.....+++
T Consensus       321 ~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~  352 (378)
T PRK15001        321 EMFHHARRCLKINGELYIVANRHLDYFHKLKK  352 (378)
T ss_pred             HHHHHHHHhcccCCEEEEEEecCcCHHHHHHH
Confidence            78999999999999999875444333344433

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.11  E-value=1.2e-09  Score=95.44  Aligned_cols=136  Identities=17%  Similarity=0.271  Sum_probs=103.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...++..++..||.+|+|.|+|+|.++             ..++..+|                +.++++..|..+...+
T Consensus        29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt-------------~~l~r~v~----------------p~G~v~t~E~~~~~~~   79 (247)
T PF08704_consen   29 ISYILMRLDIRPGSRVLEAGTGSGSLT-------------HALARAVG----------------PTGHVYTYEFREDRAE   79 (247)
T ss_dssp             HHHHHHHTT--TT-EEEEE--TTSHHH-------------HHHHHHHT----------------TTSEEEEEESSHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEecCCcHHHH-------------HHHHHHhC----------------CCeEEEccccCHHHHH
Confidence            356777888999999999999999999             55554333                4678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      .|++++.                         ..++. +++++...|+....+.   +..+|+|+.     .+++|..++
T Consensus        80 ~A~~n~~-------------------------~~gl~-~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i  128 (247)
T PF08704_consen   80 KARKNFE-------------------------RHGLD-DNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAI  128 (247)
T ss_dssp             HHHHHHH-------------------------HTTCC-TTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGH
T ss_pred             HHHHHHH-------------------------HcCCC-CCceeEecceecccccccccCcccEEEE-----eCCCHHHHH
Confidence            9999998                         66765 6899999998754332   357999984     678999999


Q ss_pred             HHHHHhc-cCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420         189 SEAYRVL-KPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       189 ~~~~~~L-kpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ..+.+.| ||||++++.....   ...-+.|++.||..+++..
T Consensus       129 ~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  129 PHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             HHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence            9999999 8999999888777   4556677889997765543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.11  E-value=2.9e-09  Score=99.09  Aligned_cols=140  Identities=18%  Similarity=0.206  Sum_probs=98.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..+..       ..          ...+++++|+|+.+++.+++++.    
T Consensus       251 ~~~rVLDLGcGSG~Ia-------------iaLA~-------~~----------p~a~VtAVDiS~~ALe~AreNa~----  296 (423)
T PRK14966        251 ENGRVWDLGTGSGAVA-------------VTVAL-------ER----------PDAFVRASDISPPALETARKNAA----  296 (423)
T ss_pred             CCCEEEEEeChhhHHH-------------HHHHH-------hC----------CCCEEEEEECCHHHHHHHHHHHH----
Confidence            4568999999999987             33322       01          35679999999999999999987    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhh-----c----------------
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIR-----N----------------  180 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~-----~----------------  180 (241)
                                           ..+.   +++++++|+.+...+ .++||+|+++--..     .                
T Consensus       297 ---------------------~~g~---rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~g  352 (423)
T PRK14966        297 ---------------------DLGA---RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTD  352 (423)
T ss_pred             ---------------------HcCC---cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhC
Confidence                                 3332   478888887654322 35799999853210     0                


Q ss_pred             cc----cHHHHHHHHHHhccCCcEEEEE-ecC-HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         181 VT----RIDKALSEAYRVLKPGGRFLCL-EFS-HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       181 ~~----~~~~~l~~~~~~LkpgG~l~i~-~~~-~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      ..    ....+++.+.+.|+|||.+++. ... .+.+.+++++.||..++...-..|.-.+..+++
T Consensus       353 G~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~  418 (423)
T PRK14966        353 FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY  418 (423)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence            00    1346777888899999997752 222 288999999999987776665666666666654

>KOG1541|consensus

Probab=99.10  E-value=1e-09  Score=93.45  Aligned_cols=147  Identities=15%  Similarity=0.162  Sum_probs=100.9

Q ss_pred             HhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCC--CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCC
Q psy1420           9 FENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTH--DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQW   86 (241)
Q Consensus         9 f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (241)
                      .|..|..|+....+..  +...+.+..++++....  ..-|||||||+|..+             ..+..          
T Consensus        16 nd~eA~kYt~nsri~~--IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg-------------~vL~~----------   70 (270)
T KOG1541|consen   16 NDTEAPKYTQNSRIVL--IQAEMAERALELLALPGPKSGLILDIGCGSGLSG-------------SVLSD----------   70 (270)
T ss_pred             chhhhhhccccceeee--ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcch-------------heecc----------
Confidence            3556677877543322  23445556666665543  667999999999877             22222          


Q ss_pred             CcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCCCC
Q psy1420          87 KPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELPIE  165 (241)
Q Consensus        87 ~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~  165 (241)
                               .....+|+|+|+.|++.|.+..-                                .-+++.+|. +.+|+.
T Consensus        71 ---------~Gh~wiGvDiSpsML~~a~~~e~--------------------------------egdlil~DMG~Glpfr  109 (270)
T KOG1541|consen   71 ---------SGHQWIGVDISPSMLEQAVEREL--------------------------------EGDLILCDMGEGLPFR  109 (270)
T ss_pred             ---------CCceEEeecCCHHHHHHHHHhhh--------------------------------hcCeeeeecCCCCCCC
Confidence                     45789999999999999986322                                013455553 567899


Q ss_pred             CCceeEEeeeehhhccc-----------cHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCc
Q psy1420         166 SDSYSAYTIAFGIRNVT-----------RIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQ  221 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~-----------~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~  221 (241)
                      +++||-+++...+.+.-           .+..++..++.+|++|++.++.-+..     +.+.+....+||.
T Consensus       110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~  181 (270)
T KOG1541|consen  110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG  181 (270)
T ss_pred             CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence            99999999887765431           23568899999999999987743333     5666677788875

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=2.4e-09  Score=95.59  Aligned_cols=129  Identities=20%  Similarity=0.224  Sum_probs=93.2

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.++||+|||+|-++             +..+.     +             ....++|+|++|.+++.++.++.   
T Consensus       161 ~~g~~vlDvGcGSGILa-------------IAa~k-----L-------------GA~~v~g~DiDp~AV~aa~eNa~---  206 (300)
T COG2264         161 KKGKTVLDVGCGSGILA-------------IAAAK-----L-------------GAKKVVGVDIDPQAVEAARENAR---  206 (300)
T ss_pred             cCCCEEEEecCChhHHH-------------HHHHH-----c-------------CCceEEEecCCHHHHHHHHHHHH---
Confidence            37889999999999988             44433     0             24569999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            .++++. .......+....+ ..++||+|+++- +.  .-.......+.+.+||||++
T Consensus       207 ----------------------~N~v~~-~~~~~~~~~~~~~-~~~~~DvIVANI-LA--~vl~~La~~~~~~lkpgg~l  259 (300)
T COG2264         207 ----------------------LNGVEL-LVQAKGFLLLEVP-ENGPFDVIVANI-LA--EVLVELAPDIKRLLKPGGRL  259 (300)
T ss_pred             ----------------------HcCCch-hhhcccccchhhc-ccCcccEEEehh-hH--HHHHHHHHHHHHHcCCCceE
Confidence                                  555551 1222222222222 235899999754 21  22347888999999999999


Q ss_pred             EEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420         202 LCLEFSH---EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      +++-.-.   +.+.+.+.++||.+++.......
T Consensus       260 IlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW  292 (300)
T COG2264         260 ILSGILEDQAESVAEAYEQAGFEVVEVLEREEW  292 (300)
T ss_pred             EEEeehHhHHHHHHHHHHhCCCeEeEEEecCCE
Confidence            9876444   78888899999999888766433

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.09  E-value=2.1e-10  Score=87.68  Aligned_cols=105  Identities=17%  Similarity=0.285  Sum_probs=80.1

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      |.+|||+|||+|..+             ..++.    .              ...+++++|+++..++.++.++.     
T Consensus         1 g~~vlD~~~G~G~~~-------------~~~~~----~--------------~~~~~~gvdi~~~~~~~a~~~~~-----   44 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFL-------------LAALR----R--------------GAARVTGVDIDPEAVELARRNLP-----   44 (117)
T ss_dssp             TEEEEEETSTTCHHH-------------HHHHH----H--------------CTCEEEEEESSHHHHHHHHHHCH-----
T ss_pred             CCEEEEcCcchHHHH-------------HHHHH----H--------------CCCeEEEEEECHHHHHHHHHHHH-----
Confidence            468999999999988             44433    0              13689999999999999999888     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc--------ccHHHHHHHHHH
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV--------TRIDKALSEAYR  193 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~--------~~~~~~l~~~~~  193 (241)
                                          ..+.. ++++++++|+....  .+..+||+|+++--....        .....+++.+.+
T Consensus        45 --------------------~~~~~-~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~  103 (117)
T PF13659_consen   45 --------------------RNGLD-DRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAAR  103 (117)
T ss_dssp             --------------------HCTTT-TTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHH
T ss_pred             --------------------HccCC-ceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence                                55544 57999999988765  667899999997554422        134688999999


Q ss_pred             hccCCcEEEEEe
Q psy1420         194 VLKPGGRFLCLE  205 (241)
Q Consensus       194 ~LkpgG~l~i~~  205 (241)
                      +|||||.++++.
T Consensus       104 ~L~~gG~~~~~~  115 (117)
T PF13659_consen  104 LLKPGGVLVFIT  115 (117)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             HcCCCeEEEEEe
Confidence            999999998764

...

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.09  E-value=1.7e-09  Score=101.64  Aligned_cols=134  Identities=16%  Similarity=0.261  Sum_probs=97.6

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+...+.+.++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.+
T Consensus       243 l~~~~l~~~~g~~VLDl~ag~G~kt-------------~~la~~~~----------------~~g~v~a~D~~~~rl~~~  293 (434)
T PRK14901        243 LVAPLLDPQPGEVILDACAAPGGKT-------------THIAELMG----------------DQGEIWAVDRSASRLKKL  293 (434)
T ss_pred             HHHHHhCCCCcCEEEEeCCCCchhH-------------HHHHHHhC----------------CCceEEEEcCCHHHHHHH
Confidence            3444567788999999999999988             44444111                245899999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEeee------ehhhcccc
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYTIA------FGIRNVTR  183 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~------~~l~~~~~  183 (241)
                      ++++.                         +.++.  ++++++.|+...+    ...++||.|++.      .+++..++
T Consensus       294 ~~n~~-------------------------r~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~  346 (434)
T PRK14901        294 QENAQ-------------------------RLGLK--SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPD  346 (434)
T ss_pred             HHHHH-------------------------HcCCC--eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcc
Confidence            99998                         66665  5888899988765    335689999963      22332222


Q ss_pred             ----------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceE
Q psy1420         184 ----------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYV  223 (241)
Q Consensus       184 ----------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~  223 (241)
                                      ..+.|+++.++|||||+|+.++.+.      +.+...+++. +|.+.
T Consensus       347 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~  409 (434)
T PRK14901        347 ARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLE  409 (434)
T ss_pred             hhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence                            3578999999999999998766443      5566777776 47654

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.08  E-value=1.2e-09  Score=95.34  Aligned_cols=119  Identities=19%  Similarity=0.311  Sum_probs=92.4

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...++||+|+|.|..+             .++.+                   ...+++++|.|+.|.....++-     
T Consensus        94 ~~~~lLDlGAGdG~VT-------------~~l~~-------------------~f~~v~aTE~S~~Mr~rL~~kg-----  136 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVT-------------ERLAP-------------------LFKEVYATEASPPMRWRLSKKG-----  136 (265)
T ss_pred             cCCceEEecCCCcHHH-------------HHHHh-------------------hcceEEeecCCHHHHHHHHhCC-----
Confidence            4568999999999999             77777                   4667999999999988776542     


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                                   .+++..+  +..-.+.+||+|.|.+++..-.+|...|+.+++.|+|+|+++
T Consensus       137 -----------------------------~~vl~~~--~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~li  185 (265)
T PF05219_consen  137 -----------------------------FTVLDID--DWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLI  185 (265)
T ss_pred             -----------------------------CeEEehh--hhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEE
Confidence                                         2222222  122224589999999999999999999999999999999988


Q ss_pred             EEe---------cCH---------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         203 CLE---------FSH---------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       203 i~~---------~~~---------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +.-         .+.                     ..+.+.++.+||+++...+..
T Consensus       186 lAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P  242 (265)
T PF05219_consen  186 LAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP  242 (265)
T ss_pred             EEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence            743         211                     444589999999999998875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.08  E-value=2.8e-10  Score=97.15  Aligned_cols=113  Identities=16%  Similarity=0.230  Sum_probs=80.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .....+++.+..+|+.+|||+|||+|+.+.++             ..    +. +           ....++++|..+..
T Consensus        59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAll-------------a~----lv-g-----------~~g~Vv~vE~~~~l  109 (209)
T PF01135_consen   59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALL-------------AH----LV-G-----------PVGRVVSVERDPEL  109 (209)
T ss_dssp             HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHH-------------HH----HH-S-----------TTEEEEEEESBHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHH-------------HH----hc-C-----------ccceEEEECccHHH
Confidence            44677888889999999999999999999322             22    11 1           34578999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      .+.+++++.                         ..+..  ++.+..+|...--....+||.|++......++      .
T Consensus       110 ~~~A~~~l~-------------------------~~~~~--nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~  156 (209)
T PF01135_consen  110 AERARRNLA-------------------------RLGID--NVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------E  156 (209)
T ss_dssp             HHHHHHHHH-------------------------HHTTH--SEEEEES-GGGTTGGG-SEEEEEESSBBSS--------H
T ss_pred             HHHHHHHHH-------------------------HhccC--ceeEEEcchhhccccCCCcCEEEEeeccchHH------H
Confidence            999999988                         55544  78899999765433356899999987775443      3


Q ss_pred             HHHHhccCCcEEEEE
Q psy1420         190 EAYRVLKPGGRFLCL  204 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~  204 (241)
                      .+.+.|++||+|++-
T Consensus       157 ~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  157 ALLEQLKPGGRLVAP  171 (209)
T ss_dssp             HHHHTEEEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEE
Confidence            367779999999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.06  E-value=2.9e-09  Score=92.75  Aligned_cols=135  Identities=16%  Similarity=0.246  Sum_probs=102.4

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      +.......+|||+|||+|..+             .        +++++.         ...++.++|+.+.+.+.|+++.
T Consensus        39 ~~~~~~~~~IlDlGaG~G~l~-------------L--------~la~r~---------~~a~I~~VEiq~~~a~~A~~nv   88 (248)
T COG4123          39 FAPVPKKGRILDLGAGNGALG-------------L--------LLAQRT---------EKAKIVGVEIQEEAAEMAQRNV   88 (248)
T ss_pred             hcccccCCeEEEecCCcCHHH-------------H--------HHhccC---------CCCcEEEEEeCHHHHHHHHHHH
Confidence            344455779999999999877             1        222331         3489999999999999999998


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhh----------------
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIR----------------  179 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~----------------  179 (241)
                      .                         -+++. +++++++.|+....  ....+||+|+|+--..                
T Consensus        89 ~-------------------------ln~l~-~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar  142 (248)
T COG4123          89 A-------------------------LNPLE-ERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIAR  142 (248)
T ss_pred             H-------------------------hCcch-hceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhh
Confidence            8                         55555 68999999998874  3345799999873221                


Q ss_pred             c--cccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420         180 N--VTRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       180 ~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |  ..+.+..++.+.++|||||.+.++-...  .++.+++.+.+|...++.-+
T Consensus       143 ~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V  195 (248)
T COG4123         143 HEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFV  195 (248)
T ss_pred             hhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEe
Confidence            1  1135789999999999999998865443  77889999999988777655

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=2.6e-09  Score=92.77  Aligned_cols=131  Identities=17%  Similarity=0.235  Sum_probs=105.2

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+...++..|+.+|+|.|.|+|.++             ..++..+|                +..+++..|+.+...+.
T Consensus        84 ~~I~~~~gi~pg~rVlEAGtGSG~lt-------------~~La~~vg----------------~~G~v~tyE~r~d~~k~  134 (256)
T COG2519          84 GYIVARLGISPGSRVLEAGTGSGALT-------------AYLARAVG----------------PEGHVTTYEIREDFAKT  134 (256)
T ss_pred             HHHHHHcCCCCCCEEEEcccCchHHH-------------HHHHHhhC----------------CCceEEEEEecHHHHHH
Confidence            45667778899999999999999998             44443222                46789999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      |++++.                         ..++. +++.+...|+.+...+. .||+|+.     .+++|..++..++
T Consensus       135 A~~Nl~-------------------------~~~l~-d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW~~le~~~  182 (256)
T COG2519         135 ARENLS-------------------------EFGLG-DRVTLKLGDVREGIDEE-DVDAVFL-----DLPDPWNVLEHVS  182 (256)
T ss_pred             HHHHHH-------------------------Hhccc-cceEEEecccccccccc-ccCEEEE-----cCCChHHHHHHHH
Confidence            999998                         66666 45888889988875544 8999984     6799999999999


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCCCceEE
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVT  224 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~  224 (241)
                      +.|||||.+++.....   +...+.+++.||...+
T Consensus       183 ~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie  217 (256)
T COG2519         183 DALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE  217 (256)
T ss_pred             HHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence            9999999999877666   4455666777886543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.04  E-value=3e-09  Score=95.17  Aligned_cols=123  Identities=19%  Similarity=0.224  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|-++             +..+.     +             ...+++++|+++.+++.++.++.   
T Consensus       160 ~~g~~vLDvG~GSGILa-------------iaA~k-----l-------------GA~~v~a~DiDp~Av~~a~~N~~---  205 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILA-------------IAAAK-----L-------------GAKKVVAIDIDPLAVEAARENAE---  205 (295)
T ss_dssp             STTSEEEEES-TTSHHH-------------HHHHH-----T-------------TBSEEEEEESSCHHHHHHHHHHH---
T ss_pred             cCCCEEEEeCCcHHHHH-------------HHHHH-----c-------------CCCeEEEecCCHHHHHHHHHHHH---
Confidence            56779999999999988             33332     1             24579999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            .+++. .++.+.  ....  ....+||+|+++-...   -....+..+.++|+|||++
T Consensus       206 ----------------------~N~~~-~~~~v~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~l  255 (295)
T PF06325_consen  206 ----------------------LNGVE-DRIEVS--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYL  255 (295)
T ss_dssp             ----------------------HTT-T-TCEEES--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEE
T ss_pred             ----------------------HcCCC-eeEEEE--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEE
Confidence                                  66766 345442  2222  2247899999764432   2346777788999999999


Q ss_pred             EEEecCH---HHHHHHHHHCCCceEEEEEec
Q psy1420         202 LCLEFSH---EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++-.-.   +.+.+.+++ ||.+++.....
T Consensus       256 IlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~  285 (295)
T PF06325_consen  256 ILSGILEEQEDEVIEAYKQ-GFELVEEREEG  285 (295)
T ss_dssp             EEEEEEGGGHHHHHHHHHT-TEEEEEEEEET
T ss_pred             EEccccHHHHHHHHHHHHC-CCEEEEEEEEC
Confidence            9875444   778888876 99987777553

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.04  E-value=9.9e-10  Score=93.03  Aligned_cols=75  Identities=24%  Similarity=0.408  Sum_probs=56.7

Q ss_pred             eEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEEE
Q psy1420         153 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       153 ~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .+..+|+..+|++++++|+++++.+|. -++....+.|+.|+|||||.|.+.+...     +.+.+.+++.||.......
T Consensus       107 ~Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~  185 (219)
T PF05148_consen  107 RVTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE  185 (219)
T ss_dssp             TEEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred             CEEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence            467899999999999999999998885 4678899999999999999999988554     8889999999999887654


Q ss_pred             e
Q psy1420         228 L  228 (241)
Q Consensus       228 ~  228 (241)
                      .
T Consensus       186 ~  186 (219)
T PF05148_consen  186 S  186 (219)
T ss_dssp             -
T ss_pred             C
Confidence            4

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.02  E-value=1.5e-09  Score=98.37  Aligned_cols=113  Identities=17%  Similarity=0.293  Sum_probs=82.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .....+++.+..+++.+|||+|||+|..+             ..++.    ...            ....++++|+++.+
T Consensus        67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a-------------~~LA~----~~~------------~~g~VvgVDis~~~  117 (322)
T PRK13943         67 SLMALFMEWVGLDKGMRVLEIGGGTGYNA-------------AVMSR----VVG------------EKGLVVSVEYSRKI  117 (322)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCccHHH-------------HHHHH----hcC------------CCCEEEEEECCHHH
Confidence            34456667777788889999999999988             33332    100            12469999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.+++++.                         +.++.  ++.++++|+...+....+||+|++..++.+++      .
T Consensus       118 l~~Ar~~l~-------------------------~~g~~--nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip------~  164 (322)
T PRK13943        118 CEIAKRNVR-------------------------RLGIE--NVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVP------E  164 (322)
T ss_pred             HHHHHHHHH-------------------------HcCCC--cEEEEeCChhhcccccCCccEEEECCchHHhH------H
Confidence            999998887                         44543  57888888766544446799999987766543      3


Q ss_pred             HHHHhccCCcEEEEE
Q psy1420         190 EAYRVLKPGGRFLCL  204 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~  204 (241)
                      .+.+.|+|||++++.
T Consensus       165 ~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        165 TWFTQLKEGGRVIVP  179 (322)
T ss_pred             HHHHhcCCCCEEEEE
Confidence            467889999998874

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.02  E-value=2.7e-09  Score=77.25  Aligned_cols=101  Identities=27%  Similarity=0.401  Sum_probs=77.8

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      +++|+|||+|..+             ..++.                  .....++++|+++.++..+++...       
T Consensus         1 ~ildig~G~G~~~-------------~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~-------   42 (107)
T cd02440           1 RVLDLGCGTGALA-------------LALAS------------------GPGARVTGVDISPVALELARKAAA-------   42 (107)
T ss_pred             CeEEEcCCccHHH-------------HHHhc------------------CCCCEEEEEeCCHHHHHHHHHHHh-------
Confidence            4899999999887             33322                  135689999999999988875333       


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhc-cccHHHHHHHHHHhccCCcEEEE
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLC  203 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~i  203 (241)
                                        ...  ..++++...|+..... ...++|+|++...+++ .......++.+.+.++|||.+++
T Consensus        43 ------------------~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~  102 (107)
T cd02440          43 ------------------ALL--ADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL  102 (107)
T ss_pred             ------------------ccc--ccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence                              111  1357788888777653 4568999999999888 77889999999999999999987


Q ss_pred             E
Q psy1420         204 L  204 (241)
Q Consensus       204 ~  204 (241)
                      .
T Consensus       103 ~  103 (107)
T cd02440         103 T  103 (107)
T ss_pred             E
Confidence            4

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=2.4e-09  Score=90.85  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=86.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....|++.+.++++.+|||||||+|+.+             .-+..                   ...+++.+|..+...
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~a-------------Avla~-------------------l~~~V~siEr~~~L~  107 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQA-------------AVLAR-------------------LVGRVVSIERIEELA  107 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHH-------------HHHHH-------------------HhCeEEEEEEcHHHH
Confidence            4577889999999999999999999998             22222                   234899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.|++++.                         ..+..  ++.+.++|...==.+..+||.|++......+|.      .
T Consensus       108 ~~A~~~L~-------------------------~lg~~--nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~------~  154 (209)
T COG2518         108 EQARRNLE-------------------------TLGYE--NVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE------A  154 (209)
T ss_pred             HHHHHHHH-------------------------HcCCC--ceEEEECCcccCCCCCCCcCEEEEeeccCCCCH------H
Confidence            99999998                         66765  589999997653223478999998887766553      3


Q ss_pred             HHHhccCCcEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLE  205 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~  205 (241)
                      +.+.|||||++++-.
T Consensus       155 Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         155 LLDQLKPGGRLVIPV  169 (209)
T ss_pred             HHHhcccCCEEEEEE
Confidence            566789999998854

>KOG3010|consensus

Probab=99.02  E-value=1.5e-09  Score=93.49  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      .++|+|||+|..+             +-+.+                   ...+++++|+|+.|++.+.+....      
T Consensus        36 ~a~DvG~G~Gqa~-------------~~iae-------------------~~k~VIatD~s~~mL~~a~k~~~~------   77 (261)
T KOG3010|consen   36 LAWDVGTGNGQAA-------------RGIAE-------------------HYKEVIATDVSEAMLKVAKKHPPV------   77 (261)
T ss_pred             eEEEeccCCCcch-------------HHHHH-------------------hhhhheeecCCHHHHHHhhcCCCc------
Confidence            7999999999766             44444                   456899999999999988765330      


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc-EEEEE
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLCL  204 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~  204 (241)
                                       ...+.   ..+....+...+-..++++|+|+|..++|++ +.+++.++++|+||++| .+++.
T Consensus        78 -----------------~y~~t---~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen   78 -----------------TYCHT---PSTMSSDEMVDLLGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             -----------------ccccC---CccccccccccccCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence                             00011   1222233333333337899999999999877 67889999999998866 77776


Q ss_pred             ecC
Q psy1420         205 EFS  207 (241)
Q Consensus       205 ~~~  207 (241)
                      ...
T Consensus       137 ~Y~  139 (261)
T KOG3010|consen  137 NYN  139 (261)
T ss_pred             Ecc
Confidence            554

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=5.6e-09  Score=98.50  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=93.7

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+.+.++.+|||+|||+|..+             ..++.    .+.            ....++++|+++.+++.++
T Consensus       242 ~~~~l~~~~g~~VLDlgaG~G~kt-------------~~la~----~~~------------~~~~V~avD~s~~~l~~~~  292 (445)
T PRK14904        242 ACLLLNPQPGSTVLDLCAAPGGKS-------------TFMAE----LMQ------------NRGQITAVDRYPQKLEKIR  292 (445)
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH----HhC------------CCcEEEEEECCHHHHHHHH
Confidence            334556678889999999999987             33333    110            2458999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee-----eh-hhccc------
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA-----FG-IRNVT------  182 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~-----~~-l~~~~------  182 (241)
                      +++.                         +.++.  ++++.+.|+...+ +..+||+|++.     .+ +...+      
T Consensus       293 ~~~~-------------------------~~g~~--~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~  344 (445)
T PRK14904        293 SHAS-------------------------ALGIT--IIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKL  344 (445)
T ss_pred             HHHH-------------------------HhCCC--eEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcC
Confidence            9988                         55554  5888899987764 34689999952     11 11111      


Q ss_pred             ----------cHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceE
Q psy1420         183 ----------RIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYV  223 (241)
Q Consensus       183 ----------~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~  223 (241)
                                ...++|.++.+.|||||+++..+.+.      +.+..++++. +|...
T Consensus       345 ~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~  402 (445)
T PRK14904        345 TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAE  402 (445)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence                      12368999999999999999987555      4456777766 46644

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.98  E-value=6.7e-09  Score=97.42  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=93.5

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+...+++.++.+|||+|||+|..+             ..++.    .+             ...+++++|+++.+++.
T Consensus       228 ~~~~~~L~~~~g~~VLDlcag~G~kt-------------~~la~----~~-------------~~~~v~a~D~~~~~l~~  277 (426)
T TIGR00563       228 QWVATWLAPQNEETILDACAAPGGKT-------------THILE----LA-------------PQAQVVALDIHEHRLKR  277 (426)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCccHHH-------------HHHHH----Hc-------------CCCeEEEEeCCHHHHHH
Confidence            44555677888999999999999988             44443    11             13579999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--CCCceeEEeee------ehhhcccc-
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--ESDSYSAYTIA------FGIRNVTR-  183 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~V~~~------~~l~~~~~-  183 (241)
                      +++++.                         +.++. ..+.+..+|....+.  +..+||.|++.      ..++..++ 
T Consensus       278 ~~~n~~-------------------------r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~  331 (426)
T TIGR00563       278 VYENLK-------------------------RLGLT-IKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDI  331 (426)
T ss_pred             HHHHHH-------------------------HcCCC-eEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcch
Confidence            999988                         55544 234445666554432  35679999852      23443333 


Q ss_pred             ---------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC-Cc
Q psy1420         184 ---------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG-FQ  221 (241)
Q Consensus       184 ---------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G-f~  221 (241)
                                     ..++|+++.++|||||+|+.++.+.      ..+...+++.+ |.
T Consensus       332 ~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~  391 (426)
T TIGR00563       332 KWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP  391 (426)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence                           2579999999999999999876555      55566777663 54

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.98  E-value=3.9e-09  Score=88.05  Aligned_cols=122  Identities=16%  Similarity=0.196  Sum_probs=78.3

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .....++.+|||+|||+|..+             ..++.    ...            ....++++|+++.+      ..
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~-------------~~l~~----~~~------------~~~~v~~vDis~~~------~~   71 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWS-------------QVAVE----QVG------------GKGRVIAVDLQPMK------PI   71 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHH-------------HHHHH----HhC------------CCceEEEEeccccc------cC
Confidence            334477889999999999988             33333    100            23479999999854      11


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeehhh-----cc---
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIR-----NV---  181 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~l~-----~~---  181 (241)
                                                      +++.+.+.|+.+.+        .+.++||+|++....+     ..   
T Consensus        72 --------------------------------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~  119 (188)
T TIGR00438        72 --------------------------------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHL  119 (188)
T ss_pred             --------------------------------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHH
Confidence                                            13566777766532        3356799999854311     11   


Q ss_pred             ---ccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHH--CCCceEEEE
Q psy1420         182 ---TRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIES--AGFQYVTYE  226 (241)
Q Consensus       182 ---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~--~Gf~~~~~~  226 (241)
                         .+...+++.+.++|+|||++++..+....+.+++..  .+|..+++.
T Consensus       120 ~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~  169 (188)
T TIGR00438       120 RSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVT  169 (188)
T ss_pred             HHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEe
Confidence               124689999999999999999876665444444443  246544443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.97  E-value=5.8e-09  Score=90.19  Aligned_cols=108  Identities=21%  Similarity=0.332  Sum_probs=81.9

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+.......+..+|+|||+|+|.++             ..++.       .          .+..+++..|. |..++.
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~-------------~~l~~-------~----------~P~l~~~v~Dl-p~v~~~  138 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFA-------------IALAR-------A----------YPNLRATVFDL-PEVIEQ  138 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHH-------------HHHHH-------H----------STTSEEEEEE--HHHHCC
T ss_pred             hhhhccccccCccEEEeccCcchHHH-------------HHHHH-------H----------CCCCcceeecc-Hhhhhc
Confidence            45566667777779999999999988             44443       1          24667889997 566666


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~  190 (241)
                      +.+  .                               +++++..+|+. .+++.  +|+|+...++|++++.  .++|++
T Consensus       139 ~~~--~-------------------------------~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~  182 (241)
T PF00891_consen  139 AKE--A-------------------------------DRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRN  182 (241)
T ss_dssp             HHH--T-------------------------------TTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHH
T ss_pred             ccc--c-------------------------------cccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHH
Confidence            654  3                               58999999998 56655  9999999999998865  589999


Q ss_pred             HHHhccCC--cEEEEEecC
Q psy1420         191 AYRVLKPG--GRFLCLEFS  207 (241)
Q Consensus       191 ~~~~Lkpg--G~l~i~~~~  207 (241)
                      +++.|+||  |+|++.+.-
T Consensus       183 ~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  183 AAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             HHHHSEECTTEEEEEEEEE
T ss_pred             HHHHhCCCCCCeEEEEeec
Confidence            99999999  999998754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.5e-08  Score=90.22  Aligned_cols=134  Identities=16%  Similarity=0.231  Sum_probs=98.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+....+.+|||+|||.|..+             ..++.        .         ++..+++.+|.+..+++
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg-------------~~la~--------~---------~p~~~vtmvDvn~~Av~  196 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLG-------------LVLAK--------K---------SPQAKLTLVDVNARAVE  196 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHH-------------HHHHH--------h---------CCCCeEEEEecCHHHHH
Confidence            577888888877779999999999988             33332        1         24678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH-----HH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-----DK  186 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~-----~~  186 (241)
                      .+++++.                         .+++.  +..+...|..+.-  .++||+|+|+--+|.-.+.     .+
T Consensus       197 ~ar~Nl~-------------------------~N~~~--~~~v~~s~~~~~v--~~kfd~IisNPPfh~G~~v~~~~~~~  247 (300)
T COG2813         197 SARKNLA-------------------------ANGVE--NTEVWASNLYEPV--EGKFDLIISNPPFHAGKAVVHSLAQE  247 (300)
T ss_pred             HHHHhHH-------------------------HcCCC--ccEEEEecccccc--cccccEEEeCCCccCCcchhHHHHHH
Confidence            9999998                         55554  2255666655542  2389999999888864332     47


Q ss_pred             HHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEE
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTY  225 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~  225 (241)
                      .+..+.+.|++||.|.++-...-.....|++. |.-++.
T Consensus       248 ~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~-Fg~v~~  285 (300)
T COG2813         248 IIAAAARHLKPGGELWIVANRHLPYEKKLKEL-FGNVEV  285 (300)
T ss_pred             HHHHHHHhhccCCEEEEEEcCCCChHHHHHHh-cCCEEE
Confidence            89999999999999998876665555555555 443333

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.95  E-value=8e-09  Score=97.13  Aligned_cols=135  Identities=17%  Similarity=0.263  Sum_probs=95.7

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +...+++.++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++
T Consensus       229 ~~~~l~~~~g~~VLD~cagpGgkt-------------~~la~~~~----------------~~g~V~a~Dis~~rl~~~~  279 (431)
T PRK14903        229 VPLLMELEPGLRVLDTCAAPGGKT-------------TAIAELMK----------------DQGKILAVDISREKIQLVE  279 (431)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHH-------------HHHHHHcC----------------CCCEEEEEECCHHHHHHHH
Confidence            344567788899999999999988             44444211                2468999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeee-----eh-hhccc-----
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIA-----FG-IRNVT-----  182 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~-----~~-l~~~~-----  182 (241)
                      +++.                         +.++.  ++++...|+..++ ...++||.|++.     .+ ++.-+     
T Consensus       280 ~n~~-------------------------r~g~~--~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~  332 (431)
T PRK14903        280 KHAK-------------------------RLKLS--SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRR  332 (431)
T ss_pred             HHHH-------------------------HcCCC--eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHh
Confidence            9988                         55654  4788889987765 335689999852     21 22111     


Q ss_pred             -----------cHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420         183 -----------RIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY  225 (241)
Q Consensus       183 -----------~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~  225 (241)
                                 ...+.|..+.+.|||||+++.++.+.      +.++..++.. +|..++.
T Consensus       333 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~  393 (431)
T PRK14903        333 VNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDI  393 (431)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecc
Confidence                       12567899999999999998877655      4445555543 5765443

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.94  E-value=5.3e-09  Score=89.88  Aligned_cols=143  Identities=16%  Similarity=0.177  Sum_probs=96.6

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+...++.+||..|||.|...             .-++.                   .+..++|+|+|+.+++.+.+..
T Consensus        32 ~l~~~~~~rvLvPgCG~g~D~-------------~~La~-------------------~G~~VvGvDls~~Ai~~~~~e~   79 (218)
T PF05724_consen   32 SLALKPGGRVLVPGCGKGYDM-------------LWLAE-------------------QGHDVVGVDLSPTAIEQAFEEN   79 (218)
T ss_dssp             HHTTSTSEEEEETTTTTSCHH-------------HHHHH-------------------TTEEEEEEES-HHHHHHHHHHC
T ss_pred             hcCCCCCCeEEEeCCCChHHH-------------HHHHH-------------------CCCeEEEEecCHHHHHHHHHHh
Confidence            355677889999999999987             33333                   4678999999999999985543


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhccc--cHHHHHHHHHHh
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVT--RIDKALSEAYRV  194 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~--~~~~~l~~~~~~  194 (241)
                      ..             ............  ...+++++.++|+..++... ++||+|+-...++.++  ...+..+.+.++
T Consensus        80 ~~-------------~~~~~~~~~~~~--~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~l  144 (218)
T PF05724_consen   80 NL-------------EPTVTSVGGFKR--YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASL  144 (218)
T ss_dssp             TT-------------EEECTTCTTEEE--ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHC
T ss_pred             cc-------------CCCcccccceee--ecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHH
Confidence            20             000000000000  12247899999999976443 4799999988888764  457899999999


Q ss_pred             ccCCcEEEEE--ecCH------------HHHHHHHHHCCCceEEEEEe
Q psy1420         195 LKPGGRFLCL--EFSH------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       195 LkpgG~l~i~--~~~~------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |+|||.+++.  ++..            +++.+++. .+|++...+..
T Consensus       145 l~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~  191 (218)
T PF05724_consen  145 LKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEE  191 (218)
T ss_dssp             EEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred             hCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence            9999994443  3221            88888888 88988776653

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.94  E-value=1.1e-08  Score=96.00  Aligned_cols=133  Identities=17%  Similarity=0.313  Sum_probs=93.1

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .....+++.++.+|||+|||+|..+             ..++.    ..             ....++++|+++.+++.+
T Consensus       235 ~~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~----~~-------------~~~~v~a~D~s~~~l~~~  284 (427)
T PRK10901        235 LAATLLAPQNGERVLDACAAPGGKT-------------AHILE----LA-------------PQAQVVALDIDAQRLERV  284 (427)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCChHH-------------HHHHH----Hc-------------CCCEEEEEeCCHHHHHHH
Confidence            3445667788999999999999988             44433    10             125799999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeee------hhh------
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAF------GIR------  179 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~------~l~------  179 (241)
                      ++++.                         +.++.   ++++++|+..++  ...++||.|++.-      .++      
T Consensus       285 ~~n~~-------------------------~~g~~---~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~  336 (427)
T PRK10901        285 RENLQ-------------------------RLGLK---ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIK  336 (427)
T ss_pred             HHHHH-------------------------HcCCC---eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCcccc
Confidence            99988                         54543   578888887653  2346799998421      111      


Q ss_pred             cccc----------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEE
Q psy1420         180 NVTR----------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVT  224 (241)
Q Consensus       180 ~~~~----------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~  224 (241)
                      +...          ..+++..+.++|||||+++.++.+.      +.+...+++. +|.++.
T Consensus       337 ~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~  398 (427)
T PRK10901        337 WLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLD  398 (427)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence            1111          2478999999999999999876544      5566677665 576554

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.94  E-value=1.7e-08  Score=91.81  Aligned_cols=127  Identities=17%  Similarity=0.232  Sum_probs=80.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||.|.-.             ..+..                  .....++|+|++...++.|+++...+..
T Consensus        62 ~~~~VLDl~CGkGGDL-------------~Kw~~------------------~~i~~~vg~Dis~~si~ea~~Ry~~~~~  110 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDL-------------QKWQK------------------AKIKHYVGIDISEESIEEARERYKQLKK  110 (331)
T ss_dssp             TT-EEEEET-TTTTTH-------------HHHHH------------------TT-SEEEEEES-HHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEecCCCchhH-------------HHHHh------------------cCCCEEEEEeCCHHHHHHHHHHHHHhcc
Confidence            7789999999999877             45543                  1356899999999999999988731100


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CC--CCceeEEeeeehhhc-cc---cHHHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IE--SDSYSAYTIAFGIRN-VT---RIDKALSEAY  192 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~~D~V~~~~~l~~-~~---~~~~~l~~~~  192 (241)
                      ...+              ...+...   ...++.+|.....    +.  ..+||+|-|.+++|+ +.   ....+|.++.
T Consensus       111 ~~~~--------------~~~~~~f---~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs  173 (331)
T PF03291_consen  111 RNNS--------------KQYRFDF---IAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVS  173 (331)
T ss_dssp             STT---------------HTSEECC---EEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHH
T ss_pred             cccc--------------ccccccc---hhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHH
Confidence            0000              0000011   2456666655331    22  359999999999996 33   3457999999


Q ss_pred             HhccCCcEEEEEecCHHHHHHHHHH
Q psy1420         193 RVLKPGGRFLCLEFSHEEFKSMIES  217 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~~~~~~~l~~  217 (241)
                      +.|+|||+++.+......+...+++
T Consensus       174 ~~Lk~GG~FIgT~~d~~~i~~~l~~  198 (331)
T PF03291_consen  174 SLLKPGGYFIGTTPDSDEIVKRLRE  198 (331)
T ss_dssp             HTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred             HhcCCCCEEEEEecCHHHHHHHHHh
Confidence            9999999999988777666444444

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.93  E-value=3.7e-08  Score=87.22  Aligned_cols=146  Identities=14%  Similarity=0.199  Sum_probs=111.7

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .....+|||+.||.|...             ...+.       ..+.        ....+...|+++.+++.+++.+.  
T Consensus       133 ~g~pvrIlDIAaG~GRYv-------------lDal~-------~~~~--------~~~~i~LrDys~~Nv~~g~~li~--  182 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYV-------------LDALE-------KHPE--------RPDSILLRDYSPINVEKGRALIA--  182 (311)
T ss_pred             cCCceEEEEeccCCcHHH-------------HHHHH-------hCCC--------CCceEEEEeCCHHHHHHHHHHHH--
Confidence            356779999999999866             33332       2211        23578999999999999999998  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CC--CCceeEEeeeehhhcccc---HHHHHHHHHHh
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IE--SDSYSAYTIAFGIRNVTR---IDKALSEAYRV  194 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~  194 (241)
                                             ..++. +-++|.+.|+.... +.  ....++++.+..+..++|   ....++.+.+.
T Consensus       183 -----------------------~~gL~-~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~a  238 (311)
T PF12147_consen  183 -----------------------ERGLE-DIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARA  238 (311)
T ss_pred             -----------------------HcCCc-cceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHH
Confidence                                   66776 34589999977642 11  335699999988888887   45689999999


Q ss_pred             ccCCcEEEEEe--cCH-------------------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         195 LKPGGRFLCLE--FSH-------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       195 LkpgG~l~i~~--~~~-------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      +.|||+++...  +++                         +++.++++.+||+-++..-=.+|+..+-.|+|
T Consensus       239 l~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  239 LEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             hCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence            99999998764  332                         89999999999996666555789988887765

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.93  E-value=1.5e-08  Score=97.01  Aligned_cols=126  Identities=16%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.       ..          +..+++++|+|+.+++.++.++.    
T Consensus       138 ~~~~VLDlG~GsG~ia-------------i~la~-------~~----------p~~~v~avDis~~al~~A~~N~~----  183 (506)
T PRK01544        138 KFLNILELGTGSGCIA-------------ISLLC-------EL----------PNANVIATDISLDAIEVAKSNAI----  183 (506)
T ss_pred             CCCEEEEccCchhHHH-------------HHHHH-------HC----------CCCeEEEEECCHHHHHHHHHHHH----
Confidence            3468999999999988             33332       00          24689999999999999999987    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh--------------hcc-------
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI--------------RNV-------  181 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l--------------~~~-------  181 (241)
                                           ..++. .+++++.+|+.+. .+.++||+|+++--.              .+-       
T Consensus       184 ---------------------~~~l~-~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~g  240 (506)
T PRK01544        184 ---------------------KYEVT-DRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFA  240 (506)
T ss_pred             ---------------------HcCCc-cceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcC
Confidence                                 44544 4678888886542 234579999984210              010       


Q ss_pred             -----ccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420         182 -----TRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       182 -----~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~  226 (241)
                           ..+..+++.+.++|+|||.+++. .+.   +.+.+++.+.||..+++.
T Consensus       241 g~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~q~~~v~~~~~~~g~~~~~~~  292 (506)
T PRK01544        241 EEDGLQAYFIIAENAKQFLKPNGKIILE-IGFKQEEAVTQIFLDHGYNIESVY  292 (506)
T ss_pred             CccHHHHHHHHHHHHHHhccCCCEEEEE-ECCchHHHHHHHHHhcCCCceEEE
Confidence                 12346778889999999998763 332   788999999999866544

>KOG3045|consensus

Probab=98.92  E-value=1.9e-08  Score=87.52  Aligned_cols=75  Identities=23%  Similarity=0.412  Sum_probs=64.7

Q ss_pred             eeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEE
Q psy1420         152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       152 ~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~  226 (241)
                      -+++.+|+..+|.+++++|+++++.+|. .++...++.+++|+|+|||.+++.+...     ..+...+...||.+....
T Consensus       212 ~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d  290 (325)
T KOG3045|consen  212 ERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD  290 (325)
T ss_pred             CceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence            4578899999999999999999888774 5788899999999999999999988555     789999999999976554


Q ss_pred             E
Q psy1420         227 N  227 (241)
Q Consensus       227 ~  227 (241)
                      .
T Consensus       291 ~  291 (325)
T KOG3045|consen  291 V  291 (325)
T ss_pred             h
Confidence            3

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=2.2e-08  Score=94.36  Aligned_cols=137  Identities=16%  Similarity=0.263  Sum_probs=94.5

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+...+...++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.+
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~~~~----------------~~~~v~avDi~~~~l~~~  291 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKT-------------THIAELLK----------------NTGKVVALDIHEHKLKLI  291 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHHH
Confidence            3444566678889999999999988             44443111                246899999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeeh------hhccc----
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFG------IRNVT----  182 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~------l~~~~----  182 (241)
                      ++++.                         +.++.  +++++++|+...+. -.++||+|++.--      +.+.+    
T Consensus       292 ~~n~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~  344 (444)
T PRK14902        292 EENAK-------------------------RLGLT--NIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKY  344 (444)
T ss_pred             HHHHH-------------------------HcCCC--eEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhh
Confidence            99988                         66665  48889999876531 1267999986421      11111    


Q ss_pred             -----c-------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC-CceEEEE
Q psy1420         183 -----R-------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG-FQYVTYE  226 (241)
Q Consensus       183 -----~-------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G-f~~~~~~  226 (241)
                           +       ...+|+.+.++|||||+++.++.+.      ..+...+++.+ |..+...
T Consensus       345 ~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~  407 (444)
T PRK14902        345 NKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQ  407 (444)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccc
Confidence                 1       1357999999999999998755332      44556666653 7766543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.89  E-value=5.2e-08  Score=85.33  Aligned_cols=124  Identities=13%  Similarity=0.077  Sum_probs=84.3

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +.+|||+|||+|..+             ..++.    .   .          ...+++++|+++.+++.+++++.     
T Consensus        87 ~~~vLDlg~GsG~i~-------------l~la~----~---~----------~~~~v~~vDis~~al~~A~~N~~-----  131 (251)
T TIGR03704        87 TLVVVDLCCGSGAVG-------------AALAA----A---L----------DGIELHAADIDPAAVRCARRNLA-----  131 (251)
T ss_pred             CCEEEEecCchHHHH-------------HHHHH----h---C----------CCCEEEEEECCHHHHHHHHHHHH-----
Confidence            458999999999988             33332    0   0          23579999999999999999987     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CC-CCCceeEEeeeehh------hcc--------------
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PI-ESDSYSAYTIAFGI------RNV--------------  181 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~D~V~~~~~l------~~~--------------  181 (241)
                                          ..+     .+++++|+.+. +. ..++||+|+++--.      ...              
T Consensus       132 --------------------~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~  186 (251)
T TIGR03704       132 --------------------DAG-----GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALD  186 (251)
T ss_pred             --------------------HcC-----CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhc
Confidence                                221     35667776542 21 12579999976311      100              


Q ss_pred             ------ccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEE
Q psy1420         182 ------TRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       182 ------~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~  227 (241)
                            .-...++..+.++|+|||++++.....  .++.+++++.||...-...
T Consensus       187 gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~  240 (251)
T TIGR03704       187 GGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASS  240 (251)
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEc
Confidence                  013477788889999999998754322  7788899999997654443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=5.6e-08  Score=86.52  Aligned_cols=136  Identities=21%  Similarity=0.246  Sum_probs=94.4

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      +|||+|||+|..+             ..++.       .          .....++++|+|+.+++.|+.++.       
T Consensus       113 ~ilDlGTGSG~ia-------------i~la~-------~----------~~~~~V~a~Dis~~Al~~A~~Na~-------  155 (280)
T COG2890         113 RILDLGTGSGAIA-------------IALAK-------E----------GPDAEVIAVDISPDALALARENAE-------  155 (280)
T ss_pred             cEEEecCChHHHH-------------HHHHh-------h----------CcCCeEEEEECCHHHHHHHHHHHH-------
Confidence            7999999999988             43333       1          134689999999999999999998       


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee--hhh-----------------------c
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF--GIR-----------------------N  180 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~--~l~-----------------------~  180 (241)
                                        ..++.  ++.++..|..+. . .++||+|+++-  .-.                       .
T Consensus       156 ------------------~~~l~--~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dG  213 (280)
T COG2890         156 ------------------RNGLV--RVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDG  213 (280)
T ss_pred             ------------------HcCCc--cEEEEeeecccc-c-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccH
Confidence                              44442  344444454432 1 23788887651  100                       0


Q ss_pred             cccHHHHHHHHHHhccCCcEEEEEec--CHHHHHHHHHHCC-CceEEEEEecCceeEEEeeec
Q psy1420         181 VTRIDKALSEAYRVLKPGGRFLCLEF--SHEEFKSMIESAG-FQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       181 ~~~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~l~~~G-f~~~~~~~~~~~~~~~~~~~~  240 (241)
                      ..-..+++.++.+.|+|||.+++-.-  ..+.+++++.+.| |..+...+-.+|...+..+.+
T Consensus       214 l~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~  276 (280)
T COG2890         214 LEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL  276 (280)
T ss_pred             HHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence            11235788889999999998877432  3388999999999 777777777777777766543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.88  E-value=8.1e-08  Score=84.83  Aligned_cols=190  Identities=16%  Similarity=0.180  Sum_probs=123.1

Q ss_pred             HHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC----CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420           5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG----PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ   80 (241)
Q Consensus         5 ~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~   80 (241)
                      +...+..+..-|..............+.+.+.+.+.    .+.+.+||-.|||.|.++             ..++.    
T Consensus        14 V~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa-------------~Eia~----   76 (270)
T PF07942_consen   14 VRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLA-------------WEIAK----   76 (270)
T ss_pred             HHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHH-------------HHHhh----
Confidence            344444455545442222222223334455555544    245678999999999998             55555    


Q ss_pred             hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecc----------eeeeeecc--cc--C
Q psy1420          81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG----------IRNVTRID--KI--D  146 (241)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~--~  146 (241)
                                     .+..+.+.|.|-.|+-...-... ......++..+++...          .+.+.-.+  ..  -
T Consensus        77 ---------------~G~~~~gnE~S~~Mll~s~fiLn-~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~  140 (270)
T PF07942_consen   77 ---------------LGYAVQGNEFSYFMLLASNFILN-HCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSEL  140 (270)
T ss_pred             ---------------ccceEEEEEchHHHHHHHHHHHc-ccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCccccc
Confidence                           45688999999999766554333 1122333333333332          22222221  00  0


Q ss_pred             CCCCCeeEEecccCCCCCCC---CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE------------------Ee
Q psy1420         147 IPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC------------------LE  205 (241)
Q Consensus       147 ~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i------------------~~  205 (241)
                      -.+.++....+|+.+...++   +++|+|++++.+...++.-..++.+.++|||||+.+=                  ++
T Consensus       141 ~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sve  220 (270)
T PF07942_consen  141 PSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVE  220 (270)
T ss_pred             CCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccC
Confidence            11257888999988875444   7999999999999989999999999999999997662                  23


Q ss_pred             cCHHHHHHHHHHCCCceEEEEE
Q psy1420         206 FSHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       206 ~~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .+.+++..++++.||++++.+.
T Consensus       221 Ls~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  221 LSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCHHHHHHHHHHCCCEEEEEEE
Confidence            4449999999999999988776

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.88  E-value=4.6e-09  Score=88.82  Aligned_cols=138  Identities=17%  Similarity=0.130  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|+..||++|..+           |+..++  +.+.......        ...++.|+|+|+.+++.|++...   
T Consensus        30 ~~~lrIWSagCStGeE~-----------YSlAml--l~e~~~~~~~--------~~~~I~atDi~~~~L~~Ar~G~Y---   85 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEP-----------YSLAML--LLELLPGALG--------WDFRILATDISPSALEKARAGIY---   85 (196)
T ss_dssp             -S-EEEEETT-TTTHHH-----------HHHHHH--HHHHH-S-TT---------SEEEEEEES-HHHHHHHHHTEE---
T ss_pred             CCCeEEEECCCCCChhH-----------HHHHHH--HHHHhcccCC--------CceEEEEEECCHHHHHHHHhCCC---
Confidence            35679999999999987           444442  2222222111        25689999999999999988654   


Q ss_pred             Cccccccccceecceeeeeec------cccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRI------DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYR  193 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~  193 (241)
                       .....+.-+-...-+.+...      .+..+. ..+.|...|+.+.+...+.||+|+|.+++-+++..  .++++.+++
T Consensus        86 -~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr-~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~  163 (196)
T PF01739_consen   86 -PERSLRGLPPAYLRRYFTERDGGGYRVKPELR-KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHR  163 (196)
T ss_dssp             -EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHH-TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGG
T ss_pred             -CHHHHhhhHHHHHHHhccccCCCceeEChHHc-CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHH
Confidence             11111111101101111011      111122 47899999988843446789999999999887654  799999999


Q ss_pred             hccCCcEEEEEe
Q psy1420         194 VLKPGGRFLCLE  205 (241)
Q Consensus       194 ~LkpgG~l~i~~  205 (241)
                      .|+|||+|++..
T Consensus       164 ~L~pgG~L~lG~  175 (196)
T PF01739_consen  164 SLKPGGYLFLGH  175 (196)
T ss_dssp             GEEEEEEEEE-T
T ss_pred             HcCCCCEEEEec
Confidence            999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.87  E-value=2.2e-08  Score=88.20  Aligned_cols=126  Identities=17%  Similarity=0.218  Sum_probs=88.2

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      ..+.++++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++++
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt-------------~~la~~~~----------------~~g~v~a~D~~~~~l~~~~~n  115 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKT-------------TQISALMK----------------NEGAIVANEFSKSRTKVLIAN  115 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHH-------------HHHHHHcC----------------CCCEEEEEcCCHHHHHHHHHH
Confidence            3556788899999999999988             44333111                235799999999999999999


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hhhccc--------
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GIRNVT--------  182 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l~~~~--------  182 (241)
                      +.                         +.++.  ++.+...|+...+...++||+|++.-      .++.-+        
T Consensus       116 ~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~  168 (264)
T TIGR00446       116 IN-------------------------RCGVL--NVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSE  168 (264)
T ss_pred             HH-------------------------HcCCC--cEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCH
Confidence            88                         55554  57888888776554445699998531      111111        


Q ss_pred             --------cHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC
Q psy1420         183 --------RIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA  218 (241)
Q Consensus       183 --------~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~  218 (241)
                              ...++|+.+.+.|||||+|+.++.+.      +-++.+++..
T Consensus       169 ~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~  218 (264)
T TIGR00446       169 EDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR  218 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence                    12468999999999999998876444      3345555553

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.85  E-value=3.8e-08  Score=83.37  Aligned_cols=140  Identities=17%  Similarity=0.214  Sum_probs=94.2

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+.. .+.+|||||||||..+             ..+.+    .+             +.....-.|+++.....
T Consensus        16 ~vL~~~l~~-~~~~vLEiaSGtGqHa-------------~~FA~----~l-------------P~l~WqPSD~~~~~~~s   64 (204)
T PF06080_consen   16 EVLKQYLPD-SGTRVLEIASGTGQHA-------------VYFAQ----AL-------------PHLTWQPSDPDDNLRPS   64 (204)
T ss_pred             HHHHHHhCc-cCceEEEEcCCccHHH-------------HHHHH----HC-------------CCCEEcCCCCChHHHhh
Confidence            334444432 2326999999999988             33333    11             24456677888888777


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--------CCCceeEEeeeehhhcc--c
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--------ESDSYSAYTIAFGIRNV--T  182 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~V~~~~~l~~~--~  182 (241)
                      +.+.+.                         ..+.++ -...+..|+...+.        ..++||+|+|.+.+|-.  .
T Consensus        65 I~a~~~-------------------------~~~~~N-v~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~  118 (204)
T PF06080_consen   65 IRAWIA-------------------------EAGLPN-VRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWS  118 (204)
T ss_pred             HHHHHH-------------------------hcCCcc-cCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHH
Confidence            777665                         223221 11223455544422        24589999999999864  4


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEecCH-----------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLEFSH-----------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      .-+.+++.+.++|+|||.|++.-...                             +++.++.+++|+..++...+.
T Consensus       119 ~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MP  194 (204)
T PF06080_consen  119 AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMP  194 (204)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccC
Confidence            56799999999999999999854222                             889999999999988776663

The function of this family is unknown.

>PRK01581 speE spermidine synthase; Validated

Probab=98.85  E-value=4.1e-08  Score=89.94  Aligned_cols=135  Identities=19%  Similarity=0.280  Sum_probs=91.6

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      ..+||++|||+|..+             ..++.        .         ....+++++|+++.+++.|+.... ++  
T Consensus       151 PkrVLIIGgGdG~tl-------------relLk--------~---------~~v~~It~VEIDpeVIelAr~~~~-L~--  197 (374)
T PRK01581        151 PKRVLILGGGDGLAL-------------REVLK--------Y---------ETVLHVDLVDLDGSMINMARNVPE-LV--  197 (374)
T ss_pred             CCEEEEECCCHHHHH-------------HHHHh--------c---------CCCCeEEEEeCCHHHHHHHHhccc-cc--
Confidence            449999999999866             44433        1         134689999999999999986211 00  


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc---ccc--HHHHHHHHHHhccC
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN---VTR--IDKALSEAYRVLKP  197 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~---~~~--~~~~l~~~~~~Lkp  197 (241)
                                       ...+..+..++++++.+|+... +...++||+|++...-..   ...  -..+++.+++.|+|
T Consensus       198 -----------------~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP  260 (374)
T PRK01581        198 -----------------SLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTE  260 (374)
T ss_pred             -----------------hhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCC
Confidence                             0001122236899999997763 334568999998642110   001  15688999999999


Q ss_pred             CcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420         198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ||++++..-+.       ..+.+.++++|+....+...
T Consensus       261 gGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~  298 (374)
T PRK01581        261 DGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI  298 (374)
T ss_pred             CcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence            99998764433       44678899999988777765

>PHA03411 putative methyltransferase; Provisional

Probab=98.83  E-value=2.2e-08  Score=88.58  Aligned_cols=118  Identities=9%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      ..+.+|||+|||+|..+             ..++.       ..          ...+++++|+++.+++.++++..   
T Consensus        63 ~~~grVLDLGcGsGils-------------l~la~-------r~----------~~~~V~gVDisp~al~~Ar~n~~---  109 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLS-------------FCMLH-------RC----------KPEKIVCVELNPEFARIGKRLLP---  109 (279)
T ss_pred             ccCCeEEEcCCCCCHHH-------------HHHHH-------hC----------CCCEEEEEECCHHHHHHHHHhCc---
Confidence            44569999999999877             32222       00          13579999999999999876532   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc------------------
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR------------------  183 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~------------------  183 (241)
                                                   +++++++|+.+... ..+||+|+++-.+.+.+.                  
T Consensus       110 -----------------------------~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~  159 (279)
T PHA03411        110 -----------------------------EAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKV  159 (279)
T ss_pred             -----------------------------CCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCcccccc
Confidence                                         46788899887643 468999999655543211                  


Q ss_pred             --HHHHHHHHHHhccCCcEEEEEec---------CHHHHHHHHHHCCCce
Q psy1420         184 --IDKALSEAYRVLKPGGRFLCLEF---------SHEEFKSMIESAGFQY  222 (241)
Q Consensus       184 --~~~~l~~~~~~LkpgG~l~i~~~---------~~~~~~~~l~~~Gf~~  222 (241)
                        ..+.+.....+|+|+|.+.+.-.         +.++.+++++++||..
T Consensus       160 l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~  209 (279)
T PHA03411        160 MTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT  209 (279)
T ss_pred             ccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence              24667777889999998766422         2299999999999964

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.83  E-value=3.3e-08  Score=98.15  Aligned_cols=130  Identities=13%  Similarity=0.153  Sum_probs=94.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                  ....+++++|+|+.+++.+++++.    
T Consensus       538 ~g~rVLDlf~gtG~~s-------------l~aa~------------------~Ga~~V~~vD~s~~al~~a~~N~~----  582 (702)
T PRK11783        538 KGKDFLNLFAYTGTAS-------------VHAAL------------------GGAKSTTTVDMSNTYLEWAERNFA----  582 (702)
T ss_pred             CCCeEEEcCCCCCHHH-------------HHHHH------------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence            4679999999999998             43333                  023469999999999999999998    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeeh-----------hhccccHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFG-----------IRNVTRIDKALSE  190 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~-----------l~~~~~~~~~l~~  190 (241)
                                           ..++...+++++++|+.+. .....+||+|++.--           .....+....+..
T Consensus       583 ---------------------~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~  641 (702)
T PRK11783        583 ---------------------LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKD  641 (702)
T ss_pred             ---------------------HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHH
Confidence                                 5555424688999997653 111458999997421           1123345678888


Q ss_pred             HHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.++|+|||.+++.....  ....+.+.++|+.+..++..
T Consensus       642 a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~  681 (702)
T PRK11783        642 AKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAK  681 (702)
T ss_pred             HHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecC
Confidence            999999999998765444  44478889999998877755

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.83  E-value=2.7e-08  Score=85.82  Aligned_cols=138  Identities=9%  Similarity=-0.019  Sum_probs=93.8

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +...++.+||+.|||.|..+             .-++.                   .+..++|+|+|+..++.+.+...
T Consensus        39 l~~~~~~rvLvPgCGkg~D~-------------~~LA~-------------------~G~~V~GvDlS~~Ai~~~~~e~~   86 (226)
T PRK13256         39 LNINDSSVCLIPMCGCSIDM-------------LFFLS-------------------KGVKVIGIELSEKAVLSFFSQNT   86 (226)
T ss_pred             cCCCCCCeEEEeCCCChHHH-------------HHHHh-------------------CCCcEEEEecCHHHHHHHHHHcC
Confidence            34446779999999999987             33333                   46789999999999999876432


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTR--IDKALSEAYR  193 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~--~~~~l~~~~~  193 (241)
                      ..|         ++.    ....  .......++++.++|+.+++..   .++||+|+....+++++.  ..+..+.+.+
T Consensus        87 ~~~---------~~~----~~~~--~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~  151 (226)
T PRK13256         87 INY---------EVI----HGND--YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLE  151 (226)
T ss_pred             CCc---------cee----cccc--cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHH
Confidence            000         000    0000  0011123689999999998632   258999999988888764  4688999999


Q ss_pred             hccCCcEEEEEecCH-------------HHHHHHHHHCCCceEE
Q psy1420         194 VLKPGGRFLCLEFSH-------------EEFKSMIESAGFQYVT  224 (241)
Q Consensus       194 ~LkpgG~l~i~~~~~-------------~~~~~~l~~~Gf~~~~  224 (241)
                      +|+|||.++++.+..             +++++++.. +|.+..
T Consensus       152 lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i~~  194 (226)
T PRK13256        152 VCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA-KIKFEL  194 (226)
T ss_pred             HhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC-CceEEE
Confidence            999999988876532             677766643 344433

>KOG2940|consensus

Probab=98.82  E-value=9.7e-09  Score=88.08  Aligned_cols=123  Identities=12%  Similarity=0.183  Sum_probs=99.3

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      -..++|+|||-|...             .++..                  ....+++.+|-|-.|++.++.. +     
T Consensus        73 fp~a~diGcs~G~v~-------------rhl~~------------------e~vekli~~DtS~~M~~s~~~~-q-----  115 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVK-------------RHLRG------------------EGVEKLIMMDTSYDMIKSCRDA-Q-----  115 (325)
T ss_pred             Ccceeecccchhhhh-------------HHHHh------------------cchhheeeeecchHHHHHhhcc-C-----
Confidence            346999999999988             44433                  1356899999999999998743 3     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC  203 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i  203 (241)
                                          ++++.   +.....|-+.+++.++++|+|+++.++||+++....+..++..|||+|.++.
T Consensus       116 --------------------dp~i~---~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  116 --------------------DPSIE---TSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             --------------------CCceE---EEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence                                33333   6677888888999999999999999999999999999999999999999986


Q ss_pred             EecCH-------------------------------HHHHHHHHHCCCceEEEE
Q psy1420         204 LEFSH-------------------------------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       204 ~~~~~-------------------------------~~~~~~l~~~Gf~~~~~~  226 (241)
                      .-+..                               .++-.++..+||....+.
T Consensus       173 smlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD  226 (325)
T KOG2940|consen  173 SMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD  226 (325)
T ss_pred             HHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence            54333                               788889999999875544

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.82  E-value=4.7e-08  Score=92.16  Aligned_cols=140  Identities=13%  Similarity=0.110  Sum_probs=96.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+++.+...++.+|||+|||+|..+             ..++.                   ....++++|+|+.+
T Consensus       284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~s-------------l~la~-------------------~~~~V~gvD~s~~a  331 (443)
T PRK13168        284 KMVARALEWLDPQPGDRVLDLFCGLGNFT-------------LPLAR-------------------QAAEVVGVEGVEAM  331 (443)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeccCCHHH-------------HHHHH-------------------hCCEEEEEeCCHHH
Confidence            34556666667677889999999999988             44443                   24579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRID  185 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~~  185 (241)
                      ++.+++++.                         ..++.  ++++.++|+.+.    +...++||+|++.---..   ..
T Consensus       332 l~~A~~n~~-------------------------~~~~~--~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~  381 (443)
T PRK13168        332 VERARENAR-------------------------RNGLD--NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AA  381 (443)
T ss_pred             HHHHHHHHH-------------------------HcCCC--ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hH
Confidence            999999887                         44544  588999997642    233467999986422111   23


Q ss_pred             HHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCcee
Q psy1420         186 KALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVV  233 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~  233 (241)
                      ..++.+.+ ++|++.++++--..   .++. .|.+.||++.++..+.+--.
T Consensus       382 ~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~i~~~DmFP~  430 (443)
T PRK13168        382 EVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKRAGMLDMFPH  430 (443)
T ss_pred             HHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEEEEEeccCCC
Confidence            44555554 68888888764322   4444 44578999999988754433

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.80  E-value=1.1e-08  Score=87.96  Aligned_cols=140  Identities=19%  Similarity=0.281  Sum_probs=101.5

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCC-CceeecCChHhHHHHHHHH
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ-FPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~  117 (241)
                      ..++.+.+|||.+.|-|+++             +..+.                   .+. .++.+|.+++.++.+.-+-
T Consensus       130 V~~~~G~rVLDtC~GLGYtA-------------i~a~~-------------------rGA~~VitvEkdp~VLeLa~lNP  177 (287)
T COG2521         130 VKVKRGERVLDTCTGLGYTA-------------IEALE-------------------RGAIHVITVEKDPNVLELAKLNP  177 (287)
T ss_pred             eccccCCEeeeeccCccHHH-------------HHHHH-------------------cCCcEEEEEeeCCCeEEeeccCC
Confidence            34567999999999999999             55554                   344 8999999999888765432


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeee---ehhhccccHHHHHHHHH
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIA---FGIRNVTRIDKALSEAY  192 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~---~~l~~~~~~~~~l~~~~  192 (241)
                      -                         ..++....++++.+|+.+.  .+.+.+||+|+.-   +++..--=...+-++++
T Consensus       178 w-------------------------Sr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~  232 (287)
T COG2521         178 W-------------------------SRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELY  232 (287)
T ss_pred             C-------------------------CccccccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHH
Confidence            2                         2233324678899997765  3667789999832   11111001257889999


Q ss_pred             HhccCCcEEEEEecCH----------HHHHHHHHHCCCceEEEEEecCceeEE
Q psy1420         193 RVLKPGGRFLCLEFSH----------EEFKSMIESAGFQYVTYENLTFGVVAI  235 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~  235 (241)
                      |+|||||+++-..-.+          ..+.+.|+++||..++......|+.+.
T Consensus       233 RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~  285 (287)
T COG2521         233 RILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALGVVAV  285 (287)
T ss_pred             HHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccceEEe
Confidence            9999999999765333          889999999999998888777787654

>PRK03612 spermidine synthase; Provisional

Probab=98.79  E-value=3.8e-08  Score=94.63  Aligned_cols=130  Identities=13%  Similarity=0.173  Sum_probs=88.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.++++.. ++
T Consensus       296 ~~~~rVL~IG~G~G~~~-------------~~ll~--------~---------~~v~~v~~VEid~~vi~~ar~~~~-l~  344 (521)
T PRK03612        296 ARPRRVLVLGGGDGLAL-------------REVLK--------Y---------PDVEQVTLVDLDPAMTELARTSPA-LR  344 (521)
T ss_pred             CCCCeEEEEcCCccHHH-------------HHHHh--------C---------CCcCeEEEEECCHHHHHHHHhCCc-ch
Confidence            34568999999999987             44433        1         023689999999999999997421 00


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhcccc-----HHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~-----~~~~l~~~~~~L  195 (241)
                                         .........++++++..|.... ....++||+|++...-...+.     ...+++.+.+.|
T Consensus       345 -------------------~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L  405 (521)
T PRK03612        345 -------------------ALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRL  405 (521)
T ss_pred             -------------------hhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhc
Confidence                               0001122335789999997763 223468999998754332222     136889999999


Q ss_pred             cCCcEEEEEecCH-------HHHHHHHHHCCCc
Q psy1420         196 KPGGRFLCLEFSH-------EEFKSMIESAGFQ  221 (241)
Q Consensus       196 kpgG~l~i~~~~~-------~~~~~~l~~~Gf~  221 (241)
                      ||||.+++...++       .++.+.+++.||.
T Consensus       406 ~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~  438 (521)
T PRK03612        406 APDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA  438 (521)
T ss_pred             CCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence            9999998854322       6788889999993

>PRK04457 spermidine synthase; Provisional

Probab=98.78  E-value=1.5e-07  Score=82.98  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..+..    .             .+..+++++|+++.+++.+++.+.   
T Consensus        65 ~~~~~vL~IG~G~G~l~-------------~~l~~----~-------------~p~~~v~~VEidp~vi~~A~~~f~---  111 (262)
T PRK04457         65 PRPQHILQIGLGGGSLA-------------KFIYT----Y-------------LPDTRQTAVEINPQVIAVARNHFE---  111 (262)
T ss_pred             CCCCEEEEECCCHhHHH-------------HHHHH----h-------------CCCCeEEEEECCHHHHHHHHHHcC---
Confidence            34568999999999988             32222    0             035689999999999999998765   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehh-hccc---cHHHHHHHHHHhcc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGI-RNVT---RIDKALSEAYRVLK  196 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l-~~~~---~~~~~l~~~~~~Lk  196 (241)
                                            ..... ++++++.+|+... +...++||+|++...- ...+   ....+++.+.++|+
T Consensus       112 ----------------------~~~~~-~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~  168 (262)
T PRK04457        112 ----------------------LPENG-ERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALS  168 (262)
T ss_pred             ----------------------CCCCC-CceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcC
Confidence                                  22221 4788999997543 2223589999975311 1111   13689999999999


Q ss_pred             CCcEEEEEecCH
Q psy1420         197 PGGRFLCLEFSH  208 (241)
Q Consensus       197 pgG~l~i~~~~~  208 (241)
                      |||++++..+..
T Consensus       169 pgGvlvin~~~~  180 (262)
T PRK04457        169 SDGIFVVNLWSR  180 (262)
T ss_pred             CCcEEEEEcCCC
Confidence            999999854433

>PRK00811 spermidine synthase; Provisional

Probab=98.77  E-value=3.6e-08  Score=87.78  Aligned_cols=130  Identities=13%  Similarity=0.171  Sum_probs=85.8

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+.+||++|||+|..+             ..++.        .         ....+++++|+++.+++.+++.+..+  
T Consensus        76 ~p~~VL~iG~G~G~~~-------------~~~l~--------~---------~~~~~V~~VEid~~vv~~a~~~~~~~--  123 (283)
T PRK00811         76 NPKRVLIIGGGDGGTL-------------REVLK--------H---------PSVEKITLVEIDERVVEVCRKYLPEI--  123 (283)
T ss_pred             CCCEEEEEecCchHHH-------------HHHHc--------C---------CCCCEEEEEeCCHHHHHHHHHHhHHh--
Confidence            4568999999999988             44433        1         02457999999999999999876511  


Q ss_pred             ccccccccceecceeeeeeccccCC-CCCCeeEEecccCCC-CCCCCceeEEeeeehhhcccc----HHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lk  196 (241)
                                           ..+. ..++++++.+|+... +...++||+|++...-...+.    ...+++.+++.|+
T Consensus       124 ---------------------~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~  182 (283)
T PRK00811        124 ---------------------AGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK  182 (283)
T ss_pred             ---------------------ccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC
Confidence                                 1111 235789999997653 223568999998543222111    2577899999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEE
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~  226 (241)
                      |||++++...+.       ..+.+.+++. |..+...
T Consensus       183 ~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~  218 (283)
T PRK00811        183 EDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPY  218 (283)
T ss_pred             CCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEE
Confidence            999988753222       3344445555 5555443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.76  E-value=7e-08  Score=79.20  Aligned_cols=108  Identities=9%  Similarity=0.034  Sum_probs=77.5

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.++..++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++.
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt-------------~~l~~-------------------~~~~v~~vE~~~~~~~~   50 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALT-------------EELLE-------------------RAARVTAIEIDPRLAPR   50 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHH-------------HHHHh-------------------cCCeEEEEECCHHHHHH
Confidence            45666777778889999999999998             54444                   34679999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      +++++.                         .    .++++++.+|+...+.+..++|.|+++.-.+..   ...+..+.
T Consensus        51 ~~~~~~-------------------------~----~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~---~~~i~~~l   98 (169)
T smart00650       51 LREKFA-------------------------A----ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS---TPILFKLL   98 (169)
T ss_pred             HHHHhc-------------------------c----CCCEEEEECchhcCCccccCCCEEEECCCcccH---HHHHHHHH
Confidence            988775                         2    136889999999887766679999887554421   23333333


Q ss_pred             Hh--ccCCcEEEEE
Q psy1420         193 RV--LKPGGRFLCL  204 (241)
Q Consensus       193 ~~--LkpgG~l~i~  204 (241)
                      +.  +.++|.+++.
T Consensus        99 ~~~~~~~~~~l~~q  112 (169)
T smart00650       99 EEPPAFRDAVLMVQ  112 (169)
T ss_pred             hcCCCcceEEEEEE
Confidence            32  3467777653

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.75  E-value=4.1e-08  Score=85.17  Aligned_cols=104  Identities=11%  Similarity=0.059  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++..++                ...+++++|+++.+.+.+++++.   
T Consensus        67 ~~~~~vLEiGt~~G~s~-------------l~la~~~~----------------~~g~v~tiD~d~~~~~~A~~n~~---  114 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSL-------------LTTALALP----------------EDGRITAIDIDKEAYEVGLEFIK---  114 (234)
T ss_pred             hCCCEEEEecCcccHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            45679999999999876             32322110                35689999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                            +.++. .+++++.+|+.+. +     .+.++||+|++...   -+.+...+..+.++|
T Consensus       115 ----------------------~~gl~-~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll  168 (234)
T PLN02781        115 ----------------------KAGVD-HKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLV  168 (234)
T ss_pred             ----------------------HcCCC-CcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhc
Confidence                                  77776 6789999998653 1     11468999987432   134567888999999


Q ss_pred             cCCcEEEE
Q psy1420         196 KPGGRFLC  203 (241)
Q Consensus       196 kpgG~l~i  203 (241)
                      +|||.+++
T Consensus       169 ~~GG~ii~  176 (234)
T PLN02781        169 KVGGIIAF  176 (234)
T ss_pred             CCCeEEEE
Confidence            99999886

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.73  E-value=6.3e-08  Score=81.81  Aligned_cols=121  Identities=25%  Similarity=0.279  Sum_probs=86.1

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      .+||+|||.|.+.             ..++.       .          .+...++|+|+....+..+.+++.       
T Consensus        20 l~lEIG~G~G~~l-------------~~~A~-------~----------~Pd~n~iGiE~~~~~v~~a~~~~~-------   62 (195)
T PF02390_consen   20 LILEIGCGKGEFL-------------IELAK-------R----------NPDINFIGIEIRKKRVAKALRKAE-------   62 (195)
T ss_dssp             EEEEET-TTSHHH-------------HHHHH-------H----------STTSEEEEEES-HHHHHHHHHHHH-------
T ss_pred             eEEEecCCCCHHH-------------HHHHH-------H----------CCCCCEEEEecchHHHHHHHHHHH-------
Confidence            8999999999988             44433       1          256789999999999999998888       


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--CCCCceeEEeeeehhhccc-----c---HHHHHHHHHHh
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--IESDSYSAYTIAFGIRNVT-----R---IDKALSEAYRV  194 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~V~~~~~l~~~~-----~---~~~~l~~~~~~  194 (241)
                                        +.+++  ++.++++|+... +  .+++++|.|...+.=-+..     .   -..+++.+.++
T Consensus        63 ------------------~~~l~--Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~  122 (195)
T PF02390_consen   63 ------------------KRGLK--NVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARV  122 (195)
T ss_dssp             ------------------HHTTS--SEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHH
T ss_pred             ------------------hhccc--ceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHH
Confidence                              56665  899999998873 2  3457899998755322111     1   16899999999


Q ss_pred             ccCCcEEEEEecCH---HHHHHHHHHC--CCceE
Q psy1420         195 LKPGGRFLCLEFSH---EEFKSMIESA--GFQYV  223 (241)
Q Consensus       195 LkpgG~l~i~~~~~---~~~~~~l~~~--Gf~~~  223 (241)
                      |+|||.+.+.+=..   +.+.+.+++.  +|...
T Consensus       123 L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen  123 LKPGGELYFATDVEEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             EEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred             cCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence            99999999876555   6666666663  67755

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.72  E-value=1.8e-08  Score=89.85  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=88.2

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC-
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP-  121 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~-  121 (241)
                      +..+|+..||+||...           |+..++  +.+.....         ....+++|+|+++.+++.|++...... 
T Consensus       115 ~~irIWSAgCStGEEp-----------YSlAml--l~e~~~~~---------~~~~~I~atDIs~~aL~~Ar~G~Y~~~~  172 (287)
T PRK10611        115 GEYRVWSAAASTGEEP-----------YSIAMT--LADTLGTA---------PGRWKVFASDIDTEVLEKARSGIYRQEE  172 (287)
T ss_pred             CCEEEEEccccCCHHH-----------HHHHHH--HHHhhccc---------CCCcEEEEEECCHHHHHHHHhCCCCHHH
Confidence            3479999999999987           545442  22211111         124579999999999999988654110 


Q ss_pred             Cccccccccceecce-----eeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccc--cHHHHHHHHHH
Q psy1420         122 IESDSYSAYTIAFGI-----RNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYR  193 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~--~~~~~l~~~~~  193 (241)
                      ...-+..+..-.|.-     .+.... +..+. ..+.|...|+...+++ .+.||+|+|.+++.++.  ...++++.+++
T Consensus       173 ~r~~p~~~~~ryF~~~~~~~~~~~~v-~~~lr-~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~  250 (287)
T PRK10611        173 LKTLSPQQLQRYFMRGTGPHEGLVRV-RQELA-NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVP  250 (287)
T ss_pred             HhcCCHHHHHHHcccccCCCCceEEE-ChHHH-ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHH
Confidence            000000011111110     011111 22233 4789999998875543 57899999999998885  46799999999


Q ss_pred             hccCCcEEEEEe
Q psy1420         194 VLKPGGRFLCLE  205 (241)
Q Consensus       194 ~LkpgG~l~i~~  205 (241)
                      .|+|||+|++..
T Consensus       251 ~L~pgG~L~lG~  262 (287)
T PRK10611        251 LLKPDGLLFAGH  262 (287)
T ss_pred             HhCCCcEEEEeC
Confidence            999999988743

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.71  E-value=2.2e-07  Score=86.51  Aligned_cols=124  Identities=16%  Similarity=0.195  Sum_probs=84.8

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|.++             ...+.                  ....+++++|.++.+++.+++++.    
T Consensus       220 ~g~rVLDlfsgtG~~~-------------l~aa~------------------~ga~~V~~VD~s~~al~~a~~N~~----  264 (396)
T PRK15128        220 ENKRVLNCFSYTGGFA-------------VSALM------------------GGCSQVVSVDTSQEALDIARQNVE----  264 (396)
T ss_pred             CCCeEEEeccCCCHHH-------------HHHHh------------------CCCCEEEEEECCHHHHHHHHHHHH----
Confidence            5679999999999987             32221                  023479999999999999999988    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEeeeehh--h-------ccccHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYTIAFGI--R-------NVTRIDKALS  189 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l--~-------~~~~~~~~l~  189 (241)
                                           ..++...+++++++|+.+.-    ...++||+|++.---  .       ...+....+.
T Consensus       265 ---------------------~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~  323 (396)
T PRK15128        265 ---------------------LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINM  323 (396)
T ss_pred             ---------------------HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHH
Confidence                                 55654236889999987641    124589999976221  0       1123455666


Q ss_pred             HHHHhccCCcEEEEEecCH----HHHHHHH----HHCCCce
Q psy1420         190 EAYRVLKPGGRFLCLEFSH----EEFKSMI----ESAGFQY  222 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~----~~~~~~l----~~~Gf~~  222 (241)
                      .+.++|+|||.++..+.+.    +.+.+++    .++|-+.
T Consensus       324 ~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~  364 (396)
T PRK15128        324 LAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_pred             HHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            7889999999998766543    4454444    4555443

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.67  E-value=1.5e-07  Score=83.20  Aligned_cols=141  Identities=13%  Similarity=0.016  Sum_probs=91.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC--
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL--  120 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--  120 (241)
                      ...+|+..||+||...           |+..++  +.+......        ....+++++|++...++.|+......  
T Consensus        96 ~~irIWSaaCStGEEp-----------YSiAm~--l~e~~~~~~--------~~~~~I~AtDId~~~L~~A~~G~Y~~~~  154 (268)
T COG1352          96 RPIRIWSAACSTGEEP-----------YSLAML--LLEALGKLA--------GFRVKILATDIDLSVLEKARAGIYPSRE  154 (268)
T ss_pred             CceEEEecCcCCCccH-----------HHHHHH--HHHHhcccc--------CCceEEEEEECCHHHHHHHhcCCCChhH
Confidence            3679999999999988           555542  222221110        13678999999999999998765510  


Q ss_pred             CCccccccc-cceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccC
Q psy1420         121 PIESDSYSA-YTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKP  197 (241)
Q Consensus       121 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkp  197 (241)
                      -...-+.++ +.+.....+..-..+..+. ..+.|.+.|....+...+.||+|+|-+++-.+..+  .++++..+..|+|
T Consensus       155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir-~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~  233 (268)
T COG1352         155 LLRGLPPELLRRYFERGGDGSYRVKEELR-KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP  233 (268)
T ss_pred             hhccCCHHHHhhhEeecCCCcEEEChHHh-cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC
Confidence            000111111 1222122111111122222 47889999988776456789999999999887654  6999999999999


Q ss_pred             CcEEEEEe
Q psy1420         198 GGRFLCLE  205 (241)
Q Consensus       198 gG~l~i~~  205 (241)
                      ||+|++-.
T Consensus       234 gG~LflG~  241 (268)
T COG1352         234 GGLLFLGH  241 (268)
T ss_pred             CCEEEEcc
Confidence            99999853

>TIGR00417 speE spermidine synthase

Probab=98.66  E-value=4e-07  Score=80.48  Aligned_cols=129  Identities=14%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +.+||++|||+|..+             ..++.    .             ....+++++|+++.+++.+++....+   
T Consensus        73 p~~VL~iG~G~G~~~-------------~~ll~----~-------------~~~~~v~~veid~~vi~~a~~~~~~~---  119 (270)
T TIGR00417        73 PKHVLVIGGGDGGVL-------------REVLK----H-------------KSVEKATLVDIDEKVIELSKKFLPSL---  119 (270)
T ss_pred             CCEEEEEcCCchHHH-------------HHHHh----C-------------CCcceEEEEeCCHHHHHHHHHHhHhh---
Confidence            449999999999877             44433    0             02457999999999999998876411   


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc--c--HHHHHHHHHHhccCC
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT--R--IDKALSEAYRVLKPG  198 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~--~--~~~~l~~~~~~Lkpg  198 (241)
                                          ......+++++...|.... ....++||+|++...-...+  .  ...+++.+.+.|+||
T Consensus       120 --------------------~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg  179 (270)
T TIGR00417       120 --------------------AGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNED  179 (270)
T ss_pred             --------------------cccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence                                0112224677777776442 22246899999865422111  1  357889999999999


Q ss_pred             cEEEEEecCH----H---HHHHHHHHCCCceEEEE
Q psy1420         199 GRFLCLEFSH----E---EFKSMIESAGFQYVTYE  226 (241)
Q Consensus       199 G~l~i~~~~~----~---~~~~~l~~~Gf~~~~~~  226 (241)
                      |.+++...+.    +   .+...+++. |..+...
T Consensus       180 G~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~  213 (270)
T TIGR00417       180 GIFVAQSESPWIQLELITDLKRDVKEA-FPITEYY  213 (270)
T ss_pred             cEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEE
Confidence            9998864332    3   333344455 6655443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1975|consensus

Probab=98.65  E-value=1.7e-07  Score=83.96  Aligned_cols=133  Identities=15%  Similarity=0.178  Sum_probs=91.9

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+++... +++..++++|||.|.-.             +.+-.                  ..-..++|+|+++..++.
T Consensus       108 s~LI~~y~-~~~~~~~~LgCGKGGDL-------------lKw~k------------------AgI~~~igiDIAevSI~q  155 (389)
T KOG1975|consen  108 SVLINLYT-KRGDDVLDLGCGKGGDL-------------LKWDK------------------AGIGEYIGIDIAEVSINQ  155 (389)
T ss_pred             HHHHHHHh-ccccccceeccCCcccH-------------hHhhh------------------hcccceEeeehhhccHHH
Confidence            33444433 56778999999999876             44432                  135689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC------CCCCCceeEEeeeehhhc-cc---
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRN-VT---  182 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~V~~~~~l~~-~~---  182 (241)
                      |+++...+.                +-+.  +.-+   ...|+.+|-...      +..+.+||+|-|.+++|. +.   
T Consensus       156 a~~RYrdm~----------------~r~~--~~~f---~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee  214 (389)
T KOG1975|consen  156 ARKRYRDMK----------------NRFK--KFIF---TAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEE  214 (389)
T ss_pred             HHHHHHHHH----------------hhhh--cccc---eeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHH
Confidence            998876321                1111  1111   356777774432      222334999999999985 44   


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHC
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESA  218 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~  218 (241)
                      ....+|.++.++|+|||+++-.......+..-+++.
T Consensus       215 ~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  215 SARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             HHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence            346889999999999999998877777776666665

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.64  E-value=2.8e-07  Score=83.18  Aligned_cols=133  Identities=9%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+.+.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.+
T Consensus       164 ~v~~~l~~~~~~~VLDl~cG~G~~s-------------l~la~-------------------~~~~V~gvD~s~~av~~A  211 (315)
T PRK03522        164 TARDWVRELPPRSMWDLFCGVGGFG-------------LHCAT-------------------PGMQLTGIEISAEAIACA  211 (315)
T ss_pred             HHHHHHHhcCCCEEEEccCCCCHHH-------------HHHHh-------------------cCCEEEEEeCCHHHHHHH
Confidence            3334444345679999999999988             44433                   346899999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      ++++.                         ..++.  ++++.++|+..... ..+.||+|++.--- .  ...+.+..+.
T Consensus       212 ~~n~~-------------------------~~~l~--~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr-~--G~~~~~~~~l  261 (315)
T PRK03522        212 KQSAA-------------------------ELGLT--NVQFQALDSTQFATAQGEVPDLVLVNPPR-R--GIGKELCDYL  261 (315)
T ss_pred             HHHHH-------------------------HcCCC--ceEEEEcCHHHHHHhcCCCCeEEEECCCC-C--CccHHHHHHH
Confidence            99987                         55553  68899999876532 23479999975221 0  1112222333


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      ..++|++.++++.-..   ++++.+   .||++.++..+.+-
T Consensus       262 ~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmF  300 (315)
T PRK03522        262 SQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMF  300 (315)
T ss_pred             HHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccC
Confidence            3467888777754333   555554   68999888877543

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.63  E-value=1.7e-07  Score=78.02  Aligned_cols=150  Identities=21%  Similarity=0.226  Sum_probs=96.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .....|+....++++..++|.-||+|+..             ...+-     +.....+ .+  ......++|.|+++.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtil-------------iEaa~-----~~~~~~~-~~--~~~~~~~~g~Di~~~~   73 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTIL-------------IEAAL-----MGANIPP-LN--DINELKIIGSDIDPKA   73 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHH-------------HHHHH-----HHTTTST-TT--H-CH--EEEEESSHHH
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHH-------------HHHHH-----HhhCccc-cc--ccccccEEecCCCHHH
Confidence            34556677777888999999999999987             43322     1111000 00  0001238899999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee--ehhhccc-----
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA--FGIRNVT-----  182 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~--~~l~~~~-----  182 (241)
                      ++.++.++.                         ..++. ..+.+...|+..++...+++|.|+++  ++.+.-.     
T Consensus        74 v~~a~~N~~-------------------------~ag~~-~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~  127 (179)
T PF01170_consen   74 VRGARENLK-------------------------AAGVE-DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLE  127 (179)
T ss_dssp             HHHHHHHHH-------------------------HTT-C-GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHH
T ss_pred             HHHHHHHHH-------------------------hcccC-CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHH
Confidence            999999998                         66665 56889999999998667899999987  3443211     


Q ss_pred             -cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         183 -RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       183 -~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                       -...+++++.+++++  +.+++......+.+.+...+++.....+.
T Consensus       128 ~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~  172 (179)
T PF01170_consen  128 KLYRQFLRELKRVLKP--RAVFLTTSNRELEKALGLKGWRKRKLYNG  172 (179)
T ss_dssp             HHHHHHHHHHHCHSTT--CEEEEEESCCCHHHHHTSTTSEEEEEEET
T ss_pred             HHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHhcchhhceEEEEEe
Confidence             125778889999998  33333445567888888887776655544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.60  E-value=4.3e-07  Score=85.22  Aligned_cols=137  Identities=13%  Similarity=0.123  Sum_probs=92.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.+++
T Consensus       281 ~~~~~~~l~~~~~~~vLDl~cG~G~~s-------------l~la~-------------------~~~~V~~vE~~~~av~  328 (431)
T TIGR00479       281 VDRALEALELQGEELVVDAYCGVGTFT-------------LPLAK-------------------QAKSVVGIEVVPESVE  328 (431)
T ss_pred             HHHHHHHhccCCCCEEEEcCCCcCHHH-------------HHHHH-------------------hCCEEEEEEcCHHHHH
Confidence            345556666667789999999999998             44333                   2457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKA  187 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~~~~  187 (241)
                      .+++++.                         ..++.  +++++.+|+.+.    +...++||+|++.-.=.  .-...+
T Consensus       329 ~a~~n~~-------------------------~~~~~--nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~  379 (431)
T TIGR00479       329 KAQQNAE-------------------------LNGIA--NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK--GCAAEV  379 (431)
T ss_pred             HHHHHHH-------------------------HhCCC--ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC--CCCHHH
Confidence            9999987                         44544  688999998652    12345799998632210  112455


Q ss_pred             HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      ++.+.+ ++|++.++++ ..+   ..-...+.+.||++.++..+.+-
T Consensus       380 l~~l~~-l~~~~ivyvs-c~p~tlard~~~l~~~gy~~~~~~~~DmF  424 (431)
T TIGR00479       380 LRTIIE-LKPERIVYVS-CNPATLARDLEFLCKEGYGITWVQPVDMF  424 (431)
T ss_pred             HHHHHh-cCCCEEEEEc-CCHHHHHHHHHHHHHCCeeEEEEEEeccC
Confidence            555544 7898877764 333   22244567789998888876543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.59  E-value=5e-07  Score=79.31  Aligned_cols=126  Identities=14%  Similarity=0.188  Sum_probs=85.6

Q ss_pred             cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeecccc-------CCCCCCe-eEEecccCCCC-CCC
Q psy1420          96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-------DIPNPRL-RFLEANAEELP-IES  166 (241)
Q Consensus        96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~d~~~~~-~~~  166 (241)
                      ....++..|+++.+.+..++.+..   + +.|.|.++..-+..+ .+...       .+. ..+ +++.+|+...+ +..
T Consensus        78 ~f~~I~l~dy~~~N~~el~kWl~~---~-~a~DWs~~~~~v~~l-Eg~~~~~~e~e~~lR-~~Vk~Vv~cDV~~~~pl~~  151 (256)
T PF01234_consen   78 WFEEIVLSDYSEQNREELEKWLRK---E-GAFDWSPFWKYVCEL-EGKREKWEEKEEKLR-RAVKQVVPCDVTQPNPLDP  151 (256)
T ss_dssp             TEEEEEEEESSHHHHHHHHHHHTT-----TS--THHHHHHHHHH-TTSSSGHHHHHHHHH-HHEEEEEE--TTSSSTTTT
T ss_pred             hhcceEEeeccHhhHHHHHHHHCC---C-CCCCccHHHHHHHhc-cCCcchhhhHHHHHH-HhhceEEEeeccCCCCCCc
Confidence            355799999999999999999872   2 666676665433211 11100       000 112 36778876653 322


Q ss_pred             -----CceeEEeeeehhhcc----ccHHHHHHHHHHhccCCcEEEEEecCH------------------HHHHHHHHHCC
Q psy1420         167 -----DSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGGRFLCLEFSH------------------EEFKSMIESAG  219 (241)
Q Consensus       167 -----~~~D~V~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------~~~~~~l~~~G  219 (241)
                           .++|+|++.+++...    .....+++++.++|||||.|++...-.                  +.+++.++++|
T Consensus       152 ~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG  231 (256)
T PF01234_consen  152 PVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG  231 (256)
T ss_dssp             S-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT
T ss_pred             cccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC
Confidence                 359999999999753    345799999999999999999865322                  88999999999


Q ss_pred             CceEEEEE
Q psy1420         220 FQYVTYEN  227 (241)
Q Consensus       220 f~~~~~~~  227 (241)
                      |.+.+.+.
T Consensus       232 ~~i~~~~~  239 (256)
T PF01234_consen  232 FDIEDLEK  239 (256)
T ss_dssp             EEEEEEEG
T ss_pred             CEEEeccc
Confidence            99998885

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PLN02366 spermidine synthase

Probab=98.55  E-value=1.5e-06  Score=78.46  Aligned_cols=131  Identities=16%  Similarity=0.178  Sum_probs=85.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+||++|||.|..+             ..++.        .+         ...+++.+|+++.+++.+++..... 
T Consensus        90 ~~pkrVLiIGgG~G~~~-------------rellk--------~~---------~v~~V~~VEiD~~Vi~~ar~~f~~~-  138 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVL-------------REIAR--------HS---------SVEQIDICEIDKMVIDVSKKFFPDL-  138 (308)
T ss_pred             CCCCeEEEEcCCccHHH-------------HHHHh--------CC---------CCCeEEEEECCHHHHHHHHHhhhhh-
Confidence            34568999999999987             44433        10         2467999999999999999876511 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhcccc----HHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTR----IDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~L  195 (241)
                                            ..++.+++++++.+|+... . .+.++||+|++...-...+.    -..+++.+.++|
T Consensus       139 ----------------------~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L  196 (308)
T PLN02366        139 ----------------------AVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARAL  196 (308)
T ss_pred             ----------------------ccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhc
Confidence                                  1123346899999996542 1 22468999997543322221    247899999999


Q ss_pred             cCCcEEEEEecC----H---HHHHHHHHHCCCceEEE
Q psy1420         196 KPGGRFLCLEFS----H---EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       196 kpgG~l~i~~~~----~---~~~~~~l~~~Gf~~~~~  225 (241)
                      +|||.++...-+    .   ..+.+.+++.....+..
T Consensus       197 ~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~  233 (308)
T PLN02366        197 RPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNY  233 (308)
T ss_pred             CCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeE
Confidence            999999763322    2   34445555553345544

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.54  E-value=1.4e-06  Score=74.36  Aligned_cols=76  Identities=24%  Similarity=0.401  Sum_probs=64.0

Q ss_pred             eEEecccCCCCCC---CCceeEEeeeehhhccccHH---HHHHHHHHhccCCcE-----EEEEecCH----------HHH
Q psy1420         153 RFLEANAEELPIE---SDSYSAYTIAFGIRNVTRID---KALSEAYRVLKPGGR-----FLCLEFSH----------EEF  211 (241)
Q Consensus       153 ~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~---~~l~~~~~~LkpgG~-----l~i~~~~~----------~~~  211 (241)
                      .+.+.|+.+.|.+   +++||+|.++.+|..++++.   ..+..+++.|+|+|.     |+++....          +.|
T Consensus        86 ~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l  165 (219)
T PF11968_consen   86 GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERL  165 (219)
T ss_pred             CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHH
Confidence            4567888877654   67999999999999999875   889999999999999     88765444          899


Q ss_pred             HHHHHHCCCceEEEEEe
Q psy1420         212 KSMIESAGFQYVTYENL  228 (241)
Q Consensus       212 ~~~l~~~Gf~~~~~~~~  228 (241)
                      ..++++.||..++.+..
T Consensus       166 ~~im~~LGf~~~~~~~~  182 (219)
T PF11968_consen  166 REIMESLGFTRVKYKKS  182 (219)
T ss_pred             HHHHHhCCcEEEEEEec
Confidence            99999999998887654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.53  E-value=2.3e-07  Score=87.65  Aligned_cols=140  Identities=19%  Similarity=0.274  Sum_probs=88.4

Q ss_pred             cchHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCC----CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhh
Q psy1420           2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPT----HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPV   77 (241)
Q Consensus         2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~   77 (241)
                      .+..+++|+.=.-+|+...+++.        +.+.+.....    ++..|+|+|||+|-++             ...+..
T Consensus       149 ~s~tYe~fE~D~vKY~~Ye~AI~--------~al~D~~~~~~~~~~~~vVldVGAGrGpL~-------------~~al~A  207 (448)
T PF05185_consen  149 ESQTYEVFEKDPVKYDQYERAIE--------EALKDRVRKNSYSSKDKVVLDVGAGRGPLS-------------MFALQA  207 (448)
T ss_dssp             -HHHHHHHCC-HHHHHHHHHHHH--------HHHHHHHTTS-SEETT-EEEEES-TTSHHH-------------HHHHHT
T ss_pred             ccccHhhHhcCHHHHHHHHHHHH--------HHHHhhhhhccccccceEEEEeCCCccHHH-------------HHHHHH
Confidence            34677788777777777654432        2233333322    4678999999999987             333331


Q ss_pred             hhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec
Q psy1420          78 MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA  157 (241)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (241)
                      .++.             ....+++++|.++.+...+++.+.                         ..++. ++++++.+
T Consensus       208 ~~~~-------------~~a~~VyAVEkn~~A~~~l~~~v~-------------------------~n~w~-~~V~vi~~  248 (448)
T PF05185_consen  208 GARA-------------GGAVKVYAVEKNPNAVVTLQKRVN-------------------------ANGWG-DKVTVIHG  248 (448)
T ss_dssp             THHH-------------CCESEEEEEESSTHHHHHHHHHHH-------------------------HTTTT-TTEEEEES
T ss_pred             HHHh-------------CCCeEEEEEcCCHhHHHHHHHHHH-------------------------hcCCC-CeEEEEeC
Confidence            1110             024689999999998888776655                         55665 68999999


Q ss_pred             ccCCCCCCCCceeEEeeeeh--hhccccHHHHHHHHHHhccCCcEEE
Q psy1420         158 NAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       158 d~~~~~~~~~~~D~V~~~~~--l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                      |+++...+ .++|+|++=..  +-.-+-....|....|.|||||.++
T Consensus       249 d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  249 DMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            99998765 48999996321  1111233457888899999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2899|consensus

Probab=98.52  E-value=7.6e-07  Score=77.01  Aligned_cols=129  Identities=12%  Similarity=0.069  Sum_probs=78.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC-
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL-  120 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-  120 (241)
                      ..+..+|||||-.|..+             .+++..+|                 ...+.|+|+++..++.|++.++.- 
T Consensus        57 f~~~~~LDIGCNsG~lt-------------~~iak~F~-----------------~r~iLGvDID~~LI~~Ark~~r~~~  106 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLT-------------LSIAKDFG-----------------PRRILGVDIDPVLIQRARKEIRFPC  106 (288)
T ss_pred             cCcceeEeccCCcchhH-------------HHHHHhhc-----------------cceeeEeeccHHHHHHHHHhccccc
Confidence            45668999999999999             55555222                 346999999999999999886610 


Q ss_pred             ---------CCccccccccceecceeeeeeccccCCC------CCCeeEEecccCCCCCCCCceeEEeeeehhhc----c
Q psy1420         121 ---------PIESDSYSAYTIAFGIRNVTRIDKIDIP------NPRLRFLEANAEELPIESDSYSAYTIAFGIRN----V  181 (241)
Q Consensus       121 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~----~  181 (241)
                               .+.++.+...+|+. -...+......++      ..+..+...|+..  .....||+|+|-.+--+    +
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNw  183 (288)
T KOG2899|consen  107 DHETEVSGKFPASFGVQFGPISQ-RNEADRAFTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNW  183 (288)
T ss_pred             cccccccCCCccccccccccccc-cccccccccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEeccc
Confidence                     01122223444444 1111111111222      0122222222332  23457999998654332    2


Q ss_pred             cc--HHHHHHHHHHhccCCcEEEE
Q psy1420         182 TR--IDKALSEAYRVLKPGGRFLC  203 (241)
Q Consensus       182 ~~--~~~~l~~~~~~LkpgG~l~i  203 (241)
                      .|  +..+++.++++|.|||+|++
T Consensus       184 gD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  184 GDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             ccHHHHHHHHHHHHhhCcCcEEEE
Confidence            22  57999999999999999987

>PLN02672 methionine S-methyltransferase

Probab=98.51  E-value=1e-06  Score=90.45  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +.+|||+|||+|..+             ..++.        .         ....+++++|+|+.+++.++.++..+-..
T Consensus       119 ~~~VLDlG~GSG~Ia-------------i~La~--------~---------~~~~~v~avDis~~Al~~A~~Na~~n~l~  168 (1082)
T PLN02672        119 DKTVAELGCGNGWIS-------------IAIAE--------K---------WLPSKVYGLDINPRAVKVAWINLYLNALD  168 (1082)
T ss_pred             CCEEEEEecchHHHH-------------HHHHH--------H---------CCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence            458999999999988             43333        0         02458999999999999999998721000


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeee--hhh--------cc-----------
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAF--GIR--------NV-----------  181 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~--~l~--------~~-----------  181 (241)
                      .+         +...... .+.... .+++++++|+.+.... ..+||+|+++-  +..        .+           
T Consensus       169 ~~---------~~~~~~~-~~~~l~-~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~  237 (1082)
T PLN02672        169 DD---------GLPVYDG-EGKTLL-DRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYS  237 (1082)
T ss_pred             cc---------ccccccc-cccccc-ccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccc
Confidence            00         0000000 000111 3688889987654311 13699999762  110        00           


Q ss_pred             -------------c----cHHHHHHHHHHhccCCcEEEEEecCH---HHHH-HHHHHCCCceEEEEE
Q psy1420         182 -------------T----RIDKALSEAYRVLKPGGRFLCLEFSH---EEFK-SMIESAGFQYVTYEN  227 (241)
Q Consensus       182 -------------~----~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~-~~l~~~Gf~~~~~~~  227 (241)
                                   .    -+.+++.++.++|+|||.+++ +.+.   +.+. +++++.||..++.-.
T Consensus       238 ~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~~gf~~~~~~~  303 (1082)
T PLN02672        238 LSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFERRGFRITKLWQ  303 (1082)
T ss_pred             cCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHHCCCCeeEEee
Confidence                         0    125778888899999998876 4443   6777 699999998865543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.50  E-value=1.3e-06  Score=79.27  Aligned_cols=138  Identities=22%  Similarity=0.257  Sum_probs=103.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+.++...++|..|||-=||||...             +..--                   -+..++|.|++..|
T Consensus       184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiL-------------iEagl-------------------~G~~viG~Did~~m  231 (347)
T COG1041         184 RLARAMVNLARVKRGELVLDPFCGTGGIL-------------IEAGL-------------------MGARVIGSDIDERM  231 (347)
T ss_pred             HHHHHHHHHhccccCCEeecCcCCccHHH-------------Hhhhh-------------------cCceEeecchHHHH
Confidence            34566777777789999999999999987             33322                   46789999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccCCCCCCCCceeEEeee--ehhhc---ccc
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAEELPIESDSYSAYTIA--FGIRN---VTR  183 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~V~~~--~~l~~---~~~  183 (241)
                      ++-++.+++                         .-++.  ...+... |+..+|+++.++|.|++-  ++...   ...
T Consensus       232 v~gak~Nl~-------------------------~y~i~--~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~  284 (347)
T COG1041         232 VRGAKINLE-------------------------YYGIE--DYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEG  284 (347)
T ss_pred             Hhhhhhhhh-------------------------hhCcC--ceeEEEecccccCCCCCCccceEEecCCCCccccccccc
Confidence            999999988                         33333  3434444 999999887789999974  22221   111


Q ss_pred             ----HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         184 ----IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       184 ----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                          ..++|+.++++||+||++++...  ......+++.||.++.....
T Consensus       285 l~~Ly~~~le~~~evLk~gG~~vf~~p--~~~~~~~~~~~f~v~~~~~~  331 (347)
T COG1041         285 LDELYEEALESASEVLKPGGRIVFAAP--RDPRHELEELGFKVLGRFTM  331 (347)
T ss_pred             HHHHHHHHHHHHHHHhhcCcEEEEecC--CcchhhHhhcCceEEEEEEE
Confidence                46899999999999999888655  45567788999998765544

>PLN02476 O-methyltransferase

Probab=98.49  E-value=7.4e-07  Score=79.16  Aligned_cols=105  Identities=12%  Similarity=0.075  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..+..+|||+|+++|..+             ..++..++                ....++++|.++...+.|+++++  
T Consensus       116 ~~~ak~VLEIGT~tGySa-------------l~lA~al~----------------~~G~V~TiE~d~e~~~~Ar~n~~--  164 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSS-------------LAVALVLP----------------ESGCLVACERDSNSLEVAKRYYE--  164 (278)
T ss_pred             hcCCCeEEEecCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH--
Confidence            345679999999999988             43433111                24579999999999999999998  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                                             +.++. ++++++.+|+.+. + .    ..++||+|+.-..   -......++.+.++
T Consensus       165 -----------------------~aGl~-~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~l  217 (278)
T PLN02476        165 -----------------------LAGVS-HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQL  217 (278)
T ss_pred             -----------------------HcCCC-CcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC---HHHHHHHHHHHHHh
Confidence                                   77877 6899999997653 2 1    1358999997432   23467888889999


Q ss_pred             ccCCcEEEE
Q psy1420         195 LKPGGRFLC  203 (241)
Q Consensus       195 LkpgG~l~i  203 (241)
                      |+|||.+++
T Consensus       218 L~~GGvIV~  226 (278)
T PLN02476        218 VRVGGVIVM  226 (278)
T ss_pred             cCCCcEEEE
Confidence            999999887

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.49  E-value=2.4e-07  Score=78.94  Aligned_cols=105  Identities=19%  Similarity=0.241  Sum_probs=79.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      +..+|||+||++|+.+             ..++..++                ...+++.+|.++...+.|++.+.    
T Consensus        45 ~~k~vLEIGt~~GySa-------------l~la~~l~----------------~~g~i~tiE~~~~~~~~A~~~~~----   91 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSA-------------LWLAEALP----------------EDGKITTIEIDPERAEIARENFR----   91 (205)
T ss_dssp             T-SEEEEESTTTSHHH-------------HHHHHTST----------------TTSEEEEEESSHHHHHHHHHHHH----
T ss_pred             CCceEEEeccccccHH-------------HHHHHhhc----------------ccceEEEecCcHHHHHHHHHHHH----
Confidence            4459999999999988             43433111                36789999999999999999988    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk  196 (241)
                                           +.++. .+++++.+|+.+. +     ...++||+|+.-..   -.+....++.+.++|+
T Consensus        92 ---------------------~ag~~-~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~  146 (205)
T PF01596_consen   92 ---------------------KAGLD-DRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLR  146 (205)
T ss_dssp             ---------------------HTTGG-GGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEE
T ss_pred             ---------------------hcCCC-CcEEEEEeccHhhHHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhcc
Confidence                                 77775 6899999997653 1     12358999997543   2456678888889999


Q ss_pred             CCcEEEEEe
Q psy1420         197 PGGRFLCLE  205 (241)
Q Consensus       197 pgG~l~i~~  205 (241)
                      |||.+++-.
T Consensus       147 ~ggvii~DN  155 (205)
T PF01596_consen  147 PGGVIIADN  155 (205)
T ss_dssp             EEEEEEEET
T ss_pred             CCeEEEEcc
Confidence            999998743

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.48  E-value=5.4e-07  Score=77.32  Aligned_cols=107  Identities=15%  Similarity=0.205  Sum_probs=80.8

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +...+..+|||+|++.|+.+             ..++..+.                ...+++.+|.++.+.+.|+++..
T Consensus        55 ~~~~~~k~iLEiGT~~GySa-------------l~mA~~l~----------------~~g~l~tiE~~~e~~~~A~~n~~  105 (219)
T COG4122          55 ARLSGPKRILEIGTAIGYSA-------------LWMALALP----------------DDGRLTTIERDEERAEIARENLA  105 (219)
T ss_pred             HHhcCCceEEEeecccCHHH-------------HHHHhhCC----------------CCCeEEEEeCCHHHHHHHHHHHH
Confidence            33456779999999999988             33333111                25689999999999999999999


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEe-cccCCC-C-CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE-ANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                               +.++. +++..+. +|..+. . ...++||+|+.-..   -.+...+++.+.++|
T Consensus       106 -------------------------~ag~~-~~i~~~~~gdal~~l~~~~~~~fDliFIDad---K~~yp~~le~~~~lL  156 (219)
T COG4122         106 -------------------------EAGVD-DRIELLLGGDALDVLSRLLDGSFDLVFIDAD---KADYPEYLERALPLL  156 (219)
T ss_pred             -------------------------HcCCc-ceEEEEecCcHHHHHHhccCCCccEEEEeCC---hhhCHHHHHHHHHHh
Confidence                                     88887 5677877 464443 2 34689999996322   235678999999999


Q ss_pred             cCCcEEEE
Q psy1420         196 KPGGRFLC  203 (241)
Q Consensus       196 kpgG~l~i  203 (241)
                      +|||.+++
T Consensus       157 r~GGliv~  164 (219)
T COG4122         157 RPGGLIVA  164 (219)
T ss_pred             CCCcEEEE
Confidence            99999987

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.47  E-value=6e-07  Score=74.30  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..++.    +             .....++.+|.++ .++.++.++.  
T Consensus        43 ~~~~~~VLELGaG~Gl~g-------------i~~a~----~-------------~~~~~Vv~TD~~~-~l~~l~~Ni~--   89 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPG-------------IAAAK----L-------------FGAARVVLTDYNE-VLELLRRNIE--   89 (173)
T ss_dssp             GTTTSEEEETT-TTSHHH-------------HHHHH----T--------------T-SEEEEEE-S--HHHHHHHHHH--
T ss_pred             hcCCceEEEECCccchhH-------------HHHHh----c-------------cCCceEEEeccch-hhHHHHHHHH--
Confidence            356779999999999877             32222    1             0256799999999 8888888887  


Q ss_pred             CCccccccccceecceeeeeeccccC-CCCCCeeEEecccCCCC----CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                             ..+ ....++.+...+..+..    ....+||+|+.+-++++-.....+++.+.++|
T Consensus        90 -----------------------~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll  146 (173)
T PF10294_consen   90 -----------------------LNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLL  146 (173)
T ss_dssp             -----------------------TT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHB
T ss_pred             -----------------------hccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHh
Confidence                                   222 11135666666654421    23468999999999998888899999999999


Q ss_pred             cCCcEEEEEe
Q psy1420         196 KPGGRFLCLE  205 (241)
Q Consensus       196 kpgG~l~i~~  205 (241)
                      +|+|.+++..
T Consensus       147 ~~~~~vl~~~  156 (173)
T PF10294_consen  147 KPNGKVLLAY  156 (173)
T ss_dssp             TT-TTEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999866654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3178|consensus

Probab=98.46  E-value=2.4e-06  Score=77.35  Aligned_cols=118  Identities=17%  Similarity=0.238  Sum_probs=89.0

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      ...+|+|+|.|..+             ..++.                   ...++-+++.....+..+.....      
T Consensus       179 ~~avDvGgGiG~v~-------------k~ll~-------------------~fp~ik~infdlp~v~~~a~~~~------  220 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVL-------------KNLLS-------------------KYPHIKGINFDLPFVLAAAPYLA------  220 (342)
T ss_pred             ceEEEcCCcHhHHH-------------HHHHH-------------------hCCCCceeecCHHHHHhhhhhhc------
Confidence            57899999999988             44433                   24468888888777766554441      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcEEE
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~  202 (241)
                                               +.++.+.+|.... .|.  -|+|++.+++|+++|-  .++|++++..|+|||.++
T Consensus       221 -------------------------~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIi  272 (342)
T KOG3178|consen  221 -------------------------PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKII  272 (342)
T ss_pred             -------------------------CCcceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEE
Confidence                                     1356667775554 333  3699999999999875  599999999999999999


Q ss_pred             EEecCH---------------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         203 CLEFSH---------------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       203 i~~~~~---------------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.+.-.                                 ++++..+.++||....+...
T Consensus       273 v~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  273 VVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT  331 (342)
T ss_pred             EEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence            987411                                 88899999999988776654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.45  E-value=2.5e-06  Score=78.87  Aligned_cols=131  Identities=9%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      .+.+...++.+|||++||+|..+             ..++.                   ....++++|+++.+++.+++
T Consensus       226 ~~~l~~~~~~~vLDL~cG~G~~~-------------l~la~-------------------~~~~v~~vE~~~~av~~a~~  273 (374)
T TIGR02085       226 RQWVREIPVTQMWDLFCGVGGFG-------------LHCAG-------------------PDTQLTGIEIESEAIACAQQ  273 (374)
T ss_pred             HHHHHhcCCCEEEEccCCccHHH-------------HHHhh-------------------cCCeEEEEECCHHHHHHHHH
Confidence            33333345678999999999988             33332                   34679999999999999999


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                      ++.                         ..++.  ++++..+|+.... ....+||+|++.---.  .-..++++.+. .
T Consensus       274 N~~-------------------------~~~~~--~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~  323 (374)
T TIGR02085       274 SAQ-------------------------MLGLD--NLSFAALDSAKFATAQMSAPELVLVNPPRR--GIGKELCDYLS-Q  323 (374)
T ss_pred             HHH-------------------------HcCCC--cEEEEECCHHHHHHhcCCCCCEEEECCCCC--CCcHHHHHHHH-h
Confidence            987                         55553  6889999986532 1124599988642211  11134445554 3


Q ss_pred             ccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420         195 LKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       195 LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      ++|++.++++--..   +++..+   .||++.++..+.+-
T Consensus       324 ~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~~DmF  360 (374)
T TIGR02085       324 MAPKFILYSSCNAQTMAKDIAEL---SGYQIERVQLFDMF  360 (374)
T ss_pred             cCCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEEeccC
Confidence            78988888754333   555555   79999988877543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.44  E-value=2.1e-06  Score=72.84  Aligned_cols=136  Identities=12%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             HHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          31 WKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        31 ~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .++.++..+.. .++.+|||+|||+|..+             ..++.       .           ...+++++|.++.+
T Consensus        40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~-------------l~~ls-------r-----------~a~~V~~vE~~~~a   88 (199)
T PRK10909         40 VRETLFNWLAPVIVDARCLDCFAGSGALG-------------LEALS-------R-----------YAAGATLLEMDRAV   88 (199)
T ss_pred             HHHHHHHHHhhhcCCCEEEEcCCCccHHH-------------HHHHH-------c-----------CCCEEEEEECCHHH
Confidence            34445555432 45679999999999988             32211       1           23579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      ++.+++++.                         ..++.  ++++++.|+... +....+||+|++.--.+. .-...++
T Consensus        89 ~~~a~~Nl~-------------------------~~~~~--~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l  140 (199)
T PRK10909         89 AQQLIKNLA-------------------------TLKAG--NARVVNTNALSFLAQPGTPHNVVFVDPPFRK-GLLEETI  140 (199)
T ss_pred             HHHHHHHHH-------------------------HhCCC--cEEEEEchHHHHHhhcCCCceEEEECCCCCC-ChHHHHH
Confidence            999999987                         44443  578888887652 222346999998654321 2234555


Q ss_pred             HHHHH--hccCCcEEEEEecCHHHHHHHHHHCCCceEEEEE
Q psy1420         189 SEAYR--VLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       189 ~~~~~--~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      +.+..  .++|+|.+++.......+.+.  ..+|...+..+
T Consensus       141 ~~l~~~~~l~~~~iv~ve~~~~~~~~~~--~~~~~~~~~k~  179 (199)
T PRK10909        141 NLLEDNGWLADEALIYVESEVENGLPTV--PANWQLHREKV  179 (199)
T ss_pred             HHHHHCCCcCCCcEEEEEecCCCCcccC--CCccEEEEEec
Confidence            55554  478999888764433333221  23566554443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.41  E-value=5e-06  Score=69.70  Aligned_cols=121  Identities=24%  Similarity=0.386  Sum_probs=89.6

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      +++|+|+|.|--.             ..+    +..   .          +..+++.+|....-..+.+....       
T Consensus        51 ~~lDiGSGaGfPG-------------ipL----aI~---~----------p~~~~~LvEs~~KK~~FL~~~~~-------   93 (184)
T PF02527_consen   51 KVLDIGSGAGFPG-------------IPL----AIA---R----------PDLQVTLVESVGKKVAFLKEVVR-------   93 (184)
T ss_dssp             EEEEETSTTTTTH-------------HHH----HHH--------------TTSEEEEEESSHHHHHHHHHHHH-------
T ss_pred             eEEecCCCCCChh-------------HHH----HHh---C----------CCCcEEEEeCCchHHHHHHHHHH-------
Confidence            8999999999887             222    111   1          45679999999999999888877       


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                                        ..+++  ++++++..+++ +....+||+|++    +.+.+....++.+...+++||.+++.-
T Consensus        94 ------------------~L~L~--nv~v~~~R~E~-~~~~~~fd~v~a----RAv~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen   94 ------------------ELGLS--NVEVINGRAEE-PEYRESFDVVTA----RAVAPLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             ------------------HHT-S--SEEEEES-HHH-TTTTT-EEEEEE----ESSSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ------------------HhCCC--CEEEEEeeecc-cccCCCccEEEe----ehhcCHHHHHHHHHHhcCCCCEEEEEc
Confidence                              56666  79999999998 444678999998    777888999999999999999998875


Q ss_pred             cCH-----HHHHHHHHHCCCceEEEEEe
Q psy1420         206 FSH-----EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       206 ~~~-----~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      =..     ++.+..++..|.+...+...
T Consensus       149 G~~~~~El~~~~~~~~~~~~~~~~v~~~  176 (184)
T PF02527_consen  149 GPDAEEELEEAKKAWKKLGLKVLSVPEF  176 (184)
T ss_dssp             SS--HHHHHTHHHHHHCCCEEEEEEEEE
T ss_pred             CCChHHHHHHHHhHHHHhCCEEeeeccc
Confidence            332     44555666666666666554

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG3191|consensus

Probab=98.40  E-value=8e-06  Score=67.92  Aligned_cols=127  Identities=14%  Similarity=0.183  Sum_probs=84.4

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      ..-++|+|||+|..+             ..+...++                +...+.++|++|.+.+.....+.     
T Consensus        44 ~~i~lEIG~GSGvvs-------------tfL~~~i~----------------~~~~~latDiNp~A~~~Tl~TA~-----   89 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVS-------------TFLASVIG----------------PQALYLATDINPEALEATLETAR-----   89 (209)
T ss_pred             ceeEEEecCCcchHH-------------HHHHHhcC----------------CCceEEEecCCHHHHHHHHHHHH-----
Confidence            557999999999988             33333111                45679999999999999887776     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh----------hc-----------cc
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI----------RN-----------VT  182 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l----------~~-----------~~  182 (241)
                                          ..+.   ++..++.|+... +..+++|+++.+-..          ++           ..
T Consensus        90 --------------------~n~~---~~~~V~tdl~~~-l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~  145 (209)
T KOG3191|consen   90 --------------------CNRV---HIDVVRTDLLSG-LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGRE  145 (209)
T ss_pred             --------------------hcCC---ccceeehhHHhh-hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHH
Confidence                                2221   255566665442 223566666643110          00           11


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      -.++++..+-.+|.|.|.+++.....   +++-.++++.||........
T Consensus       146 v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~R  194 (209)
T KOG3191|consen  146 VTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQR  194 (209)
T ss_pred             HHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEE
Confidence            24677778888999999999875444   88888999999986554433

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=6e-06  Score=69.07  Aligned_cols=133  Identities=18%  Similarity=0.203  Sum_probs=87.4

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      +.-.+.+|+|+|||||.++             ....-      .            ....++++|+++.+++.+++++. 
T Consensus        42 g~l~g~~V~DlG~GTG~La-------------~ga~~------l------------Ga~~V~~vdiD~~a~ei~r~N~~-   89 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILA-------------IGAAL------L------------GASRVLAVDIDPEALEIARANAE-   89 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHH-------------HHHHh------c------------CCcEEEEEecCHHHHHHHHHHHH-
Confidence            4456778999999999988             32221      1            24689999999999999999998 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee--ehhhccccHHHHHHHHHHhccC
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA--FGIRNVTRIDKALSEAYRVLKP  197 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~--~~l~~~~~~~~~l~~~~~~Lkp  197 (241)
                                              +  +. +++.+.++|+....   .++|.++.+  |+...-..-..++..+.+..+ 
T Consensus        90 ------------------------~--l~-g~v~f~~~dv~~~~---~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~-  138 (198)
T COG2263          90 ------------------------E--LL-GDVEFVVADVSDFR---GKFDTVIMNPPFGSQRRHADRPFLLKALEISD-  138 (198)
T ss_pred             ------------------------h--hC-CceEEEEcchhhcC---CccceEEECCCCccccccCCHHHHHHHHHhhh-
Confidence                                    4  22 57999999999874   568888876  343311111234444433321 


Q ss_pred             CcEEEEE--ecCHHHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420         198 GGRFLCL--EFSHEEFKSMIESAGFQYVTYENLTFGVVAIHS  237 (241)
Q Consensus       198 gG~l~i~--~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  237 (241)
                        .++-.  .-+.+-++...+.+|+++.-..+..+.+-.++.
T Consensus       139 --vVYsiH~a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~  178 (198)
T COG2263         139 --VVYSIHKAGSRDFVEKFAADLGGTVTHIERARFPIPRTYP  178 (198)
T ss_pred             --eEEEeeccccHHHHHHHHHhcCCeEEEEEEEEEecCccCc
Confidence              11110  112277889999999998877776665555443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.40  E-value=3.1e-06  Score=73.13  Aligned_cols=107  Identities=21%  Similarity=0.187  Sum_probs=81.2

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      ..+||||||.|...             ..++.       .+          +...++|+|+....+..+.+.+.      
T Consensus        50 pi~lEIGfG~G~~l-------------~~~A~-------~n----------P~~nfiGiEi~~~~v~~~l~k~~------   93 (227)
T COG0220          50 PIVLEIGFGMGEFL-------------VEMAK-------KN----------PEKNFLGIEIRVPGVAKALKKIK------   93 (227)
T ss_pred             cEEEEECCCCCHHH-------------HHHHH-------HC----------CCCCEEEEEEehHHHHHHHHHHH------
Confidence            47999999999987             44443       22          56789999999999999999888      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccc-----c---HHHHHHHHHH
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVT-----R---IDKALSEAYR  193 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~-----~---~~~~l~~~~~  193 (241)
                                         +.++.  ++.+++.|+..+-   .++++.|-|..++.=-|..     +   ...+++.+.+
T Consensus        94 -------------------~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~  152 (227)
T COG0220          94 -------------------ELGLK--NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYAR  152 (227)
T ss_pred             -------------------HcCCC--cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHH
Confidence                               66764  6999999987651   3344899998765432211     1   2689999999


Q ss_pred             hccCCcEEEEEecCH
Q psy1420         194 VLKPGGRFLCLEFSH  208 (241)
Q Consensus       194 ~LkpgG~l~i~~~~~  208 (241)
                      .|+|||.|.+.+=..
T Consensus       153 ~Lk~gG~l~~aTD~~  167 (227)
T COG0220         153 KLKPGGVLHFATDNE  167 (227)
T ss_pred             HccCCCEEEEEecCH
Confidence            999999999876444

>KOG1661|consensus

Probab=98.36  E-value=1.8e-06  Score=73.27  Aligned_cols=113  Identities=19%  Similarity=0.251  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..||.++||+|+|+|+++             .    -+|.++...           .....|+|.-+..++.+++++...
T Consensus        80 L~pG~s~LdvGsGSGYLt-------------~----~~~~mvg~~-----------g~~~~GIEh~~eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLT-------------A----CFARMVGAT-----------GGNVHGIEHIPELVEYSKKNLDKD  131 (237)
T ss_pred             hccCcceeecCCCccHHH-------------H----HHHHHhcCC-----------CccccchhhhHHHHHHHHHHHHhh
Confidence            468999999999999988             2    233344332           334489999999999999988732


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                      .-.+++                 ...+..+++.++.+|-...-.+..+||+|.+....      .+..+++...|+|||+
T Consensus       132 i~~~e~-----------------~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGr  188 (237)
T KOG1661|consen  132 ITTSES-----------------SSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGR  188 (237)
T ss_pred             ccCchh-----------------hhhhccCceEEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCe
Confidence            211111                 11223357888899988776667899999987433      3445667788999999


Q ss_pred             EEEE
Q psy1420         201 FLCL  204 (241)
Q Consensus       201 l~i~  204 (241)
                      +++.
T Consensus       189 llip  192 (237)
T KOG1661|consen  189 LLIP  192 (237)
T ss_pred             EEEe
Confidence            9884

>PHA03412 putative methyltransferase; Provisional

Probab=98.32  E-value=1.8e-06  Score=74.92  Aligned_cols=118  Identities=9%  Similarity=0.178  Sum_probs=78.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+.+|||+|||+|.++             ..++.    .+...          ....++++|+++.+++.++++..    
T Consensus        49 ~~grVLDlG~GSG~La-------------lala~----~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~----   97 (241)
T PHA03412         49 TSGSVVDLCAGIGGLS-------------FAMVH----MMMYA----------KPREIVCVELNHTYYKLGKRIVP----   97 (241)
T ss_pred             CCCEEEEccChHHHHH-------------HHHHH----hcccC----------CCcEEEEEECCHHHHHHHHhhcc----
Confidence            3679999999999988             33322    11111          23579999999999999997754    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc------------ccHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV------------TRIDKALSE  190 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~------------~~~~~~l~~  190 (241)
                                                  ++.+...|+...+. ..+||+|+++--....            .-...++..
T Consensus        98 ----------------------------~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~  148 (241)
T PHA03412         98 ----------------------------EATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIER  148 (241)
T ss_pred             ----------------------------CCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHH
Confidence                                        36678888876554 4589999987332211            113568888


Q ss_pred             HHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCc
Q psy1420         191 AYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQ  221 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~  221 (241)
                      +.++++||+. ++-..                  +..+..++.++.|+.
T Consensus       149 A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (241)
T PHA03412        149 ASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE  196 (241)
T ss_pred             HHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence            8886666664 33110                  007777888888864

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.32  E-value=6.8e-06  Score=76.31  Aligned_cols=127  Identities=17%  Similarity=0.203  Sum_probs=93.8

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      |.+||++=|-||.++             ...+.                  ....+++.+|.|...++.+++++.     
T Consensus       218 GkrvLNlFsYTGgfS-------------v~Aa~------------------gGA~~vt~VD~S~~al~~a~~N~~-----  261 (393)
T COG1092         218 GKRVLNLFSYTGGFS-------------VHAAL------------------GGASEVTSVDLSKRALEWARENAE-----  261 (393)
T ss_pred             CCeEEEecccCcHHH-------------HHHHh------------------cCCCceEEEeccHHHHHHHHHHHH-----
Confidence            889999999999998             43333                  023489999999999999999998     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeee---------hhhccccHHHHHHH
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAF---------GIRNVTRIDKALSE  190 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~---------~l~~~~~~~~~l~~  190 (241)
                                          -+++...+.+++++|+.+.    .-...+||+|+.--         ......+..+.+..
T Consensus       262 --------------------LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~  321 (393)
T COG1092         262 --------------------LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDL  321 (393)
T ss_pred             --------------------hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHH
Confidence                                7777666789999997764    12245899999631         11223466788999


Q ss_pred             HHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEE
Q psy1420         191 AYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~  226 (241)
                      +.++|+|||.+++++-+.        +.+...+...|.....+.
T Consensus       322 ~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~  365 (393)
T COG1092         322 ALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE  365 (393)
T ss_pred             HHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence            999999999999877555        444555566666655443

>KOG1499|consensus

Probab=98.32  E-value=2e-06  Score=77.91  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=78.8

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+...-..-++..|||+|||||-++             .         .+.+         .....++++|.|..+ +.
T Consensus        50 ~~i~~n~~lf~dK~VlDVGcGtGILS-------------~---------F~ak---------AGA~~V~aVe~S~ia-~~   97 (346)
T KOG1499|consen   50 NAILQNKHLFKDKTVLDVGCGTGILS-------------M---------FAAK---------AGARKVYAVEASSIA-DF   97 (346)
T ss_pred             HHHhcchhhcCCCEEEEcCCCccHHH-------------H---------HHHH---------hCcceEEEEechHHH-HH
Confidence            33444434457789999999999988             2         2211         245689999987766 77


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc---cccHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN---VTRIDKALS  189 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~---~~~~~~~l~  189 (241)
                      +.+.+.                         ..++. +.++++.+.++++.+|..++|+|++-+.=+.   -.-.+..|-
T Consensus        98 a~~iv~-------------------------~N~~~-~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~  151 (346)
T KOG1499|consen   98 ARKIVK-------------------------DNGLE-DVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLY  151 (346)
T ss_pred             HHHHHH-------------------------hcCcc-ceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhh
Confidence            887777                         55665 5689999999988776789999997543222   123345555


Q ss_pred             HHHHhccCCcEEE
Q psy1420         190 EAYRVLKPGGRFL  202 (241)
Q Consensus       190 ~~~~~LkpgG~l~  202 (241)
                      .=-+.|+|||.++
T Consensus       152 ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  152 ARDKWLKEGGLIY  164 (346)
T ss_pred             hhhhccCCCceEc
Confidence            5567999999986

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.27  E-value=2e-06  Score=75.32  Aligned_cols=104  Identities=10%  Similarity=0.038  Sum_probs=78.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|||+|+++|+.+             ..++..++                ...+++.+|.++...+.|++.+.   
T Consensus        78 ~~ak~iLEiGT~~GySa-------------l~la~al~----------------~~g~v~tiE~~~~~~~~Ar~~~~---  125 (247)
T PLN02589         78 INAKNTMEIGVYTGYSL-------------LATALALP----------------EDGKILAMDINRENYELGLPVIQ---  125 (247)
T ss_pred             hCCCEEEEEeChhhHHH-------------HHHHhhCC----------------CCCEEEEEeCCHHHHHHHHHHHH---
Confidence            34558999999999988             33333111                35689999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C-----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                                            +.++. ++++++.+++.+. + .     ..++||+|+.-..   -......++.+.++
T Consensus       126 ----------------------~ag~~-~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~l  179 (247)
T PLN02589        126 ----------------------KAGVA-HKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDL  179 (247)
T ss_pred             ----------------------HCCCC-CceEEEeccHHHHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHh
Confidence                                  77876 7899999987653 2 1     1368999997433   23455777888899


Q ss_pred             ccCCcEEEE
Q psy1420         195 LKPGGRFLC  203 (241)
Q Consensus       195 LkpgG~l~i  203 (241)
                      |+|||.+++
T Consensus       180 l~~GGviv~  188 (247)
T PLN02589        180 VKVGGVIGY  188 (247)
T ss_pred             cCCCeEEEE
Confidence            999999886

>PRK00536 speE spermidine synthase; Provisional

Probab=98.25  E-value=8.7e-06  Score=71.81  Aligned_cols=123  Identities=12%  Similarity=0.031  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      ....+||-+|+|.|..+             +.++.                   ...+++.+|+++..++.+++-...+ 
T Consensus        71 ~~pk~VLIiGGGDGg~~-------------REvLk-------------------h~~~v~mVeID~~Vv~~~k~~lP~~-  117 (262)
T PRK00536         71 KELKEVLIVDGFDLELA-------------HQLFK-------------------YDTHVDFVQADEKILDSFISFFPHF-  117 (262)
T ss_pred             CCCCeEEEEcCCchHHH-------------HHHHC-------------------cCCeeEEEECCHHHHHHHHHHCHHH-
Confidence            34469999999999998             77776                   2348999999999999999865521 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ...+.+++++++.. +.+  ...++||+|++-..     ....+.+.+++.|+|||.+
T Consensus       118 ----------------------~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~  167 (262)
T PRK00536        118 ----------------------HEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVF  167 (262)
T ss_pred             ----------------------HHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEE
Confidence                                  11344467877752 221  12368999997532     3467789999999999999


Q ss_pred             EEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFSH-------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +...-+.       ..+.+.+++ .|..+.....
T Consensus       168 v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~  200 (262)
T PRK00536        168 ISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVA  200 (262)
T ss_pred             EECCCCcccCHHHHHHHHHHHHh-hCCceEEEEe
Confidence            8754333       344444555 5886655544

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.24  E-value=2.5e-05  Score=66.97  Aligned_cols=126  Identities=21%  Similarity=0.254  Sum_probs=96.8

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +.+++|+|+|.|--+             ..++       ...          +...++.+|....-+.+.+....     
T Consensus        68 ~~~~~DIGSGaGfPG-------------ipLA-------I~~----------p~~~vtLles~~Kk~~FL~~~~~-----  112 (215)
T COG0357          68 AKRVLDIGSGAGFPG-------------IPLA-------IAF----------PDLKVTLLESLGKKIAFLREVKK-----  112 (215)
T ss_pred             CCEEEEeCCCCCCch-------------hhHH-------Hhc----------cCCcEEEEccCchHHHHHHHHHH-----
Confidence            579999999999887             2211       111          34569999999999999888777     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCc-eeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                          ..+++  +++++++.+++..-. .. ||+|++    +.+.+....++-+...+|+||.++
T Consensus       113 --------------------eL~L~--nv~i~~~RaE~~~~~-~~~~D~vts----RAva~L~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         113 --------------------ELGLE--NVEIVHGRAEEFGQE-KKQYDVVTS----RAVASLNVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             --------------------HhCCC--CeEEehhhHhhcccc-cccCcEEEe----ehccchHHHHHHHHHhcccCCcch
Confidence                                45555  799999999987532 23 999998    667788889999999999999876


Q ss_pred             EEecCH-----HHHHHHHHHCCCceEEEEEecCc
Q psy1420         203 CLEFSH-----EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       203 i~~~~~-----~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      +.-+..     .+.+......|+.+.++......
T Consensus       166 ~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p  199 (215)
T COG0357         166 AYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVP  199 (215)
T ss_pred             hhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence            544333     77788888999999888887643

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.24  E-value=1.2e-05  Score=69.51  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=75.1

Q ss_pred             HHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ..+++.+.. .++.++||+|||||.++             ..++.                  .....++++|+++.++.
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t-------------~~l~~------------------~ga~~v~avD~~~~~l~  112 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFT-------------DCALQ------------------KGAKEVYGVDVGYNQLA  112 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHH-------------HHHHH------------------cCCCEEEEEeCCHHHHH
Confidence            345555544 46778999999999998             43333                  12457999999998886


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      ...+.-.           +...+           +.  .+++  ..+.+..+..-..+|+++++..+        .+..+
T Consensus       113 ~~l~~~~-----------~v~~~-----------~~--~ni~--~~~~~~~~~d~~~~DvsfiS~~~--------~l~~i  158 (228)
T TIGR00478       113 EKLRQDE-----------RVKVL-----------ER--TNIR--YVTPADIFPDFATFDVSFISLIS--------ILPEL  158 (228)
T ss_pred             HHHhcCC-----------CeeEe-----------ec--CCcc--cCCHhHcCCCceeeeEEEeehHh--------HHHHH
Confidence            6222111           00000           00  0111  12222222122367888776544        36678


Q ss_pred             HHhccCCcEEEEEe---cCH---------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         192 YRVLKPGGRFLCLE---FSH---------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       192 ~~~LkpgG~l~i~~---~~~---------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .+.|+| |.+++.-   |..                     +.+...+.+.||.+......
T Consensus       159 ~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  218 (228)
T TIGR00478       159 DLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS  218 (228)
T ss_pred             HHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence            888888 7665432   111                     66777788889987766544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.24  E-value=1.2e-05  Score=76.44  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=87.8

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ++.++.+|||+++|+|.-+             .+++..|+                ....+++.|+++..++.+.++++ 
T Consensus       110 ~~~pg~~VLD~CAAPGgKT-------------t~la~~l~----------------~~g~lvA~D~~~~R~~~L~~nl~-  159 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKT-------------TQIAALMN----------------NQGAIVANEYSASRVKVLHANIS-  159 (470)
T ss_pred             CCCCCCEEEEeCCCccHHH-------------HHHHHHcC----------------CCCEEEEEeCCHHHHHHHHHHHH-
Confidence            6689999999999999988             55544222                24589999999999999999999 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEe----eee--hhhcccc---------
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYT----IAF--GIRNVTR---------  183 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~----~~~--~l~~~~~---------  183 (241)
                                              +.++.  ++.+...|...++ .....||.|+    |+.  .++.-++         
T Consensus       160 ------------------------r~G~~--nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~  213 (470)
T PRK11933        160 ------------------------RCGVS--NVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPES  213 (470)
T ss_pred             ------------------------HcCCC--eEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHH
Confidence                                    66765  5777778876553 2245799999    442  2221111         


Q ss_pred             -------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC
Q psy1420         184 -------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG  219 (241)
Q Consensus       184 -------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G  219 (241)
                             -.++|..+.++|||||+|+-++.+-      +.+..++++.+
T Consensus       214 v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        214 NLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP  262 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence                   1578899999999999998766443      33445555553

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.22  E-value=3.8e-06  Score=74.36  Aligned_cols=86  Identities=14%  Similarity=0.179  Sum_probs=64.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt-------------~~L~~-------------------~~~~v~avE~d~~~   76 (272)
T PRK00274         29 NILDKIVDAAGPQPGDNVLEIGPGLGALT-------------EPLLE-------------------RAAKVTAVEIDRDL   76 (272)
T ss_pred             HHHHHHHHhcCCCCcCeEEEeCCCccHHH-------------HHHHH-------------------hCCcEEEEECCHHH
Confidence            34566777777778889999999999998             44444                   23479999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG  177 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~  177 (241)
                      ++.++++..                         .     ++++++++|+...+.++-..|.|+++.-
T Consensus        77 ~~~~~~~~~-------------------------~-----~~v~~i~~D~~~~~~~~~~~~~vv~NlP  114 (272)
T PRK00274         77 APILAETFA-------------------------E-----DNLTIIEGDALKVDLSELQPLKVVANLP  114 (272)
T ss_pred             HHHHHHhhc-------------------------c-----CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence            999987654                         1     3688999999988654322477776543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.22  E-value=9.8e-06  Score=66.58  Aligned_cols=147  Identities=10%  Similarity=0.160  Sum_probs=104.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.|...+++..+.-|||+|.|||..+             +.++.-       .         .....++++|++++..
T Consensus        36 lA~~M~s~I~pesglpVlElGPGTGV~T-------------kaIL~~-------g---------v~~~~L~~iE~~~dF~   86 (194)
T COG3963          36 LARKMASVIDPESGLPVLELGPGTGVIT-------------KAILSR-------G---------VRPESLTAIEYSPDFV   86 (194)
T ss_pred             HHHHHHhccCcccCCeeEEEcCCccHhH-------------HHHHhc-------C---------CCccceEEEEeCHHHH
Confidence            3567888889999999999999999999             555440       0         1356799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeehhhcccc--
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFGIRNVTR--  183 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~l~~~~~--  183 (241)
                      ....+...                                ...++++|+..+.     .....||.|+|+.-+.+++-  
T Consensus        87 ~~L~~~~p--------------------------------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~  134 (194)
T COG3963          87 CHLNQLYP--------------------------------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHR  134 (194)
T ss_pred             HHHHHhCC--------------------------------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHH
Confidence            98887654                                3557888877764     33557999999988887763  


Q ss_pred             HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCC-CceEEEEEe--cCceeEEEeeec
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAG-FQYVTYENL--TFGVVAIHSGFK  240 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~G-f~~~~~~~~--~~~~~~~~~~~~  240 (241)
                      ..+.|+.+...|.+||.++-.++++  +...+...| |.+..+...  ++.-+.+|+.++
T Consensus       135 ~iaile~~~~rl~~gg~lvqftYgp--~s~v~l~r~~y~v~~~~~vvRN~PPA~v~~~~~  192 (194)
T COG3963         135 RIAILESLLYRLPAGGPLVQFTYGP--LSPVLLGRGDYNVQHFDFVVRNFPPAQVWIYRR  192 (194)
T ss_pred             HHHHHHHHHHhcCCCCeEEEEEecC--CCcccccccceeEEEeeEEEecCCceeEEEeec
Confidence            4688999999999999999888764  122222233 333333333  456666666554

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.21  E-value=3.3e-05  Score=70.07  Aligned_cols=140  Identities=11%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.++||||||+|...                 +.++.   ..          ....++++|+++.+++.|+.++.    
T Consensus       114 ~~~~vLDIGtGag~I~-----------------~lLa~---~~----------~~~~~~atDId~~Al~~A~~Nv~----  159 (321)
T PRK11727        114 ANVRVLDIGVGANCIY-----------------PLIGV---HE----------YGWRFVGSDIDPQALASAQAIIS----  159 (321)
T ss_pred             CCceEEEecCCccHHH-----------------HHHHh---hC----------CCCEEEEEeCCHHHHHHHHHHHH----
Confidence            5678999999998665                 32221   11          24579999999999999999998    


Q ss_pred             ccccccccceecceeeeeecccc-CCCCCCeeEEe-cccCCCC----CCCCceeEEeeeehhhccccH-----HHHHHH-
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLE-ANAEELP----IESDSYSAYTIAFGIRNVTRI-----DKALSE-  190 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~d~~~~~----~~~~~~D~V~~~~~l~~~~~~-----~~~l~~-  190 (241)
                                           .. ++. .+++++. .+.....    .+.+.||+|+|+--++.-...     ..-.+. 
T Consensus       160 ---------------------~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~  217 (321)
T PRK11727        160 ---------------------ANPGLN-GAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNL  217 (321)
T ss_pred             ---------------------hccCCc-CcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhh
Confidence                                 44 344 4566643 2222211    135689999998554421110     111111 


Q ss_pred             ---------------HHHhccCCcEEEEEecCH-----------------------HHHHHHHHHCCCceEEEEEec-Cc
Q psy1420         191 ---------------AYRVLKPGGRFLCLEFSH-----------------------EEFKSMIESAGFQYVTYENLT-FG  231 (241)
Q Consensus       191 ---------------~~~~LkpgG~l~i~~~~~-----------------------~~~~~~l~~~Gf~~~~~~~~~-~~  231 (241)
                                     ..+++.+||.+.++.--.                       +.+.+.|++.|...++...+. +.
T Consensus       218 ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~  297 (321)
T PRK11727        218 GLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQ  297 (321)
T ss_pred             hccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCC
Confidence                           234455778765543111                       888999999999666666553 33


Q ss_pred             eeEEEee
Q psy1420         232 VVAIHSG  238 (241)
Q Consensus       232 ~~~~~~~  238 (241)
                      -..-++|
T Consensus       298 ~~~~~va  304 (321)
T PRK11727        298 KQSRFIA  304 (321)
T ss_pred             eeeEEEE
Confidence            3333343

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.21  E-value=1.9e-05  Score=70.04  Aligned_cols=133  Identities=10%  Similarity=0.030  Sum_probs=78.8

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+...+..-...+|||+|+|+|..+             ..+.+..+                ...+++++|.|+.|++.
T Consensus        23 ~El~~r~p~f~P~~vLD~GsGpGta~-------------wAa~~~~~----------------~~~~~~~vd~s~~~~~l   73 (274)
T PF09243_consen   23 SELRKRLPDFRPRSVLDFGSGPGTAL-------------WAAREVWP----------------SLKEYTCVDRSPEMLEL   73 (274)
T ss_pred             HHHHHhCcCCCCceEEEecCChHHHH-------------HHHHHHhc----------------CceeeeeecCCHHHHHH
Confidence            34444444344559999999999765             22223111                24578999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~  190 (241)
                      ++......+.                        ..  .... ..+......+..+.|+|+++++|..+++  ...+++.
T Consensus        74 ~~~l~~~~~~------------------------~~--~~~~-~~~~~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~  126 (274)
T PF09243_consen   74 AKRLLRAGPN------------------------NR--NAEW-RRVLYRDFLPFPPDDLVIASYVLNELPSAARAELVRS  126 (274)
T ss_pred             HHHHHhcccc------------------------cc--cchh-hhhhhcccccCCCCcEEEEehhhhcCCchHHHHHHHH
Confidence            9887662110                        00  0001 0111110011122399999999998876  2344444


Q ss_pred             HHHhccCCcEEEEEecCH-------HHHHHHHHHCCCceE
Q psy1420         191 AYRVLKPGGRFLCLEFSH-------EEFKSMIESAGFQYV  223 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~  223 (241)
                      +-+.+.  +.|++++.+.       .+.++.+.+.|+.++
T Consensus       127 LW~~~~--~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~  164 (274)
T PF09243_consen  127 LWNKTA--PVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV  164 (274)
T ss_pred             HHHhcc--CcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence            444444  4888888777       777788877777653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.20  E-value=6e-06  Score=72.47  Aligned_cols=88  Identities=11%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..+.+.+.+.++..++.+|||+|||+|..+             ..++.                   ....++++|+++.
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~~L~~-------------------~~~~v~~vEid~~   62 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALT-------------DELAK-------------------RAKKVYAIELDPR   62 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHH-------------HHHHH-------------------hCCEEEEEECCHH
Confidence            345566777777778889999999999998             44444                   2457999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR  179 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~  179 (241)
                      +++.+++++.                         .  .  ++++++++|+...+.+  .+|.|+++...+
T Consensus        63 ~~~~l~~~~~-------------------------~--~--~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~  102 (258)
T PRK14896         63 LAEFLRDDEI-------------------------A--A--GNVEIIEGDALKVDLP--EFNKVVSNLPYQ  102 (258)
T ss_pred             HHHHHHHHhc-------------------------c--C--CCEEEEEeccccCCch--hceEEEEcCCcc
Confidence            9999987765                         2  1  3689999999887754  479998875543

>KOG2915|consensus

Probab=98.20  E-value=3.6e-05  Score=67.77  Aligned_cols=135  Identities=13%  Similarity=0.116  Sum_probs=101.0

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..++..++.+||.+|+|-|+|+|..+             ..++..+|                +..+++..|+.....+.
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlS-------------haiaraV~----------------ptGhl~tfefH~~Ra~k  145 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLS-------------HAIARAVA----------------PTGHLYTFEFHETRAEK  145 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHH-------------HHHHHhhC----------------cCcceEEEEecHHHHHH
Confidence            45667778899999999999999999             55555443                56789999998888888


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC--CCceeEEeeeehhhccccHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE--SDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+...                         ..+++ +++++..-|+....+.  +..+|+|+.     .++.|..++-.
T Consensus       146 a~eeFr-------------------------~hgi~-~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw~AiPh  194 (314)
T KOG2915|consen  146 ALEEFR-------------------------EHGIG-DNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPWEAIPH  194 (314)
T ss_pred             HHHHHH-------------------------HhCCC-cceEEEEeecccCCccccccccceEEE-----cCCChhhhhhh
Confidence            888877                         66666 7889998888876543  568899984     56788888888


Q ss_pred             HHHhccCCc-EEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420         191 AYRVLKPGG-RFLCLEFSH---EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       191 ~~~~LkpgG-~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~  227 (241)
                      +.++||.+| +++..+...   +.--+.+.++||..+.+..
T Consensus       195 a~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vE  235 (314)
T KOG2915|consen  195 AAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVE  235 (314)
T ss_pred             hHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            999999877 554333222   4445678899986554443

>KOG3987|consensus

Probab=98.20  E-value=1.7e-06  Score=73.45  Aligned_cols=118  Identities=16%  Similarity=0.217  Sum_probs=88.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+.++||+|+|.|..+             .++.|                   ...++++++.|..|....+++-.    
T Consensus       112 ~~~~lLDlGAGdGeit-------------~~m~p-------------------~feevyATElS~tMr~rL~kk~y----  155 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEIT-------------LRMAP-------------------TFEEVYATELSWTMRDRLKKKNY----  155 (288)
T ss_pred             CCeeEEeccCCCcchh-------------hhhcc-------------------hHHHHHHHHhhHHHHHHHhhcCC----
Confidence            3468999999999999             77777                   45679999999999988875532    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEE-ecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccC-CcE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL-EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGR  200 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~  200 (241)
                                                    .++ ..+..+.   +-++|+|.|-..+..--++-+.|+.++.+|.| +|+
T Consensus       156 ------------------------------nVl~~~ew~~t---~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngr  202 (288)
T KOG3987|consen  156 ------------------------------NVLTEIEWLQT---DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGR  202 (288)
T ss_pred             ------------------------------ceeeehhhhhc---CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCc
Confidence                                          111 1111111   34699999998888777899999999999999 888


Q ss_pred             EEEEe---cCH----------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         201 FLCLE---FSH----------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       201 l~i~~---~~~----------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++.-   +.+                            ..+-++++.+||++....++.
T Consensus       203 vivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP  262 (288)
T KOG3987|consen  203 VIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP  262 (288)
T ss_pred             EEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence            77632   111                            556778999999988777664

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.19  E-value=1.4e-05  Score=69.82  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.+
T Consensus        16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt-------------~~L~~-------------------~~~~v~~iE~d~~~   63 (253)
T TIGR00755        16 SVIQKIVEAANVLEGDVVLEIGPGLGALT-------------EPLLK-------------------RAKKVTAIEIDPRL   63 (253)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCCCCHHH-------------HHHHH-------------------hCCcEEEEECCHHH
Confidence            34566777777778889999999999998             44444                   23469999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCcee---EEeeeeh
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYS---AYTIAFG  177 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D---~V~~~~~  177 (241)
                      ++.++.+..                         .    .++++++++|+...+.+  .+|   .|+++..
T Consensus        64 ~~~l~~~~~-------------------------~----~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP  103 (253)
T TIGR00755        64 AEILRKLLS-------------------------L----YERLEVIEGDALKVDLP--DFPKQLKVVSNLP  103 (253)
T ss_pred             HHHHHHHhC-------------------------c----CCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence            999887654                         1    14688999999888764  455   6665544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.19  E-value=5.5e-06  Score=74.31  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=68.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.....++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT-------------~~Ll~-------------------~~~~V~avEiD~~l   70 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLT-------------EKLLQ-------------------LAKKVIAIEIDPRM   70 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHH-------------HHHHH-------------------hCCcEEEEECCHHH
Confidence            45566777777788889999999999998             54444                   34579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI  178 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l  178 (241)
                      ++.+++++.                         ..+.. ++++++++|+...+.+  .+|.|+++...
T Consensus        71 i~~l~~~~~-------------------------~~~~~-~~v~ii~~Dal~~~~~--~~d~VvaNlPY  111 (294)
T PTZ00338         71 VAELKKRFQ-------------------------NSPLA-SKLEVIEGDALKTEFP--YFDVCVANVPY  111 (294)
T ss_pred             HHHHHHHHH-------------------------hcCCC-CcEEEEECCHhhhccc--ccCEEEecCCc
Confidence            999998876                         33322 4789999999876543  58988865443

>KOG2904|consensus

Probab=98.12  E-value=2e-05  Score=69.50  Aligned_cols=119  Identities=18%  Similarity=0.317  Sum_probs=79.4

Q ss_pred             HHHHHHhhcCC---CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          31 WKDIFIDRLGP---THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        31 ~~~~~~~~l~~---~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      |.+.+.+.++.   .++..+||+|||+|..+             ..++.       +.          +.+.++++|.|+
T Consensus       133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIs-------------lsll~-------~L----------~~~~v~AiD~S~  182 (328)
T KOG2904|consen  133 WVEAVIDALNNSEHSKHTHILDLGTGSGAIS-------------LSLLH-------GL----------PQCTVTAIDVSK  182 (328)
T ss_pred             HHHHHHHHHhhhhhcccceEEEecCCccHHH-------------HHHHh-------cC----------CCceEEEEeccH
Confidence            44444444432   34558999999999988             44433       11          367899999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-----CCCCCceeEEeeeeh--hh-
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-----PIESDSYSAYTIAFG--IR-  179 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~V~~~~~--l~-  179 (241)
                      .++..+.+++.                         +.++. +++.+++.+.+..     +...+++|+++++--  -+ 
T Consensus       183 ~Ai~La~eN~q-------------------------r~~l~-g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~d  236 (328)
T KOG2904|consen  183 AAIKLAKENAQ-------------------------RLKLS-GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKD  236 (328)
T ss_pred             HHHHHHHHHHH-------------------------HHhhc-CceEEEecccccccccccccccCceeEEecCCCccccc
Confidence            99999999988                         66665 5777775543332     234578999887621  11 


Q ss_pred             ---c--------------------cccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         180 ---N--------------------VTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       180 ---~--------------------~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                         .                    .......+.-+.|+|+|||.+.+..
T Consensus       237 D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  237 DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence               0                    0012355677889999999988743

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.10  E-value=2e-05  Score=75.68  Aligned_cols=124  Identities=13%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+..+||+|||.|.+.             ..++.       ..          +...++|+|+....+..+.+++.    
T Consensus       347 ~~p~~lEIG~G~G~~~-------------~~~A~-------~~----------p~~~~iGiE~~~~~~~~~~~~~~----  392 (506)
T PRK01544        347 KRKVFLEIGFGMGEHF-------------INQAK-------MN----------PDALFIGVEVYLNGVANVLKLAG----  392 (506)
T ss_pred             CCceEEEECCCchHHH-------------HHHHH-------hC----------CCCCEEEEEeeHHHHHHHHHHHH----
Confidence            4557999999999987             44433       12          46789999999998888887776    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccc-----c---HHHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVT-----R---IDKALSEAY  192 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~-----~---~~~~l~~~~  192 (241)
                                           +.++.  ++.+++.|+..+  -++++++|.|+.++.=-|..     .   -..+++.+.
T Consensus       393 ---------------------~~~l~--N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~  449 (506)
T PRK01544        393 ---------------------EQNIT--NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQ  449 (506)
T ss_pred             ---------------------HcCCC--eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHH
Confidence                                 55554  677777776533  24567899998765432211     1   158999999


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCC-CceE
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAG-FQYV  223 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~G-f~~~  223 (241)
                      ++|||||.+.+.+-..   ....+.+.+.+ |...
T Consensus       450 ~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~  484 (506)
T PRK01544        450 DKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII  484 (506)
T ss_pred             HhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence            9999999999876555   44455556655 7654

>KOG1331|consensus

Probab=98.09  E-value=3.4e-06  Score=74.52  Aligned_cols=99  Identities=24%  Similarity=0.241  Sum_probs=78.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+..++|+|||.|...                .+                  .+.....+.|.+...+..+++.-     
T Consensus        45 ~gsv~~d~gCGngky~----------------~~------------------~p~~~~ig~D~c~~l~~~ak~~~-----   85 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYL----------------GV------------------NPLCLIIGCDLCTGLLGGAKRSG-----   85 (293)
T ss_pred             CcceeeecccCCcccC----------------cC------------------CCcceeeecchhhhhccccccCC-----
Confidence            4778999999999866                11                  14567889998887776665321     


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc---cHHHHHHHHHHhccCCc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGG  199 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~---~~~~~l~~~~~~LkpgG  199 (241)
                                                  ......+|+..+|+++.+||.+++..++||+.   ....+++++.|+++|||
T Consensus        86 ----------------------------~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg  137 (293)
T KOG1331|consen   86 ----------------------------GDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGG  137 (293)
T ss_pred             ----------------------------CceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence                                        12567899999999999999999999999875   45799999999999999


Q ss_pred             EEEEEecCH
Q psy1420         200 RFLCLEFSH  208 (241)
Q Consensus       200 ~l~i~~~~~  208 (241)
                      ..++..+..
T Consensus       138 ~~lvyvwa~  146 (293)
T KOG1331|consen  138 NALVYVWAL  146 (293)
T ss_pred             ceEEEEehh
Confidence            988766554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.06  E-value=5.2e-06  Score=78.39  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=52.0

Q ss_pred             ccCCCCCCCCceeEEeeeehhhcc-ccHHHHHHHHHHhccCCcEEEEEecCH------------HHHHHHHHHCCCceEE
Q psy1420         158 NAEELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQYVT  224 (241)
Q Consensus       158 d~~~~~~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~  224 (241)
                      ....+|+++..||+|.|+.++..+ ++-...|-++.|+|+|||+++.+....            ..++++.++..++.+.
T Consensus       171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va  250 (506)
T PF03141_consen  171 GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA  250 (506)
T ss_pred             ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence            356789999999999999887654 334578899999999999998865321            5666777777776555


Q ss_pred             EE
Q psy1420         225 YE  226 (241)
Q Consensus       225 ~~  226 (241)
                      .+
T Consensus       251 ~~  252 (506)
T PF03141_consen  251 EK  252 (506)
T ss_pred             ee
Confidence            44

; GO: 0008168 methyltransferase activity

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.06  E-value=1.3e-05  Score=71.52  Aligned_cols=142  Identities=18%  Similarity=0.224  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      ++..+..+.+.   .++.+||++=|-||.++             ...+.                  ....+++.+|.|.
T Consensus       111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfs-------------v~Aa~------------------gGA~~v~~VD~S~  156 (286)
T PF10672_consen  111 QRENRKWVRKY---AKGKRVLNLFSYTGGFS-------------VAAAA------------------GGAKEVVSVDSSK  156 (286)
T ss_dssp             GHHHHHHHHHH---CTTCEEEEET-TTTHHH-------------HHHHH------------------TTESEEEEEES-H
T ss_pred             HHhhHHHHHHH---cCCCceEEecCCCCHHH-------------HHHHH------------------CCCCEEEEEeCCH
Confidence            34445555554   34679999999999988             33332                  0234799999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--CCCCceeEEeee---eh---h
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--IESDSYSAYTIA---FG---I  178 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~V~~~---~~---l  178 (241)
                      .+++.+++++.                         -++++..++++++.|+... .  -..++||+|++-   +.   .
T Consensus       157 ~al~~a~~N~~-------------------------lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~  211 (286)
T PF10672_consen  157 RALEWAKENAA-------------------------LNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKF  211 (286)
T ss_dssp             HHHHHHHHHHH-------------------------HTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTC
T ss_pred             HHHHHHHHHHH-------------------------HcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHH
Confidence            99999999988                         5566556789999997652 1  124589999963   11   1


Q ss_pred             hccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEe
Q psy1420         179 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       179 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .-..+..+.+..+.++|+|||.|+++..++    +.+.+.+.+++-++.-.+++
T Consensus       212 ~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~  265 (286)
T PF10672_consen  212 DLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERL  265 (286)
T ss_dssp             EHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeee
Confidence            112356788899999999999988776555    66777777666444444444

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.00  E-value=0.00017  Score=66.51  Aligned_cols=149  Identities=17%  Similarity=0.109  Sum_probs=100.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC--CCcch------------hhhc--
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ--WKPYQ------------YLVE--   94 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~~--   94 (241)
                      +...++.+.+++++..++|..||+|++.             +..+-     +..+  |+.++            =||+  
T Consensus       179 LAaAil~lagw~~~~pl~DPmCGSGTi~-------------IEAAl-----~~~niAPg~~R~~~f~~w~~~~~~lw~~~  240 (381)
T COG0116         179 LAAAILLLAGWKPDEPLLDPMCGSGTIL-------------IEAAL-----IAANIAPGLNRRFGFEFWDWFDKDLWDKL  240 (381)
T ss_pred             HHHHHHHHcCCCCCCccccCCCCccHHH-------------HHHHH-----hccccCCccccccchhhhhhccHHHHHHH
Confidence            3456777778888889999999999987             44432     1110  10000            0000  


Q ss_pred             -----------ccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC
Q psy1420          95 -----------SIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP  163 (241)
Q Consensus        95 -----------~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  163 (241)
                                 .....++|.|+++.+++.|+.++.                         ..++. +.+.|.+.|+..++
T Consensus       241 ~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~-------------------------~AGv~-d~I~f~~~d~~~l~  294 (381)
T COG0116         241 REEAEERARRGKELPIIYGSDIDPRHIEGAKANAR-------------------------AAGVG-DLIEFKQADATDLK  294 (381)
T ss_pred             HHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHH-------------------------hcCCC-ceEEEEEcchhhCC
Confidence                       001147799999999999999999                         88887 78999999999886


Q ss_pred             CCCCceeEEeee--ehhhcccc------HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceE
Q psy1420         164 IESDSYSAYTIA--FGIRNVTR------IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYV  223 (241)
Q Consensus       164 ~~~~~~D~V~~~--~~l~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~  223 (241)
                      .+.+.+|+|+|+  ++.+--..      ...+.+.+.+.++--++.+++..........+++.++...
T Consensus       295 ~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~~~~~~ra~~~~~~  362 (381)
T COG0116         295 EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSEDLLFCLGLRADKKRKL  362 (381)
T ss_pred             CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHHHHHHHhhhhccceee
Confidence            544689999997  45442222      2355566777777777888777666666666666665433

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.99  E-value=0.00018  Score=61.80  Aligned_cols=131  Identities=16%  Similarity=0.165  Sum_probs=88.7

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +..++|.+||-+|.++|++.             .++..++|                ..+.++++|.|+...+.....+.
T Consensus        69 ~~ik~gskVLYLGAasGTTV-------------SHvSDIvg----------------~~G~VYaVEfs~r~~rdL~~la~  119 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTV-------------SHVSDIVG----------------PDGVVYAVEFSPRSMRDLLNLAK  119 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHH-------------HHHHHHHT----------------TTSEEEEEESSHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEecccCCCcc-------------chhhhccC----------------CCCcEEEEEecchhHHHHHHHhc
Confidence            44689999999999999998             78877555                46789999999987766655554


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                               +.    +++-.+-.|+..+.   .--+.+|+|++.-.  .-....-++.++...|
T Consensus       120 -------------------------~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fL  168 (229)
T PF01269_consen  120 -------------------------KR----PNIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFL  168 (229)
T ss_dssp             -------------------------HS----TTEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHE
T ss_pred             -------------------------cC----CceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhc
Confidence                                     11    36777788887652   11348999986322  1223345677888899


Q ss_pred             cCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec
Q psy1420         196 KPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       196 kpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      |+||.++++--..            .+-.+.|++.||++.+..++.
T Consensus       169 k~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le  214 (229)
T PF01269_consen  169 KPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE  214 (229)
T ss_dssp             EEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T
T ss_pred             cCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC
Confidence            9999988764222            555677888999998888873

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.99  E-value=3.4e-05  Score=69.07  Aligned_cols=177  Identities=15%  Similarity=0.174  Sum_probs=95.7

Q ss_pred             hHHHHHhhhhhccccch--hhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMN--DAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      -+.++|+.+.+.+....  ..-.+.-.+.+.+.+.+.+.+.++.+|+|.+||+|.+.             ..+..    .
T Consensus         5 ~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL-------------~~~~~----~   67 (311)
T PF02384_consen    5 ILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFL-------------VAAME----Y   67 (311)
T ss_dssp             HHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHH-------------HHHHH----H
T ss_pred             HHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHH-------------HHHHH----h
Confidence            34566666655552211  00111113345567777778888889999999999976             33332    1


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                      +....      .+.....++|+|+++.+...+..++.                         -.+.......+...|...
T Consensus        68 i~~~~------~~~~~~~i~G~ei~~~~~~la~~nl~-------------------------l~~~~~~~~~i~~~d~l~  116 (311)
T PF02384_consen   68 IKEKR------NKIKEINIYGIEIDPEAVALAKLNLL-------------------------LHGIDNSNINIIQGDSLE  116 (311)
T ss_dssp             HHTCH------HHHCCEEEEEEES-HHHHHHHHHHHH-------------------------HTTHHCBGCEEEES-TTT
T ss_pred             hcccc------cccccceeEeecCcHHHHHHHHhhhh-------------------------hhcccccccccccccccc
Confidence            10000      00135679999999999988877654                         112221123466677554


Q ss_pred             CCCC--CCceeEEeeeehhhcc--c-------------------cHHHHHHHHHHhccCCcEEEEEecCH--------HH
Q psy1420         162 LPIE--SDSYSAYTIAFGIRNV--T-------------------RIDKALSEAYRVLKPGGRFLCLEFSH--------EE  210 (241)
Q Consensus       162 ~~~~--~~~~D~V~~~~~l~~~--~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~  210 (241)
                      .+..  ..+||+|+++--+...  .                   ..-.++..+.+.|++||++.++....        ..
T Consensus       117 ~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~  196 (311)
T PF02384_consen  117 NDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKK  196 (311)
T ss_dssp             SHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHH
T ss_pred             ccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHH
Confidence            4432  4689999987322111  0                   11257888999999999977654332        56


Q ss_pred             HHHHHHHCCCceEEEEEec
Q psy1420         211 FKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       211 ~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++.|-+.+. +..+..+.
T Consensus       197 iR~~ll~~~~-i~aVI~Lp  214 (311)
T PF02384_consen  197 IRKYLLENGY-IEAVISLP  214 (311)
T ss_dssp             HHHHHHHHEE-EEEEEE--
T ss_pred             HHHHHHhhch-hhEEeecc
Confidence            7666665533 44444443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.98  E-value=5e-05  Score=69.99  Aligned_cols=132  Identities=13%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+... +.++||++||+|.++             ..+..                   ...+++++|.++.+++.
T Consensus       197 ~~v~~~~~~~-~~~vLDl~~G~G~~s-------------l~la~-------------------~~~~v~~vE~~~~ai~~  243 (362)
T PRK05031        197 EWALDATKGS-KGDLLELYCGNGNFT-------------LALAR-------------------NFRRVLATEISKPSVAA  243 (362)
T ss_pred             HHHHHHhhcC-CCeEEEEeccccHHH-------------HHHHh-------------------hCCEEEEEECCHHHHHH
Confidence            3344443322 347999999999998             43333                   24579999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC--------------CCceeEEeeee
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE--------------SDSYSAYTIAF  176 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~--------------~~~~D~V~~~~  176 (241)
                      +++++.                         ..++.  +++++.+|+... + ..              ..+||+|+..=
T Consensus       244 a~~N~~-------------------------~~~~~--~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP  296 (362)
T PRK05031        244 AQYNIA-------------------------ANGID--NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP  296 (362)
T ss_pred             HHHHHH-------------------------HhCCC--cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC
Confidence            999987                         44543  678888887652 1 10              12589988532


Q ss_pred             hhhccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420         177 GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       177 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      - +. .-..+.+..+.   +|++.++++--..   +++..+. + ||++.++..+.+-
T Consensus       297 P-R~-G~~~~~l~~l~---~~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v~~~DmF  347 (362)
T PRK05031        297 P-RA-GLDDETLKLVQ---AYERILYISCNPETLCENLETLS-Q-THKVERFALFDQF  347 (362)
T ss_pred             C-CC-CCcHHHHHHHH---ccCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEEEEcccC
Confidence            1 10 11134444444   3677766643322   5555544 3 9999888877543

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.94  E-value=8.7e-05  Score=68.18  Aligned_cols=132  Identities=10%  Similarity=0.045  Sum_probs=82.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.+...+ .++||++||+|.++             ..+..                   ....++++|+++.+++
T Consensus       187 ~~~v~~~~~~~~-~~vlDl~~G~G~~s-------------l~la~-------------------~~~~v~~vE~~~~av~  233 (353)
T TIGR02143       187 LEWACEVTQGSK-GDLLELYCGNGNFS-------------LALAQ-------------------NFRRVLATEIAKPSVN  233 (353)
T ss_pred             HHHHHHHhhcCC-CcEEEEeccccHHH-------------HHHHH-------------------hCCEEEEEECCHHHHH
Confidence            444455544323 47999999999998             43333                   2357999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-----------C-----CCceeEEeee
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-----------E-----SDSYSAYTIA  175 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~-----~~~~D~V~~~  175 (241)
                      .+++++.                         ..++.  +++++++|+...-.           .     ...+|+|+..
T Consensus       234 ~a~~n~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lD  286 (353)
T TIGR02143       234 AAQYNIA-------------------------ANNID--NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVD  286 (353)
T ss_pred             HHHHHHH-------------------------HcCCC--cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEEC
Confidence            9999987                         44544  57888888765210           0     1137888753


Q ss_pred             ehhhccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecC
Q psy1420         176 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       176 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      =- +. .-..++++.+.   +|++.++++--..   +++..+.  .||++.++..+.+
T Consensus       287 PP-R~-G~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~--~~Y~l~~v~~~Dm  337 (353)
T TIGR02143       287 PP-RA-GLDPDTCKLVQ---AYERILYISCNPETLKANLEQLS--ETHRVERFALFDQ  337 (353)
T ss_pred             CC-CC-CCcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHHh--cCcEEEEEEEccc
Confidence            21 11 11134444443   4777777654333   5665544  3499888887754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.91  E-value=9.4e-05  Score=62.11  Aligned_cols=117  Identities=12%  Similarity=0.093  Sum_probs=73.5

Q ss_pred             HHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          30 LWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        30 ~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..++.+...+. .-++.++||++||+|..+             ..++.        .          ....++++|.++.
T Consensus        35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lg-------------lea~s--------r----------ga~~v~~vE~~~~   83 (189)
T TIGR00095        35 VVRELFFNILRPEIQGAHLLDVFAGSGLLG-------------EEALS--------R----------GAKVAFLEEDDRK   83 (189)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCcHHH-------------HHHHh--------C----------CCCEEEEEeCCHH
Confidence            34444444442 235779999999999988             43333        1          2347999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C--CCCceeEEeeeehhhccccH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I--ESDSYSAYTIAFGIRNVTRI  184 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~--~~~~~D~V~~~~~l~~~~~~  184 (241)
                      +++.++++++                         ..++. .++++++.|+... . .  ....+|+|+..--... ...
T Consensus        84 a~~~~~~N~~-------------------------~~~~~-~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~-~~~  136 (189)
T TIGR00095        84 ANQTLKENLA-------------------------LLKSG-EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN-GAL  136 (189)
T ss_pred             HHHHHHHHHH-------------------------HhCCc-ccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC-CcH
Confidence            9999999988                         44543 3678888887432 1 1  1224788876432221 223


Q ss_pred             HHHHHHHH--HhccCCcEEEEE
Q psy1420         185 DKALSEAY--RVLKPGGRFLCL  204 (241)
Q Consensus       185 ~~~l~~~~--~~LkpgG~l~i~  204 (241)
                      .+.+..+.  .+|+++|.+++-
T Consensus       137 ~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       137 QALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             HHHHHHHHHCCCCCCCeEEEEE
Confidence            44454443  368888877653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.90  E-value=7.7e-05  Score=68.22  Aligned_cols=148  Identities=14%  Similarity=0.141  Sum_probs=100.6

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...++|-+|.|.|.-.             ++++.        .|         ...+++.+|.+|.|++.+++...    
T Consensus       289 ~a~~vLvlGGGDGLAl-------------Rellk--------yP---------~~~qI~lVdLDP~miela~~~~v----  334 (508)
T COG4262         289 GARSVLVLGGGDGLAL-------------RELLK--------YP---------QVEQITLVDLDPRMIELASHATV----  334 (508)
T ss_pred             ccceEEEEcCCchHHH-------------HHHHh--------CC---------CcceEEEEecCHHHHHHhhhhhH----
Confidence            3457999999999877             55554        22         25689999999999999985432    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhcccc-----HHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~-----~~~~l~~~~~~Lk  196 (241)
                                      ++......+.+++++++..|+.+- ....+.||.|+....=-+-+.     ...+-..+.+.|+
T Consensus       335 ----------------lr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~  398 (508)
T COG4262         335 ----------------LRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA  398 (508)
T ss_pred             ----------------hhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC
Confidence                            111112233446889988887653 344668999986331111111     1467778889999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe--cCceeEEEeeec
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL--TFGVVAIHSGFK  240 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~--~~~~~~~~~~~~  240 (241)
                      ++|.+++..-++       -.+..-++++||+..-+...  +||--++..+.+
T Consensus       399 e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~  451 (508)
T COG4262         399 ETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP  451 (508)
T ss_pred             cCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence            999998865444       45677889999988776655  678777766543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.88  E-value=0.00013  Score=65.03  Aligned_cols=110  Identities=14%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      +++ .+||.+|.|.|.++             +.++.    +             ....+++.+|+++..++.+++.....
T Consensus        75 ~~p-k~VLiiGgGdG~tl-------------Revlk----h-------------~~ve~i~~VEID~~Vi~~ar~~l~~~  123 (282)
T COG0421          75 PNP-KRVLIIGGGDGGTL-------------REVLK----H-------------LPVERITMVEIDPAVIELARKYLPEP  123 (282)
T ss_pred             CCC-CeEEEECCCccHHH-------------HHHHh----c-------------CCcceEEEEEcCHHHHHHHHHhccCc
Confidence            344 59999999999998             55554    1             13568999999999999999876621


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc----cHHHHHHHHHHhc
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVL  195 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~----~~~~~l~~~~~~L  195 (241)
                      .                       .+...++++++..|.... .-.+.+||+|++-..=..-+    --..+++.+++.|
T Consensus       124 ~-----------------------~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L  180 (282)
T COG0421         124 S-----------------------GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRAL  180 (282)
T ss_pred             c-----------------------cccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhc
Confidence            1                       011126889999996654 22234899999643222111    1268999999999


Q ss_pred             cCCcEEEEE
Q psy1420         196 KPGGRFLCL  204 (241)
Q Consensus       196 kpgG~l~i~  204 (241)
                      +|+|.++..
T Consensus       181 ~~~Gi~v~q  189 (282)
T COG0421         181 KEDGIFVAQ  189 (282)
T ss_pred             CCCcEEEEe
Confidence            999999886

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.87  E-value=0.00029  Score=63.89  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=76.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+...+.  ++..++|+|||.|.-+             ..++..    +...         .....++++|+|..+++
T Consensus        67 ~~~Ia~~i~--~~~~lIELGsG~~~Kt-------------~~LL~a----L~~~---------~~~~~Y~plDIS~~~L~  118 (319)
T TIGR03439        67 SSDIAASIP--SGSMLVELGSGNLRKV-------------GILLEA----LERQ---------KKSVDYYALDVSRSELQ  118 (319)
T ss_pred             HHHHHHhcC--CCCEEEEECCCchHHH-------------HHHHHH----HHhc---------CCCceEEEEECCHHHHH
Confidence            344544443  5668999999999877             444442    2111         02467999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CC--CCCceeEEee-eehhhccccH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PI--ESDSYSAYTI-AFGIRNVTRI  184 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~--~~~~~D~V~~-~~~l~~~~~~  184 (241)
                      .+.+.+.                         ....+.=.+.-+++|....    +-  ......+++. ..++.|++..
T Consensus       119 ~a~~~L~-------------------------~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~  173 (319)
T TIGR03439       119 RTLAELP-------------------------LGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP  173 (319)
T ss_pred             HHHHhhh-------------------------hccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH
Confidence            8887765                         1222211233366665432    21  1223455554 4588888765


Q ss_pred             --HHHHHHHHH-hccCCcEEEEE
Q psy1420         185 --DKALSEAYR-VLKPGGRFLCL  204 (241)
Q Consensus       185 --~~~l~~~~~-~LkpgG~l~i~  204 (241)
                        ..+|+.+++ .|+|||.|++.
T Consensus       174 ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       174 EAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEe
Confidence              488999999 99999998873

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.86  E-value=5.2e-05  Score=70.40  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=72.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||++||+|..+             ..++.    .             ....+++++|+++.+++.+++++.    
T Consensus        57 ~~~~vLDl~aGsG~~~-------------l~~a~----~-------------~~~~~V~a~Din~~Av~~a~~N~~----  102 (382)
T PRK04338         57 PRESVLDALSASGIRG-------------IRYAL----E-------------TGVEKVTLNDINPDAVELIKKNLE----  102 (382)
T ss_pred             CCCEEEECCCcccHHH-------------HHHHH----H-------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence            3468999999999988             44432    0             123479999999999999999987    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                           ..++.  ++.+.+.|+...-...++||+|++.-    ...+..++..+.+.+++||.++
T Consensus       103 ---------------------~N~~~--~~~v~~~Da~~~l~~~~~fD~V~lDP----~Gs~~~~l~~al~~~~~~gily  155 (382)
T PRK04338        103 ---------------------LNGLE--NEKVFNKDANALLHEERKFDVVDIDP----FGSPAPFLDSAIRSVKRGGLLC  155 (382)
T ss_pred             ---------------------HhCCC--ceEEEhhhHHHHHhhcCCCCEEEECC----CCCcHHHHHHHHHHhcCCCEEE
Confidence                                 44444  45678888765321135699998642    1345678888778889999999


Q ss_pred             EE
Q psy1420         203 CL  204 (241)
Q Consensus       203 i~  204 (241)
                      ++
T Consensus       156 vS  157 (382)
T PRK04338        156 VT  157 (382)
T ss_pred             EE
Confidence            86

>KOG1269|consensus

Probab=97.82  E-value=3e-05  Score=71.44  Aligned_cols=109  Identities=22%  Similarity=0.287  Sum_probs=87.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++..++|+|||-|...             ..+..                  -....++++|.++.....+.....   
T Consensus       109 ~~~~~~~~~~~g~~~~~-------------~~i~~------------------f~~~~~~Gl~~n~~e~~~~~~~~~---  154 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPS-------------RYIAV------------------FKKAGVVGLDNNAYEAFRANELAK---  154 (364)
T ss_pred             cccccccccCcCcCchh-------------HHHHH------------------hccCCccCCCcCHHHHHHHHHHHH---
Confidence            56668999999999887             11111                  135789999999988887776655   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            +..+. ....+...++...|+++..||.+-+..+..+.++...++++++|++||||++
T Consensus       155 ----------------------~~~l~-~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~  211 (364)
T KOG1269|consen  155 ----------------------KAYLD-NKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLF  211 (364)
T ss_pred             ----------------------HHHhh-hhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceE
Confidence                                  44444 3344578888899999999999999999999999999999999999999999


Q ss_pred             EEEecC
Q psy1420         202 LCLEFS  207 (241)
Q Consensus       202 ~i~~~~  207 (241)
                      ++.++.
T Consensus       212 i~~e~i  217 (364)
T KOG1269|consen  212 IVKEWI  217 (364)
T ss_pred             EeHHHH
Confidence            985543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.82  E-value=6.6e-05  Score=63.75  Aligned_cols=100  Identities=16%  Similarity=0.265  Sum_probs=68.4

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|+|.-||-|.++             ..++.    .             .....++++|++|.+.+.+.+++.  
T Consensus        99 v~~~e~VlD~faGIG~f~-------------l~~ak----~-------------~~~~~V~A~d~Np~a~~~L~~Ni~--  146 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFS-------------LPIAK----H-------------GKAKRVYAVDLNPDAVEYLKENIR--  146 (200)
T ss_dssp             --TT-EEEETT-TTTTTH-------------HHHHH----H-------------T-SSEEEEEES-HHHHHHHHHHHH--
T ss_pred             CCcceEEEEccCCccHHH-------------HHHhh----h-------------cCccEEEEecCCHHHHHHHHHHHH--
Confidence            457889999999999999             33322    0             135679999999999999999998  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                             ..++. .++..+++|...... ...+|.|+++..-    ....+|..+.+++++||.
T Consensus       147 -----------------------lNkv~-~~i~~~~~D~~~~~~-~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~  197 (200)
T PF02475_consen  147 -----------------------LNKVE-NRIEVINGDAREFLP-EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGI  197 (200)
T ss_dssp             -----------------------HTT-T-TTEEEEES-GGG----TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEE
T ss_pred             -----------------------HcCCC-CeEEEEcCCHHHhcC-ccccCEEEECChH----HHHHHHHHHHHHhcCCcE
Confidence                                   66666 678899999988754 6789999875422    233578888899999987


Q ss_pred             E
Q psy1420         201 F  201 (241)
Q Consensus       201 l  201 (241)
                      +
T Consensus       198 i  198 (200)
T PF02475_consen  198 I  198 (200)
T ss_dssp             E
T ss_pred             E
Confidence            6

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.81  E-value=0.00028  Score=52.67  Aligned_cols=83  Identities=30%  Similarity=0.441  Sum_probs=56.7

Q ss_pred             CCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC--CCCCC-CceeEEee
Q psy1420          98 QFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE--LPIES-DSYSAYTI  174 (241)
Q Consensus        98 ~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~V~~  174 (241)
                      ..++++|+++.++........                         ....  ..+.+...+...  .++.. ..+|++ +
T Consensus        73 ~~~~~~d~~~~~~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~-~  124 (257)
T COG0500          73 AYVVGVDLSPEMLALARARAE-------------------------GAGL--GLVDFVVADALGGVLPFEDSASFDLV-I  124 (257)
T ss_pred             ceEEEEeCCHHHHHHHHhhhh-------------------------hcCC--CceEEEEeccccCCCCCCCCCceeEE-e
Confidence            367789999999988444432                         1000  014666777665  56655 489999 5


Q ss_pred             eehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         175 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       175 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      .....+..++...+.++.+.++|+|.+++.....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            5544443338899999999999999998876554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.80  E-value=0.00039  Score=59.28  Aligned_cols=124  Identities=16%  Similarity=0.150  Sum_probs=82.6

Q ss_pred             EEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcccc
Q psy1420          47 LLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS  126 (241)
Q Consensus        47 vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~  126 (241)
                      |+|+||..|+..             ..++.       ..          ...+++++|+++.-++.|++++.        
T Consensus         1 vaDIGtDHgyLp-------------i~L~~-------~~----------~~~~~ia~DI~~gpL~~A~~~i~--------   42 (205)
T PF04816_consen    1 VADIGTDHGYLP-------------IYLLK-------NG----------KAPKAIAVDINPGPLEKAKENIA--------   42 (205)
T ss_dssp             EEEET-STTHHH-------------HHHHH-------TT----------SEEEEEEEESSHHHHHHHHHHHH--------
T ss_pred             CceeccchhHHH-------------HHHHh-------cC----------CCCEEEEEeCCHHHHHHHHHHHH--------
Confidence            689999999987             43333       11          34579999999999999999998        


Q ss_pred             ccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                                       +.++. .+++++.+|-.+ ++. .+..|.|+.+..=.  .-+.+.|+.....++....|++.-
T Consensus        43 -----------------~~~l~-~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG--~lI~~ILe~~~~~~~~~~~lILqP  101 (205)
T PF04816_consen   43 -----------------KYGLE-DRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG--ELIIEILEAGPEKLSSAKRLILQP  101 (205)
T ss_dssp             -----------------HTT-T-TTEEEEE-SGGGG--G-GG---EEEEEEE-H--HHHHHHHHHTGGGGTT--EEEEEE
T ss_pred             -----------------HcCCc-ccEEEEECCcccccCC-CCCCCEEEEecCCH--HHHHHHHHhhHHHhccCCeEEEeC
Confidence                             77766 689999999544 332 22368877654221  234567777777776666777765


Q ss_pred             cCH-HHHHHHHHHCCCceEEEEEec
Q psy1420         206 FSH-EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       206 ~~~-~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      .+. ..++.+|.+.||.+.+..-+.
T Consensus       102 ~~~~~~LR~~L~~~gf~I~~E~lv~  126 (205)
T PF04816_consen  102 NTHAYELRRWLYENGFEIIDEDLVE  126 (205)
T ss_dssp             SS-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCChHHHHHHHHHCCCEEEEeEEEe
Confidence            555 899999999999998877664

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PLN02823 spermine synthase

Probab=97.78  E-value=9.7e-05  Score=67.49  Aligned_cols=109  Identities=14%  Similarity=0.137  Sum_probs=73.4

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||.+|+|.|..+             +.++.        .         ....+++.+|+++.+++.+++.....  
T Consensus       103 ~pk~VLiiGgG~G~~~-------------re~l~--------~---------~~~~~v~~VEiD~~vv~lar~~~~~~--  150 (336)
T PLN02823        103 NPKTVFIMGGGEGSTA-------------REVLR--------H---------KTVEKVVMCDIDQEVVDFCRKHLTVN--  150 (336)
T ss_pred             CCCEEEEECCCchHHH-------------HHHHh--------C---------CCCCeEEEEECCHHHHHHHHHhcccc--
Confidence            3458999999999877             43333        0         12457999999999999998775400  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc--ccc----HHHHHH-HHHHh
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN--VTR----IDKALS-EAYRV  194 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~--~~~----~~~~l~-~~~~~  194 (241)
                                           ...+.+++++++..|+... ....++||+|++-..=..  .+.    -..+++ .+.+.
T Consensus       151 ---------------------~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~  209 (336)
T PLN02823        151 ---------------------REAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPK  209 (336)
T ss_pred             ---------------------cccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHh
Confidence                                 1112336889999886653 333568999997531100  000    135777 88999


Q ss_pred             ccCCcEEEEE
Q psy1420         195 LKPGGRFLCL  204 (241)
Q Consensus       195 LkpgG~l~i~  204 (241)
                      |+|||.+++.
T Consensus       210 L~p~Gvlv~q  219 (336)
T PLN02823        210 LNPGGIFVTQ  219 (336)
T ss_pred             cCCCcEEEEe
Confidence            9999998764

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=0.00058  Score=62.85  Aligned_cols=136  Identities=18%  Similarity=0.280  Sum_probs=93.7

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+++.+|.+|||..+++|.=+             .+++..|.    .           ....+++.|.++..++...
T Consensus       148 ~a~~L~p~pge~VlD~cAAPGGKT-------------thla~~~~----~-----------~~~iV~A~D~~~~Rl~~l~  199 (355)
T COG0144         148 PALVLDPKPGERVLDLCAAPGGKT-------------THLAELME----N-----------EGAIVVAVDVSPKRLKRLR  199 (355)
T ss_pred             HHHHcCCCCcCEEEEECCCCCCHH-------------HHHHHhcC----C-----------CCceEEEEcCCHHHHHHHH
Confidence            345678899999999999999887             45544211    1           1344699999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeee------ehhhcccc--
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIA------FGIRNVTR--  183 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~------~~l~~~~~--  183 (241)
                      .++.                         +.|+.  ++.....|....+   ...++||.|+.-      .+++.-++  
T Consensus       200 ~nl~-------------------------RlG~~--nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~  252 (355)
T COG0144         200 ENLK-------------------------RLGVR--NVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVK  252 (355)
T ss_pred             HHHH-------------------------HcCCC--ceEEEecccccccccccccCcCcEEEECCCCCCCcccccCcccc
Confidence            9999                         66766  4677777766543   112359999842      23321111  


Q ss_pred             --------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420         184 --------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY  225 (241)
Q Consensus       184 --------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~  225 (241)
                                    -.++|..+.+.|||||+|+-++-+.      +.+...+++. +|..+..
T Consensus       253 ~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~  315 (355)
T COG0144         253 WRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPV  315 (355)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence                          1478899999999999999877555      4555666665 5655543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.77  E-value=0.00013  Score=63.70  Aligned_cols=130  Identities=14%  Similarity=0.166  Sum_probs=83.6

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||-+|.|.|..+             ..++.        .         ....+++.+|+++..++.+++.....  
T Consensus        76 ~p~~VLiiGgG~G~~~-------------~ell~--------~---------~~~~~i~~VEiD~~Vv~~a~~~f~~~--  123 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTA-------------RELLK--------H---------PPVESITVVEIDPEVVELARKYFPEF--  123 (246)
T ss_dssp             ST-EEEEEESTTSHHH-------------HHHTT--------S---------TT-SEEEEEES-HHHHHHHHHHTHHH--
T ss_pred             CcCceEEEcCCChhhh-------------hhhhh--------c---------CCcceEEEEecChHHHHHHHHhchhh--
Confidence            4569999999999888             44443        1         12468999999999999998865511  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCC-ceeEEeeeehhhcccc----HHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESD-SYSAYTIAFGIRNVTR----IDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~-~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lk  196 (241)
                                           .....+++++++..|.... .-..+ +||+|+.-..-...+.    -..+++.+.+.|+
T Consensus       124 ---------------------~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~  182 (246)
T PF01564_consen  124 ---------------------SEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK  182 (246)
T ss_dssp             ---------------------HTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE
T ss_pred             ---------------------ccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC
Confidence                                 1112336899999997543 11233 8999996433211111    2589999999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEE
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~  226 (241)
                      |||.+++...+.       ..+.+.+++... .+...
T Consensus       183 ~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~  218 (246)
T PF01564_consen  183 PDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPY  218 (246)
T ss_dssp             EEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEE
T ss_pred             CCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEE
Confidence            999998864222       455566666655 44443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.74  E-value=0.00044  Score=63.55  Aligned_cols=130  Identities=15%  Similarity=0.265  Sum_probs=79.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.++..++ ++||+=||.|+++             ..++.                   ...+++|+|.++.+
T Consensus       184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fs-------------l~la~-------------------~~~~V~gvE~~~~a  230 (352)
T PF05958_consen  184 KLYEQALEWLDLSKG-DVLDLYCGVGTFS-------------LPLAK-------------------KAKKVIGVEIVEEA  230 (352)
T ss_dssp             HHHHHHHHHCTT-TT-EEEEES-TTTCCH-------------HHHHC-------------------CSSEEEEEES-HHH
T ss_pred             HHHHHHHHHhhcCCC-cEEEEeecCCHHH-------------HHHHh-------------------hCCeEEEeeCCHHH
Confidence            345667777777666 8999999999999             44444                   46789999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----------------CCCCceeEEe
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----------------IESDSYSAYT  173 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------------~~~~~~D~V~  173 (241)
                      ++.|+.++.                         ..++.  ++++..+++++..                .....+|+|+
T Consensus       231 v~~A~~Na~-------------------------~N~i~--n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vi  283 (352)
T PF05958_consen  231 VEDARENAK-------------------------LNGID--NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVI  283 (352)
T ss_dssp             HHHHHHHHH-------------------------HTT----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEE
T ss_pred             HHHHHHHHH-------------------------HcCCC--cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEE
Confidence            999999998                         55655  6778776654331                1123578886


Q ss_pred             ee---ehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEecC
Q psy1420         174 IA---FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       174 ~~---~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      .-   .++.     ..+++.+.   ++. +++-++-.+    +++..+ . .||++.++..+.+
T Consensus       284 lDPPR~G~~-----~~~~~~~~---~~~-~ivYvSCnP~tlaRDl~~L-~-~~y~~~~v~~~Dm  336 (352)
T PF05958_consen  284 LDPPRAGLD-----EKVIELIK---KLK-RIVYVSCNPATLARDLKIL-K-EGYKLEKVQPVDM  336 (352)
T ss_dssp             E---TT-SC-----HHHHHHHH---HSS-EEEEEES-HHHHHHHHHHH-H-CCEEEEEEEEE-S
T ss_pred             EcCCCCCch-----HHHHHHHh---cCC-eEEEEECCHHHHHHHHHHH-h-hcCEEEEEEEeec
Confidence            41   1111     24444443   334 444444444    666554 3 4999988887743

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00055  Score=58.23  Aligned_cols=119  Identities=22%  Similarity=0.296  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|+|+|+.+|.|+          ||+.+.+.                   ....++++|+.|.             
T Consensus        44 ~~~~~ViDLGAAPGgWs----------Qva~~~~~-------------------~~~~ivavDi~p~-------------   81 (205)
T COG0293          44 KPGMVVVDLGAAPGGWS----------QVAAKKLG-------------------AGGKIVAVDILPM-------------   81 (205)
T ss_pred             cCCCEEEEcCCCCCcHH----------HHHHHHhC-------------------CCCcEEEEECccc-------------
Confidence            67899999999999999          33343333                   3455999998543             


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeeh-----hhcccc-----
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFG-----IRNVTR-----  183 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~-----l~~~~~-----  183 (241)
                                            ++ +  +++.++++|+...+        ....++|+|++-..     .+...+     
T Consensus        82 ----------------------~~-~--~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~  136 (205)
T COG0293          82 ----------------------KP-I--PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMY  136 (205)
T ss_pred             ----------------------cc-C--CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHH
Confidence                                  11 1  35788888887754        23445799986432     222222     


Q ss_pred             -HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHC--CCceEEEEE
Q psy1420         184 -IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESA--GFQYVTYEN  227 (241)
Q Consensus       184 -~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~--Gf~~~~~~~  227 (241)
                       -..++.-+..+|+|||.+++-.|..++..+.+...  .|+.++...
T Consensus       137 L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~K  183 (205)
T COG0293         137 LCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFK  183 (205)
T ss_pred             HHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEec
Confidence             24677778889999999999888875555554432  366665543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.70  E-value=0.00075  Score=61.65  Aligned_cols=118  Identities=21%  Similarity=0.302  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+|.+|+|.=+|-|.++             ..++.                  .....++++|++|.+.+.+++++.   
T Consensus       187 ~~GE~V~DmFAGVGpfs-------------i~~Ak------------------~g~~~V~A~diNP~A~~~L~eNi~---  232 (341)
T COG2520         187 KEGETVLDMFAGVGPFS-------------IPIAK------------------KGRPKVYAIDINPDAVEYLKENIR---  232 (341)
T ss_pred             cCCCEEEEccCCcccch-------------hhhhh------------------cCCceEEEEecCHHHHHHHHHHHH---
Confidence            34889999999999999             33333                  123349999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            .+++. +.+..+++|..........+|.|+++.    ..+-.+++..+.+.+++||.+
T Consensus       233 ----------------------LN~v~-~~v~~i~gD~rev~~~~~~aDrIim~~----p~~a~~fl~~A~~~~k~~g~i  285 (341)
T COG2520         233 ----------------------LNKVE-GRVEPILGDAREVAPELGVADRIIMGL----PKSAHEFLPLALELLKDGGII  285 (341)
T ss_pred             ----------------------hcCcc-ceeeEEeccHHHhhhccccCCEEEeCC----CCcchhhHHHHHHHhhcCcEE
Confidence                                  66666 568899999998865547899999744    334467788888889999999


Q ss_pred             EEEecCH---------HHHHHHHHHCCC
Q psy1420         202 LCLEFSH---------EEFKSMIESAGF  220 (241)
Q Consensus       202 ~i~~~~~---------~~~~~~l~~~Gf  220 (241)
                      -+.++.+         ..++....+.|+
T Consensus       286 Hyy~~~~e~~~~~~~~~~i~~~~~~~~~  313 (341)
T COG2520         286 HYYEFVPEDDIEERPEKRIKSAARKGGY  313 (341)
T ss_pred             EEEeccchhhcccchHHHHHHHHhhccC
Confidence            8877666         455566666664

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=0.00051  Score=64.79  Aligned_cols=140  Identities=13%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..+.+...+++...++.+++|+=||.|+++             ..+++                   ...+++|+|+++.
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~-------------l~lA~-------------------~~~~V~gvEi~~~  326 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFG-------------LPLAK-------------------RVKKVHGVEISPE  326 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhh-------------hhhcc-------------------cCCEEEEEecCHH
Confidence            345677777778788889999999999999             44444                   5789999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRID  185 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~  185 (241)
                      +++.|++++.                         ..++.  ++.+..++++.....   ...+|.|+..--=.-  -..
T Consensus       327 aV~~A~~NA~-------------------------~n~i~--N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~  377 (432)
T COG2265         327 AVEAAQENAA-------------------------ANGID--NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADR  377 (432)
T ss_pred             HHHHHHHHHH-------------------------HcCCC--cEEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CCH
Confidence            9999999999                         66666  589999998876432   347899984100000  002


Q ss_pred             HHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEecC
Q psy1420         186 KALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      .+++.+. .++|..+++++--..  ..=...|.+.|+.+.++..+.+
T Consensus       378 ~~lk~l~-~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~Dm  423 (432)
T COG2265         378 EVLKQLA-KLKPKRIVYVSCNPATLARDLAILASTGYEIERVQPFDM  423 (432)
T ss_pred             HHHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHHhCCeEEEEEEEecc
Confidence            3444443 457888888754333  3334567888888777776643

>KOG1500|consensus

Probab=97.67  E-value=0.00018  Score=65.21  Aligned_cols=102  Identities=18%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .-.+..|||+|||+|-++             .         .+.+.         ...++++++. ..|.+.|++.++  
T Consensus       175 DF~~kiVlDVGaGSGILS-------------~---------FAaqA---------GA~~vYAvEA-S~MAqyA~~Lv~--  220 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILS-------------F---------FAAQA---------GAKKVYAVEA-SEMAQYARKLVA--  220 (517)
T ss_pred             ccCCcEEEEecCCccHHH-------------H---------HHHHh---------CcceEEEEeh-hHHHHHHHHHHh--
Confidence            346778999999999887             1         11111         3567999985 578888888877  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee---ehhhccccHHHHHHHHHHhccC
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKP  197 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~---~~l~~~~~~~~~l~~~~~~Lkp  197 (241)
                                             ...+. +++.++.+.+++..++ ++.|++++-   ..+.+ ++....--.+++.|||
T Consensus       221 -----------------------~N~~~-~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~N-ERMLEsYl~Ark~l~P  274 (517)
T KOG1500|consen  221 -----------------------SNNLA-DRITVIPGKIEDIELP-EKVDVIISEPMGYMLVN-ERMLESYLHARKWLKP  274 (517)
T ss_pred             -----------------------cCCcc-ceEEEccCccccccCc-hhccEEEeccchhhhhh-HHHHHHHHHHHhhcCC
Confidence                                   44444 7899999999998775 578999863   11211 2222333445699999


Q ss_pred             CcEEE
Q psy1420         198 GGRFL  202 (241)
Q Consensus       198 gG~l~  202 (241)
                      .|.++
T Consensus       275 ~GkMf  279 (517)
T KOG1500|consen  275 NGKMF  279 (517)
T ss_pred             CCccc
Confidence            99987

>KOG2798|consensus

Probab=97.67  E-value=0.00081  Score=60.44  Aligned_cols=77  Identities=23%  Similarity=0.410  Sum_probs=59.4

Q ss_pred             eeEEecccCCCC---CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE-------------------EecCHH
Q psy1420         152 LRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC-------------------LEFSHE  209 (241)
Q Consensus       152 ~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i-------------------~~~~~~  209 (241)
                      ++...+|+.+.-   ...+.||+|+.++.+....+.-..++.++++|||||+.+=                   ++++-+
T Consensus       240 fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~e  319 (369)
T KOG2798|consen  240 FSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLE  319 (369)
T ss_pred             ccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHH
Confidence            444557766542   2235799999999998888899999999999999999762                   122239


Q ss_pred             HHHHHHHHCCCceEEEEEe
Q psy1420         210 EFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       210 ~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++..++...||++++.+.+
T Consensus       320 dl~~v~~~~GF~~~ke~~I  338 (369)
T KOG2798|consen  320 DLKRVASHRGFEVEKERGI  338 (369)
T ss_pred             HHHHHHHhcCcEEEEeeee
Confidence            9999999999999887744

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=97.67  E-value=7.8e-06  Score=70.95  Aligned_cols=90  Identities=24%  Similarity=0.374  Sum_probs=15.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +||++++-+..+.....   +++.+|..|+..++|.+|.++.++..+|+||++|.......-++...+.+.+.+.+.   
T Consensus       144 kPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~---  217 (233)
T PF01209_consen  144 KPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVE---  217 (233)
T ss_dssp             EEEEEEEEEEEEB-SSH---HHHHHHHH----------------------------------------------------
T ss_pred             CCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            56666444444555554   778999999999999999999999999999999988888888887777777777776   


Q ss_pred             Cccccccccceecceeeeeeccc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDK  144 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~  144 (241)
                             ++++.+|+..++...|
T Consensus       218 -------~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  218 -------YRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             -----------------------
T ss_pred             -------ccccccccccccccCC
Confidence                   7888888888776543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.66  E-value=7.8e-05  Score=63.54  Aligned_cols=123  Identities=19%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+++.++..++..++|+|||.|...             .+.+-    .             ......+|+|+.+...+
T Consensus        31 ~~~il~~~~l~~~dvF~DlGSG~G~~v-------------~~aal----~-------------~~~~~~~GIEi~~~~~~   80 (205)
T PF08123_consen   31 VSKILDELNLTPDDVFYDLGSGVGNVV-------------FQAAL----Q-------------TGCKKSVGIEILPELHD   80 (205)
T ss_dssp             HHHHHHHTT--TT-EEEEES-TTSHHH-------------HHHHH----H-------------H--SEEEEEE-SHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEECCCCCCHHH-------------HHHHH----H-------------cCCcEEEEEEechHHHH
Confidence            344556777888999999999999977             33322    0             12345899999999887


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC---CceeEEeeeehhhccccHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      .+......+.                  ......+....++.+..+|+.+.+...   ...|+|+++... .-++....|
T Consensus        81 ~a~~~~~~~~------------------~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L  141 (205)
T PF08123_consen   81 LAEELLEELK------------------KRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLAL  141 (205)
T ss_dssp             HHHHHHHHHH------------------HHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHH
T ss_pred             HHHHHHHHHH------------------HHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc-cCHHHHHHH
Confidence            7765443100                  000112232246788888877653211   236899987654 234566777


Q ss_pred             HHHHHhccCCcEEEE
Q psy1420         189 SEAYRVLKPGGRFLC  203 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i  203 (241)
                      .+....||||.+++-
T Consensus       142 ~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  142 AELLLELKPGARIIS  156 (205)
T ss_dssp             HHHHTTS-TT-EEEE
T ss_pred             HHHHhcCCCCCEEEE
Confidence            888888999988764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.65  E-value=7.4e-05  Score=67.06  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+.+.++..++|++||.|..+             ..++..++                ....++|+|.++.++
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS-------------~~il~~~~----------------~~g~VigiD~D~~al   57 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHS-------------RAILERLG----------------PKGRLIAIDRDPDAI   57 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHH-------------HHHHHhCC----------------CCCEEEEEcCCHHHH
Confidence            4566777788888899999999999999             44444110                246899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCC--CceeEEeeeehhh
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IES--DSYSAYTIAFGIR  179 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~--~~~D~V~~~~~l~  179 (241)
                      +.+++++.                         +   . +++.+++.|+.++.  .+.  .++|.|++..+..
T Consensus        58 ~~ak~~L~-------------------------~---~-~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvS  101 (296)
T PRK00050         58 AAAKDRLK-------------------------P---F-GRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGVS  101 (296)
T ss_pred             HHHHHhhc-------------------------c---C-CcEEEEeCCHHHHHHHHHcCCCccCEEEECCCcc
Confidence            99998775                         2   1 36777888777652  111  2688888665543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.65  E-value=5.2e-05  Score=63.45  Aligned_cols=140  Identities=11%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             HHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          30 LWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        30 ~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      ..++.+...+..  -++.++||+=||+|..+             ...+.       +           ...+++.+|.++
T Consensus        27 rvrealFniL~~~~~~g~~vLDLFaGSGalG-------------lEALS-------R-----------GA~~v~fVE~~~   75 (183)
T PF03602_consen   27 RVREALFNILQPRNLEGARVLDLFAGSGALG-------------LEALS-------R-----------GAKSVVFVEKNR   75 (183)
T ss_dssp             HHHHHHHHHHHCH-HTT-EEEETT-TTSHHH-------------HHHHH-------T-----------T-SEEEEEES-H
T ss_pred             HHHHHHHHHhcccccCCCeEEEcCCccCccH-------------HHHHh-------c-----------CCCeEEEEECCH
Confidence            455666666554  37889999999999988             43332       1           346899999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CC---CCCCceeEEeeeehhhcccc
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LP---IESDSYSAYTIAFGIRNVTR  183 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~~D~V~~~~~l~~~~~  183 (241)
                      ...+.+++++.                         +.+.. .+..++..|+.. ++   ....+||+|++.--......
T Consensus        76 ~a~~~i~~N~~-------------------------~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~  129 (183)
T PF03602_consen   76 KAIKIIKKNLE-------------------------KLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY  129 (183)
T ss_dssp             HHHHHHHHHHH-------------------------HHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHH
T ss_pred             HHHHHHHHHHH-------------------------HhCCC-cceeeeccCHHHHHHhhcccCCCceEEEECCCcccchH
Confidence            99999999998                         55555 357788888543 21   23578999997533322111


Q ss_pred             HHHHHHHHH--HhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         184 IDKALSEAY--RVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       184 ~~~~l~~~~--~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ..+.++.+.  .+|+++|.+++-......+..  .-.+|...+..+.
T Consensus       130 ~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~~~--~~~~~~~~~~r~y  174 (183)
T PF03602_consen  130 YEELLELLAENNLLNEDGLIIIEHSKKEDLPE--SPGNWELIKERKY  174 (183)
T ss_dssp             HHHHHHHHHHTTSEEEEEEEEEEEETTSSS-S--EETTEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEecCCCCCcc--CCCCEEEEEEecC
Confidence            466777776  689999988875433322211  1244655555544

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG0820|consensus

Probab=97.64  E-value=0.00021  Score=63.03  Aligned_cols=84  Identities=14%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+..+.+++..|||+|.|||+.+             ..++.                   ....++++|.++.|+.
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT-------------~~lLe-------------------~~kkVvA~E~Dprmva   94 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLT-------------VKLLE-------------------AGKKVVAVEIDPRMVA   94 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHH-------------HHHHH-------------------hcCeEEEEecCcHHHH
Confidence            466666777789999999999999999             66666                   5678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA  175 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~  175 (241)
                      ...++....|                         .. ..++++.+|+...+.+  .||.++++
T Consensus        95 el~krv~gtp-------------------------~~-~kLqV~~gD~lK~d~P--~fd~cVsN  130 (315)
T KOG0820|consen   95 ELEKRVQGTP-------------------------KS-GKLQVLHGDFLKTDLP--RFDGCVSN  130 (315)
T ss_pred             HHHHHhcCCC-------------------------cc-ceeeEEecccccCCCc--ccceeecc
Confidence            9998887221                         12 4688999999887654  47888863

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.63  E-value=0.00023  Score=59.96  Aligned_cols=63  Identities=19%  Similarity=0.333  Sum_probs=45.5

Q ss_pred             CCceeEEeeeehhhc-------cccHHHHHHHHHHhccCCcEEEEEecCH-----------------HHHHHHHHHCCCc
Q psy1420         166 SDSYSAYTIAFGIRN-------VTRIDKALSEAYRVLKPGGRFLCLEFSH-----------------EEFKSMIESAGFQ  221 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------~~~~~~l~~~Gf~  221 (241)
                      .+..|++.....-|.       -....++-..+++.|||||.+++.++..                 ..+....+.+||+
T Consensus       120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk  199 (238)
T COG4798         120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK  199 (238)
T ss_pred             CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence            445666665432221       2234788899999999999999988554                 7778889999999


Q ss_pred             eEEEEEe
Q psy1420         222 YVTYENL  228 (241)
Q Consensus       222 ~~~~~~~  228 (241)
                      +.-...+
T Consensus       200 l~aeS~i  206 (238)
T COG4798         200 LEAESEI  206 (238)
T ss_pred             eeeeehh
Confidence            8766655

>KOG3420|consensus

Probab=97.60  E-value=0.0001  Score=59.38  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=65.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +...+-...+.-.|.+++|+|||+|-.+             ....-         +         ....+.|+|+++.++
T Consensus        36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs-------------~a~sm---------~---------~~e~vlGfDIdpeAL   84 (185)
T KOG3420|consen   36 MLYTIHNTYGDIEGKKLKDLGCGCGMLS-------------IAFSM---------P---------KNESVLGFDIDPEAL   84 (185)
T ss_pred             HHHHHHhhhccccCcchhhhcCchhhhH-------------HHhhc---------C---------CCceEEeeecCHHHH
Confidence            3344444455567889999999999877             33321         1         356799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI  178 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l  178 (241)
                      +.+.++++                         ...+   +++++++|+..+....+.||.++.+--+
T Consensus        85 EIf~rNae-------------------------EfEv---qidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   85 EIFTRNAE-------------------------EFEV---QIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             HHHhhchH-------------------------Hhhh---hhheeeeeccchhccCCeEeeEEecCCC
Confidence            99999988                         4443   3688999998887667899999876444

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.60  E-value=8.6e-05  Score=61.28  Aligned_cols=60  Identities=23%  Similarity=0.343  Sum_probs=35.2

Q ss_pred             CceeEEeeeehhh-----------ccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420         167 DSYSAYTIAFGIR-----------NVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       167 ~~~D~V~~~~~l~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .++|+|+|-.+..           ...-....+.-+.+.|+|||.+++..+..   .++...++. .|+.+.+..
T Consensus        90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~-~F~~v~~~K  163 (181)
T PF01728_consen   90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR-CFSKVKIVK  163 (181)
T ss_dssp             CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH-HHHHEEEEE
T ss_pred             cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh-CCeEEEEEE
Confidence            6899999876322           11222456666778899999998876554   345555544 455555443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK04148 hypothetical protein; Provisional

Probab=97.57  E-value=0.00068  Score=53.97  Aligned_cols=107  Identities=12%  Similarity=0.048  Sum_probs=68.3

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCc-chhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDP-LANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      +.+.+.+...++.+++|+|||.|. .+             ..+..                   .+..++++|+++..++
T Consensus         6 ~~l~~~~~~~~~~kileIG~GfG~~vA-------------~~L~~-------------------~G~~ViaIDi~~~aV~   53 (134)
T PRK04148          6 EFIAENYEKGKNKKIVELGIGFYFKVA-------------KKLKE-------------------SGFDVIVIDINEKAVE   53 (134)
T ss_pred             HHHHHhcccccCCEEEEEEecCCHHHH-------------HHHHH-------------------CCCEEEEEECCHHHHH
Confidence            334455555566899999999985 44             22222                   4679999999999888


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccccHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      .++...                                  +.+...|..+.+.. -..+|+|.+.   +--+++...+-+
T Consensus        54 ~a~~~~----------------------------------~~~v~dDlf~p~~~~y~~a~liysi---rpp~el~~~~~~   96 (134)
T PRK04148         54 KAKKLG----------------------------------LNAFVDDLFNPNLEIYKNAKLIYSI---RPPRDLQPFILE   96 (134)
T ss_pred             HHHHhC----------------------------------CeEEECcCCCCCHHHHhcCCEEEEe---CCCHHHHHHHHH
Confidence            776442                                  46788998877543 3468888753   223344455555


Q ss_pred             HHHhccCCcEEEEEecCHHH
Q psy1420         191 AYRVLKPGGRFLCLEFSHEE  210 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~~~  210 (241)
                      +.+.+  |.-+++...+.+.
T Consensus        97 la~~~--~~~~~i~~l~~e~  114 (134)
T PRK04148         97 LAKKI--NVPLIIKPLSGEE  114 (134)
T ss_pred             HHHHc--CCCEEEEcCCCCC
Confidence            55543  4456666555443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.0033  Score=53.38  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +..+++.+||=+|+.+|++.             .++..+++                 ...+++++.|+...+.....+.
T Consensus        72 ~pi~~g~~VLYLGAasGTTv-------------SHVSDIv~-----------------~G~iYaVEfs~R~~reLl~~a~  121 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTV-------------SHVSDIVG-----------------EGRIYAVEFSPRPMRELLDVAE  121 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcH-------------hHHHhccC-----------------CCcEEEEEecchhHHHHHHHHH
Confidence            44589999999999999999             77777433                 4579999999998877776665


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                               +.    +++-.+-.|+..+.   .--+.+|+|+.--.  .-....-+..++..-|
T Consensus       122 -------------------------~R----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FL  170 (231)
T COG1889         122 -------------------------KR----PNIIPILEDARKPEKYRHLVEKVDVIYQDVA--QPNQAEILADNAEFFL  170 (231)
T ss_pred             -------------------------hC----CCceeeecccCCcHHhhhhcccccEEEEecC--CchHHHHHHHHHHHhc
Confidence                                     21    35666777877652   11356899884211  1112345667888899


Q ss_pred             cCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec
Q psy1420         196 KPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       196 kpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      |+||+++++--..            ++-.+.|++.||++.+..++.
T Consensus       171 k~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~Le  216 (231)
T COG1889         171 KKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLE  216 (231)
T ss_pred             ccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccC
Confidence            9999877643111            445567888999998888773

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00031  Score=61.79  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=67.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+.+..+..++..|+|||+|.|.++             ..++.                   ....++++|+++.+
T Consensus        17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT-------------~~Ll~-------------------~~~~v~aiEiD~~l   64 (259)
T COG0030          17 NVIDKIVEAANISPGDNVLEIGPGLGALT-------------EPLLE-------------------RAARVTAIEIDRRL   64 (259)
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCCCHHH-------------HHHHh-------------------hcCeEEEEEeCHHH
Confidence            34567777778888889999999999999             66665                   46679999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC-ceeEEeeee
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD-SYSAYTIAF  176 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~D~V~~~~  176 (241)
                      ++...+...                             ..++++++.+|+...+++.- .++.|+++.
T Consensus        65 ~~~L~~~~~-----------------------------~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl  103 (259)
T COG0030          65 AEVLKERFA-----------------------------PYDNLTVINGDALKFDFPSLAQPYKVVANL  103 (259)
T ss_pred             HHHHHHhcc-----------------------------cccceEEEeCchhcCcchhhcCCCEEEEcC
Confidence            999987754                             11479999999998876542 467777653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.51  E-value=0.0018  Score=64.78  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             CCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC--CCceeEEeee
Q psy1420          98 QFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE--SDSYSAYTIA  175 (241)
Q Consensus        98 ~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~V~~~  175 (241)
                      ..++|+|+++.+++.++.++.                         ..++. +.+.+..+|+.+++.+  .+++|+|+++
T Consensus       257 ~~i~G~Did~~av~~A~~N~~-------------------------~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNAR-------------------------RAGVA-ELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-cceEEEeCChhhcccccccCCCCEEEEC
Confidence            368999999999999999998                         66765 5688999999887543  3479999987


Q ss_pred             e--hhhcc--ccHHHH---HHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         176 F--GIRNV--TRIDKA---LSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       176 ~--~l~~~--~~~~~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      -  +.+.-  .+...+   +.+..+...+|+.+++.+...    ++.+..|+...+...+
T Consensus       311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~----~l~~~~~l~~~~~~~l  366 (702)
T PRK11783        311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSSP----ELLSCLGLRADKQYKL  366 (702)
T ss_pred             CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCH----HHHHHhCCCCCCCeee
Confidence            3  32221  122222   333334444898887766543    2334445554333333

>KOG1663|consensus

Probab=97.48  E-value=0.00064  Score=58.56  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=77.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+++|+|.=||+.+             ..++.    .+.            ...+++++|+++...+.+.....    
T Consensus        73 ~ak~~lelGvfTGySa-------------L~~Al----alp------------~dGrv~a~eid~~~~~~~~~~~k----  119 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSA-------------LAVAL----ALP------------EDGRVVAIEIDADAYEIGLELVK----  119 (237)
T ss_pred             CCceEEEEecccCHHH-------------HHHHH----hcC------------CCceEEEEecChHHHHHhHHHHH----
Confidence            4558999999999877             33322    111            47899999999999999977776    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC------CCCCCceeEEeeeehhhcc-ccHHHHHHHHHHhc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVL  195 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~~L  195 (241)
                                           ..+.. ..++++++.+.+.      ..+.++||.++.    .+. .+......++.+++
T Consensus       120 ---------------------~agv~-~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Ll  173 (237)
T KOG1663|consen  120 ---------------------LAGVD-HKITFIEGPALESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLL  173 (237)
T ss_pred             ---------------------hcccc-ceeeeeecchhhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhc
Confidence                                 66666 6788888886653      245679999985    333 23457888999999


Q ss_pred             cCCcEEEEE
Q psy1420         196 KPGGRFLCL  204 (241)
Q Consensus       196 kpgG~l~i~  204 (241)
                      ++||.+++-
T Consensus       174 r~GGvi~~D  182 (237)
T KOG1663|consen  174 RVGGVIVVD  182 (237)
T ss_pred             ccccEEEEe
Confidence            999999874

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.45  E-value=3e-05  Score=67.47  Aligned_cols=90  Identities=29%  Similarity=0.430  Sum_probs=69.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhh-hhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQ-VIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      +|+++++.+..+.....   .++++|.+|+.. ++|.+|++.++++.+|+||++|....+..-++...+.+.....+.  
T Consensus       147 KpgG~~~vle~~~p~~~---~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~--  221 (238)
T COG2226         147 KPGGRLLVLEFSKPDNP---VLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR--  221 (238)
T ss_pred             cCCeEEEEEEcCCCCch---hhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe--
Confidence            67777777777777665   778999988888 999999999999999999999988777666655554443333332  


Q ss_pred             CCccccccccceecceeeeeeccc
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDK  144 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~  144 (241)
                              ++++.+|+..++.+.+
T Consensus       222 --------~~~~~~G~~~l~~g~K  237 (238)
T COG2226         222 --------YENLTFGIVALHRGYK  237 (238)
T ss_pred             --------eEeeeeeeEEEEEEec
Confidence                    7888888888887654

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.35  E-value=0.001  Score=59.33  Aligned_cols=133  Identities=22%  Similarity=0.324  Sum_probs=91.7

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ...+.+.++.+|||+.+++|.-+             .+++..|.                ....+++.|+++..+.....
T Consensus        78 ~~~L~~~~~~~VLD~CAapGgKt-------------~~la~~~~----------------~~g~i~A~D~~~~Rl~~l~~  128 (283)
T PF01189_consen   78 ALALDPQPGERVLDMCAAPGGKT-------------THLAELMG----------------NKGEIVANDISPKRLKRLKE  128 (283)
T ss_dssp             HHHHTTTTTSEEEESSCTTSHHH-------------HHHHHHTT----------------TTSEEEEEESSHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCce-------------eeeeeccc----------------chhHHHHhccCHHHHHHHHH
Confidence            34567889999999999999987             44444222                25689999999999999999


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeee----e--hhhcccc----
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIA----F--GIRNVTR----  183 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~----~--~l~~~~~----  183 (241)
                      ++.                         +.++.  ++.....|.....  .....||.|+.-    .  .++.-++    
T Consensus       129 ~~~-------------------------r~g~~--~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~  181 (283)
T PF01189_consen  129 NLK-------------------------RLGVF--NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWR  181 (283)
T ss_dssp             HHH-------------------------HTT-S--SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHH
T ss_pred             HHH-------------------------hcCCc--eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhc
Confidence            988                         66655  5666666665541  223469999842    1  2221111    


Q ss_pred             ------------HHHHHHHHHHhc----cCCcEEEEEecCH------HHHHHHHHHC-CCceEE
Q psy1420         184 ------------IDKALSEAYRVL----KPGGRFLCLEFSH------EEFKSMIESA-GFQYVT  224 (241)
Q Consensus       184 ------------~~~~l~~~~~~L----kpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~  224 (241)
                                  -.+.|+.+.+.+    ||||+++-++-+-      +.++..+++. .|..+.
T Consensus       182 ~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~  245 (283)
T PF01189_consen  182 RSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVP  245 (283)
T ss_dssp             E-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred             ccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence                        147889999999    9999999887555      5556666666 455443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.34  E-value=0.0059  Score=53.64  Aligned_cols=105  Identities=11%  Similarity=0.166  Sum_probs=72.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ....+.+.+.++..++..|+|+|+|+|.++             ..++.                   ....++++|+++.
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT-------------~~L~~-------------------~~~~v~~vE~d~~   63 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALT-------------RELLK-------------------RGKRVIAVEIDPD   63 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCH-------------HHHHH-------------------HSSEEEEEESSHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccch-------------hhHhc-------------------ccCcceeecCcHh
Confidence            344567777778778999999999999999             66655                   3468999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC---CceeEEeeeehhhccccHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRID  185 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~~~l~~~~~~~  185 (241)
                      +.+..++...                             ..++++++.+|+.......   .....|+++.-. ++.  .
T Consensus        64 ~~~~L~~~~~-----------------------------~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~is--~  111 (262)
T PF00398_consen   64 LAKHLKERFA-----------------------------SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY-NIS--S  111 (262)
T ss_dssp             HHHHHHHHCT-----------------------------TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG-TGH--H
T ss_pred             HHHHHHHHhh-----------------------------hcccceeeecchhccccHHhhcCCceEEEEEecc-cch--H
Confidence            9999887654                             1257999999999876543   344566665443 222  2


Q ss_pred             HHHHHHHHhccC
Q psy1420         186 KALSEAYRVLKP  197 (241)
Q Consensus       186 ~~l~~~~~~Lkp  197 (241)
                      ..+..+...-+.
T Consensus       112 ~il~~ll~~~~~  123 (262)
T PF00398_consen  112 PILRKLLELYRF  123 (262)
T ss_dssp             HHHHHHHHHGGG
T ss_pred             HHHHHHhhcccc
Confidence            445555443333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0062  Score=52.89  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=85.6

Q ss_pred             HHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          34 IFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        34 ~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..++.+.. .++..+||+|+.||.++             .-++.                  ....+++++|..-..+..
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFT-------------d~lLq------------------~gAk~VyavDVG~~Ql~~  117 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFT-------------DVLLQ------------------RGAKHVYAVDVGYGQLHW  117 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHH-------------HHHHH------------------cCCcEEEEEEccCCccCH
Confidence            34455554 56778999999999999             33333                  135689999998877766


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCe-eEEecccCCCCCC--CCceeEEeeeehhhccccHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRL-RFLEANAEELPIE--SDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~--~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      -.+.-.                                ++ .+-..|+..+..+  .+..|+++|--++   .....+|.
T Consensus       118 kLR~d~--------------------------------rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF---ISL~~iLp  162 (245)
T COG1189         118 KLRNDP--------------------------------RVIVLERTNVRYLTPEDFTEKPDLIVIDVSF---ISLKLILP  162 (245)
T ss_pred             hHhcCC--------------------------------cEEEEecCChhhCCHHHcccCCCeEEEEeeh---hhHHHHHH
Confidence            443322                                23 3334444443211  2367888876554   35567888


Q ss_pred             HHHHhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .+..+++|++-++..--..                        ..+.+++.+.||++......
T Consensus       163 ~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S  225 (245)
T COG1189         163 ALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS  225 (245)
T ss_pred             HHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence            8999999998877643111                        78889999999998776644

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.08  E-value=0.005  Score=51.70  Aligned_cols=140  Identities=14%  Similarity=0.177  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCC
Q psy1420          29 RLWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIP  106 (241)
Q Consensus        29 ~~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s  106 (241)
                      ...++.+...+.+  -.+.++||+=+|+|...             ...+.       +           ....++.+|.+
T Consensus        27 drVREalFNil~~~~i~g~~~LDlFAGSGaLG-------------lEAlS-------R-----------GA~~~~~vE~~   75 (187)
T COG0742          27 DRVREALFNILAPDEIEGARVLDLFAGSGALG-------------LEALS-------R-----------GAARVVFVEKD   75 (187)
T ss_pred             hHHHHHHHHhccccccCCCEEEEecCCccHhH-------------HHHHh-------C-----------CCceEEEEecC
Confidence            3567888888876  68899999999999988             33332       1           35689999999


Q ss_pred             hHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC--CCceeEEeeeehhh-ccc
Q psy1420         107 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE--SDSYSAYTIAFGIR-NVT  182 (241)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~~D~V~~~~~l~-~~~  182 (241)
                      ......+++++.                         ..+.. .+..++..|+... +..  ..+||+|+.---.+ .+-
T Consensus        76 ~~a~~~l~~N~~-------------------------~l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~  129 (187)
T COG0742          76 RKAVKILKENLK-------------------------ALGLE-GEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLL  129 (187)
T ss_pred             HHHHHHHHHHHH-------------------------HhCCc-cceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchh
Confidence            999999999988                         44433 4677778887632 111  22599999754333 122


Q ss_pred             cHHHHHHH--HHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEE
Q psy1420         183 RIDKALSE--AYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       183 ~~~~~l~~--~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      +....+..  -..+|+|+|.+++-.....++.  ..-.+|.+.+...
T Consensus       130 ~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~~--~~~~~~~~~r~k~  174 (187)
T COG0742         130 DKELALLLLEENGWLKPGALIVVEHDKDVELP--ELPANFELHREKK  174 (187)
T ss_pred             hHHHHHHHHHhcCCcCCCcEEEEEeCCCcCcc--ccCCCeEEEEEee
Confidence            23444444  4468999999988443332222  2345566555443

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.07  E-value=0.0053  Score=57.06  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=32.7

Q ss_pred             cccCCCCCCCCceeEEeeeehhhcccc--------------------------------------HHHHHHHHHHhccCC
Q psy1420         157 ANAEELPIESDSYSAYTIAFGIRNVTR--------------------------------------IDKALSEAYRVLKPG  198 (241)
Q Consensus       157 ~d~~~~~~~~~~~D~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lkpg  198 (241)
                      +.+..-=+|.++.+++++++++||+..                                      ...+|+.=.+-|.||
T Consensus       151 GSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpG  230 (386)
T PLN02668        151 GSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRG  230 (386)
T ss_pred             ccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            334333356788899999988887542                                      123444445678999


Q ss_pred             cEEEEEe
Q psy1420         199 GRFLCLE  205 (241)
Q Consensus       199 G~l~i~~  205 (241)
                      |+++++-
T Consensus       231 G~mvl~~  237 (386)
T PLN02668        231 GAMFLVC  237 (386)
T ss_pred             cEEEEEE
Confidence            9998864

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.07  E-value=0.0025  Score=59.06  Aligned_cols=101  Identities=11%  Similarity=0.046  Sum_probs=73.7

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +.+|||+.||+|..+             .+++.       ..         ....++++.|+++..++.+++++.     
T Consensus        45 ~~~vLD~faGsG~rg-------------ir~a~-------e~---------~ga~~Vv~nD~n~~Av~~i~~N~~-----   90 (374)
T TIGR00308        45 YINIADALSASGIRA-------------IRYAH-------EI---------EGVREVFANDINPKAVESIKNNVE-----   90 (374)
T ss_pred             CCEEEECCCchhHHH-------------HHHHh-------hC---------CCCCEEEEEeCCHHHHHHHHHHHH-----
Confidence            468999999999988             44433       10         023579999999999999999987     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                          ..++.  ++.+.+.|+...- ....+||+|...-    ...+..++..+.+.+++||.++
T Consensus        91 --------------------~N~~~--~~~v~~~Da~~~l~~~~~~fDvIdlDP----fGs~~~fld~al~~~~~~glL~  144 (374)
T TIGR00308        91 --------------------YNSVE--NIEVPNEDAANVLRYRNRKFHVIDIDP----FGTPAPFVDSAIQASAERGLLL  144 (374)
T ss_pred             --------------------HhCCC--cEEEEchhHHHHHHHhCCCCCEEEeCC----CCCcHHHHHHHHHhcccCCEEE
Confidence                                33332  4677888876542 1135799997532    2355688999999999999999


Q ss_pred             EE
Q psy1420         203 CL  204 (241)
Q Consensus       203 i~  204 (241)
                      ++
T Consensus       145 vT  146 (374)
T TIGR00308       145 VT  146 (374)
T ss_pred             EE
Confidence            86

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.05  E-value=0.0028  Score=50.77  Aligned_cols=105  Identities=21%  Similarity=0.310  Sum_probs=69.1

Q ss_pred             CceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeee
Q psy1420          99 FPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAF  176 (241)
Q Consensus        99 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~  176 (241)
                      +++++|+-+.+++..+++..                         +.+.. .+++++..+=+.+.  .+++++|+++.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~-------------------------~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNL   54 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLE-------------------------EAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNL   54 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHH-------------------------HTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEE
T ss_pred             CEEEEECHHHHHHHHHHHHH-------------------------hcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEEC
Confidence            37899999999999999998                         66655 47888888766553  2234899999887


Q ss_pred             hhh------ccccH---HHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHH---HCCCceEEEEEec
Q psy1420         177 GIR------NVTRI---DKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIE---SAGFQYVTYENLT  229 (241)
Q Consensus       177 ~l~------~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~---~~Gf~~~~~~~~~  229 (241)
                      +.-      -++.+   ..+++.+.++|+|||.+.++.+..        +.+.++++   +..|.+..+.-++
T Consensus        55 GYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N  127 (140)
T PF06962_consen   55 GYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN  127 (140)
T ss_dssp             SB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred             CcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence            642      12233   588899999999999999887653        44455554   4557776666553

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.03  E-value=0.0089  Score=57.65  Aligned_cols=54  Identities=15%  Similarity=0.059  Sum_probs=36.2

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ...+|+|.+||+|.+.             ..++..+... ....        .....++++|+++..+..+..++.
T Consensus        31 ~~~~ilDP~cGsG~fl-------------~~~~~~~~~~-~~~~--------~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLI-------------AALLKKNEEI-NYFK--------EVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             cceEEEeCCCCccHHH-------------HHHHHHHHhc-CCcc--------cceeeeeeechhHHHHHHHHHHHh
Confidence            4568999999999987             4443311100 0000        023578999999999999988776

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.01  E-value=0.004  Score=55.37  Aligned_cols=143  Identities=15%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +.+|+-+|||+=..+.+                    .++....        ....+.++|+++.+++.+++.+..    
T Consensus       121 p~rVaFIGSGPLPlT~i--------------------~la~~~~--------~~~~v~~iD~d~~A~~~a~~lv~~----  168 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSI--------------------VLAKQHG--------PGARVHNIDIDPEANELARRLVAS----  168 (276)
T ss_dssp             --EEEEE---SS-HHHH--------------------HHH--HT--------T--EEEEEESSHHHHHHHHHHHH-----
T ss_pred             cceEEEEcCCCcchHHH--------------------HHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHhh----
Confidence            35999999998666611                    1111100        245688999999999999876651    


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh-ccccHHHHHHHHHHhccCCcEEE
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~-~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                          ..++. .+++++++|..+.+..-..||+|+...... .-.+..+.+..+.+.++||..++
T Consensus       169 --------------------~~~L~-~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~  227 (276)
T PF03059_consen  169 --------------------DLGLS-KRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV  227 (276)
T ss_dssp             ----------------------HH--SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred             --------------------ccccc-CCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence                                12333 579999999987765556899998765443 34477899999999999999988


Q ss_pred             EEecCH------HHHHHHHHHCCCceEEEEEecCcee-EEEeeec
Q psy1420         203 CLEFSH------EEFKSMIESAGFQYVTYENLTFGVV-AIHSGFK  240 (241)
Q Consensus       203 i~~~~~------~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~~~~~  240 (241)
                      +-....      ..+... .-.||+.....+=+..|+ .++.+||
T Consensus       228 ~Rsa~GlR~~LYp~vd~~-~l~gf~~~~~~hP~~~ViNSvv~~rk  271 (276)
T PF03059_consen  228 VRSAHGLRSFLYPVVDPE-DLRGFEVLAVVHPTDEVINSVVFARK  271 (276)
T ss_dssp             EEE--GGGGGSS----TG-GGTTEEEEEEE---TT---EEEEE--
T ss_pred             EecchhhHHHcCCCCChH-HCCCeEEEEEECCCCCceeEEEEEEe
Confidence            753222      111111 122888766555443333 4455555

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1540|consensus

Probab=97.01  E-value=0.00031  Score=61.52  Aligned_cols=58  Identities=45%  Similarity=0.680  Sum_probs=48.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCcee
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQ  102 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (241)
                      +||++++-+....=++.   ++..||++|+.+++|++|+++++++..|+||++|......+
T Consensus       205 KpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~q  262 (296)
T KOG1540|consen  205 KPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQ  262 (296)
T ss_pred             CCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCH
Confidence            67888776666665555   68899999999999999999999999999999997765543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.98  E-value=0.0075  Score=55.18  Aligned_cols=117  Identities=11%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.++||+||++|.++             ..++.                   .+..++++|..+- -...   ..   
T Consensus       210 ~~g~~vlDLGAsPGGWT-------------~~L~~-------------------rG~~V~AVD~g~l-~~~L---~~---  250 (357)
T PRK11760        210 APGMRAVDLGAAPGGWT-------------YQLVR-------------------RGMFVTAVDNGPM-AQSL---MD---  250 (357)
T ss_pred             CCCCEEEEeCCCCcHHH-------------HHHHH-------------------cCCEEEEEechhc-CHhh---hC---
Confidence            68899999999999999             44444                   4568999995542 1111   11   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCC--c
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG--G  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg--G  199 (241)
                                                 .+++.....|......+...+|.++|    .....|.+.++.+.+.+..|  .
T Consensus       251 ---------------------------~~~V~h~~~d~fr~~p~~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g~cr  299 (357)
T PRK11760        251 ---------------------------TGQVEHLRADGFKFRPPRKNVDWLVC----DMVEKPARVAELMAQWLVNGWCR  299 (357)
T ss_pred             ---------------------------CCCEEEEeccCcccCCCCCCCCEEEE----ecccCHHHHHHHHHHHHhcCccc
Confidence                                       14677777776554322568999998    44567888999999988776  2


Q ss_pred             EEEEE-ecCH-----------HHHHHHHHHCCCc-eEEEEEe
Q psy1420         200 RFLCL-EFSH-----------EEFKSMIESAGFQ-YVTYENL  228 (241)
Q Consensus       200 ~l~i~-~~~~-----------~~~~~~l~~~Gf~-~~~~~~~  228 (241)
                      ..++. -+..           +.+.+.+.++|.. ......+
T Consensus       300 ~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khL  341 (357)
T PRK11760        300 EAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQL  341 (357)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeee
Confidence            33332 1211           4466777788863 2344444

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.96  E-value=0.00055  Score=56.30  Aligned_cols=72  Identities=22%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD  125 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~  125 (241)
                      .|+|+-||.|.++             ++++.                   ...+++++|+++..++.++.+++       
T Consensus         2 ~vlD~fcG~GGNt-------------IqFA~-------------------~~~~Viaidid~~~~~~a~hNa~-------   42 (163)
T PF09445_consen    2 TVLDAFCGVGGNT-------------IQFAR-------------------TFDRVIAIDIDPERLECAKHNAE-------   42 (163)
T ss_dssp             EEEETT-TTSHHH-------------HHHHH-------------------TT-EEEEEES-HHHHHHHHHHHH-------
T ss_pred             EEEEeccCcCHHH-------------HHHHH-------------------hCCeEEEEECCHHHHHHHHHHHH-------
Confidence            6899999999999             77776                   45689999999999999999988       


Q ss_pred             cccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCc-eeEEeee
Q psy1420         126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDS-YSAYTIA  175 (241)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~V~~~  175 (241)
                                        --|+. +++.++++|+.+..  ..... +|+|+++
T Consensus        43 ------------------vYGv~-~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen   43 ------------------VYGVA-DNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             ------------------HTT-G-GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             ------------------HcCCC-CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence                              44544 57999999987652  11122 7999975

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.90  E-value=0.0036  Score=57.20  Aligned_cols=54  Identities=15%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             EecccCCCCCCCCceeEEeeeehhhcccc---------------------------------------HHHHHHHHHHhc
Q psy1420         155 LEANAEELPIESDSYSAYTIAFGIRNVTR---------------------------------------IDKALSEAYRVL  195 (241)
Q Consensus       155 ~~~d~~~~~~~~~~~D~V~~~~~l~~~~~---------------------------------------~~~~l~~~~~~L  195 (241)
                      +.+.+..-=+|.++.|+++++.++||+..                                       ...+|+.=.+-|
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  173 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL  173 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            45555554466788999999988887531                                       123444445578


Q ss_pred             cCCcEEEEEecCH
Q psy1420         196 KPGGRFLCLEFSH  208 (241)
Q Consensus       196 kpgG~l~i~~~~~  208 (241)
                      +|||++++.-.+.
T Consensus       174 v~GG~mvl~~~gr  186 (334)
T PF03492_consen  174 VPGGRMVLTFLGR  186 (334)
T ss_dssp             EEEEEEEEEEEE-
T ss_pred             ccCcEEEEEEeec
Confidence            9999999875433

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1122|consensus

Probab=96.84  E-value=0.012  Score=55.02  Aligned_cols=130  Identities=17%  Similarity=0.211  Sum_probs=87.0

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +++.++.+|||..+.+|.-+             .+++.    ++.            ....+++.|.+...++....++.
T Consensus       237 L~Pq~gERIlDmcAAPGGKT-------------t~IAa----lMk------------n~G~I~AnD~n~~r~~~l~~n~~  287 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKT-------------THIAA----LMK------------NTGVIFANDSNENRLKSLKANLH  287 (460)
T ss_pred             cCCCCCCeecchhcCCCchH-------------HHHHH----HHc------------CCceEEecccchHHHHHHHHHHH
Confidence            45789999999999998877             34433    222            35689999999999999999998


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEe----eee--hhh------ccc-
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYT----IAF--GIR------NVT-  182 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~----~~~--~l~------~~~-  182 (241)
                                               +.|+.  +..+...|..+.|   ++. +||.|+    |+.  ++.      ... 
T Consensus       288 -------------------------rlGv~--ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~  339 (460)
T KOG1122|consen  288 -------------------------RLGVT--NTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKT  339 (460)
T ss_pred             -------------------------HhCCC--ceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccchh
Confidence                                     55554  4556666666554   223 799998    333  221      011 


Q ss_pred             --------c-HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420         183 --------R-IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY  225 (241)
Q Consensus       183 --------~-~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~  225 (241)
                              . -.+.|..+..++++||+|+-++-+.      .-+.-.|.+. .++++..
T Consensus       340 ~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~  398 (460)
T KOG1122|consen  340 VKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPT  398 (460)
T ss_pred             HHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccc
Confidence                    1 1477788889999999999876555      3344455555 3444433

>KOG3201|consensus

Probab=96.80  E-value=0.0013  Score=53.97  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=74.0

Q ss_pred             cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEe
Q psy1420          96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYT  173 (241)
Q Consensus        96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~  173 (241)
                      +...+..+|-+...++..++.....                      ...+..  .+..+.......  ..+..+||.|+
T Consensus        53 ~~~~v~ltdgne~svrnv~ki~~~n----------------------~~s~~t--sc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   53 PDSSVWLTDGNEESVRNVEKIRNSN----------------------MASSLT--SCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             CCceEEEecCCHHHHHHHHHHHhcc----------------------cccccc--eehhhHHHHhhhHHHHhhCcccEEE
Confidence            4668999999999998888766510                      001111  222233332221  12345899999


Q ss_pred             eeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEec
Q psy1420         174 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       174 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      |+-++-.-+.-+...+.+.++|+|.|.-++...-.    +.+.+.....||.+.-.++..
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l~enyd  168 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCLEENYD  168 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEecccHh
Confidence            99887665666788899999999999976655443    777788888999887666553

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.79  E-value=0.016  Score=49.81  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=88.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+.++.|+||-.++..             ..++.       ..          .....++.|+++.-.+.+.+++.    
T Consensus        16 ~~~~iaDIGsDHAYLp-------------~~Lv~-------~~----------~~~~~va~eV~~gpl~~a~~~v~----   61 (226)
T COG2384          16 QGARIADIGSDHAYLP-------------IYLVK-------NN----------PASTAVAGEVVPGPLESAIRNVK----   61 (226)
T ss_pred             cCCceeeccCchhHhH-------------HHHHh-------cC----------CcceEEEeecccCHHHHHHHHHH----
Confidence            3445999999998877             33332       11          45689999999999999999998    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                           +.++. +++++..+|....=..++.+|.|+.+..=  -.-+...|++-.+.|+.=-+++
T Consensus        62 ---------------------~~~l~-~~i~vr~~dgl~~l~~~d~~d~ivIAGMG--G~lI~~ILee~~~~l~~~~rlI  117 (226)
T COG2384          62 ---------------------KNNLS-ERIDVRLGDGLAVLELEDEIDVIVIAGMG--GTLIREILEEGKEKLKGVERLI  117 (226)
T ss_pred             ---------------------hcCCc-ceEEEeccCCccccCccCCcCEEEEeCCc--HHHHHHHHHHhhhhhcCcceEE
Confidence                                 77776 78899999975432335578998765421  1233456666666665333454


Q ss_pred             EEe-cCHHHHHHHHHHCCCceEEEEEe
Q psy1420         203 CLE-FSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       203 i~~-~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.- .....+++++...+|.+....-+
T Consensus       118 LQPn~~~~~LR~~L~~~~~~I~~E~il  144 (226)
T COG2384         118 LQPNIHTYELREWLSANSYEIKAETIL  144 (226)
T ss_pred             ECCCCCHHHHHHHHHhCCceeeeeeee
Confidence            432 33389999999999998766544

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.76  E-value=0.012  Score=52.00  Aligned_cols=121  Identities=16%  Similarity=0.166  Sum_probs=71.0

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      ..+||+|||-.+..|.           .+++.    ..            .+..++.-+|..|..+..++..+.      
T Consensus        70 rQFLDlGsGlPT~~nv-----------HevAq----~~------------~P~aRVVYVD~DPvv~ah~ralL~------  116 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNV-----------HEVAQ----RV------------APDARVVYVDNDPVVLAHARALLA------  116 (267)
T ss_dssp             -EEEEET--S--SS-H-----------HHHHH----HH-------------TT-EEEEEESSHHHHHCCHHHHT------
T ss_pred             ceEEEcccCCCCCCCH-----------hHHHH----hh------------CCCceEEEECCCchHHHHHHhhhc------
Confidence            4699999998754421           23322    11            157899999999999999988876      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCC------CCCCcee-----EEeeeehhhcccc---HHHHHHH
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP------IESDSYS-----AYTIAFGIRNVTR---IDKALSE  190 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D-----~V~~~~~l~~~~~---~~~~l~~  190 (241)
                                         ..  +.++..++.+|+.+..      ...+-+|     .++...++|+++|   +...++.
T Consensus       117 -------------------~~--~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~  175 (267)
T PF04672_consen  117 -------------------DN--PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVAR  175 (267)
T ss_dssp             -------------------T---TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHH
T ss_pred             -------------------CC--CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHH
Confidence                               11  1123788999987752      0012233     4667788888754   7899999


Q ss_pred             HHHhccCCcEEEEEecCH-------HHHHHHHHHCC
Q psy1420         191 AYRVLKPGGRFLCLEFSH-------EEFKSMIESAG  219 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~G  219 (241)
                      +...|.||.+|.++....       +.+...+++.|
T Consensus       176 l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~  211 (267)
T PF04672_consen  176 LRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG  211 (267)
T ss_dssp             HHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred             HHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence            999999999999976554       44556666554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.72  E-value=0.037  Score=49.71  Aligned_cols=60  Identities=12%  Similarity=0.073  Sum_probs=48.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+..++.+.+++++..+|+=-|.|..+             ..++..++                ....++++|.++.+
T Consensus        10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS-------------~~iL~~l~----------------~~~~li~~DrD~~A   60 (314)
T COG0275          10 VLLNEVVELLAPKPDGIYIDGTLGAGGHS-------------RAILEKLP----------------DLGRLIGIDRDPQA   60 (314)
T ss_pred             hHHHHHHHhcccCCCcEEEEecCCCcHhH-------------HHHHHhCC----------------CCCeEEEEcCCHHH
Confidence            45677788889999999999999999988             44444111                35679999999999


Q ss_pred             HHHHHHHHh
Q psy1420         110 LRFLEANAE  118 (241)
Q Consensus       110 ~~~~~~~~~  118 (241)
                      ++.+++...
T Consensus        61 i~~a~~~l~   69 (314)
T COG0275          61 IAIAKERLK   69 (314)
T ss_pred             HHHHHHHhh
Confidence            999998875

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.63  E-value=0.0013  Score=53.70  Aligned_cols=55  Identities=24%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             CeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEe
Q psy1420         151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       151 ~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .+++++-...+.++.+++.|+|.+..++.|+.  .-..+++++++.|||||+|-|..
T Consensus        30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv   86 (185)
T COG4627          30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV   86 (185)
T ss_pred             ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence            35566555666788899999999999998865  44689999999999999999865

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.61  E-value=0.01  Score=50.22  Aligned_cols=105  Identities=16%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      -.+.+|||+|+|+|..+             +....      +            ....+...|+.+.....+.-++.   
T Consensus        78 VrgkrVLd~gagsgLva-------------IAaa~------a------------GA~~v~a~d~~P~~~~ai~lNa~---  123 (218)
T COG3897          78 VRGKRVLDLGAGSGLVA-------------IAAAR------A------------GAAEVVAADIDPWLEQAIRLNAA---  123 (218)
T ss_pred             cccceeeecccccChHH-------------HHHHH------h------------hhHHHHhcCCChHHHHHhhcchh---
Confidence            56789999999999877             32222      1            34578899999999988888877   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++.   +.+...|.-.   .+..+|+++.+-.+.+-+.-.+.+....++...|-.+
T Consensus       124 ----------------------angv~---i~~~~~d~~g---~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~v  175 (218)
T COG3897         124 ----------------------ANGVS---ILFTHADLIG---SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAV  175 (218)
T ss_pred             ----------------------hccce---eEEeeccccC---CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEE
Confidence                                  55544   6777777665   2457999999988887777778888544555555566


Q ss_pred             EEEecCH
Q psy1420         202 LCLEFSH  208 (241)
Q Consensus       202 ~i~~~~~  208 (241)
                      ++.+...
T Consensus       176 lvgdp~R  182 (218)
T COG3897         176 LVGDPGR  182 (218)
T ss_pred             EEeCCCC
Confidence            6666554

>KOG2352|consensus

Probab=96.55  E-value=0.042  Score=52.23  Aligned_cols=103  Identities=18%  Similarity=0.332  Sum_probs=78.4

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      .+++.+|||.-..+             ..+..                  .....++.+|+|+..++.....-.      
T Consensus        50 ~~~l~lGCGNS~l~-------------e~ly~------------------~G~~dI~~iD~S~V~V~~m~~~~~------   92 (482)
T KOG2352|consen   50 FKILQLGCGNSELS-------------EHLYK------------------NGFEDITNIDSSSVVVAAMQVRNA------   92 (482)
T ss_pred             ceeEeecCCCCHHH-------------HHHHh------------------cCCCCceeccccHHHHHHHHhccc------
Confidence            48999999997666             33322                  145789999999999888765432      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc----------cHHHHHHHHHHh
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT----------RIDKALSEAYRV  194 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~----------~~~~~l~~~~~~  194 (241)
                                            ...+...+...|...+.+++++||+|+.-..++++-          ....-+.+++|+
T Consensus        93 ----------------------~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrv  150 (482)
T KOG2352|consen   93 ----------------------KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRV  150 (482)
T ss_pred             ----------------------cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHH
Confidence                                  112468899999999999999999999888776532          234667899999


Q ss_pred             ccCCcEEEEEec
Q psy1420         195 LKPGGRFLCLEF  206 (241)
Q Consensus       195 LkpgG~l~i~~~  206 (241)
                      ++|||+.+.+..
T Consensus       151 l~~~gk~~svtl  162 (482)
T KOG2352|consen  151 LAPGGKYISVTL  162 (482)
T ss_pred             hccCCEEEEEEe
Confidence            999999877665

>KOG4589|consensus

Probab=96.52  E-value=0.019  Score=48.34  Aligned_cols=17  Identities=12%  Similarity=0.286  Sum_probs=16.1

Q ss_pred             CCCCeEEEEecCCCcch
Q psy1420          42 THDTKLLDVAGGTDPLA   58 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~   58 (241)
                      +|+.+|||+||.+|.|+
T Consensus        68 ~p~~~VlD~G~APGsWs   84 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWS   84 (232)
T ss_pred             CCCCEEEEccCCCChHH
Confidence            68999999999999999

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.43  E-value=0.001  Score=49.86  Aligned_cols=55  Identities=16%  Similarity=0.297  Sum_probs=35.8

Q ss_pred             CCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         150 PRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       150 ~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .++++++++..+.  ..+.+++|+++.-. -|..+.....+..+.+.|+|||.+++=+
T Consensus        49 ~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   49 DRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            4688888887643  12246899998654 2334566778899999999999988743

>KOG2730|consensus

Probab=96.38  E-value=0.0022  Score=55.13  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=58.4

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      ..+|+|.-||.|.++             .+.+.                   ....++++|++|.-+..++.+++     
T Consensus        95 ~~~iidaf~g~gGnt-------------iqfa~-------------------~~~~VisIdiDPikIa~AkhNae-----  137 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNT-------------IQFAL-------------------QGPYVIAIDIDPVKIACARHNAE-----  137 (263)
T ss_pred             cchhhhhhhcCCchH-------------HHHHH-------------------hCCeEEEEeccHHHHHHHhccce-----
Confidence            347899999888888             66655                   57789999999999999999988     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeee
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAF  176 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~  176 (241)
                                          -=|++ .+++|+++|+..+    ....+.+|+|+.+-
T Consensus       138 --------------------iYGI~-~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen  138 --------------------VYGVP-DRITFICGDFLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             --------------------eecCC-ceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence                                66888 4999999997765    23445577777543

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.039  Score=50.68  Aligned_cols=43  Identities=19%  Similarity=0.334  Sum_probs=29.1

Q ss_pred             CCceeEEeeeehhhcc---ccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         166 SDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      .+.|++++...-|-..   ..+...++.+-.++.|||.|++++-+.
T Consensus       183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            3566666554333222   223457888888999999999998776

>KOG1709|consensus

Probab=96.33  E-value=0.022  Score=49.05  Aligned_cols=104  Identities=15%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+|++||+||.|-|-..             ..+        .          +.......-++..|...+..+...-   
T Consensus       100 tkggrvLnVGFGMgIid-------------T~i--------Q----------e~~p~~H~IiE~hp~V~krmr~~gw---  145 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIID-------------TFI--------Q----------EAPPDEHWIIEAHPDVLKRMRDWGW---  145 (271)
T ss_pred             hCCceEEEeccchHHHH-------------HHH--------h----------hcCCcceEEEecCHHHHHHHHhccc---
Confidence            57889999999998765             111        1          1134566788999998888776533   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                              .-. .++.++.+-.+..  .++++.||=|+.----.+-++...+.+.+.|+|||+|
T Consensus       146 ------------------------~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~g  200 (271)
T KOG1709|consen  146 ------------------------REK-ENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEG  200 (271)
T ss_pred             ------------------------ccc-cceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCc
Confidence                                    111 3566777665543  2557789998854333445666777789999999999


Q ss_pred             EEEEE
Q psy1420         200 RFLCL  204 (241)
Q Consensus       200 ~l~i~  204 (241)
                      ++-..
T Consensus       201 v~Syf  205 (271)
T KOG1709|consen  201 VFSYF  205 (271)
T ss_pred             eEEEe
Confidence            98653

>KOG2187|consensus

Probab=96.15  E-value=0.011  Score=56.47  Aligned_cols=75  Identities=23%  Similarity=0.248  Sum_probs=59.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..+...+.+++....+..++|+-||||...             ..+..                   ....++|+++++.
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~ig-------------lala~-------------------~~~~ViGvEi~~~  416 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIG-------------LALAR-------------------GVKRVIGVEISPD  416 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCcee-------------hhhhc-------------------cccceeeeecChh
Confidence            345667777778788889999999999988             43333                   5778999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                      .++.|+.++.                         .+++.  +.+|+++-++.+
T Consensus       417 aV~dA~~nA~-------------------------~Ngis--Na~Fi~gqaE~~  443 (534)
T KOG2187|consen  417 AVEDAEKNAQ-------------------------INGIS--NATFIVGQAEDL  443 (534)
T ss_pred             hcchhhhcch-------------------------hcCcc--ceeeeecchhhc
Confidence            9999999998                         67776  788888855543

>KOG1562|consensus

Probab=96.01  E-value=0.043  Score=49.19  Aligned_cols=144  Identities=11%  Similarity=0.069  Sum_probs=93.2

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...++|-+|.|.|...             +..+.                 ++....+...|+....++..++-..++  
T Consensus       121 npkkvlVVgggDggvl-------------revik-----------------H~~ve~i~~~eiD~~Vie~sk~y~p~l--  168 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVL-------------REVIK-----------------HKSVENILLCEIDENVIESSKQYLPTL--  168 (337)
T ss_pred             CCCeEEEEecCCccce-------------eeeec-----------------cccccceeeehhhHHHHHHHHHHhHHH--
Confidence            3458999999999877             44443                 124567888899888888877765533  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhcccc----HHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lk  196 (241)
                                           ..+...+++.++.+|...+  ....++||+|+.-..=--.+.    .+..+..+.+.||
T Consensus       169 ---------------------a~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk  227 (337)
T KOG1562|consen  169 ---------------------ACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALK  227 (337)
T ss_pred             ---------------------hcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhC
Confidence                                 3345556788888875443  133678999985321111111    2467788899999


Q ss_pred             CCcEEEEEecCH-------HHHH----HHHHHCCCceEEEEEecCceeEEEeee
Q psy1420         197 PGGRFLCLEFSH-------EEFK----SMIESAGFQYVTYENLTFGVVAIHSGF  239 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~----~~l~~~Gf~~~~~~~~~~~~~~~~~~~  239 (241)
                      +||+++...-+-       ++.+    .++....+.+.++-++.+|..+.....
T Consensus       228 ~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s  281 (337)
T KOG1562|consen  228 GDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS  281 (337)
T ss_pred             CCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence            999998764222       2222    223334456666677788888887765

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.67  E-value=0.023  Score=45.10  Aligned_cols=52  Identities=15%  Similarity=0.134  Sum_probs=38.1

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ..+...|+|+|||.|+++             ..+..    ++...         .....+.++|.++...+.+.+...
T Consensus        23 ~~~~~~vvD~GsG~GyLs-------------~~La~----~l~~~---------~~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLS-------------RALAH----LLCNS---------SPNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             cCCCCEEEEeCCChhHHH-------------HHHHH----HHHhc---------CCCCeEEEEECCcHHHHHHHHHHH
Confidence            366779999999999999             22222    11111         146789999999999999988877

>KOG2198|consensus

Probab=95.52  E-value=0.36  Score=44.51  Aligned_cols=137  Identities=19%  Similarity=0.254  Sum_probs=79.4

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ++.+|+.+|||..+.+|.-+             .+++..+.    ..+         ....+.+-|.++...........
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt-------------~qLLeal~----~~~---------~~g~vvaND~d~~R~~~L~~q~~  204 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKT-------------AQLLEALH----KDP---------TRGYVVANDVDPKRLNMLVHQLK  204 (375)
T ss_pred             cccCCCCeeeeeccCCCccH-------------HHHHHHHh----cCC---------CCCeeEecccCHHHHHHHHHHHh
Confidence            34589999999999999988             56665221    111         14578999999998888887776


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hhhccc----------
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GIRNVT----------  182 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l~~~~----------  182 (241)
                      .+|.+          +-+..-++..  ..+  ++.+..++    +.....||.|+|--      .++.-+          
T Consensus       205 ~l~~~----------~~~v~~~~~~--~~p--~~~~~~~~----~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~  266 (375)
T KOG2198|consen  205 RLPSP----------NLLVTNHDAS--LFP--NIYLKDGN----DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQ  266 (375)
T ss_pred             ccCCc----------ceeeecccce--ecc--ccccccCc----hhhhhhcceeEEecccCCCcccccCchHhhhhhhhh
Confidence            33221          0011111000  000  11111111    22345788887531      111111          


Q ss_pred             ------c-HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC
Q psy1420         183 ------R-IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG  219 (241)
Q Consensus       183 ------~-~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G  219 (241)
                            . --.+|.+..++||+||+++-++-+-      .-+..+++..|
T Consensus       267 ~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~  316 (375)
T KOG2198|consen  267 RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVG  316 (375)
T ss_pred             hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhc
Confidence                  1 1367888899999999999876554      55567777766

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.45  E-value=0.064  Score=53.18  Aligned_cols=73  Identities=19%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             CeeEEecccCCC-CCCCCceeEEeee-ehhhccccH--HHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCceEEE
Q psy1420         151 RLRFLEANAEEL-PIESDSYSAYTIA-FGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       151 ~~~~~~~d~~~~-~~~~~~~D~V~~~-~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~~~~~  225 (241)
                      .+++..+|+.+. +.-...+|+++.- |+-..-+++  ..+++.+.++++|||.+.  +++. ..++..|.++||.+.+.
T Consensus       148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~--t~t~a~~vr~~l~~~GF~v~~~  225 (662)
T PRK01747        148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA--TFTSAGFVRRGLQEAGFTVRKV  225 (662)
T ss_pred             EEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE--EeehHHHHHHHHHHcCCeeeec
Confidence            356777887642 2112468998853 222111222  589999999999999987  4444 88999999999987654

>PRK05785 hypothetical protein; Provisional

Probab=95.43  E-value=0.012  Score=50.55  Aligned_cols=87  Identities=8%  Similarity=0.085  Sum_probs=63.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      |..-++|++.  ....   +.+.+|..|+..++|.+|.++.++..+|.||.+|.......-+..+.+.+.+ ..+     
T Consensus       139 p~~~ile~~~--p~~~---~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~-----  207 (226)
T PRK05785        139 KQVGFIAMGK--PDNV---IKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIK-----  207 (226)
T ss_pred             CceEEEEeCC--CCcH---HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-Cce-----
Confidence            3444788753  2222   6799999999999999999999999999999999777666555444444332 223     


Q ss_pred             ccccccccceecceeeeeecccc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKI  145 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~  145 (241)
                           ++++..+|+..++...|.
T Consensus       208 -----~~~~~~~G~~~~~~~~k~  225 (226)
T PRK05785        208 -----VYEERGLGLVYFVVGSSR  225 (226)
T ss_pred             -----EEEEccccEEEEEEEeeC
Confidence                 478888899888877663

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=95.35  E-value=0.051  Score=49.08  Aligned_cols=59  Identities=14%  Similarity=0.085  Sum_probs=46.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+++.+.+++++.++|+=+|.|..+             ..++..+                 ....++++|.++.+
T Consensus         7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS-------------~~iL~~l-----------------~~g~vigiD~D~~A   56 (305)
T TIGR00006         7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHS-------------KAILEQL-----------------GTGRLIGIDRDPQA   56 (305)
T ss_pred             hhHHHHHHhcCcCCCCEEEEeCCCChHHH-------------HHHHHhC-----------------CCCEEEEEcCCHHH
Confidence            34567778888888899999999999998             4444411                 13689999999999


Q ss_pred             HHHHHHHHh
Q psy1420         110 LRFLEANAE  118 (241)
Q Consensus       110 ~~~~~~~~~  118 (241)
                      ++.+++...
T Consensus        57 l~~ak~~L~   65 (305)
T TIGR00006        57 IAFAKERLS   65 (305)
T ss_pred             HHHHHHHHh
Confidence            999988776

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.30  E-value=0.097  Score=47.13  Aligned_cols=81  Identities=14%  Similarity=0.201  Sum_probs=44.2

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      ..++||||+|...                 +.|.+|...             .+-..+|+|+++..++.|+++++     
T Consensus       103 ~v~glDIGTGAsc-----------------IYpLLg~~~-------------~~W~fvaTdID~~sl~~A~~nv~-----  147 (299)
T PF05971_consen  103 KVRGLDIGTGASC-----------------IYPLLGAKL-------------YGWSFVATDIDPKSLESARENVE-----  147 (299)
T ss_dssp             --EEEEES-TTTT-----------------HHHHHHHHH-------------H--EEEEEES-HHHHHHHHHHHH-----
T ss_pred             ceEeecCCccHHH-----------------HHHHHhhhh-------------cCCeEEEecCCHHHHHHHHHHHH-----
Confidence            4579999888743                 346555322             24479999999999999999998     


Q ss_pred             cccccccceecceeeeeecccc-CCCCCCeeEEecccCC-----CCCCCCceeEEeeeehhhc
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEE-----LPIESDSYSAYTIAFGIRN  180 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~-----~~~~~~~~D~V~~~~~l~~  180 (241)
                                          +. ++. .+++++...-..     +..+.+.||..+|+--++.
T Consensus       148 --------------------~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  148 --------------------RNPNLE-SRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             --------------------HT-T-T-TTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred             --------------------hccccc-cceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence                                44 554 567666543221     1123468999998765553

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.11  E-value=0.45  Score=45.77  Aligned_cols=88  Identities=15%  Similarity=0.226  Sum_probs=56.9

Q ss_pred             hHHHHHhhhhhccccchhh--hhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDA--MSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      .+..+|+.+...|+.....  -.+.-.+...+.+.+.+.+.+..+|+|..||+|.+.             .+....++  
T Consensus       145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l-------------~~a~~~~~--  209 (489)
T COG0286         145 LFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGML-------------LQAAKYLK--  209 (489)
T ss_pred             chhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHH-------------HHHHHHHH--
Confidence            3455566666655553211  112223445677777777777779999999999876             44444222  


Q ss_pred             hhcCCCcchhhhccc-CCCceeecCChHhHHHHHHHHh
Q psy1420          82 IAGQWKPYQYLVESI-RQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                        .          +. ...++|.|.++.....++.+.-
T Consensus       210 --~----------~~~~~~~yGqE~~~~t~~l~~mN~~  235 (489)
T COG0286         210 --R----------HQDEIFIYGQEINDTTYRLAKMNLI  235 (489)
T ss_pred             --h----------hccceeEEEEeCCHHHHHHHHHHHH
Confidence              1          12 3679999999999999988876

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.97  E-value=0.16  Score=48.57  Aligned_cols=75  Identities=19%  Similarity=0.192  Sum_probs=56.0

Q ss_pred             CCceeEEeeeehhhccc---cHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEec--CceeEEEee
Q psy1420         166 SDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLT--FGVVAIHSG  238 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~  238 (241)
                      +.+||+|.+...+....   +.+..|-++-|+|+|||.+++-+...  .+++.++.+...+........  .+--.+.++
T Consensus       425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~  504 (506)
T PF03141_consen  425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILIC  504 (506)
T ss_pred             CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEE
Confidence            57899999887776543   56799999999999999999987666  888888888887654443332  344556555


Q ss_pred             ec
Q psy1420         239 FK  240 (241)
Q Consensus       239 ~~  240 (241)
                      .|
T Consensus       505 ~K  506 (506)
T PF03141_consen  505 QK  506 (506)
T ss_pred             EC
Confidence            54

; GO: 0008168 methyltransferase activity

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=94.96  E-value=1.4  Score=38.43  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC-CCceeEEee
Q psy1420          97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE-SDSYSAYTI  174 (241)
Q Consensus        97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~~D~V~~  174 (241)
                      ..+++.+|+++..++...+.+.                         +.+++   ++....|+... |.+ .++||++++
T Consensus        67 ~~~I~VvDiDeRll~fI~~~a~-------------------------~~gl~---i~~~~~DlR~~LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   67 PKRITVVDIDERLLDFINRVAE-------------------------EEGLP---IEAVHYDLRDPLPEELRGKFDVFFT  118 (243)
T ss_dssp             -SEEEEE-S-HHHHHHHHHHHH-------------------------HHT-----EEEE---TTS---TTTSS-BSEEEE
T ss_pred             CCeEEEEEcCHHHHHHHHHHHH-------------------------HcCCc---eEEEEecccccCCHHHhcCCCEEEe
Confidence            4579999999999999999988                         66766   88888888764 322 579999986


Q ss_pred             eehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEe
Q psy1420         175 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       175 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .- -...+-..-++++....||..|-.....+++        .++++.+.+.||.+.++..-
T Consensus       119 DP-PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~  179 (243)
T PF01861_consen  119 DP-PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPD  179 (243)
T ss_dssp             ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEE
T ss_pred             CC-CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhh
Confidence            31 1122345678888899998766322223332        46788899999998877643

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.90  E-value=0.043  Score=42.16  Aligned_cols=59  Identities=19%  Similarity=0.365  Sum_probs=37.9

Q ss_pred             ceeEEeeeehhhcc--c----cHHHHHHHHHHhccCCcEEEEEecCH-------------------------HHHHHHHH
Q psy1420         168 SYSAYTIAFGIRNV--T----RIDKALSEAYRVLKPGGRFLCLEFSH-------------------------EEFKSMIE  216 (241)
Q Consensus       168 ~~D~V~~~~~l~~~--~----~~~~~l~~~~~~LkpgG~l~i~~~~~-------------------------~~~~~~l~  216 (241)
                      .||+|+|-.+.-++  +    -...+++.+++.|+|||+|++ +..+                         +.+.+.|.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~   79 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL   79 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence            48999987765433  1    246899999999999999987 3222                         66777777


Q ss_pred             H--CCCceEEEEE
Q psy1420         217 S--AGFQYVTYEN  227 (241)
Q Consensus       217 ~--~Gf~~~~~~~  227 (241)
                      +  .||..++...
T Consensus        80 ~~evGF~~~e~~~   92 (110)
T PF06859_consen   80 EPEVGFSSVEELG   92 (110)
T ss_dssp             STTT---EEEEE-
T ss_pred             hcccceEEEEEcc
Confidence            7  5888766443

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=94.89  E-value=0.051  Score=42.52  Aligned_cols=43  Identities=12%  Similarity=0.074  Sum_probs=33.0

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +++|+|||.|..+             ..++.    .             ....+++++|+++.+.+.+++++.
T Consensus         1 ~vlDiGa~~G~~~-------------~~~~~----~-------------~~~~~v~~~E~~~~~~~~l~~~~~   43 (143)
T TIGR01444         1 VVIDVGANIGDTS-------------LYFAR----K-------------GAEGRVIAFEPLPDAYEILEENVK   43 (143)
T ss_pred             CEEEccCCccHHH-------------HHHHH----h-------------CCCCEEEEEecCHHHHHHHHHHHH
Confidence            4899999999987             22222    0             023479999999999999998877

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.87  E-value=0.13  Score=45.07  Aligned_cols=120  Identities=15%  Similarity=0.179  Sum_probs=70.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|+|+|||.-.++                +|    ++..          .....|++.|++..+++.+.+-..   
T Consensus       104 ~~p~sVlDigCGlNPla----------------lp----~~~~----------~~~a~Y~a~DID~~~ve~l~~~l~---  150 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLA----------------LP----WMPE----------APGATYIAYDIDSQLVEFLNAFLA---  150 (251)
T ss_dssp             ---SEEEEET-TTCHHH----------------HH----TTTS----------STT-EEEEEESBHHHHHHHHHHHH---
T ss_pred             CCCchhhhhhccCCcee----------------hh----hccc----------CCCcEEEEEeCCHHHHHHHHHHHH---
Confidence            34679999999997666                33    1211          245689999999999999998877   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG  199 (241)
                                            ..+.   +.++...|...-+ +....|+.+.--.++.+....  ..++-+..+   +.
T Consensus       151 ----------------------~l~~---~~~~~v~Dl~~~~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~---~~  201 (251)
T PF07091_consen  151 ----------------------VLGV---PHDARVRDLLSDP-PKEPADLALLLKTLPCLERQRRGAGLELLDAL---RS  201 (251)
T ss_dssp             ----------------------HTT----CEEEEEE-TTTSH-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHS---CE
T ss_pred             ----------------------hhCC---CcceeEeeeeccC-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHh---CC
Confidence                                  3333   3566666766653 356789998776666544322  222222222   23


Q ss_pred             EEEEEecCH---------------HHHHHHHHHCCCceE
Q psy1420         200 RFLCLEFSH---------------EEFKSMIESAGFQYV  223 (241)
Q Consensus       200 ~l~i~~~~~---------------~~~~~~l~~~Gf~~~  223 (241)
                      ..++++|..               .+++..+...|..+.
T Consensus       202 ~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~  240 (251)
T PF07091_consen  202 PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD  240 (251)
T ss_dssp             SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred             CeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence            334434333               677777777777633

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=94.84  E-value=0.053  Score=45.80  Aligned_cols=97  Identities=11%  Similarity=0.107  Sum_probs=69.3

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      +.+.|+|+|+|-++             .         ++..          ...++++++.+|...+.+.+++.      
T Consensus        34 d~~~DLGaGsGiLs-------------~---------~Aa~----------~A~rViAiE~dPk~a~~a~eN~~------   75 (252)
T COG4076          34 DTFADLGAGSGILS-------------V---------VAAH----------AAERVIAIEKDPKRARLAEENLH------   75 (252)
T ss_pred             hceeeccCCcchHH-------------H---------HHHh----------hhceEEEEecCcHHHHHhhhcCC------
Confidence            58999999999988             1         2211          34579999999999888888765      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh--ccccHHHHHHHHHHhccCCcEEE
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--NVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~--~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                         -++..  +++++.+|+....+  ...|+|+|-..=.  -.+.....++.+...|+.++.++
T Consensus        76 -------------------v~g~~--n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          76 -------------------VPGDV--NWEVVVGDARDYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             -------------------CCCCc--ceEEEecccccccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence                               33443  78999999998876  3568888732111  12334577788888888888876

>PRK13699 putative methylase; Provisional

Probab=94.68  E-value=0.11  Score=44.79  Aligned_cols=76  Identities=21%  Similarity=0.376  Sum_probs=49.0

Q ss_pred             eEEecccCCC--CCCCCceeEEeee--ehh--hc-----c------ccHHHHHHHHHHhccCCcEEEEE-ecC-HHHHHH
Q psy1420         153 RFLEANAEEL--PIESDSYSAYTIA--FGI--RN-----V------TRIDKALSEAYRVLKPGGRFLCL-EFS-HEEFKS  213 (241)
Q Consensus       153 ~~~~~d~~~~--~~~~~~~D~V~~~--~~l--~~-----~------~~~~~~l~~~~~~LkpgG~l~i~-~~~-~~~~~~  213 (241)
                      ++.++|..+.  .++++++|+|+..  +.+  ..     +      .=....+.+++|+|||||.+++. .+. ...+..
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~   82 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMA   82 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHH
Confidence            3455665443  4556778888765  111  10     0      01257889999999999988763 222 256778


Q ss_pred             HHHHCCCceEEEEEe
Q psy1420         214 MIESAGFQYVTYENL  228 (241)
Q Consensus       214 ~l~~~Gf~~~~~~~~  228 (241)
                      .++++||.+....-|
T Consensus        83 al~~~GF~l~~~IiW   97 (227)
T PRK13699         83 AWKNAGFSVVGHLVF   97 (227)
T ss_pred             HHHHCCCEEeeEEEE
Confidence            889999987766555

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.64  E-value=0.22  Score=39.10  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=56.3

Q ss_pred             CeeEEecccCC-CCCCCCceeEEeeee-hhhccccH--HHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCceEEE
Q psy1420         151 RLRFLEANAEE-LPIESDSYSAYTIAF-GIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       151 ~~~~~~~d~~~-~~~~~~~~D~V~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~~~~~  225 (241)
                      .+++..+|+.+ ++--...+|+|+... +-..-+++  ...++.++++++|||.+.  +++. ..++..|.++||.+.+.
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a~~Vr~~L~~aGF~v~~~  109 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA--TYSSAGAVRRALQQAGFEVEKV  109 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--BHHHHHHHHHCTEEEEEE
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE--EeechHHHHHHHHHcCCEEEEc
Confidence            46777888754 222236899998542 21111221  589999999999999876  5554 88999999999997655


Q ss_pred             EEecCceeEEEeeecC
Q psy1420         226 ENLTFGVVAIHSGFKL  241 (241)
Q Consensus       226 ~~~~~~~~~~~~~~~~  241 (241)
                      . ..++--.+.+|.||
T Consensus       110 ~-g~g~Kr~~~~a~~~  124 (124)
T PF05430_consen  110 P-GFGRKREMLRAVKP  124 (124)
T ss_dssp             E--STTSSEEEEEEC-
T ss_pred             C-CCCCcchheEEEcC
Confidence            4 44667777777765

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG0822|consensus

Probab=94.49  E-value=0.11  Score=50.09  Aligned_cols=140  Identities=14%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             hHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC---CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP---THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ   80 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~   80 (241)
                      ..++.|+.-.-+|+...+        ...+.++++...   +...+|+-+|+|.|...             ...+.. ++
T Consensus       333 ~TYetFEkD~VKY~~Yq~--------Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv-------------~~~lka-a~  390 (649)
T KOG0822|consen  333 QTYETFEKDPVKYDQYQQ--------AILKALLDRVPDESAKTTTVIMVLGAGRGPLV-------------DASLKA-AE  390 (649)
T ss_pred             hhhhhhhccchHHHHHHH--------HHHHHHHhhCcccccCceEEEEEecCCCccHH-------------HHHHHH-HH
Confidence            344555544444544322        223444454332   12457899999999887             333331 00


Q ss_pred             hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC
Q psy1420          81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE  160 (241)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  160 (241)
                      ...            ...+++++|.+|.++......-                          ...+. ++++++..|..
T Consensus       391 ~~~------------RkVklyavEKNPNAivtL~~~n--------------------------~~~W~-~~Vtii~~DMR  431 (649)
T KOG0822|consen  391 ETD------------RKVKLYAVEKNPNAIVTLQNRN--------------------------FECWD-NRVTIISSDMR  431 (649)
T ss_pred             Hhc------------CceEEEEEecCcchhhhhhhhc--------------------------hhhhc-CeeEEEecccc
Confidence            110            3457899999999887766531                          12333 58999999999


Q ss_pred             CCCCCCCceeEEeeeehhhcccc---HHHHHHHHHHhccCCcEEEEEe
Q psy1420         161 ELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       161 ~~~~~~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ..+.+..+.|++++ ..|..+.|   -...|..+.+.|||+|+.+=..
T Consensus       432 ~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  432 KWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS  478 (649)
T ss_pred             ccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence            88744467898874 33444433   2478999999999999876443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.20  E-value=0.36  Score=41.20  Aligned_cols=108  Identities=10%  Similarity=0.114  Sum_probs=52.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++..|+|+|.-.|..+          .|+..++..++                ..++++++|+........  ..+.+  
T Consensus        32 kPd~IIE~Gi~~GGSl----------i~~A~ml~~~~----------------~~~~VigiDIdir~~~~~--a~e~h--   81 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSL----------IFWASMLELLG----------------GKGKVIGIDIDIRPHNRK--AIESH--   81 (206)
T ss_dssp             --SEEEEE--TTSHHH----------HHHHHHHHHTT-------------------EEEEEES-GTT--S---GGGG---
T ss_pred             CCCeEEEEecCCCchH----------HHHHHHHHHhC----------------CCceEEEEeCCcchhchH--HHhhc--
Confidence            3459999998888766          12233333211                457899999964433221  11211  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-------CC-CCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-------IE-SDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                                             ... ++++++++|.....       .. .....+|+ --+-|...+..+.|+....+
T Consensus        82 -----------------------p~~-~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~pl  136 (206)
T PF04989_consen   82 -----------------------PMS-PRITFIQGDSIDPEIVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPL  136 (206)
T ss_dssp             ---------------------------TTEEEEES-SSSTHHHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT
T ss_pred             -----------------------ccc-CceEEEECCCCCHHHHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCcc
Confidence                                   111 47999999876542       11 11223333 22334456778899999999


Q ss_pred             ccCCcEEEEEe
Q psy1420         195 LKPGGRFLCLE  205 (241)
Q Consensus       195 LkpgG~l~i~~  205 (241)
                      ++||+++++-+
T Consensus       137 v~~G~Y~IVeD  147 (206)
T PF04989_consen  137 VSPGSYLIVED  147 (206)
T ss_dssp             --TT-EEEETS
T ss_pred             CCCCCEEEEEe
Confidence            99999999855

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PTZ00357 methyltransferase; Provisional

Probab=92.98  E-value=0.37  Score=48.05  Aligned_cols=154  Identities=15%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             cchHHHHHhhhhhccccchhhhhhhhHHHHH-----------HHH------HhhcCC-C---CCCeEEEEecCCCcchhH
Q psy1420           2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWK-----------DIF------IDRLGP-T---HDTKLLDVAGGTDPLANL   60 (241)
Q Consensus         2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~-----------~~~------~~~l~~-~---~~~~vLdvG~G~G~~~~~   60 (241)
                      .+..+++|+.=.-+|+...+++...+.....           ..+      ++.... .   ....|+-+|+|.|.+.  
T Consensus       638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLV--  715 (1072)
T PTZ00357        638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLI--  715 (1072)
T ss_pred             chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHH--
Confidence            4578999999999999887776544322110           000      001111 1   1246899999999877  


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeee
Q psy1420          61 LFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT  140 (241)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (241)
                                 ...+..    .+..         ....+++++|.++.+......+....      -.|..         
T Consensus       716 -----------draLrA----ak~~---------gvkVrIyAVEKNPpAA~~tllr~~N~------eeW~n---------  756 (1072)
T PTZ00357        716 -----------DECLHA----VSAL---------GVRLRIFAIEKNLPAAAFTRMRWAND------PEWTQ---------  756 (1072)
T ss_pred             -----------HHHHHH----HHHc---------CCcEEEEEEecCcchHHHHHHHHhcc------ccccc---------
Confidence                       444441    1111         03457999999976554443332100      00110         


Q ss_pred             eccccCCCCCCeeEEecccCCCCCC-----------CCceeEEeeeehhhcccc---HHHHHHHHHHhccC----CcE
Q psy1420         141 RIDKIDIPNPRLRFLEANAEELPIE-----------SDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKP----GGR  200 (241)
Q Consensus       141 ~~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~Lkp----gG~  200 (241)
                         ......+.++++..|......+           -+++|+|++ ..|..+.|   -...|..+.+.||+    +|+
T Consensus       757 ---~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        757 ---LAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ---ccccCCCeEEEEeCcccccccccccccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence               0000113577888887765322           137899985 33433332   23678888888876    776

>KOG2793|consensus

Probab=92.79  E-value=1.3  Score=38.81  Aligned_cols=37  Identities=5%  Similarity=0.006  Sum_probs=31.7

Q ss_pred             eeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         169 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       169 ~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      +|+|+.+-++..-..+..+...+...|..+|.+++..
T Consensus       163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence            8999999999888888888999999999999665544

>KOG1596|consensus

Probab=92.75  E-value=0.27  Score=43.14  Aligned_cols=128  Identities=14%  Similarity=0.107  Sum_probs=81.5

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+..+|+.+||-+|++.|+..             .++..++|                +..-++++|.|+..-+.+...+
T Consensus       151 nihikpGsKVLYLGAasGttV-------------SHvSDiVG----------------peG~VYAVEfs~rsGRdL~nmA  201 (317)
T KOG1596|consen  151 NIHIKPGSKVLYLGAASGTTV-------------SHVSDIVG----------------PEGCVYAVEFSHRSGRDLINMA  201 (317)
T ss_pred             ceeecCCceEEEeeccCCcee-------------ehhhcccC----------------CCceEEEEEecccchHHHHHHh
Confidence            445689999999999999998             88888777                5678999999987655554443


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHH--H-HHHHH
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRID--K-ALSEA  191 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~--~-~l~~~  191 (241)
                      .                         +.    .++-.+..|+..+.   ..-.-+|+|++     .+..|+  . ..-++
T Consensus       202 k-------------------------kR----tNiiPIiEDArhP~KYRmlVgmVDvIFa-----Dvaqpdq~RivaLNA  247 (317)
T KOG1596|consen  202 K-------------------------KR----TNIIPIIEDARHPAKYRMLVGMVDVIFA-----DVAQPDQARIVALNA  247 (317)
T ss_pred             h-------------------------cc----CCceeeeccCCCchheeeeeeeEEEEec-----cCCCchhhhhhhhhh
Confidence            3                         11    24555666666542   11234677764     333332  2 23356


Q ss_pred             HHhccCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEe
Q psy1420         192 YRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .-.||+||.++++-...            +.-.+.|++..++..+.-++
T Consensus       248 ~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtL  296 (317)
T KOG1596|consen  248 QYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTL  296 (317)
T ss_pred             hhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecc
Confidence            67899999998864333            33345666666765544444

>KOG4058|consensus

Probab=92.66  E-value=2.5  Score=34.56  Aligned_cols=116  Identities=11%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +-.+.++..++.++.+|+|+|.|...             .....         .         ......|+|+++-.+..
T Consensus        62 ~nVLSll~~n~~GklvDlGSGDGRiV-------------laaar---------~---------g~~~a~GvELNpwLVay  110 (199)
T KOG4058|consen   62 ENVLSLLRGNPKGKLVDLGSGDGRIV-------------LAAAR---------C---------GLRPAVGVELNPWLVAY  110 (199)
T ss_pred             HHHHHHccCCCCCcEEeccCCCceee-------------hhhhh---------h---------CCCcCCceeccHHHHHH
Confidence            33455566677789999999999977             22222         1         23467899999998888


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      ++-.+-                         +.+.. +..+|..-|+....+.+  |..|+....-..+++.+.-   +.
T Consensus       111 srl~a~-------------------------R~g~~-k~trf~RkdlwK~dl~d--y~~vviFgaes~m~dLe~K---L~  159 (199)
T KOG4058|consen  111 SRLHAW-------------------------RAGCA-KSTRFRRKDLWKVDLRD--YRNVVIFGAESVMPDLEDK---LR  159 (199)
T ss_pred             HHHHHH-------------------------HHhcc-cchhhhhhhhhhccccc--cceEEEeehHHHHhhhHHH---HH
Confidence            776655                         44554 56788888877766543  4444443333334444332   33


Q ss_pred             HhccCCcEEEEEecCHHH
Q psy1420         193 RVLKPGGRFLCLEFSHEE  210 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~~~  210 (241)
                      .-|..|..++...|.-.+
T Consensus       160 ~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  160 TELPANTRVVACRFPLPT  177 (199)
T ss_pred             hhCcCCCeEEEEecCCCc
Confidence            356677788777666544

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=92.57  E-value=0.23  Score=46.22  Aligned_cols=105  Identities=13%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.++||.-+|+|-=+             .+++.    .+            ....+++.-|+++.+++.++++++    
T Consensus        49 ~~~~~lDalaasGvR~-------------iRy~~----E~------------~~~~~v~~NDi~~~a~~~i~~N~~----   95 (377)
T PF02005_consen   49 GPIRVLDALAASGVRG-------------IRYAK----EL------------AGVDKVTANDISPEAVELIKRNLE----   95 (377)
T ss_dssp             S-EEEEETT-TTSHHH-------------HHHHH----H-------------SSECEEEEEES-HHHHHHHHHHHH----
T ss_pred             CCceEEeccccccHHH-------------HHHHH----Hc------------CCCCEEEEecCCHHHHHHHHHhHh----
Confidence            4568999999999766             33333    11            134679999999999999999988    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                           -.++....+++.+.|+..+= .....||+|=.    .-+..+..+|+.+.+.++.||.|
T Consensus        96 ---------------------~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll  150 (377)
T PF02005_consen   96 ---------------------LNGLEDERIEVSNMDANVLLYSRQERFDVIDL----DPFGSPAPFLDSALQAVKDGGLL  150 (377)
T ss_dssp             ---------------------HCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------SS--HHHHHHHHHHEEEEEEE
T ss_pred             ---------------------hccccCceEEEehhhHHHHhhhccccCCEEEe----CCCCCccHhHHHHHHHhhcCCEE
Confidence                                 55555235778888877642 24578999843    44567789999999999999999


Q ss_pred             EEEe
Q psy1420         202 LCLE  205 (241)
Q Consensus       202 ~i~~  205 (241)
                      .++.
T Consensus       151 ~vTa  154 (377)
T PF02005_consen  151 CVTA  154 (377)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9865

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.11  E-value=0.84  Score=41.34  Aligned_cols=100  Identities=18%  Similarity=0.232  Sum_probs=61.4

Q ss_pred             CCceeecCCh--HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-------Cc
Q psy1420          98 QFPNQIDIPN--PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-------DS  168 (241)
Q Consensus        98 ~~~~~~D~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  168 (241)
                      ..++.+|+.+  ..+......+..-|+.+-    +   ..-.+........+   ++.|.+.|+..+..++       ..
T Consensus       131 l~itlvDiAdWs~VV~~L~~~i~s~p~~sk----~---a~~~~~~~~~~~~~---~~~F~~~DvL~~~~~~l~~ll~~~~  200 (315)
T PF11312_consen  131 LSITLVDIADWSSVVDRLTTTITSPPPLSK----Y---ASAANWPLIEPDRF---NVSFTQQDVLSLSEDDLKSLLGPPS  200 (315)
T ss_pred             ceEEEEEecChHHHHHHHHHhccCCCCccc----c---ccccccccCCccce---eeeEEecccccCChHHHHHHhccch
Confidence            4789999986  355666666553322221    1   00000011112222   4788999988775321       24


Q ss_pred             eeEEeeeehhhc-----cccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420         169 YSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLEFS  207 (241)
Q Consensus       169 ~D~V~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~  207 (241)
                      .|+|...|.++.     +..--++|..+...++||..|+|++..
T Consensus       201 ~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp  244 (315)
T PF11312_consen  201 PDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP  244 (315)
T ss_pred             hHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence            688887777753     344568999999999999999998743

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.00  E-value=4.8  Score=35.64  Aligned_cols=109  Identities=18%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH-HhcC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN-AEEL  120 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~-~~~~  120 (241)
                      ..+...+|+|+|+..-+             +.++..++.    .         .....++.+|+|...++...+. ..+.
T Consensus        77 ~g~~~lveLGsGns~Kt-------------r~Llda~~~----~---------~~~~ryvpiDv~a~iL~~ta~ai~~~y  130 (321)
T COG4301          77 TGACTLVELGSGNSTKT-------------RILLDALAH----R---------GSLLRYVPIDVSASILRATATAILREY  130 (321)
T ss_pred             hCcceEEEecCCccHHH-------------HHHHHHhhh----c---------CCcceeeeecccHHHHHHHHHHHHHhC
Confidence            44678999999998877             444442221    1         1346799999999988664433 3311


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccc--cHHHHHHHHHHh
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRV  194 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~  194 (241)
                                              ++++   +.-+++|.+.    +| ..++-=.++...++.+++  +-..+|..+...
T Consensus       131 ------------------------~~l~---v~~l~~~~~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a  182 (321)
T COG4301         131 ------------------------PGLE---VNALCGDYELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGA  182 (321)
T ss_pred             ------------------------CCCe---EeehhhhHHHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhc
Confidence                                    1222   4445555442    23 112222344456677764  346889999999


Q ss_pred             ccCCcEEEEE
Q psy1420         195 LKPGGRFLCL  204 (241)
Q Consensus       195 LkpgG~l~i~  204 (241)
                      |.||-++++-
T Consensus       183 ~~pGd~~LlG  192 (321)
T COG4301         183 LRPGDYFLLG  192 (321)
T ss_pred             CCCcceEEEe
Confidence            9999998874

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.90  E-value=0.46  Score=43.59  Aligned_cols=97  Identities=12%  Similarity=0.142  Sum_probs=62.2

Q ss_pred             cCCCCCCeEEEEecC-CCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          39 LGPTHDTKLLDVAGG-TDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        39 l~~~~~~~vLdvG~G-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+.+|+.+|+-+|+| .|..+             .+++..                  ...+++++|.++.-.+.+++.-
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~a-------------vQ~Aka------------------~ga~Via~~~~~~K~e~a~~lG  210 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMA-------------VQYAKA------------------MGAEVIAITRSEEKLELAKKLG  210 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHH-------------HHHHHH------------------cCCeEEEEeCChHHHHHHHHhC
Confidence            345789999999987 22333             333331                  3478999999999998888653


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecc-cCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEAN-AEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK  196 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk  196 (241)
                      .                                 ..++... ....+.-.+.+|+|+..-     +  ...++...+.|+
T Consensus       211 A---------------------------------d~~i~~~~~~~~~~~~~~~d~ii~tv-----~--~~~~~~~l~~l~  250 (339)
T COG1064         211 A---------------------------------DHVINSSDSDALEAVKEIADAIIDTV-----G--PATLEPSLKALR  250 (339)
T ss_pred             C---------------------------------cEEEEcCCchhhHHhHhhCcEEEECC-----C--hhhHHHHHHHHh
Confidence            3                                 1233322 211111123489988533     2  567788888999


Q ss_pred             CCcEEEEEec
Q psy1420         197 PGGRFLCLEF  206 (241)
Q Consensus       197 pgG~l~i~~~  206 (241)
                      +||++.+.-.
T Consensus       251 ~~G~~v~vG~  260 (339)
T COG1064         251 RGGTLVLVGL  260 (339)
T ss_pred             cCCEEEEECC
Confidence            9999988643

>KOG3115|consensus

Probab=91.26  E-value=0.54  Score=40.26  Aligned_cols=35  Identities=26%  Similarity=0.239  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420         185 DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG  219 (241)
Q Consensus       185 ~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G  219 (241)
                      ...+++..-+|++||.++.++--.   ..+.+.+++.+
T Consensus       163 ~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp  200 (249)
T KOG3115|consen  163 STLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP  200 (249)
T ss_pred             hhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence            356777888999999988654222   44455555555

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=91.26  E-value=0.61  Score=40.55  Aligned_cols=56  Identities=13%  Similarity=0.203  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +....+|+|+|+|+|.++             ..++..+.+..   ++-|      ...++..+|.|+.+.+.-++.+.
T Consensus        16 p~~~~~ivE~GaG~G~La-------------~diL~~l~~~~---p~~~------~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   16 PSEPLRIVEIGAGRGTLA-------------RDILRYLRKFS---PEVY------KRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             -SS-EEEEEES-TTSHHH-------------HHHHHHHCCTT---HHHH------TTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             CCcCcEEEEECCCchHHH-------------HHHHHHHHHhC---hhhh------hcceEEEEcCCHHHHHHHHHHhh
Confidence            334579999999999999             55555222110   1000      24689999999999888877765

; PDB: 4F3N_A 1ZKD_B.

>PRK11524 putative methyltransferase; Provisional

Probab=90.56  E-value=1  Score=40.00  Aligned_cols=78  Identities=17%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             CeeEEecccCCC--CCCCCceeEEeee--ehhh--------------ccccHHHHHHHHHHhccCCcEEEEEecCH-HHH
Q psy1420         151 RLRFLEANAEEL--PIESDSYSAYTIA--FGIR--------------NVTRIDKALSEAYRVLKPGGRFLCLEFSH-EEF  211 (241)
Q Consensus       151 ~~~~~~~d~~~~--~~~~~~~D~V~~~--~~l~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~~~  211 (241)
                      ..+++++|..+.  .++++++|+|++.  +.+.              +..-....+.++.++|||||.+++..... -..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~~   87 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMPF   87 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhhH
Confidence            346777886663  3556789999984  3220              01113578899999999999998753222 223


Q ss_pred             HHHHHHCCCceEEEEEe
Q psy1420         212 KSMIESAGFQYVTYENL  228 (241)
Q Consensus       212 ~~~l~~~Gf~~~~~~~~  228 (241)
                      ..++...||......-|
T Consensus        88 ~~~~~~~~f~~~~~iiW  104 (284)
T PRK11524         88 IDLYCRKLFTIKSRIVW  104 (284)
T ss_pred             HHHHHhcCcceEEEEEE
Confidence            45666788876665544

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=90.43  E-value=1.8  Score=37.95  Aligned_cols=77  Identities=16%  Similarity=0.285  Sum_probs=48.0

Q ss_pred             ccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHH
Q psy1420         144 KIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIES  217 (241)
Q Consensus       144 ~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~  217 (241)
                      +.++..+++.++.+.+.+. | .+.+++  .+...-...-..-..+|+.++..|.|||++++=++..    +.+.+.+++
T Consensus       151 ~~gl~~~~v~~vkG~F~dTLp~~p~~~I--All~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~~~  228 (248)
T PF05711_consen  151 RYGLLDDNVRFVKGWFPDTLPDAPIERI--ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFRAE  228 (248)
T ss_dssp             CTTTSSTTEEEEES-HHHHCCC-TT--E--EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEECCcchhhhccCCCccE--EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHHHH
Confidence            4444446899999987643 3 122333  2222222334456789999999999999999988775    777788888


Q ss_pred             CCCce
Q psy1420         218 AGFQY  222 (241)
Q Consensus       218 ~Gf~~  222 (241)
                      .|...
T Consensus       229 ~gi~~  233 (248)
T PF05711_consen  229 HGITD  233 (248)
T ss_dssp             TT--S
T ss_pred             cCCCC
Confidence            88753

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG1099|consensus

Probab=90.11  E-value=0.58  Score=40.79  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             CeeEEecccCCCC--------CCCCceeEEeeee-----hhhccccH------HHHHHHHHHhccCCcEEEEE
Q psy1420         151 RLRFLEANAEELP--------IESDSYSAYTIAF-----GIRNVTRI------DKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       151 ~~~~~~~d~~~~~--------~~~~~~D~V~~~~-----~l~~~~~~------~~~l~~~~~~LkpgG~l~i~  204 (241)
                      .+.-+++|+....        +..++.|+|+|-.     ++|.+...      ..+|+-...+|||||.|+.-
T Consensus        90 GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen   90 GVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             ceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            4556777776643        3345789999864     45555432      46778888999999999853

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=89.96  E-value=0.43  Score=43.22  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+.+.+++.++|+=.|.|..+             ..++..+                 +...++++|.++.++
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS-------------~aiL~~~-----------------~~~~li~~DrD~~a~   57 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHS-------------KAILEKL-----------------PNGRLIGIDRDPEAL   57 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHH-------------HHHHHT------------------TT-EEEEEES-HHHH
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHH-------------HHHHHhC-----------------CCCeEEEecCCHHHH
Confidence            4566777788889999999999999988             5555411                 247899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----C-CCCceeEEeeeehh
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----I-ESDSYSAYTIAFGI  178 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~~~~~D~V~~~~~l  178 (241)
                      +.+.++..                         ..   .+++.++..++.++.     . ...++|-|+.-.++
T Consensus        58 ~~a~~~l~-------------------------~~---~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   58 ERAKERLK-------------------------KF---DDRFIFIHGNFSNLDEYLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             HHHHCCTC-------------------------CC---CTTEEEEES-GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred             HHHHHHHh-------------------------hc---cceEEEEeccHHHHHHHHHHccCCCccCEEEEcccc
Confidence            99987765                         22   146778888877653     2 23467777755443

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=89.00  E-value=0.57  Score=40.39  Aligned_cols=139  Identities=14%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +....+.++.|..||.|+..                 -++| ++.++          .-..+++.|+++.+++.|.++..
T Consensus        47 l~~~~p~tLyDPCCG~gyLL-----------------TVlG-LLh~~----------~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   47 LEGKGPYTLYDPCCGSGYLL-----------------TVLG-LLHRR----------RLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             SSS-S-EEEEETT-TTSHHH-----------------HHHH-HHTGG----------GEEEEEEEES-HHHHHHHHHHHH
T ss_pred             hcCCCCeeeeccCCCccHHH-----------------HHHH-HhhhH----------HHHhHhcccCCHHHHHHHHHhhh
Confidence            33455668999999999876                 3334 44433          34679999999999999999877


Q ss_pred             cCCCccccccccceec------------ceeeeeecc----ccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeeh
Q psy1420         119 ELPIESDSYSAYTIAF------------GIRNVTRID----KIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFG  177 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~------------~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~  177 (241)
                      -+..+.-+-+...+..            .....++..    ..|-. ......+.|+....     -.....|+|+.-.-
T Consensus        99 LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~-~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlP  177 (246)
T PF11599_consen   99 LLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGD-EPHAIFRADVFDPSPLAVLDAGFTPDIVITDLP  177 (246)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS---EEEEE--TT-HHHHHHHHTT---SEEEEE--
T ss_pred             hccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCC-CchhheeecccCCchhhhhccCCCCCEEEecCC
Confidence            4443332221111111            111111111    11111 12566777766521     11234699986532


Q ss_pred             hh---ccc------cHHHHHHHHHHhccCCcEEEEEec
Q psy1420         178 IR---NVT------RIDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       178 l~---~~~------~~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                      -.   .|.      ...+.|+.++.+|.+++++.+++-
T Consensus       178 YG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~k  215 (246)
T PF11599_consen  178 YGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSDK  215 (246)
T ss_dssp             CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEES
T ss_pred             CcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEecC
Confidence            22   222      236899999999965666666443

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK10742 putative methyltransferase; Provisional

Probab=88.76  E-value=1  Score=39.62  Aligned_cols=138  Identities=10%  Similarity=0.005  Sum_probs=78.5

Q ss_pred             HHHHhhcCCCCCC--eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          33 DIFIDRLGPTHDT--KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        33 ~~~~~~l~~~~~~--~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+-++.+++.  +|||+=+|+|..+             ..++.                   .++.++++|.++...
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da-------------~~las-------------------~G~~V~~vEr~p~va  123 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDA-------------FVLAS-------------------VGCRVRMLERNPVVA  123 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHH-------------HHHHH-------------------cCCEEEEEECCHHHH
Confidence            5566667777777  8999999999988             33333                   467799999999988


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc---cHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT---RIDK  186 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~---~~~~  186 (241)
                      ......+......                 ......+. .++++++.|.... ....++||+|+.-=...+-.   ...+
T Consensus       124 alL~dgL~ra~~~-----------------~~~~~~~~-~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk  185 (250)
T PRK10742        124 ALLDDGLARGYAD-----------------AEIGGWLQ-ERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKK  185 (250)
T ss_pred             HHHHHHHHHhhhc-----------------cccchhhh-ceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCCccccchhh
Confidence            8887777621000                 00000011 3577888886543 21234799998654433311   1223


Q ss_pred             HHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEE
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~  226 (241)
                      -|+.++.+...+      .-..+-++..++-+.-++|-..
T Consensus       186 ~mr~~~~l~g~d------~d~~~lL~~Al~~A~kRVVVKr  219 (250)
T PRK10742        186 EMRVFQSLVGPD------LDADGLLEPARLLATKRVVVKR  219 (250)
T ss_pred             hHHHHHHhcCCC------CChHHHHHHHHHhcCceEEEec
Confidence            344443333222      1223555666666665554333

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=88.29  E-value=3.8  Score=33.63  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             EecccCCCC----CCCCceeEEeeeehhhc---------c----ccHHHHHHHHHHhccCCcEEEEEecCH-----HHHH
Q psy1420         155 LEANAEELP----IESDSYSAYTIAFGIRN---------V----TRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFK  212 (241)
Q Consensus       155 ~~~d~~~~~----~~~~~~D~V~~~~~l~~---------~----~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~  212 (241)
                      ...|+..+.    ....+||.|+.++-...         +    .=...++..+.++|+++|.+.+.-...     -.++
T Consensus        58 ~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~  137 (166)
T PF10354_consen   58 HGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIE  137 (166)
T ss_pred             cCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHH
Confidence            345555543    23578999998764322         1    113588899999999999998864333     5778


Q ss_pred             HHHHHCCCceEEEEEec
Q psy1420         213 SMIESAGFQYVTYENLT  229 (241)
Q Consensus       213 ~~l~~~Gf~~~~~~~~~  229 (241)
                      .+.+.+||...+.....
T Consensus       138 ~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen  138 ELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             HHHHhcCCEEEEEecCC
Confidence            99999999988876653

>KOG2539|consensus

Probab=87.65  E-value=1.8  Score=41.28  Aligned_cols=87  Identities=16%  Similarity=0.128  Sum_probs=54.0

Q ss_pred             cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC--CCCCC-CCceeEE
Q psy1420          96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE--ELPIE-SDSYSAY  172 (241)
Q Consensus        96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~-~~~~D~V  172 (241)
                      ....++.+|.+..|..........                      ....+    ...+....+.  .+|.. ...||+|
T Consensus       225 t~~~~~~Vdrs~~~~~~~e~~lr~----------------------~~~~g----~~~v~~~~~~r~~~pi~~~~~yDlv  278 (491)
T KOG2539|consen  225 TKREYSLVDRSRAMLKQSEKNLRD----------------------GSHIG----EPIVRKLVFHRQRLPIDIKNGYDLV  278 (491)
T ss_pred             ccceeEeeccchHHHHHHHHhhcC----------------------hhhcC----chhccccchhcccCCCCcccceeeE
Confidence            567899999999999888877651                      00111    1111110111  12333 3469999


Q ss_pred             eeeehhhccccH----HHHHHHHHHhccCCcEEEEEecCH
Q psy1420         173 TIAFGIRNVTRI----DKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       173 ~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ++++.+++....    ...-+...+..++|+++++++-+.
T Consensus       279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence            999999876544    233344455778899999887665

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.08  E-value=2.9  Score=38.38  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=19.4

Q ss_pred             ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         182 TRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       182 ~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .+....++++.+.++|+|+++...
T Consensus       283 ~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         283 TDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             cCchHHHHHHHHHhccCCEEEEEc
Confidence            345678899999999999988753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=86.37  E-value=1.3  Score=34.10  Aligned_cols=18  Identities=17%  Similarity=0.230  Sum_probs=14.5

Q ss_pred             CCCCCeEEEEecCCCcch
Q psy1420          41 PTHDTKLLDVAGGTDPLA   58 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~   58 (241)
                      ..+....+|+|||+|.+.
T Consensus        56 ~~~~~~FVDlGCGNGLLV   73 (112)
T PF07757_consen   56 EQKFQGFVDLGCGNGLLV   73 (112)
T ss_pred             CCCCCceEEccCCchHHH
Confidence            345567999999999877

; GO: 0008168 methyltransferase activity

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=86.12  E-value=13  Score=34.37  Aligned_cols=63  Identities=10%  Similarity=0.004  Sum_probs=38.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecC----Ch
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDI----PN  107 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~----s~  107 (241)
                      ...+++-+...+..+|+|+|.|.|.=-             -.++.    .++..++.      .+..++++++.    +.
T Consensus        99 NqaIleA~~g~~~vHIID~~i~~G~QW-------------~~Liq----aLa~R~~g------pp~LrIT~i~~~~~~~~  155 (374)
T PF03514_consen   99 NQAILEAFEGERRVHIIDFGIGFGVQW-------------PSLIQ----ALASRPGG------PPSLRITGIGPPNSGSA  155 (374)
T ss_pred             hHHHHHHhccCcceEEEeccCCcchHH-------------HHHHH----HHhcCCCC------CCeEEEEeccCCCCCcH
Confidence            456667666677889999999988522             22233    23332210      14668999998    55


Q ss_pred             HhHHHHHHHH
Q psy1420         108 PRLRFLEANA  117 (241)
Q Consensus       108 ~~~~~~~~~~  117 (241)
                      ..++...+++
T Consensus       156 ~~l~~~g~rL  165 (374)
T PF03514_consen  156 DELQETGRRL  165 (374)
T ss_pred             HHHHHHHHHH
Confidence            5555554443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>KOG2671|consensus

Probab=85.66  E-value=1  Score=41.51  Aligned_cols=110  Identities=21%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH------
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL------  113 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~------  113 (241)
                      ..++|.-|+|-=.|||.+.             ...+.                   -++.+.|.|++-.++...      
T Consensus       205 mv~pGdivyDPFVGTGslL-------------vsaa~-------------------FGa~viGtDIDyr~vragrg~~~s  252 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLL-------------VSAAH-------------------FGAYVIGTDIDYRTVRAGRGEDES  252 (421)
T ss_pred             ccCCCCEEecCccccCcee-------------eehhh-------------------hcceeeccccchheeecccCCCcc
Confidence            4578999999999999876             22222                   356799999988877743      


Q ss_pred             -HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeee--ehhhc---------
Q psy1420         114 -EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIA--FGIRN---------  180 (241)
Q Consensus       114 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~--~~l~~---------  180 (241)
                       +++..                         +-+..+.-+.++.+|+...|+.. ..||+|+|-  ++++.         
T Consensus       253 i~aNFk-------------------------QYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~  307 (421)
T KOG2671|consen  253 IKANFK-------------------------QYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKK  307 (421)
T ss_pred             hhHhHH-------------------------HhCCcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccC
Confidence             22332                         22333345788889988888654 489999974  33321         


Q ss_pred             -------------cc---------cHHHHHHHHHHhccCCcEEEEEec
Q psy1420         181 -------------VT---------RIDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       181 -------------~~---------~~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                                   .+         -....|.-.++.|..||++.+.-.
T Consensus       308 ~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  308 SVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             cccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence                         11         013566777889999999988643

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=84.18  E-value=12  Score=33.08  Aligned_cols=42  Identities=14%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +++|+-||.|..+             ..+..                  .....+.++|+++.+.+..+.+..
T Consensus         2 ~v~dLFsG~Gg~~-------------~gl~~------------------~G~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFR-------------LGLEK------------------AGFEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHH-------------HHHHH------------------cCCEEEEEEeCCHHHHHHHHHhCC
Confidence            6899999999887             22222                  023457899999999988877754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=83.24  E-value=3.6  Score=38.05  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=40.7

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      .+.+...+...++|+|.|+|.++             ..++..+.++   .|+-|      ...++..+|+|+...+.-++
T Consensus        70 wq~~g~p~~~~lvEiGaG~G~l~-------------~DiL~~l~~L---~P~~~------~~~~~~iiE~s~~L~~~Qk~  127 (370)
T COG1565          70 WQELGRPAPLKLVEIGAGRGTLA-------------SDILRTLRRL---YPELY------EALSYYIIEPSPELRARQKE  127 (370)
T ss_pred             HHHhcCCCCceEEEeCCCcChHH-------------HHHHHHHHHh---CHHHH------hcceEEEEecCHHHHHHHHH
Confidence            34445556678999999999998             5554422221   11111      35689999999998888777


Q ss_pred             HHh
Q psy1420         116 NAE  118 (241)
Q Consensus       116 ~~~  118 (241)
                      ...
T Consensus       128 ~L~  130 (370)
T COG1565         128 TLK  130 (370)
T ss_pred             HHh
Confidence            766

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=83.23  E-value=2.4  Score=34.97  Aligned_cols=61  Identities=18%  Similarity=0.179  Sum_probs=41.0

Q ss_pred             CCceeEEeeeehhhccc-----c---H---HHHHHHHHHhccCCcEEEEEecCH------------HHHHHHHHHCCCce
Q psy1420         166 SDSYSAYTIAFGIRNVT-----R---I---DKALSEAYRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQY  222 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~-----~---~---~~~l~~~~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~  222 (241)
                      .++||.+.|..++.|+.     |   |   .+++.++.++|||||.|++...-.            ...+=.+--.||++
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~  140 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW  140 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence            46799988887776542     2   2   588999999999999999854222            33333444567776


Q ss_pred             EEEE
Q psy1420         223 VTYE  226 (241)
Q Consensus       223 ~~~~  226 (241)
                      +...
T Consensus       141 i~tf  144 (177)
T PF03269_consen  141 IDTF  144 (177)
T ss_pred             Eeee
Confidence            6543

>PRK11524 putative methyltransferase; Provisional

Probab=83.15  E-value=1.7  Score=38.54  Aligned_cols=45  Identities=11%  Similarity=-0.005  Sum_probs=37.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ++|..|||.=+|+|+++             .....                   .+..++|+|+++...+.+.+++.
T Consensus       207 ~~GD~VLDPF~GSGTT~-------------~AA~~-------------------lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTG-------------AVAKA-------------------SGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             CCCCEEEECCCCCcHHH-------------HHHHH-------------------cCCCEEEEeCCHHHHHHHHHHHH
Confidence            68889999999999988             22222                   57789999999999999999876

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=82.47  E-value=3.2  Score=36.38  Aligned_cols=47  Identities=17%  Similarity=0.245  Sum_probs=33.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      .++.++||+|.|.-  .               +.|.+|..     +        ..-..+|.|+++..++.|+..+.
T Consensus        77 ~~~i~~LDIGvGAn--C---------------IYPliG~~-----e--------YgwrfvGseid~~sl~sA~~ii~  123 (292)
T COG3129          77 GKNIRILDIGVGAN--C---------------IYPLIGVH-----E--------YGWRFVGSEIDSQSLSSAKAIIS  123 (292)
T ss_pred             cCceEEEeeccCcc--c---------------ccccccce-----e--------ecceeecCccCHHHHHHHHHHHH
Confidence            45667899977653  2               34655532     1        45578999999999999999887

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=82.24  E-value=2.9  Score=38.11  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=58.4

Q ss_pred             cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee
Q psy1420          96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA  175 (241)
Q Consensus        96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~  175 (241)
                      ....++..|.|...++.......                               .++..+..+...+...-.+.|+++..
T Consensus       190 lgA~Vtild~n~~rl~~ldd~f~-------------------------------~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         190 LGADVTILDLNIDRLRQLDDLFG-------------------------------GRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             cCCeeEEEecCHHHHhhhhHhhC-------------------------------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            36789999999888877765544                               45777777766664444578999877


Q ss_pred             ehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         176 FGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       176 ~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                      -.+---..|.-..+++.+.||||+.++
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCCcEEE
Confidence            666667788889999999999999887

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=82.08  E-value=1.2  Score=37.00  Aligned_cols=50  Identities=14%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++.. ..++..|||.=||+|+++             .....                   .+.+.+|+|+++...+.
T Consensus       182 ~~lI~~~-t~~gdiVlDpF~GSGTT~-------------~aa~~-------------------l~R~~ig~E~~~~y~~~  228 (231)
T PF01555_consen  182 ERLIKAS-TNPGDIVLDPFAGSGTTA-------------VAAEE-------------------LGRRYIGIEIDEEYCEI  228 (231)
T ss_dssp             HHHHHHH-S-TT-EEEETT-TTTHHH-------------HHHHH-------------------TT-EEEEEESSHHHHHH
T ss_pred             HHHHHhh-hccceeeehhhhccChHH-------------HHHHH-------------------cCCeEEEEeCCHHHHHH
Confidence            4444333 367889999999999988             33333                   46789999999999888


Q ss_pred             HHH
Q psy1420         113 LEA  115 (241)
Q Consensus       113 ~~~  115 (241)
                      |.+
T Consensus       229 a~~  231 (231)
T PF01555_consen  229 AKK  231 (231)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            753

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1501|consensus

Probab=81.50  E-value=1.7  Score=41.32  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=32.7

Q ss_pred             eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      .+||+|+|||.++                      +++-..         ....+++++.-..|...+++...
T Consensus        69 ~vLdigtGTGLLS----------------------mMAvra---------gaD~vtA~EvfkPM~d~arkI~~  110 (636)
T KOG1501|consen   69 FVLDIGTGTGLLS----------------------MMAVRA---------GADSVTACEVFKPMVDLARKIMH  110 (636)
T ss_pred             EEEEccCCccHHH----------------------HHHHHh---------cCCeEEeehhhchHHHHHHHHHh
Confidence            4899999999887                      222111         24569999999999999999988

>KOG0024|consensus

Probab=81.30  E-value=10  Score=34.83  Aligned_cols=105  Identities=16%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      +...+++.+||-+|+|+=....            ..++..+                 ...++..+|+++..++.|++.-
T Consensus       164 ~~~vk~Gs~vLV~GAGPIGl~t------------~l~Aka~-----------------GA~~VVi~d~~~~Rle~Ak~~G  214 (354)
T KOG0024|consen  164 RAGVKKGSKVLVLGAGPIGLLT------------GLVAKAM-----------------GASDVVITDLVANRLELAKKFG  214 (354)
T ss_pred             hcCcccCCeEEEECCcHHHHHH------------HHHHHHc-----------------CCCcEEEeecCHHHHHHHHHhC
Confidence            3445789999999998732221            2222322                 3568999999999999998732


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEec--ccCCC------CCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA--NAEEL------PIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~------~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      .                             .  .+.....  +...+      ......+|..+.+.+++      ..++
T Consensus       215 a-----------------------------~--~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~------~~~~  257 (354)
T KOG0024|consen  215 A-----------------------------T--VTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAE------VTIR  257 (354)
T ss_pred             C-----------------------------e--EEeeccccccHHHHHHHHHhhccccCCCeEEEccCch------HHHH
Confidence            1                             0  0000000  00110      11223478888776664      4566


Q ss_pred             HHHHhccCCcEEEEEecCH
Q psy1420         190 EAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~  208 (241)
                      .....+++||.+.+..+..
T Consensus       258 aai~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  258 AAIKATRSGGTVVLVGMGA  276 (354)
T ss_pred             HHHHHhccCCEEEEeccCC
Confidence            6678899999988877655

>KOG1227|consensus

Probab=80.72  E-value=1.3  Score=40.03  Aligned_cols=98  Identities=18%  Similarity=0.233  Sum_probs=62.2

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +-.|+|+=+|-|+++                +|              +|+......++++|.+|..++..+++++     
T Consensus       195 ~eviVDLYAGIGYFT----------------lp--------------flV~agAk~V~A~EwNp~svEaLrR~~~-----  239 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFT----------------LP--------------FLVTAGAKTVFACEWNPWSVEALRRNAE-----  239 (351)
T ss_pred             cchhhhhhcccceEE----------------ee--------------hhhccCccEEEEEecCHHHHHHHHHHHH-----
Confidence            357999999999999                22              1222246789999999999999999988     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE-EE
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR-FL  202 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~-l~  202 (241)
                                          ...+. ++...+.+|-..+ .+....|.|...    -+|.-++--..+.++|||.|- ++
T Consensus       240 --------------------~N~V~-~r~~i~~gd~R~~-~~~~~AdrVnLG----LlPSse~~W~~A~k~Lk~eggsil  293 (351)
T KOG1227|consen  240 --------------------ANNVM-DRCRITEGDNRNP-KPRLRADRVNLG----LLPSSEQGWPTAIKALKPEGGSIL  293 (351)
T ss_pred             --------------------hcchH-HHHHhhhcccccc-Cccccchheeec----cccccccchHHHHHHhhhcCCcEE
Confidence                                43333 3455555554443 234456666532    234444444456677777543 44

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=80.57  E-value=12  Score=34.17  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccC-C-CCCC-CCceeEE
Q psy1420          97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAE-E-LPIE-SDSYSAY  172 (241)
Q Consensus        97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~-~~~~D~V  172 (241)
                      ...++.+|.++..++.|++....                        .      .+..... +.. . .... ...+|++
T Consensus       193 a~~Viv~d~~~~Rl~~A~~~~g~------------------------~------~~~~~~~~~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         193 ASVVIVVDRSPERLELAKEAGGA------------------------D------VVVNPSEDDAGAEILELTGGRGADVV  242 (350)
T ss_pred             CceEEEeCCCHHHHHHHHHhCCC------------------------e------EeecCccccHHHHHHHHhCCCCCCEE
Confidence            46899999999999999874330                        0      0000000 000 0 0111 2368999


Q ss_pred             eeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      +-+.+      ...++..+.++++|||.+.+.-...
T Consensus       243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         243 IEAVG------SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             EECCC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence            97666      2347888999999999998875543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=80.22  E-value=9.4  Score=37.02  Aligned_cols=40  Identities=15%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                      ..+|+|+.+-+...-+.+.-..+++.+.+||||.++.+..
T Consensus       247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            3589999877664444554446999999999999886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1xxl_A	239	The Crystal Structure Of Ycgj Protein From Bacillus		2e-04

>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205
           +RF +  AE LP   DS+   T  +   + + + KA+ E  RVLK  GRFL ++
Sbjct: 71  VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	9e-36
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-33
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	7e-32
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	2e-10
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-31
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-29
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	7e-26
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	2e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	1e-25
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	4e-23
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-21
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-18
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-17
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-16
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	6e-16
3i9f_A	170	Putative type 11 methyltransferase; structural gen	7e-15
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-12
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	6e-12
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	8e-12
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-11
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	4e-10
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-09
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-09
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-09
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-09
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	4e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-09
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-08
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	1e-08
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-08
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-08
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	4e-08
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	6e-08
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	9e-07
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	1e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	1e-05
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	8e-05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	8e-05
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	1e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	4e-04
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	4e-04
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	7e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	8e-04

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score =  126 bits (318), Expect = 9e-36
 Identities = 39/252 (15%), Positives = 74/252 (29%), Gaps = 94/252 (37%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDI--FIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           ++  +    Y      ++  IH    D+   +       + ++LDVA G   +A      
Sbjct: 5   KIHHHHHHMY------VTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVA------ 52

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
                      P + +++A                    D+    L+   A  E      
Sbjct: 53  -------NAFAPFVKKVVA-------------------FDLTEDILKVARAFIEGN---- 82

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
                     G + V              +++ +AE++P   + +   T      +    
Sbjct: 83  ----------GHQQVE-------------YVQGDAEQMPFTDERFHIVTCRIAAHHFPNP 119

Query: 185 DKALSEAYRVLKPGGRFLCLEFSH---------------------------EEFKSMIES 217
              +SEAYRVLK GG+ L ++ S                             ++  M+E 
Sbjct: 120 ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEE 179

Query: 218 AGFQYVTYENLT 229
           AGF+        
Sbjct: 180 AGFELEELHCFH 191

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score =  119 bits (301), Expect = 1e-33
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 80/253 (31%)

Query: 3   LPMYEVFE-NVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLL 61
           + +   F+ +  K  D  +    F   ++ K       G      +LDV  G       L
Sbjct: 1   MSLAHKFDPSKIKKLDDPSRLELFDPEKVLK-----EFGLKEGMTVLDVGTGA---GFYL 52

Query: 62  FVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121
             L         V    G++ A                   ID+    + +      +L 
Sbjct: 53  PYLSK------MVGE-KGKVYA-------------------IDVQEEMVNYAWEKVNKL- 85

Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 181
                        G++NV               L++   ++P+  ++     +AF    +
Sbjct: 86  -------------GLKNVE-------------VLKSEENKIPLPDNTVDFIFMAFTFHEL 119

Query: 182 TRIDKALSEAYRVLKPGGRFLCLEFSH---------------EEFKSMIESAGFQYVTYE 226
           +   K L E  RV KP      +++                  E   ++E AG +     
Sbjct: 120 SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179

Query: 227 NL---TFGVVAIH 236
            +    FGV A+ 
Sbjct: 180 EVGKYCFGVYAMI 192

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 65  RAYDQYSF-QVIPVMGQLIAGQWKPYQYLVESIRQFPNQ 102
             Y ++    ++   G  +    +  +Y          Q
Sbjct: 157 EVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQ 195

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score =  115 bits (290), Expect = 7e-32
 Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 46/134 (34%)

Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEF 206
            +  F   NA  L     S+    +   + +V       + + E +RVLKPG     +EF
Sbjct: 83  GKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142

Query: 207 SH-------------------------------------------EEFKSMIESAGFQYV 223
                                                        +E   ++    F+  
Sbjct: 143 GQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEID 202

Query: 224 TYENLTFGVVAIHS 237
            +          + 
Sbjct: 203 YFRVKELETRTGNK 216

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 2/38 (5%)

Query: 65  RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQ 102
           R    + F +    G  +A    P     E I     +
Sbjct: 152 RKRYLHDFPITKEEGSFLARD--PETGETEFIAHHFTE 187

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score =  114 bits (287), Expect = 3e-31
 Identities = 37/231 (16%), Positives = 64/231 (27%), Gaps = 86/231 (37%)

Query: 23  MSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82
           M+   H     + I       + ++LD+  G    A                 P + + I
Sbjct: 1   MAHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTA-------------LAFSPYVQECI 47

Query: 83  AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 142
                               +D     +    + A+E               G+ NV   
Sbjct: 48  G-------------------VDATKEMVEVASSFAQEK--------------GVENVR-- 72

Query: 143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202
                      F +  AE LP   DS+   T  +   + + + KA+ E  RVLK  GRFL
Sbjct: 73  -----------FQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121

Query: 203 CLEFSH---------------------------EEFKSMIESAGFQYVTYE 226
            ++                               E+++M  +    Y   +
Sbjct: 122 LVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score =  107 bits (270), Expect = 4e-29
 Identities = 33/255 (12%), Positives = 68/255 (26%), Gaps = 90/255 (35%)

Query: 9   FENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYD 68
            +  AK+ D ++  +   I+ +  +  I+R G T  T  +D+  G   L+  L   +  D
Sbjct: 10  DKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIAL--AKQSD 66

Query: 69  QYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYS 128
                       + A                   +D           N  +         
Sbjct: 67  ----------FSIRA-------------------LDFSKHMNEIALKNIADA-------- 89

Query: 129 AYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 188
                  + +            R++ ++ +   +PIE +          +     +  A 
Sbjct: 90  ------NLND------------RIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAF 131

Query: 189 SEAYRVLKPGGRFLCLE--------------------------------FSHEEFKSMIE 216
            E YR+LK GG+                                      + E F+++++
Sbjct: 132 REIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLD 191

Query: 217 SAGFQYVTYENLTFG 231
             G           G
Sbjct: 192 EIGISSYEIILGDEG 206

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score =  100 bits (251), Expect = 7e-26
 Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 74/229 (32%)

Query: 1   MKLPMYEVFENVAKSYDTMNDAMSFGI-HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLAN 59
           MKL  +E ++ +A++YD+M +   + + HRL      + L      ++LD+ GGT   + 
Sbjct: 13  MKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKN--PCRVLDLGGGTGKWSL 70

Query: 60  LLFVLRAYDQYSFQVIPV---MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116
            L       +  F+V+ V      L   + K                         +EA 
Sbjct: 71  FL------QERGFEVVLVDPSKEMLEVAREK--------------------GVKNVVEAK 104

Query: 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF 176
           AE+LP  S ++               + +                            +  
Sbjct: 105 AEDLPFPSGAF---------------EAV--------------------------LALGD 123

Query: 177 GIRNVTRIDKALSEAYRVLKPGGRFLCLEFS-HEEFKSMIESAGFQYVT 224
            +  V   DKA SE  RVL P G  +    + +   + MIE   +  +T
Sbjct: 124 VLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQIT 172

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 5/43 (11%), Positives = 14/43 (32%)

Query: 62  FVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID 104
           F+ +  ++ ++  I    +          +   S    P  +D
Sbjct: 158 FLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLD 200

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 98.7 bits (246), Expect = 1e-25
 Identities = 33/207 (15%), Positives = 58/207 (28%), Gaps = 73/207 (35%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
           + F ++A++Y+              ++  +  L P  +  LL+V  GT      L  L  
Sbjct: 1   DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGE-SLLEVGAGT---GYWLRRLPY 56

Query: 67  YDQYSFQVIPV---MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123
                 Q + V      L  G+ +                    P   ++ A  E LP  
Sbjct: 57  P-----QKVGVEPSEAMLAVGRRR-------------------APEATWVRAWGEALPFP 92

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
            +S+               D                              +   +  V  
Sbjct: 93  GESF---------------D---------------------------VVLLFTTLEFVED 110

Query: 184 IDKALSEAYRVLKPGGRFLCLEFSHEE 210
           +++ L EA RVL+PGG  +        
Sbjct: 111 VERVLLEARRVLRPGGALVVGVLEALS 137

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 92.5 bits (230), Expect = 4e-23
 Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 48/252 (19%)

Query: 5   MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
           +   F+ V+  YD             +          T +  +LD+  GT  L+  L  +
Sbjct: 6   IKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFL--M 63

Query: 65  RAYDQYSFQVI---PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121
             Y + +F ++     M             L  +  +F       N +++++EA+  +  
Sbjct: 64  EKYPEATFTLVDMSEKM-------------LEIAKNRFRG-----NLKVKYIEADYSKYD 105

Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDI---------PNPRLRFLEANAEELPIESDSYSAY 172
            E + Y     A  I ++   DK ++          +      +    E     +     
Sbjct: 106 FE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTI 164

Query: 173 TIAFGIRNVTRIDKALS--EAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVT--YENL 228
              +   +    ++  +  E  ++ K             +  + ++ AGF+ V+  Y+  
Sbjct: 165 WRQYVENSGLTEEEIAAGYERSKLDKD--------IEMNQQLNWLKEAGFRDVSCIYKYY 216

Query: 229 TFGVVAIHSGFK 240
            F   A+  G K
Sbjct: 217 QF---AVMFGRK 225

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 88.5 bits (219), Expect = 2e-21
 Identities = 30/204 (14%), Positives = 54/204 (26%), Gaps = 60/204 (29%)

Query: 7   EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
                 A +YD +         ++   +         +   L++  GT  +A L  + R 
Sbjct: 3   SALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA-LPLIARG 61

Query: 67  YDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126
           Y          +                        +D     L         +      
Sbjct: 62  YR--------YIA-----------------------LDADAAMLEVFRQKIAGVD----- 85

Query: 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK 186
                                   +++ ++A+A  +P+  +S     +      V    K
Sbjct: 86  -----------------------RKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPK 122

Query: 187 ALSEAYRVLKPGGRFLCLEFSHEE 210
            L+EA RVLKPGG  L      E 
Sbjct: 123 VLAEAIRVLKPGGALLEGWDQAEA 146

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 79.5 bits (196), Expect = 3e-18
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 26/106 (24%)

Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE------ 205
           +  L+  AE LP++ +S+    +   I  V   ++AL EAYR+LK GG  +         
Sbjct: 86  VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESF 145

Query: 206 --------------------FSHEEFKSMIESAGFQYVTYENLTFG 231
                               FS EE   ++  AGF+        F 
Sbjct: 146 LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFK 191

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 78.0 bits (192), Expect = 2e-17
 Identities = 34/203 (16%), Positives = 56/203 (27%), Gaps = 57/203 (28%)

Query: 9   FENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYD 68
                  Y               + +           K+L+   G      +L   +   
Sbjct: 3   LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVIL--AKNNP 60

Query: 69  QYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYS 128
                      ++ +                   IDI    L     N E+         
Sbjct: 61  D---------AEITS-------------------IDISPESLEKARENTEKN-------- 84

Query: 129 AYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 188
                 GI+NV             +FL+AN   LP E  S+    + F + ++   ++AL
Sbjct: 85  ------GIKNV-------------KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEAL 125

Query: 189 SEAYRVLKPGGRFLCLEFSHEEF 211
               +VLKPGG    +E  H   
Sbjct: 126 KSLKKVLKPGGTITVIEGDHGSC 148

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 75.8 bits (186), Expect = 1e-16
 Identities = 27/207 (13%), Positives = 54/207 (26%), Gaps = 58/207 (28%)

Query: 12  VAKSYDTMNDAMSFGIHRLWKDI----------FIDRLGPTHDTKLLDVAGGTDPLANLL 61
           + K  D + D M+ G     + I            +        K+L++  G   L+ +L
Sbjct: 2   MEKRLDYITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVL 61

Query: 62  FVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121
                    + QV    G +                     IDI +P             
Sbjct: 62  ---------ADQVGS-SGHVTG-------------------IDIASPDYG---------- 82

Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN 180
                 +  T+     ++      D     + F    +++L PI    +    +A  +  
Sbjct: 83  ------APLTLGQAWNHLLAGPLGDRLT--VHFNTNLSDDLGPIADQHFDRVVLAHSLWY 134

Query: 181 VTRIDKALSEAYRVLKPGGRFLCLEFS 207
               +        +          E+S
Sbjct: 135 FASANALALLFKNMAAVCDHVDVAEWS 161

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 73.4 bits (180), Expect = 6e-16
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 24/105 (22%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-- 206
            P L F++ +   LP E++ + A      +       +AL+E  RVLK  G         
Sbjct: 97  GPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP 156

Query: 207 ----------------------SHEEFKSMIESAGFQYVTYENLT 229
                                    EF+ +++  GF+ V    + 
Sbjct: 157 TAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEE 210
           +   +   ++   I  +S      A    ++      +SE  R+LK  GR + +++  E 
Sbjct: 58  KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 11/62 (17%), Positives = 24/62 (38%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
           +P++ +    AE L +   S         I + + ++K+  E  R+++ G   L      
Sbjct: 75  HPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR 134

Query: 209 EE 210
             
Sbjct: 135 LA 136

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 62.2 bits (151), Expect = 6e-12
 Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 70/226 (30%)

Query: 6   YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLR 65
           ++ +  V  +Y  +N           + + +  +      K+LD+A G    + LL    
Sbjct: 3   FKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKK--RGKVLDLACGVGGFSFLL---- 56

Query: 66  AYDQYSFQVI-----PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120
             + Y F+V+       M                 IR+           + F+  +A +L
Sbjct: 57  --EDYGFEVVGVDISEDM-----------------IRKAREYAKSRESNVEFIVGDARKL 97

Query: 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 180
             E  ++        I +   ++                                     
Sbjct: 98  SFEDKTFDYVIFIDSIVHFEPLEL------------------------------------ 121

Query: 181 VTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYE 226
               ++   E  RVLKP G+F+       E    ++ +      Y 
Sbjct: 122 ----NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYW 163

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 61.9 bits (150), Expect = 8e-12
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 141 RIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200
            +   D+ +   R    +  ++P+E +S         +   T I   L EA RVLKPGG 
Sbjct: 88  PVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGL 146

Query: 201 FLCLE-----FSHEEFKSMIESAGFQYVTYEN 227
               E          F   +   GF+ V+ + 
Sbjct: 147 LKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL 178

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 61.3 bits (148), Expect = 4e-11
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 80/244 (32%)

Query: 16  YDTMNDAMSFGIHRLWKDIF-IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQV 74
              + D     + + +     +   G      +LD+  GT      +++         ++
Sbjct: 55  RKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGT---GRDVYLAS-------KL 104

Query: 75  IPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAF 134
           +   G++I                    +D+ + +L       E           +  + 
Sbjct: 105 VGEHGKVIG-------------------VDMLDNQLEVARKYVEYHA------EKFFGSP 139

Query: 135 GIRNVTRIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKAL 188
              NV             RFL+   E L       +   S             T      
Sbjct: 140 SRSNV-------------RFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALF 186

Query: 189 SEAYRVLKPGGRFLCLE-------------------------FSHEEFKSMIESAGFQYV 223
            E +RVL+ GG     +                            E+F+ ++  AGF+ V
Sbjct: 187 KEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDV 246

Query: 224 TYEN 227
              +
Sbjct: 247 RLVS 250

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
                FLE +A E+ +  D Y        + ++T  +  L +    +K GG+ +C E   
Sbjct: 71  PYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 129

Query: 209 EEFKSMIESAGFQYVTYENL 228
               +     G +   +  L
Sbjct: 130 ISNMASYLLDGEKQSEFIQL 149

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 20/92 (21%)

Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF- 206
           P + F      +L      ++     + + ++   +   AL      ++ GG  L   F 
Sbjct: 84  PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS 143

Query: 207 -----------------SHEEFKSMIESAGFQ 221
                               E    +E+AGFQ
Sbjct: 144 GPSLEPMYHPVATAYRWPLPELAQALETAGFQ 175

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 27/106 (25%)

Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF---- 206
           R+ F  A+A +LP E  S+ A      + ++    +AL E  RVL+PGG     +F    
Sbjct: 112 RVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLA 171

Query: 207 -----------------------SHEEFKSMIESAGFQYVTYENLT 229
                                    +E++S +  A     +  +++
Sbjct: 172 PVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDIS 217

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 150 PRLRFLEANAEELPIESDSY----SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205
           P  R++  +     I    +    SA     G       + AL+  +R L   GR + + 
Sbjct: 89  PEARWVVGDLSVDQISETDFDLIVSAGN-VMGFLAEDGREPALANIHRALGADGRAV-IG 146

Query: 206 FSH------EEFKSMIESAGFQY 222
           F         +F  + E  G + 
Sbjct: 147 FGAGRGWVFGDFLEVAERVGLEL 169

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 38/125 (30%)

Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEF-- 206
                E +     +   S       +   ++T  +K  A+++  ++L  GG+ +  +   
Sbjct: 90  EFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148

Query: 207 -------------------------------SHEEFKSMIESAGFQYVTYENLTFGVVAI 235
                                               +++ E+ GF  VT+  L    V +
Sbjct: 149 ADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH-VTFTRL-NHFVWV 206

Query: 236 HSGFK 240
               K
Sbjct: 207 MEATK 211

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 26/107 (24%)

Query: 149 NPRLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206
           N ++ F   +        +++   Y+  A    ++   +K   + Y+ LKP G  L  ++
Sbjct: 101 NNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160

Query: 207 ------------------------SHEEFKSMIESAGFQYVTYENLT 229
                                   + EE+  ++ +  F+ V  ++L+
Sbjct: 161 CATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLS 207

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 24/101 (23%)

Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF---- 206
           R+  +  + ++LP  ++          I N+   ++ L+E  + LK GG     E     
Sbjct: 97  RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGF-ERGLNEWRKYLKKGGYLAVSECSWFT 155

Query: 207 -------------------SHEEFKSMIESAGFQYVTYENL 228
                              +     + I  AG+  V    L
Sbjct: 156 DERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFIL 196

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 24/102 (23%)

Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF---- 206
           R++ +  + + LP +++          I N+   ++ ++E  + LK GG     E     
Sbjct: 97  RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGF-ERGMNEWSKYLKKGGFIAVSEASWFT 155

Query: 207 -------------------SHEEFKSMIESAGFQYVTYENLT 229
                                      +E AG+    +  L 
Sbjct: 156 SERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILP 197

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 127 YSAYTIAFGIRNVTRID---------KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 177
           +  Y    G + V  ID         K    +P + + +   E++ IE D+Y+    +  
Sbjct: 58  HCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA 117

Query: 178 IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGF 220
           +  +   D    + Y  LK  G F+     H  F +      +
Sbjct: 118 LHYIASFDDICKKVYINLKSSGSFIFSVE-HPVFTADGRQDWY 159

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 149 NPRLRFLEANAEELPIESDS----YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204
           N +L   + +  +LP + +S    YS  TI    +N   + +A+ E  RVLKPGG     
Sbjct: 70  NFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN--DVKEAIDEIKRVLKPGGLACIN 127

Query: 205 EFSHEEFK 212
             + ++ +
Sbjct: 128 FLTTKDER 135

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 127 YSAYTIAFGIRNVTRID---------KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 177
           +  +    G   V  +D         +   P+  + +  A+ ++L +  DS+     +  
Sbjct: 57  FCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA 116

Query: 178 IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGV 232
           +  V  + +     ++ L PGG F+     H  + +      +        T+ +
Sbjct: 117 LHYVEDVARLFRTVHQALSPGGHFVFSTE-HPIYMAPARPG-WAIDAEGRRTWPI 169

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 44/169 (26%)

Query: 101 NQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---------IDKIDI---- 147
           + IDI + R +FL+    E P ++ +  A     GI  +T+         +D +DI    
Sbjct: 56  SSIDINSSR-KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDF 114

Query: 148 -----------PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRV 194
                            +     ++   E DSY    I + I ++T     + L      
Sbjct: 115 LVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS 174

Query: 195 LKPGGRFLCLE-----------------FSHEEFKSMIESAGFQYVTYE 226
           L+P G  +  +                    +  + +I SAG   +  E
Sbjct: 175 LRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 26/104 (25%)

Query: 151 RLRFLEANAEELPIESDSY-SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF--- 206
            +     +  E+P E +SY   ++    + +     K   E  RVLKP G     +    
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFL-HSPDKLKVFQECARVLKPRGVMAITDPMKE 191

Query: 207 ---------------------SHEEFKSMIESAGFQYVTYENLT 229
                                S   ++S+ +  G   +   +  
Sbjct: 192 DGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 45/136 (33%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLE 205
             ++     +A +L    + Y   T            R+ +     ++ LKPGG  +   
Sbjct: 169 AGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227

Query: 206 F-----------------------------------------SHEEFKSMIESAGFQYVT 224
                                                     +H + ++ +E AGF  + 
Sbjct: 228 LTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLR 287

Query: 225 YENLTFGVVAIHSGFK 240
           +E+    +       K
Sbjct: 288 FEDDRARLFPTVIARK 303

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHE 209
           P L F  A+A    ++     A      +  V   + A++  ++ LK GGRF+       
Sbjct: 100 PHLHFDVADARNFRVD-KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158

Query: 210 EFKSMIE 216
             K ++E
Sbjct: 159 NIKYILE 165

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 32/113 (28%)

Query: 146 DIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199
           ++ N +  + +  + E         E   +    +   +  V  I   L   + +L    
Sbjct: 107 NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA 166

Query: 200 RFLCLEFSH--------------------------EEFKSMIESAGFQYVTYE 226
           + L +  S                           ++   M+++ G +Y  Y+
Sbjct: 167 KMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYD 219

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
             ++  +++N  +  I +D++      F     +   +   + Y+ LKPGG F+   F+ 
Sbjct: 75  GVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134

Query: 209 EEFK 212
           E+ +
Sbjct: 135 EQLQ 138

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 207
             + F + +  +   +   + A   A  + +V     +         + PGG    ++ +
Sbjct: 90  DNVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148

Query: 208 HEE 210
             E
Sbjct: 149 DHE 151

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 20/97 (20%)

Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF- 206
           P  +F+ A+ E   +  ++Y    I +    +T  D  K      + L P G     E  
Sbjct: 140 PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199

Query: 207 -----------------SHEEFKSMIESAGFQYVTYE 226
                            S   +K +   +G + V   
Sbjct: 200 STGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 30/106 (28%)

Query: 151 RLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
            +R    N  + P +  +  +++   +    +   +    SE  R LK GGR++ +    
Sbjct: 168 HVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCW 224

Query: 209 -------------------------EEFKSMIESAGFQYVTYENLT 229
                                     E+   +        T  +LT
Sbjct: 225 NPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT 270

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 25/102 (24%)

Query: 135 GIRNVTRID----------KIDIPNPRLRFLEANAEELPIESDSY--------------- 169
           G  NVT +D                P+LR+   +  +L   S S+               
Sbjct: 64  GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAG 123

Query: 170 SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEF 211
                      V  +D+ LSE  RVL PGGRF+ +  +   F
Sbjct: 124 ERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF 165

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 22/99 (22%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
            P++ F  A++  LP    S  A    +             E  RV+KPGG  +      
Sbjct: 129 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP 181

Query: 209 EEFKSMIES---------------AGFQYVTYENLTFGV 232
                +                   GF       L + +
Sbjct: 182 RHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPM 220

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPGGRFL 202
           N  + F   +  EL +  +   A TI       ++    + +    A R+L  GG+ L
Sbjct: 78  NRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 10/81 (12%)

Query: 150 PRLRFLEANA-EELPIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
           P     E N   ELP    + +       G  +       +     +  P   FL +   
Sbjct: 91  PHADVYEWNGKGELPAGLGAPFGLIVSRRGPTS------VILRLPELAAPDAHFLYVGPR 144

Query: 208 H--EEFKSMIESAGFQYVTYE 226
               E    + + G+  V  +
Sbjct: 145 LNVPEVPERLAAVGWDIVAED 165

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 7/77 (9%)

Query: 141 RIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194
             +        + F  +++++        ++       T      +    +K    AY  
Sbjct: 80  IKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYAN 138

Query: 195 LKPGGRFLCLEFSHEEF 211
           L+  G      ++   F
Sbjct: 139 LRKDGTIAIWGYADPIF 155

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 144 KIDIPNPRLRFLEANAEELPIESDSYSAYTI---AFGIRNVTRIDKALSEAYRVLKPGGR 200
           K    N ++ FL+ +  E+  + + + A T+        +   + K  S+    LKPGG 
Sbjct: 82  KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGV 140

Query: 201 FL 202
           F+
Sbjct: 141 FI 142

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 16/79 (20%)

Query: 158 NAEELPIESDSYSAY----TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----- 208
           N ++L   +   S++    +            + L+E  R+L+PGG     E        
Sbjct: 50  NIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN 109

Query: 209 -------EEFKSMIESAGF 220
                   +  S +  +G 
Sbjct: 110 NSKVKTASKLCSALTLSGL 128

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 33/122 (27%)

Query: 90  QYLVESIRQFPNQ----IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI 145
           + + +      N     ID     L  +     + P +           G+ NV      
Sbjct: 37  RNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK----------GGLSNV------ 80

Query: 146 DIPNPRLRFLEANAEELPIE-SDSYSAYTIAF---GIRNVTRIDKA--LSEAYRVLKPGG 199
                   F+ A AE LP E  +   + +I F    +           LS    + K   
Sbjct: 81  -------VFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEA 133

Query: 200 RF 201
            F
Sbjct: 134 HF 135

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK-----------ALSEAYRVLKPGG 199
           R+  ++   + +    D      + F +  +   D            ALS+A  +L  GG
Sbjct: 75  RVTLIKDGHQNMDKYIDCPVK-AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGG 133

Query: 200 RFLCLEFS-HEEFKSMIES 217
               + +   +      E 
Sbjct: 134 IITVVIYYGGDTGFEEKEK 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.83
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.83
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.82
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.82
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.81
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.8
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.79
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.78
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.78
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.78
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.78
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.78
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.77
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.76
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.76
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.76
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.76
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.76
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.75
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.75
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.75
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.75
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.75
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.74
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.74
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.74
3ocj_A	305	Putative exported protein; structural genomics, PS	99.74
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.74
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.74
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.74
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.74
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.74
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.74
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.72
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.72
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.72
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.71
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.71
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.71
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.7
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.7
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.7
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.7
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.69
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.69
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.69
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.68
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.68
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.68
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.68
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.68
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.67
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.67
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.66
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.66
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.66
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.66
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.66
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.66
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.66
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.65
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.65
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.65
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.65
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.64
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.64
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.64
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.64
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.64
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.64
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.63
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.63
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.62
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.62
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.62
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.61
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.61
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.61
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.61
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.61
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.6
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.6
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.6
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.6
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.6
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.59
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.59
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.58
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.57
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.57
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.57
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.56
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.55
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.55
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.55
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.54
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.54
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.53
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.53
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.53
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.52
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.52
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.52
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.51
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.51
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.5
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.5
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.5
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.5
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.49
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.49
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.49
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.49
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.49
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.48
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.47
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.46
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.46
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.46
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.44
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.44
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.44
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.44
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.44
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.44
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.43
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.42
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.42
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.42
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.41
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.41
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.41
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.41
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.41
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.4
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.4
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.39
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.38
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.37
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.37
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.37
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.34
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.34
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.33
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.33
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.32
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.32
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.32
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.32
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.32
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.32
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.31
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.31
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.31
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.31
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.31
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.3
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.29
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.29
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.29
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.29
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.28
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.28
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.28
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.27
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.27
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.27
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.26
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.26
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.26
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.25
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.24
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.23
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.23
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.23
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.23
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.23
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.23
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.23
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.23
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.21
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.21
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.19
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.19
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.18
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.17
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.17
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.16
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.16
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.16
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.16
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.15
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.15
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.15
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.14
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.13
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.11
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.11
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.1
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.1
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.1
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.09
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.09
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.09
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.08
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.07
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.06
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.06
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.06
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.06
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.06
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.05
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.05
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.05
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.05
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.04
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.04
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.04
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.03
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.03
2o07_A	304	Spermidine synthase; structural genomics, structur	99.03
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.02
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.02
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.01
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.01
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.0
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.0
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.99
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.97
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.97
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.97
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.96
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.96
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.93
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.89
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.89
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.88
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.77
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.75
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.75
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.73
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.73
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.72
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.71
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.7
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.69
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.63
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.63
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.63
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.61
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.54
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.5
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.48
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.44
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.39
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.36
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.35
3lkd_A	542	Type I restriction-modification system methyltrans	98.35
3khk_A	544	Type I restriction-modification system methylation	98.34
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.31
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.29
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.24
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.23
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.2
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.19
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.15
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.1
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.08
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.06
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.03
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.97
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.94
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.92
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.88
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.84
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.83
3ufb_A	530	Type I restriction-modification system methyltran	97.8
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.71
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.69
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.67
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.5
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.49
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.46
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.44
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.3
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.21
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.12
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.91
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.32
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.14
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.41
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.96
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	94.71
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	94.21
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.15
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.12
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	93.49
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.54
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	91.99
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	90.82
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	90.62
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.3
2oo3_A	283	Protein involved in catabolism of external DNA; st	90.07
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	88.89
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	88.01
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.83
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	87.17
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	86.25
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.2
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	85.62
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	85.5
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	85.48
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	85.31
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	83.32
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	83.16
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	81.65
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	81.38
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	81.35
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	80.71
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	80.45

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.83  E-value=6.4e-20  Score=154.74  Aligned_cols=176  Identities=18%  Similarity=0.305  Sum_probs=134.1

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      +.+.++|+..+..|+.............+ +.+.+.+. ..++.+|||+|||+|..+             ..++.    .
T Consensus         4 ~~~~~~f~~~a~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~----~   65 (234)
T 3dtn_A            4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFY-GVSVSIASVDTENPDILDLGAGTGLLS-------------AFLME----K   65 (234)
T ss_dssp             CSSCCCCCHHHHHHHHHHHHHCTTHHHHH-HHHHHTCCCSCSSCEEEEETCTTSHHH-------------HHHHH----H
T ss_pred             HHHHHHHHHHHHHHHHhHHHhCcCHHHHH-HHHHHHhhcCCCCCeEEEecCCCCHHH-------------HHHHH----h
Confidence            34567788888888886554444433333 55555555 467789999999999988             44433    1


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                      .             +..+++++|+++.+++.++++..                         ..    +++++.++|+..
T Consensus        66 ~-------------~~~~v~~vD~s~~~~~~a~~~~~-------------------------~~----~~~~~~~~d~~~  103 (234)
T 3dtn_A           66 Y-------------PEATFTLVDMSEKMLEIAKNRFR-------------------------GN----LKVKYIEADYSK  103 (234)
T ss_dssp             C-------------TTCEEEEEESCHHHHHHHHHHTC-------------------------SC----TTEEEEESCTTT
T ss_pred             C-------------CCCeEEEEECCHHHHHHHHHhhc-------------------------cC----CCEEEEeCchhc
Confidence            0             25689999999999999998876                         22    268999999999


Q ss_pred             CCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCcEEEEEecCH-------------------------------
Q psy1420         162 LPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSH-------------------------------  208 (241)
Q Consensus       162 ~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~-------------------------------  208 (241)
                      .+.+ ++||+|++..++++++++.  .++++++++|||||++++.+...                               
T Consensus       104 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (234)
T 3dtn_A          104 YDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAG  182 (234)
T ss_dssp             CCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTT
T ss_pred             cCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence            8876 8999999999999998776  59999999999999999987321                               


Q ss_pred             ------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         209 ------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       209 ------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                                  +++.++++++||+.+++....++. +++.+.|
T Consensus       183 ~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~-~~~~~~~  225 (234)
T 3dtn_A          183 YERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQF-AVMFGRK  225 (234)
T ss_dssp             C----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTE-EEEEEEC
T ss_pred             HHhcccccccCHHHHHHHHHHcCCCceeeeeeecce-eEEEEEe
Confidence                        567789999999999887665553 3445554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.83  E-value=2.7e-20  Score=155.41  Aligned_cols=174  Identities=13%  Similarity=0.186  Sum_probs=115.5

Q ss_pred             CcchHHHHHhhhhhccccchhhhhhhhHH--HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhh
Q psy1420           1 MKLPMYEVFENVAKSYDTMNDAMSFGIHR--LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVM   78 (241)
Q Consensus         1 ~~~~~~~~f~~~~~~yd~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~   78 (241)
                      |.....++|+.++..|+............  .....+++.+...++.+|||+|||+|..+             ..++.  
T Consensus         1 m~~~~~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~--   65 (220)
T 3hnr_A            1 MGTEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLT-------------NKLLL--   65 (220)
T ss_dssp             -----------------------CCTTTTTTTTHHHHHHHHHHTCCSEEEEECCTTSHHH-------------HHHHH--
T ss_pred             CchhHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHH-------------HHHHh--
Confidence            55677889999999999864222211111  11234445555567889999999999988             44444  


Q ss_pred             hhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecc
Q psy1420          79 GQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEAN  158 (241)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  158 (241)
                                       ....++++|+++.+++.++++..                               .++++..+|
T Consensus        66 -----------------~~~~v~~vD~s~~~~~~a~~~~~-------------------------------~~~~~~~~d   97 (220)
T 3hnr_A           66 -----------------AGRTVYGIEPSREMRMIAKEKLP-------------------------------KEFSITEGD   97 (220)
T ss_dssp             -----------------TTCEEEEECSCHHHHHHHHHHSC-------------------------------TTCCEESCC
T ss_pred             -----------------CCCeEEEEeCCHHHHHHHHHhCC-------------------------------CceEEEeCC
Confidence                             35689999999999999987643                               368899999


Q ss_pred             cCCCCCCCCceeEEeeeehhhccccHHH--HHHHHHHhccCCcEEEEEecC-----------------------------
Q psy1420         159 AEELPIESDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFS-----------------------------  207 (241)
Q Consensus       159 ~~~~~~~~~~~D~V~~~~~l~~~~~~~~--~l~~~~~~LkpgG~l~i~~~~-----------------------------  207 (241)
                      +..++.+ ++||+|++..++++++++..  +++++.++|||||++++.+..                             
T Consensus        98 ~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (220)
T 3hnr_A           98 FLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTE  176 (220)
T ss_dssp             SSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred             hhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchh
Confidence            9998877 89999999999999999877  999999999999999998632                             


Q ss_pred             ----HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         208 ----HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       208 ----~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                          .+++.++++++||+++.....  +..-+..+.|
T Consensus       177 ~~~~~~~~~~~l~~aGf~v~~~~~~--~~~w~~~~~~  211 (220)
T 3hnr_A          177 YYTRIPVMQTIFENNGFHVTFTRLN--HFVWVMEATK  211 (220)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEEECS--SSEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHCCCEEEEeecc--ceEEEEeehh
Confidence                178899999999987766643  4555555554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.82  E-value=2.1e-19  Score=156.47  Aligned_cols=144  Identities=17%  Similarity=0.211  Sum_probs=110.4

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|..+             ..++.    .+.           ..+.+++|+|+|+.|++.|++++.  
T Consensus        68 ~~~~~~vLDlGcGtG~~~-------------~~la~----~~~-----------~~~~~v~gvD~s~~ml~~A~~~~~--  117 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAAT-------------LSVRR----NIH-----------HDNCKIIAIDNSPAMIERCRRHID--  117 (261)
T ss_dssp             CCTTCEEEEETCTTTHHH-------------HHHHH----TCC-----------SSSCEEEEEESCHHHHHHHHHHHH--
T ss_pred             CCCCCEEEEEeCCCCHHH-------------HHHHH----hcC-----------CCCCEEEEEECCHHHHHHHHHHHH--
Confidence            367889999999999988             43333    110           135689999999999999999987  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCC
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPG  198 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkpg  198 (241)
                                             ..+.. .+++++++|+.++|.  +++|+|+++++++++++.  ..+|++++++||||
T Consensus       118 -----------------------~~~~~-~~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG  171 (261)
T 4gek_A          118 -----------------------AYKAP-TPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG  171 (261)
T ss_dssp             -----------------------TSCCS-SCEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             -----------------------hhccC-ceEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCC
Confidence                                   44443 479999999999876  459999999999998755  47899999999999


Q ss_pred             cEEEEEecCH--------------------------------------------HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420         199 GRFLCLEFSH--------------------------------------------EEFKSMIESAGFQYVTYENLTFGVVA  234 (241)
Q Consensus       199 G~l~i~~~~~--------------------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~  234 (241)
                      |+|++.+...                                            +++.++|+++||+.+++---.+.. +
T Consensus       172 G~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF-~  250 (261)
T 4gek_A          172 GALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNF-G  250 (261)
T ss_dssp             EEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTE-E
T ss_pred             cEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccE-E
Confidence            9999976321                                            567789999999987753222333 2


Q ss_pred             EEeeecC
Q psy1420         235 IHSGFKL  241 (241)
Q Consensus       235 ~~~~~~~  241 (241)
                      .++|+||
T Consensus       251 ~~iA~K~  257 (261)
T 4gek_A          251 SLVALKA  257 (261)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEc
Confidence            3567775

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.82  E-value=9.5e-20  Score=150.91  Aligned_cols=147  Identities=17%  Similarity=0.240  Sum_probs=120.7

Q ss_pred             HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      ...+.+.+.+.+..+++ +|||+|||+|..+             ..++.                  ....+++++|+++
T Consensus        29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~-------------~~l~~------------------~~~~~v~~~D~s~   76 (219)
T 3dlc_A           29 YPIIAENIINRFGITAG-TCIDIGSGPGALS-------------IALAK------------------QSDFSIRALDFSK   76 (219)
T ss_dssp             HHHHHHHHHHHHCCCEE-EEEEETCTTSHHH-------------HHHHH------------------HSEEEEEEEESCH
T ss_pred             cHHHHHHHHHhcCCCCC-EEEEECCCCCHHH-------------HHHHH------------------cCCCeEEEEECCH
Confidence            34455666777776666 9999999999988             43333                  1245799999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHH
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA  187 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~  187 (241)
                      .+++.+++++.                         ..++. +++++.++|+..++.++++||+|++..++++++++..+
T Consensus        77 ~~~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~  130 (219)
T 3dlc_A           77 HMNEIALKNIA-------------------------DANLN-DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATA  130 (219)
T ss_dssp             HHHHHHHHHHH-------------------------HTTCT-TTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred             HHHHHHHHHHH-------------------------hcccc-CceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHH
Confidence            99999999987                         55544 57999999999998888899999999999999999999


Q ss_pred             HHHHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEEecCce
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLTFGV  232 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~  232 (241)
                      ++++.++|||||++++.+...                                +++.++++++||+.+++.....|.
T Consensus       131 l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~  207 (219)
T 3dlc_A          131 FREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGF  207 (219)
T ss_dssp             HHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEE
T ss_pred             HHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCce
Confidence            999999999999999875221                                788999999999998888665443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=1.5e-19  Score=149.34  Aligned_cols=170  Identities=13%  Similarity=0.131  Sum_probs=129.6

Q ss_pred             cchHHHHHhhhhhccccchhh-hhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420           2 KLPMYEVFENVAKSYDTMNDA-MSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ   80 (241)
Q Consensus         2 ~~~~~~~f~~~~~~yd~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~   80 (241)
                      ++.+.+.|+..+..|+..... ...  ...+...+...+. ..+.+|||+|||+|.++             ..++.    
T Consensus         2 ~~~~~~~y~~~a~~y~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~-------------~~l~~----   61 (203)
T 3h2b_A            2 TDDVSKAYSSPTFDAEALLGTVISA--EDPDRVLIEPWAT-GVDGVILDVGSGTGRWT-------------GHLAS----   61 (203)
T ss_dssp             CCHHHHHHHCTTTCHHHHTCSSCCT--TCTTHHHHHHHHH-HCCSCEEEETCTTCHHH-------------HHHHH----
T ss_pred             HHHHHHHHhhHHHHHHHHhhhhccc--cHHHHHHHHHHhc-cCCCeEEEecCCCCHHH-------------HHHHh----
Confidence            356789999999999664211 111  1112222222222 12679999999999988             44444    


Q ss_pred             hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC
Q psy1420          81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE  160 (241)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  160 (241)
                                     ....++++|+++.+++.++++..                                +++++++|+.
T Consensus        62 ---------------~~~~v~gvD~s~~~~~~a~~~~~--------------------------------~~~~~~~d~~   94 (203)
T 3h2b_A           62 ---------------LGHQIEGLEPATRLVELARQTHP--------------------------------SVTFHHGTIT   94 (203)
T ss_dssp             ---------------TTCCEEEECCCHHHHHHHHHHCT--------------------------------TSEEECCCGG
T ss_pred             ---------------cCCeEEEEeCCHHHHHHHHHhCC--------------------------------CCeEEeCccc
Confidence                           24589999999999999987643                                5789999999


Q ss_pred             CCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCC
Q psy1420         161 ELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGF  220 (241)
Q Consensus       161 ~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf  220 (241)
                      .++.+.++||+|++..++++++  ++..+++++.++|||||++++..+                  +.+++.++++++||
T Consensus        95 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  174 (203)
T 3h2b_A           95 DLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGF  174 (203)
T ss_dssp             GGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTE
T ss_pred             ccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCC
Confidence            9888788999999999999987  889999999999999999998763                  34999999999999


Q ss_pred             ceEEEEEecCceeEEEee
Q psy1420         221 QYVTYENLTFGVVAIHSG  238 (241)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~  238 (241)
                      ++++.........+.+..
T Consensus       175 ~~~~~~~~~~~p~~~l~~  192 (203)
T 3h2b_A          175 QVTSSHWDPRFPHAYLTA  192 (203)
T ss_dssp             EEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEecCCCcchhhhh
Confidence            999999886644444443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.80  E-value=1.9e-18  Score=144.00  Aligned_cols=152  Identities=16%  Similarity=0.213  Sum_probs=124.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++...+                ....++++|+++.+++
T Consensus        26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~vD~s~~~~~   76 (219)
T 3dh0_A           26 PEKVLKEFGLKEGMTVLDVGTGAGFYL-------------PYLSKMVG----------------EKGKVYAIDVQEEMVN   76 (219)
T ss_dssp             HHHHHHHHTCCTTCEEEESSCTTCTTH-------------HHHHHHHT----------------TTCEEEEEESCHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEEecCCCHHH-------------HHHHHHhC----------------CCcEEEEEECCHHHHH
Confidence            355666777788889999999999998             44433110                2468999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .++++..                         ..+++  ++++..+|+...+.+.++||+|++..++++++++..+++++
T Consensus        77 ~a~~~~~-------------------------~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~  129 (219)
T 3dh0_A           77 YAWEKVN-------------------------KLGLK--NVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEEL  129 (219)
T ss_dssp             HHHHHHH-------------------------HHTCT--TEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHH
T ss_pred             HHHHHHH-------------------------HcCCC--cEEEEecccccCCCCCCCeeEEEeehhhhhcCCHHHHHHHH
Confidence            9999887                         44544  68999999999888888999999999999999999999999


Q ss_pred             HHhccCCcEEEEEecC---------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         192 YRVLKPGGRFLCLEFS---------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~---------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      .++|||||++++.++.               .+++.++++++||++++........ ..++++|
T Consensus       130 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~~k  192 (219)
T 3dh0_A          130 KRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYC-FGVYAMI  192 (219)
T ss_dssp             HHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTE-EEEEEEC
T ss_pred             HHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCce-EEEEEEe
Confidence            9999999999998744               3899999999999999988775443 3344444

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.79  E-value=2e-18  Score=148.76  Aligned_cols=143  Identities=24%  Similarity=0.346  Sum_probs=120.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+++.+...++.+|||+|||+|..+             ..++.                  ....+++++|+|+.+
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s~~~   96 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPA-------------VRLAT------------------ARDVRVTGISISRPQ   96 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHH-------------HHHHH------------------HSCCEEEEEESCHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHH-------------HHHHH------------------hcCCEEEEEeCCHHH
Confidence            34566777778788999999999999988             43333                  124689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.+++++.                         ..++. +++++..+|+..+|.++++||+|++..++++++++..+++
T Consensus        97 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~  150 (273)
T 3bus_A           97 VNQANARAT-------------------------AAGLA-NRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALR  150 (273)
T ss_dssp             HHHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHH
T ss_pred             HHHHHHHHH-------------------------hcCCC-cceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHH
Confidence            999998887                         44554 4799999999999888889999999999999999999999


Q ss_pred             HHHHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++.++|||||++++.++.                           .+++.++++++||++++.....
T Consensus       151 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          151 EMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred             HHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECc
Confidence            999999999999987632                           1788999999999999888764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.78  E-value=1.4e-18  Score=146.83  Aligned_cols=162  Identities=19%  Similarity=0.270  Sum_probs=114.7

Q ss_pred             hHHHHHhhhhhccccchhhh-hhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAM-SFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      ...+.|+..+..|+...... .......+.+.+...+.  ++.+|||+|||+|..+             ..++.      
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~-------------~~l~~------   73 (242)
T 3l8d_A           15 SAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVK--KEAEVLDVGCGDGYGT-------------YKLSR------   73 (242)
T ss_dssp             -----------------CHHHHTSTTTTHHHHHHHHSC--TTCEEEEETCTTSHHH-------------HHHHH------
T ss_pred             HHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcC--CCCeEEEEcCCCCHHH-------------HHHHH------
Confidence            45677888888877643221 12222334455555443  6779999999999988             44444      


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++++|+++.+++.++++..                              ..+++++.+|+..+
T Consensus        74 -------------~~~~v~~vD~s~~~~~~a~~~~~------------------------------~~~~~~~~~d~~~~  110 (242)
T 3l8d_A           74 -------------TGYKAVGVDISEVMIQKGKERGE------------------------------GPDLSFIKGDLSSL  110 (242)
T ss_dssp             -------------TTCEEEEEESCHHHHHHHHTTTC------------------------------BTTEEEEECBTTBC
T ss_pred             -------------cCCeEEEEECCHHHHHHHHhhcc------------------------------cCCceEEEcchhcC
Confidence                         34579999999999999886643                              13689999999999


Q ss_pred             CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC------------------------HHHHHHHHHHC
Q psy1420         163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS------------------------HEEFKSMIESA  218 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~------------------------~~~~~~~l~~~  218 (241)
                      +.+.++||+|++..++++++++..++++++++|+|||++++.+..                        ..++.++++++
T Consensus       111 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  190 (242)
T 3l8d_A          111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQ  190 (242)
T ss_dssp             SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHT
T ss_pred             CCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHc
Confidence            888889999999999999999999999999999999999998732                        27899999999


Q ss_pred             CCceEEEEEec
Q psy1420         219 GFQYVTYENLT  229 (241)
Q Consensus       219 Gf~~~~~~~~~  229 (241)
                      ||++++.....
T Consensus       191 Gf~~~~~~~~~  201 (242)
T 3l8d_A          191 GFKVVDGIGVY  201 (242)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CCEEEEeeccc
Confidence            99999887653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.78  E-value=1.6e-18  Score=148.68  Aligned_cols=139  Identities=23%  Similarity=0.367  Sum_probs=116.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|.++             ..+..                   ...+++++|+|+.+++
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~l~   73 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVA-------------NAFAP-------------------FVKKVVAFDLTEDILK   73 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHH-------------HHHGG-------------------GSSEEEEEESCHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHH-------------HHHHH-------------------hCCEEEEEeCCHHHHH
Confidence            355666667778889999999999988             44444                   2358999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .+++++.                         ..+.+  ++.+..+|+..+|+++++||+|++..++++++++..+++++
T Consensus        74 ~a~~~~~-------------------------~~~~~--~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~  126 (260)
T 1vl5_A           74 VARAFIE-------------------------GNGHQ--QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEA  126 (260)
T ss_dssp             HHHHHHH-------------------------HTTCC--SEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred             HHHHHHH-------------------------hcCCC--ceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHH
Confidence            9998876                         44443  68999999999988888999999999999999999999999


Q ss_pred             HHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         192 YRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      .++|||||++++.+..                           .+++.++++++||.++......
T Consensus       127 ~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  191 (260)
T 1vl5_A          127 YRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFH  191 (260)
T ss_dssp             HHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred             HHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence            9999999999986421                           1788999999999998887664

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.78  E-value=2.5e-18  Score=149.58  Aligned_cols=165  Identities=16%  Similarity=0.249  Sum_probs=122.0

Q ss_pred             HHHHHhhhhhccccchhhhh-hhhH-HH---HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhh
Q psy1420           5 MYEVFENVAKSYDTMNDAMS-FGIH-RL---WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMG   79 (241)
Q Consensus         5 ~~~~f~~~~~~yd~~~~~~~-~~~~-~~---~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~   79 (241)
                      ..+.|+.++..|+....... .... ..   ....++..+... +.+|||+|||+|.++             ..++.   
T Consensus        26 ~~~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vLDiGcG~G~~~-------------~~l~~---   88 (285)
T 4htf_A           26 QDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ-KLRVLDAGGGEGQTA-------------IKMAE---   88 (285)
T ss_dssp             ------CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSS-CCEEEEETCTTCHHH-------------HHHHH---
T ss_pred             cccchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCC-CCEEEEeCCcchHHH-------------HHHHH---
Confidence            34578888888875311111 1111 11   123344444443 679999999999988             44444   


Q ss_pred             hhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc
Q psy1420          80 QLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA  159 (241)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  159 (241)
                                      ....++++|+++.+++.+++++.                         ..++. ++++++.+|+
T Consensus        89 ----------------~~~~v~gvD~s~~~~~~a~~~~~-------------------------~~~~~-~~v~~~~~d~  126 (285)
T 4htf_A           89 ----------------RGHQVILCDLSAQMIDRAKQAAE-------------------------AKGVS-DNMQFIHCAA  126 (285)
T ss_dssp             ----------------TTCEEEEEESCHHHHHHHHHHHH-------------------------C-CCG-GGEEEEESCG
T ss_pred             ----------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hcCCC-cceEEEEcCH
Confidence                            34689999999999999999987                         55553 4789999999


Q ss_pred             CCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH------------------------------
Q psy1420         160 EELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH------------------------------  208 (241)
Q Consensus       160 ~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------------------  208 (241)
                      ..++ ..+++||+|++..++++++++..+++++.++|||||++++.....                              
T Consensus       127 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (285)
T 4htf_A          127 QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSP  206 (285)
T ss_dssp             GGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCC
T ss_pred             HHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCC
Confidence            9887 667899999999999999999999999999999999999876422                              


Q ss_pred             ------HHHHHHHHHCCCceEEEEEe
Q psy1420         209 ------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       209 ------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                            +++.++++++||++++...+
T Consensus       207 ~~~~~~~~l~~~l~~aGf~v~~~~~~  232 (285)
T 4htf_A          207 DYPRDPTQVYLWLEEAGWQIMGKTGV  232 (285)
T ss_dssp             SCCBCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHCCCceeeeeeE
Confidence                  78999999999999988866

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.78  E-value=2.7e-18  Score=146.52  Aligned_cols=137  Identities=16%  Similarity=0.197  Sum_probs=114.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+.+.+...++.+|||+|||+|..+             ..++.                  .....++++|+++.+++
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~   81 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHC-------------IYAAE------------------HGAKKVLGIDLSERMLT   81 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHHHH
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHH-------------HHHHH------------------cCCCEEEEEECCHHHHH
Confidence            445667777778889999999999988             44433                  11237999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .++++..                              ..++++..+|+..++.+.++||+|++..++++++++..+++++
T Consensus        82 ~a~~~~~------------------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~  131 (253)
T 3g5l_A           82 EAKRKTT------------------------------SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKV  131 (253)
T ss_dssp             HHHHHCC------------------------------CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred             HHHHhhc------------------------------cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHHHHHH
Confidence            9987753                              1468999999999888788999999999999999999999999


Q ss_pred             HHhccCCcEEEEEec------------------------------------------------CHHHHHHHHHHCCCceE
Q psy1420         192 YRVLKPGGRFLCLEF------------------------------------------------SHEEFKSMIESAGFQYV  223 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~------------------------------------------------~~~~~~~~l~~~Gf~~~  223 (241)
                      +++|||||++++...                                                +.+++.++++++||+++
T Consensus       132 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~  211 (253)
T 3g5l_A          132 YINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQIN  211 (253)
T ss_dssp             HHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEE
T ss_pred             HHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeee
Confidence            999999999998632                                                45889999999999999


Q ss_pred             EEEEec
Q psy1420         224 TYENLT  229 (241)
Q Consensus       224 ~~~~~~  229 (241)
                      ++....
T Consensus       212 ~~~e~~  217 (253)
T 3g5l_A          212 SVIEPE  217 (253)
T ss_dssp             EEECCC
T ss_pred             eeecCC
Confidence            888653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.78  E-value=3.7e-18  Score=141.63  Aligned_cols=164  Identities=13%  Similarity=0.125  Sum_probs=123.9

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      +...++|+..+..|+..   ...... .....+.+.+. ..++.+|||+|||+|..+             ..++.     
T Consensus         9 ~~~~~~~~~~a~~y~~~---~~~~~~-~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~-------------~~l~~-----   66 (218)
T 3ou2_A            9 ESQLSYYRARASEYDAT---FVPYMD-SAAPAALERLRAGNIRGDVLELASGTGYWT-------------RHLSG-----   66 (218)
T ss_dssp             HHHHHHHHHHGGGHHHH---HHHHHT-TTHHHHHHHHTTTTSCSEEEEESCTTSHHH-------------HHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHh---hhhHHH-HHHHHHHHHHhcCCCCCeEEEECCCCCHHH-------------HHHHh-----
Confidence            45677888888888772   111111 12333444443 467779999999999988             44444     


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                                    ...+++++|+++.+++.+++  .                           +.  .++++.++|+..
T Consensus        67 --------------~~~~v~~~D~s~~~~~~a~~--~---------------------------~~--~~~~~~~~d~~~  101 (218)
T 3ou2_A           67 --------------LADRVTALDGSAEMIAEAGR--H---------------------------GL--DNVEFRQQDLFD  101 (218)
T ss_dssp             --------------HSSEEEEEESCHHHHHHHGG--G---------------------------CC--TTEEEEECCTTS
T ss_pred             --------------cCCeEEEEeCCHHHHHHHHh--c---------------------------CC--CCeEEEeccccc
Confidence                          24589999999999999876  2                           11  368999999988


Q ss_pred             CCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcEEEEEec---------------------------------
Q psy1420         162 LPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF---------------------------------  206 (241)
Q Consensus       162 ~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~---------------------------------  206 (241)
                      . .+.++||+|+++.++++++++  ..+++++.++|||||.+++.+.                                 
T Consensus       102 ~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (218)
T 3ou2_A          102 W-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVK  180 (218)
T ss_dssp             C-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEEC
T ss_pred             C-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhh
Confidence            7 567899999999999999886  8999999999999999998754                                 


Q ss_pred             ---CHHHHHHHHHHCCCceEEEEEecCceeE
Q psy1420         207 ---SHEEFKSMIESAGFQYVTYENLTFGVVA  234 (241)
Q Consensus       207 ---~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  234 (241)
                         +.+++.++++++||++...+...+....
T Consensus       181 ~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~  211 (218)
T 3ou2_A          181 VFRSPAELTERLTALGWSCSVDEVHPGFLYA  211 (218)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEEEETTEEEE
T ss_pred             cCCCHHHHHHHHHHCCCEEEeeeccccceEe
Confidence               3378999999999997766665544443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.78  E-value=4.2e-18  Score=143.54  Aligned_cols=171  Identities=17%  Similarity=0.200  Sum_probs=127.3

Q ss_pred             HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420           8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ   85 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (241)
                      .|+.++..|+.....  ......+.+.+.+.+..  .++.+|||+|||+|..+             ..++.         
T Consensus         2 ~y~~~a~~yd~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~-------------~~l~~---------   57 (246)
T 1y8c_A            2 CYNKFAHIYDKLIRA--DVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLT-------------ENLCP---------   57 (246)
T ss_dssp             CHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTH-------------HHHGG---------
T ss_pred             hHHHHHHHHHHHccc--cccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHH-------------HHHHH---------
Confidence            467777778765331  11122334444444433  36779999999999998             44444         


Q ss_pred             CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420          86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE  165 (241)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (241)
                                ...+++++|+++.+++.++++..                         ..+.   ++++.++|+...+.+
T Consensus        58 ----------~~~~~~~~D~s~~~~~~a~~~~~-------------------------~~~~---~~~~~~~d~~~~~~~   99 (246)
T 1y8c_A           58 ----------KFKNTWAVDLSQEMLSEAENKFR-------------------------SQGL---KPRLACQDISNLNIN   99 (246)
T ss_dssp             ----------GSSEEEEECSCHHHHHHHHHHHH-------------------------HTTC---CCEEECCCGGGCCCS
T ss_pred             ----------CCCcEEEEECCHHHHHHHHHHHh-------------------------hcCC---CeEEEecccccCCcc
Confidence                      34579999999999999998876                         3332   478899999888766


Q ss_pred             CCceeEEeeee-hhhcc---ccHHHHHHHHHHhccCCcEEEEEe------------------------------------
Q psy1420         166 SDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE------------------------------------  205 (241)
Q Consensus       166 ~~~~D~V~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~------------------------------------  205 (241)
                       ++||+|++.. +++++   +++..+++++.++|||||++++..                                    
T Consensus       100 -~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (246)
T 1y8c_A          100 -RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVS  178 (246)
T ss_dssp             -CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEE
T ss_pred             -CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEE
Confidence             7899999998 99998   678899999999999999998721                                    


Q ss_pred             ------------------------cCHHHHHHHHHHCCCceEEEEEec-------CceeEEEeeecC
Q psy1420         206 ------------------------FSHEEFKSMIESAGFQYVTYENLT-------FGVVAIHSGFKL  241 (241)
Q Consensus       206 ------------------------~~~~~~~~~l~~~Gf~~~~~~~~~-------~~~~~~~~~~~~  241 (241)
                                              ++.+++.++++++||+++++....       .....+++++||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~  245 (246)
T 1y8c_A          179 MYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG  245 (246)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred             EEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence                                    145899999999999999886542       223457778876

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.77  E-value=6.4e-18  Score=142.31  Aligned_cols=156  Identities=11%  Similarity=0.113  Sum_probs=108.6

Q ss_pred             HHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420           5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG   84 (241)
Q Consensus         5 ~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (241)
                      ..++|+..+..|+....  .....+...+.+...   .++.+|||+|||+|.++             ..+..        
T Consensus         9 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~---~~~~~vLDiGcG~G~~~-------------~~l~~--------   62 (250)
T 2p7i_A            9 DQEIKDTAGHKYAYNFD--FDVMHPFMVRAFTPF---FRPGNLLELGSFKGDFT-------------SRLQE--------   62 (250)
T ss_dssp             --------------CHH--HHTHHHHHHHHHGGG---CCSSCEEEESCTTSHHH-------------HHHTT--------
T ss_pred             CHHHHhhHHHHhcCccc--hhhHHHHHHHHHHhh---cCCCcEEEECCCCCHHH-------------HHHHH--------
Confidence            35677877777755211  111112222222222   45678999999999988             44443        


Q ss_pred             CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420          85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI  164 (241)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  164 (241)
                                 ....++++|+++.+++.++++..                               .++++.++|+..+ .
T Consensus        63 -----------~~~~v~gvD~s~~~~~~a~~~~~-------------------------------~~v~~~~~d~~~~-~   99 (250)
T 2p7i_A           63 -----------HFNDITCVEASEEAISHAQGRLK-------------------------------DGITYIHSRFEDA-Q   99 (250)
T ss_dssp             -----------TCSCEEEEESCHHHHHHHHHHSC-------------------------------SCEEEEESCGGGC-C
T ss_pred             -----------hCCcEEEEeCCHHHHHHHHHhhh-------------------------------CCeEEEEccHHHc-C
Confidence                       24579999999999999988765                               1588999998887 3


Q ss_pred             CCCceeEEeeeehhhccccHHHHHHHHH-HhccCCcEEEEEec-----------------------------------CH
Q psy1420         165 ESDSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRFLCLEF-----------------------------------SH  208 (241)
Q Consensus       165 ~~~~~D~V~~~~~l~~~~~~~~~l~~~~-~~LkpgG~l~i~~~-----------------------------------~~  208 (241)
                      ++++||+|++..++++++++..+++++. ++|||||++++.+.                                   +.
T Consensus       100 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (250)
T 2p7i_A          100 LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYAL  179 (250)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCH
T ss_pred             cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCH
Confidence            5678999999999999999999999999 99999999999762                                   22


Q ss_pred             HHHHHHHHHCCCceEEEEEec
Q psy1420         209 EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       209 ~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++.++++++||++++.....
T Consensus       180 ~~~~~~l~~~Gf~~~~~~~~~  200 (250)
T 2p7i_A          180 DTLERDASRAGLQVTYRSGIF  200 (250)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEE
T ss_pred             HHHHHHHHHCCCeEEEEeeeE
Confidence            789999999999999887543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.76  E-value=6.4e-18  Score=142.59  Aligned_cols=160  Identities=13%  Similarity=0.178  Sum_probs=114.0

Q ss_pred             HHHhh--hhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420           7 EVFEN--VAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG   84 (241)
Q Consensus         7 ~~f~~--~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (241)
                      +.|+.  ++..|+...............+.+.+.+...++.+|||+|||+|..+             ..++.        
T Consensus         5 ~~y~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~--------   63 (243)
T 3bkw_A            5 NIYDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFC-------------RWAHE--------   63 (243)
T ss_dssp             --------------------CGGGCTTHHHHHHHSCCCTTCEEEEETCTTCHHH-------------HHHHH--------
T ss_pred             hhhcCHHHHHHHHHhccCCccHHHHHhHHHHHHhccccCCCEEEEEcCcCCHHH-------------HHHHH--------
Confidence            45566  77778776433321111122345667777778889999999999988             44433        


Q ss_pred             CCCcchhhhcccCC-CceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC
Q psy1420          85 QWKPYQYLVESIRQ-FPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP  163 (241)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  163 (241)
                                 ... .++++|+++.+++.++++..                         .     .++++..+|+...+
T Consensus        64 -----------~~~~~v~~vD~s~~~~~~a~~~~~-------------------------~-----~~~~~~~~d~~~~~  102 (243)
T 3bkw_A           64 -----------HGASYVLGLDLSEKMLARARAAGP-------------------------D-----TGITYERADLDKLH  102 (243)
T ss_dssp             -----------TTCSEEEEEESCHHHHHHHHHTSC-------------------------S-----SSEEEEECCGGGCC
T ss_pred             -----------CCCCeEEEEcCCHHHHHHHHHhcc-------------------------c-----CCceEEEcChhhcc
Confidence                       223 79999999999999987754                         1     25889999999888


Q ss_pred             CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec-------------------------------------
Q psy1420         164 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-------------------------------------  206 (241)
Q Consensus       164 ~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~-------------------------------------  206 (241)
                      .+.++||+|++..++++++++..+++++.++|||||++++...                                     
T Consensus       103 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (243)
T 3bkw_A          103 LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDW  182 (243)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTH
T ss_pred             CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeee
Confidence            7778999999999999999999999999999999999998641                                     


Q ss_pred             ----------CHHHHHHHHHHCCCceEEEEEe
Q psy1420         207 ----------SHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       207 ----------~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                                +.+++.++++++||+++++...
T Consensus       183 ~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          183 LAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             HHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             ccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence                      3488999999999999988765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.76  E-value=8.1e-18  Score=143.06  Aligned_cols=139  Identities=23%  Similarity=0.389  Sum_probs=117.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ..-+.+.+..+++.+|||+|||+|..+             ..++.                   ....++++|+++.+++
T Consensus        10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~   57 (239)
T 1xxl_A           10 LGLMIKTAECRAEHRVLDIGAGAGHTA-------------LAFSP-------------------YVQECIGVDATKEMVE   57 (239)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHHHH
T ss_pred             cchHHHHhCcCCCCEEEEEccCcCHHH-------------HHHHH-------------------hCCEEEEEECCHHHHH
Confidence            345667777889999999999999988             44444                   3457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .+++++.                         ..+++  ++.+..+|+..+++++++||+|++..++++++++..+++++
T Consensus        58 ~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~  110 (239)
T 1xxl_A           58 VASSFAQ-------------------------EKGVE--NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV  110 (239)
T ss_dssp             HHHHHHH-------------------------HHTCC--SEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred             HHHHHHH-------------------------HcCCC--CeEEEecccccCCCCCCcEEEEEECCchhhccCHHHHHHHH
Confidence            9998876                         44443  68999999999888888999999999999999999999999


Q ss_pred             HHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         192 YRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      .++|||||++++.+..                           .+++.++++++||.+++...+.
T Consensus       111 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~  175 (239)
T 1xxl_A          111 ARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  175 (239)
T ss_dssp             HHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEeec
Confidence            9999999999987532                           1789999999999988887663

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.76  E-value=2.8e-18  Score=142.77  Aligned_cols=172  Identities=12%  Similarity=0.125  Sum_probs=125.7

Q ss_pred             hHHHHHhhhhhccccchhhhhhhh-HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAMSFGI-HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      .+.+.|+..+..|+.......... .......+++.+...++.+|||+|||+|.++             ..++.      
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~------   72 (227)
T 3e8s_A           12 ALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLL-------------RALAD------   72 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHH-------------HHHHT------
T ss_pred             HHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHH-------------HHHHH------
Confidence            566788888877776321111111 1123344555555566789999999999988             44444      


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ...+++++|+++.+++.++++ .                                ++.+...++..+
T Consensus        73 -------------~~~~v~~vD~s~~~~~~a~~~-~--------------------------------~~~~~~~~~~~~  106 (227)
T 3e8s_A           73 -------------RGIEAVGVDGDRTLVDAARAA-G--------------------------------AGEVHLASYAQL  106 (227)
T ss_dssp             -------------TTCEEEEEESCHHHHHHHHHT-C--------------------------------SSCEEECCHHHH
T ss_pred             -------------CCCEEEEEcCCHHHHHHHHHh-c--------------------------------ccccchhhHHhh
Confidence                         245799999999999998865 2                                355667776655


Q ss_pred             ---CCC-CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec--------------------------------
Q psy1420         163 ---PIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF--------------------------------  206 (241)
Q Consensus       163 ---~~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~--------------------------------  206 (241)
                         +.. ..+||+|++..+++ ..++..+++++.++|||||++++.+.                                
T Consensus       107 ~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (227)
T 3e8s_A          107 AEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWY  185 (227)
T ss_dssp             HTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEE
T ss_pred             cccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEE
Confidence               433 34599999999999 88999999999999999999999764                                


Q ss_pred             --CHHHHHHHHHHCCCceEEEEEecC-----ceeEEEeeecC
Q psy1420         207 --SHEEFKSMIESAGFQYVTYENLTF-----GVVAIHSGFKL  241 (241)
Q Consensus       207 --~~~~~~~~l~~~Gf~~~~~~~~~~-----~~~~~~~~~~~  241 (241)
                        +.+++.++++++||+++++.....     ....+++++||
T Consensus       186 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          186 FRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             ECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred             EecHHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence              348999999999999999886432     23556677775

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.76  E-value=9.7e-18  Score=144.50  Aligned_cols=140  Identities=18%  Similarity=0.202  Sum_probs=117.0

Q ss_pred             HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ...++..+. ..++.+|||+|||+|..+             ..++.                  .....++++|+++.++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~   82 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTGGQT-------------MVLAG------------------HVTGQVTGLDFLSGFI   82 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTCHHH-------------HHHHT------------------TCSSEEEEEESCHHHH
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCCHHH-------------HHHHh------------------ccCCEEEEEeCCHHHH
Confidence            344555555 577889999999999988             44443                  1245899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         ..+++ +++++..+|+..++.+.++||+|++..+++++ ++..++++
T Consensus        83 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~  135 (267)
T 3kkz_A           83 DIFNRNAR-------------------------QSGLQ-NRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNE  135 (267)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHH
T ss_pred             HHHHHHHH-------------------------HcCCC-cCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHH
Confidence            99999987                         55655 57999999999988878899999999999999 89999999


Q ss_pred             HHHhccCCcEEEEEecC-----------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEFS-----------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~-----------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +.++|||||++++.+..                       .+++.++++++||++++...+.
T Consensus       136 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          136 WRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILP  197 (267)
T ss_dssp             HGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred             HHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence            99999999999997642                       1788999999999999888764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.76  E-value=7.1e-18  Score=147.34  Aligned_cols=142  Identities=16%  Similarity=0.134  Sum_probs=118.9

Q ss_pred             HHHHHHhhc----CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCC
Q psy1420          31 WKDIFIDRL----GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIP  106 (241)
Q Consensus        31 ~~~~~~~~l----~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s  106 (241)
                      ..+.+++.+    ...++.+|||+|||+|..+             ..++.                  ....+++++|++
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s  114 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAA-------------RFLVR------------------KFGVSIDCLNIA  114 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESC
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHH-------------HHHHH------------------HhCCEEEEEeCC
Confidence            345566666    6678889999999999988             44443                  113579999999


Q ss_pred             hHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHH
Q psy1420         107 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK  186 (241)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~  186 (241)
                      +.+++.++++..                         ..++. +++++..+|+..+|+++++||+|++..++++++++..
T Consensus       115 ~~~~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~  168 (297)
T 2o57_A          115 PVQNKRNEEYNN-------------------------QAGLA-DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK  168 (297)
T ss_dssp             HHHHHHHHHHHH-------------------------HHTCT-TTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH
T ss_pred             HHHHHHHHHHHH-------------------------hcCCC-cceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHH
Confidence            999999998876                         45554 5799999999999988889999999999999999999


Q ss_pred             HHHHHHHhccCCcEEEEEecC------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFS------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++++.++|||||++++.+..                        .+++.++++++||++++...++
T Consensus       169 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          169 VFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             HHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence            999999999999999987632                        2778899999999999888764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.75  E-value=7.2e-18  Score=140.11  Aligned_cols=153  Identities=18%  Similarity=0.161  Sum_probs=121.1

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      +...++|+..+..|+.....      ......++..+  .++.+|||+|||+|.++             ..++.      
T Consensus        11 ~~~~~~~~~~~~~y~~~~~~------~~~~~~~~~~~--~~~~~vLDiGcG~G~~~-------------~~l~~------   63 (211)
T 3e23_A           11 DDTLRFYRGNATAYAERQPR------SATLTKFLGEL--PAGAKILELGCGAGYQA-------------EAMLA------   63 (211)
T ss_dssp             HHHHHHHHHSHHHHTTCCCC------CHHHHHHHTTS--CTTCEEEESSCTTSHHH-------------HHHHH------
T ss_pred             HHHHHHHHHHHHHHhhccch------hHHHHHHHHhc--CCCCcEEEECCCCCHHH-------------HHHHH------
Confidence            45678899888888875332      12223333333  46779999999999988             44444      


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++++|+++.+++.++++..                                 +.+..+|+..+
T Consensus        64 -------------~~~~v~~vD~s~~~~~~a~~~~~---------------------------------~~~~~~d~~~~   97 (211)
T 3e23_A           64 -------------AGFDVDATDGSPELAAEASRRLG---------------------------------RPVRTMLFHQL   97 (211)
T ss_dssp             -------------TTCEEEEEESCHHHHHHHHHHHT---------------------------------SCCEECCGGGC
T ss_pred             -------------cCCeEEEECCCHHHHHHHHHhcC---------------------------------CceEEeeeccC
Confidence                         34579999999999999987754                                 55678888888


Q ss_pred             CCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEec-----------------CHHHHHHHHHHCC-Cce
Q psy1420         163 PIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF-----------------SHEEFKSMIESAG-FQY  222 (241)
Q Consensus       163 ~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~-----------------~~~~~~~~l~~~G-f~~  222 (241)
                      + +.++||+|++..++++++  ++..+++++.++|||||++++...                 +.+++.++++++| |++
T Consensus        98 ~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~  176 (211)
T 3e23_A           98 D-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWAS  176 (211)
T ss_dssp             C-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred             C-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEE
Confidence            7 678999999999999998  788999999999999999998743                 3489999999999 999


Q ss_pred             EEEEEec
Q psy1420         223 VTYENLT  229 (241)
Q Consensus       223 ~~~~~~~  229 (241)
                      +++....
T Consensus       177 ~~~~~~~  183 (211)
T 3e23_A          177 VAVESSE  183 (211)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecc
Confidence            9888664

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.75  E-value=2.1e-18  Score=148.63  Aligned_cols=150  Identities=15%  Similarity=0.278  Sum_probs=114.9

Q ss_pred             HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420           8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK   87 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (241)
                      .|+.++..|+.....     ...+.+.+.+.+...++.+|||+|||+|.++             ..+..           
T Consensus         4 ~y~~~a~~y~~~~~~-----~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-----------   54 (261)
T 3ege_A            4 IYNSIGKQYSQTRVP-----DIRIVNAIINLLNLPKGSVIADIGAGTGGYS-------------VALAN-----------   54 (261)
T ss_dssp             ---------CCSBCC-----CHHHHHHHHHHHCCCTTCEEEEETCTTSHHH-------------HHHHT-----------
T ss_pred             HHHHHHHHHhhcccc-----cHHHHHHHHHHhCCCCCCEEEEEcCcccHHH-------------HHHHh-----------
Confidence            688899999875322     2245666777777778889999999999988             44443           


Q ss_pred             cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420          88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD  167 (241)
Q Consensus        88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (241)
                              ...+++++|+|+.+++.++++                                 .++++...|+..++++++
T Consensus        55 --------~~~~v~gvD~s~~~~~~a~~~---------------------------------~~~~~~~~d~~~~~~~~~   93 (261)
T 3ege_A           55 --------QGLFVYAVEPSIVMRQQAVVH---------------------------------PQVEWFTGYAENLALPDK   93 (261)
T ss_dssp             --------TTCEEEEECSCHHHHHSSCCC---------------------------------TTEEEECCCTTSCCSCTT
T ss_pred             --------CCCEEEEEeCCHHHHHHHHhc---------------------------------cCCEEEECchhhCCCCCC
Confidence                    356899999999888765422                                 158899999999888888


Q ss_pred             ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------------------------HHHHHHHHHCCCc
Q psy1420         168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------EEFKSMIESAGFQ  221 (241)
Q Consensus       168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------~~~~~~l~~~Gf~  221 (241)
                      +||+|++..++++++++..++++++++|| ||++++.++..                          +.+. +++++||.
T Consensus        94 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~  171 (261)
T 3ege_A           94 SVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKR  171 (261)
T ss_dssp             CBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCS
T ss_pred             CEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCC
Confidence            99999999999999999999999999999 99988887653                          5677 99999999


Q ss_pred             eEEEEEec
Q psy1420         222 YVTYENLT  229 (241)
Q Consensus       222 ~~~~~~~~  229 (241)
                      .++.....
T Consensus       172 ~v~~~~~~  179 (261)
T 3ege_A          172 RVEAIPFL  179 (261)
T ss_dssp             EEEEEECC
T ss_pred             ceeEEEec
Confidence            98887763

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.75  E-value=1.8e-17  Score=146.54  Aligned_cols=140  Identities=19%  Similarity=0.251  Sum_probs=117.8

Q ss_pred             HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      .+.+++.+. ..++.+|||+|||+|..+             ..++.                  ....+++++|+++.++
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~  153 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSM-------------VMAHR------------------RFGSRVEGVTLSAAQA  153 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHH
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHH-------------HHHHH------------------HcCCEEEEEeCCHHHH
Confidence            345667776 678889999999999988             44443                  1145799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         ..++. +++++..+|+..++++.++||+|++..+++++ ++..++++
T Consensus       154 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~  206 (312)
T 3vc1_A          154 DFGNRRAR-------------------------ELRID-DHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSE  206 (312)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHH
T ss_pred             HHHHHHHH-------------------------HcCCC-CceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHH
Confidence            99999987                         55555 57999999999998888899999999999999 59999999


Q ss_pred             HHHhccCCcEEEEEecC-------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEFS-------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~-------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +.++|||||++++.+..                         .+++.++++++||++++.+.+.
T Consensus       207 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          207 HSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             HHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred             HHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence            99999999999987621                         2788999999999999988764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.75  E-value=8.9e-18  Score=144.25  Aligned_cols=133  Identities=17%  Similarity=0.225  Sum_probs=109.0

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.++++..    
T Consensus        50 ~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~~a~~~~~----   93 (263)
T 3pfg_A           50 KAASLLDVACGTGMHL-------------RHLAD-------------------SFGTVEGLELSADMLAIARRRNP----   93 (263)
T ss_dssp             TCCEEEEETCTTSHHH-------------HHHTT-------------------TSSEEEEEESCHHHHHHHHHHCT----
T ss_pred             CCCcEEEeCCcCCHHH-------------HHHHH-------------------cCCeEEEEECCHHHHHHHHhhCC----
Confidence            5679999999999988             44444                   34579999999999999987754    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee-hhhccc---cHHHHHHHHHHhccCC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNVT---RIDKALSEAYRVLKPG  198 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~-~l~~~~---~~~~~l~~~~~~Lkpg  198 (241)
                                                  +++++++|+..++. .++||+|++.. ++++++   +...+++++.++||||
T Consensus        94 ----------------------------~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg  144 (263)
T 3pfg_A           94 ----------------------------DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD  144 (263)
T ss_dssp             ----------------------------TSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred             ----------------------------CCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence                                        57899999998877 67899999998 999885   5668899999999999


Q ss_pred             cEEEEEe---------------------------------------------------------------cCHHHHHHHH
Q psy1420         199 GRFLCLE---------------------------------------------------------------FSHEEFKSMI  215 (241)
Q Consensus       199 G~l~i~~---------------------------------------------------------------~~~~~~~~~l  215 (241)
                      |++++..                                                               ++.+++.++|
T Consensus       145 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll  224 (263)
T 3pfg_A          145 GVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAF  224 (263)
T ss_dssp             EEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHH
T ss_pred             cEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHH
Confidence            9999841                                                               1348999999


Q ss_pred             HHCCCceEEEEEecCceeEEEeeecC
Q psy1420         216 ESAGFQYVTYENLTFGVVAIHSGFKL  241 (241)
Q Consensus       216 ~~~Gf~~~~~~~~~~~~~~~~~~~~~  241 (241)
                      +++||+++++... .+...+++++||
T Consensus       225 ~~aGF~v~~~~~~-~~~~~~~va~K~  249 (263)
T 3pfg_A          225 TAAGLSVEFMPGG-PSGRGLFTGLPG  249 (263)
T ss_dssp             HHTTEEEEEESST-TTSSCEEEEEEC
T ss_pred             HHCCCEEEEeeCC-CCCceeEEEecC
Confidence            9999998887544 455667888886

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.75  E-value=2.4e-17  Score=140.61  Aligned_cols=162  Identities=19%  Similarity=0.244  Sum_probs=122.1

Q ss_pred             HHHHhhhhhccccchhhhhhhhHHHHHHHHHh-hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420           6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFID-RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG   84 (241)
Q Consensus         6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (241)
                      ...|+..+..|+..... .......+.+.+.. .....++.+|||+|||+|..+             ..++.        
T Consensus         2 ~~~~~~~a~~y~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~--------   59 (263)
T 2yqz_A            2 SSALLRAAYAYDRLRAH-PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA-------------LPLIA--------   59 (263)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTH-------------HHHHT--------
T ss_pred             CCchHHHHHHHhhhccc-ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHH-------------HHHHH--------
Confidence            45688888888875322 22223333344433 224467889999999999998             44444        


Q ss_pred             CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420          85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI  164 (241)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  164 (241)
                                 ....++++|+|+.+++.+++++.                         ..   .+++.+..+|+..+++
T Consensus        60 -----------~~~~v~~vD~s~~~~~~a~~~~~-------------------------~~---~~~~~~~~~d~~~~~~  100 (263)
T 2yqz_A           60 -----------RGYRYIALDADAAMLEVFRQKIA-------------------------GV---DRKVQVVQADARAIPL  100 (263)
T ss_dssp             -----------TTCEEEEEESCHHHHHHHHHHTT-------------------------TS---CTTEEEEESCTTSCCS
T ss_pred             -----------CCCEEEEEECCHHHHHHHHHHhh-------------------------cc---CCceEEEEcccccCCC
Confidence                       24579999999999999988763                         11   1368999999999888


Q ss_pred             CCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE--ec---C---------------------------HHHHH
Q psy1420         165 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL--EF---S---------------------------HEEFK  212 (241)
Q Consensus       165 ~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~--~~---~---------------------------~~~~~  212 (241)
                      ++++||+|++..++++++++..+++++.++|||||++++.  ..   .                           .+++.
T Consensus       101 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (263)
T 2yqz_A          101 PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVE  180 (263)
T ss_dssp             CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred             CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHH
Confidence            7889999999999999999999999999999999999875  11   1                           05677


Q ss_pred             HHHHHCCCceEEEEEe
Q psy1420         213 SMIESAGFQYVTYENL  228 (241)
Q Consensus       213 ~~l~~~Gf~~~~~~~~  228 (241)
                      ++++++||.++.....
T Consensus       181 ~~l~~~Gf~~~~~~~~  196 (263)
T 2yqz_A          181 EALRRLGLKPRTREVA  196 (263)
T ss_dssp             HHHHHTTCCCEEEEEE
T ss_pred             HHHHHcCCCcceEEEe
Confidence            8899999997765543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.74  E-value=2.7e-17  Score=139.83  Aligned_cols=139  Identities=16%  Similarity=0.229  Sum_probs=114.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +...+++.+...++.+|||+|||+|..+             ..++.                  .....++++|+++.++
T Consensus        81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~  129 (254)
T 1xtp_A           81 GSRNFIASLPGHGTSRALDCGAGIGRIT-------------KNLLT------------------KLYATTDLLEPVKHML  129 (254)
T ss_dssp             HHHHHHHTSTTCCCSEEEEETCTTTHHH-------------HHTHH------------------HHCSEEEEEESCHHHH
T ss_pred             HHHHHHHhhcccCCCEEEEECCCcCHHH-------------HHHHH------------------hhcCEEEEEeCCHHHH
Confidence            3456667777778889999999999988             44443                  1234699999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKAL  188 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l  188 (241)
                      +.++++..                         ..    .++++.+.|+..++.+.++||+|++..+++++  .++..++
T Consensus       130 ~~a~~~~~-------------------------~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l  180 (254)
T 1xtp_A          130 EEAKRELA-------------------------GM----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFF  180 (254)
T ss_dssp             HHHHHHTT-------------------------TS----SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHH
T ss_pred             HHHHHHhc-------------------------cC----CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHH
Confidence            99998876                         21    36889999999888777899999999999999  4588999


Q ss_pred             HHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         189 SEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++.++|||||++++.+.                  +.+++.++++++||++++.....
T Consensus       181 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          181 KHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred             HHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence            999999999999999773                  23899999999999999887653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.74  E-value=1.3e-17  Score=142.24  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=115.9

Q ss_pred             HHHHHhhc-CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRL-GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l-~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ...++..+ ...++.+|||+|||+|..+             ..++.                  ....+++++|+++.++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~   82 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQT-------------LFLAD------------------YVKGQITGIDLFPDFI   82 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HCCSEEEEEESCHHHH
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHH-------------HHHHH------------------hCCCeEEEEECCHHHH
Confidence            34455555 4567889999999999988             44443                  1223899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         ..++. .++++.++|+..+|.+.++||+|++..+++++ ++..++++
T Consensus        83 ~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~  135 (257)
T 3f4k_A           83 EIFNENAV-------------------------KANCA-DRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNE  135 (257)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHH
T ss_pred             HHHHHHHH-------------------------HcCCC-CceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHH
Confidence            99999987                         55655 46999999999988888899999999999998 79999999


Q ss_pred             HHHhccCCcEEEEEecC-----------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEFS-----------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~-----------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +.++|||||++++.+..                       .+++.++++++||++++.....
T Consensus       136 ~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  197 (257)
T 3f4k_A          136 WSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILP  197 (257)
T ss_dssp             HHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEECC
T ss_pred             HHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEECC
Confidence            99999999999998732                       2788999999999999877664

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.74  E-value=9e-18  Score=147.50  Aligned_cols=138  Identities=14%  Similarity=0.198  Sum_probs=114.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+..+++.+|||+|||+|..+             ..++.                  ....+++++|+|+.+++
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~~  109 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTM-------------RHAVA------------------EYDVNVIGLTLSENQYA  109 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEECCHHHHH
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHH-------------HHHHH------------------hCCCEEEEEECCHHHHH
Confidence            355677777788999999999999988             44444                  11367999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH-------
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-------  184 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~-------  184 (241)
                      .+++++.                         ..++. +++++..+|+.++   +++||+|++..++++++++       
T Consensus       110 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~  160 (302)
T 3hem_A          110 HDKAMFD-------------------------EVDSP-RRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFE  160 (302)
T ss_dssp             HHHHHHH-------------------------HSCCS-SCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTT
T ss_pred             HHHHHHH-------------------------hcCCC-CceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchh
Confidence            9999987                         55554 5789999999876   5789999999999999665       


Q ss_pred             --HHHHHHHHHhccCCcEEEEEecCH-------------------------------------HHHHHHHHHCCCceEEE
Q psy1420         185 --DKALSEAYRVLKPGGRFLCLEFSH-------------------------------------EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       185 --~~~l~~~~~~LkpgG~l~i~~~~~-------------------------------------~~~~~~l~~~Gf~~~~~  225 (241)
                        ..+++++.++|||||++++.++..                                     +++.++++++||++++.
T Consensus       161 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~  240 (302)
T 3hem_A          161 RYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY  240 (302)
T ss_dssp             HHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEE
Confidence              799999999999999999876421                                     57889999999999988


Q ss_pred             EEec
Q psy1420         226 ENLT  229 (241)
Q Consensus       226 ~~~~  229 (241)
                      +...
T Consensus       241 ~~~~  244 (302)
T 3hem_A          241 HRIG  244 (302)
T ss_dssp             EECG
T ss_pred             EeCc
Confidence            8764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.74  E-value=1.5e-17  Score=146.51  Aligned_cols=145  Identities=15%  Similarity=0.089  Sum_probs=120.9

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..++.      ..          .....++++|+++.+++.+++++.  
T Consensus       116 l~~~~~vLDiGcG~G~~~-------------~~la~------~~----------~~~~~v~gvD~s~~~~~~a~~~~~--  164 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSEL-------------LALDY------SA----------CPGVQLVGIDYDPEALDGATRLAA--  164 (305)
T ss_dssp             CCTTCEEEETTCTTCHHH-------------HTSCC------TT----------CTTCEEEEEESCHHHHHHHHHHHT--
T ss_pred             CCCCCEEEEecCCCCHHH-------------HHHHH------hc----------CCCCeEEEEECCHHHHHHHHHHHH--
Confidence            357789999999999988             33321      01          145689999999999999999987  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHH---HHHHHHHhccC
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK---ALSEAYRVLKP  197 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~---~l~~~~~~Lkp  197 (241)
                                             ..++. .+++++++|+..++.+ ++||+|++..++++++++..   +++++.++|||
T Consensus       165 -----------------------~~~~~-~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  219 (305)
T 3ocj_A          165 -----------------------GHALA-GQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKP  219 (305)
T ss_dssp             -----------------------TSTTG-GGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEE
T ss_pred             -----------------------hcCCC-CceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCC
Confidence                                   44544 4689999999998876 89999999999999988875   79999999999


Q ss_pred             CcEEEEEec-----------------------------------------CHHHHHHHHHHCCCceEEEEEecCceeEEE
Q psy1420         198 GGRFLCLEF-----------------------------------------SHEEFKSMIESAGFQYVTYENLTFGVVAIH  236 (241)
Q Consensus       198 gG~l~i~~~-----------------------------------------~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~  236 (241)
                      ||++++.++                                         +.+++.++++++||+++++.....+....+
T Consensus       220 gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v  299 (305)
T 3ocj_A          220 GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTV  299 (305)
T ss_dssp             EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEE
T ss_pred             CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEE
Confidence            999998762                                         348899999999999999998777777788


Q ss_pred             eeecC
Q psy1420         237 SGFKL  241 (241)
Q Consensus       237 ~~~~~  241 (241)
                      +++||
T Consensus       300 ~a~Kp  304 (305)
T 3ocj_A          300 IARKP  304 (305)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            88887

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.74  E-value=1.9e-17  Score=140.58  Aligned_cols=130  Identities=18%  Similarity=0.216  Sum_probs=107.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                  .....++++|+++.+++.++++..   
T Consensus        78 ~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~~a~~~~~---  123 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRIT-------------KRLLL------------------PLFREVDMVDITEDFLVQAKTYLG---  123 (241)
T ss_dssp             CCCSEEEEETCTTTHHH-------------HHTTT------------------TTCSEEEEEESCHHHHHHHHHHTG---
T ss_pred             CCCCEEEEECCCCCHHH-------------HHHHH------------------hcCCEEEEEeCCHHHHHHHHHHhh---
Confidence            36789999999999988             43333                  123479999999999999998876   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG  199 (241)
                                            ..+.  .++++...|+..++.+.++||+|++..++++++++.  .+++++.++|||||
T Consensus       124 ----------------------~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  179 (241)
T 2ex4_A          124 ----------------------EEGK--RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNG  179 (241)
T ss_dssp             ----------------------GGGG--GEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             ----------------------hcCC--ceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCe
Confidence                                  2211  257889999988887777899999999999998854  99999999999999


Q ss_pred             EEEEEec-----------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         200 RFLCLEF-----------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       200 ~l~i~~~-----------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++++.+.                 +.+++.++++++||++++.....
T Consensus       180 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  226 (241)
T 2ex4_A          180 IIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE  226 (241)
T ss_dssp             EEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence            9999663                 34899999999999999987663

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.74  E-value=1.9e-17  Score=141.12  Aligned_cols=139  Identities=16%  Similarity=0.126  Sum_probs=116.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+++.+...++.+|||+|||+|..+             ..++.    .              ....++++|+++.++
T Consensus        24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~-------------~~la~----~--------------~~~~v~gvD~s~~~l   72 (256)
T 1nkv_A           24 KYATLGRVLRMKPGTRILDLGSGSGEML-------------CTWAR----D--------------HGITGTGIDMSSLFT   72 (256)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHH-------------HHHHH----H--------------TCCEEEEEESCHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH----h--------------cCCeEEEEeCCHHHH
Confidence            4566677777888999999999999988             44444    1              234789999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         ..++. +++++.++|+..++. +++||+|++..++++++++..++++
T Consensus        73 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~  125 (256)
T 1nkv_A           73 AQAKRRAE-------------------------ELGVS-ERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEEL  125 (256)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHH
T ss_pred             HHHHHHHH-------------------------hcCCC-cceEEEECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHH
Confidence            99999887                         55554 479999999998876 6789999999999999999999999


Q ss_pred             HHHhccCCcEEEEEec------------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420         191 AYRVLKPGGRFLCLEF------------------------SHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~------------------------~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ++++|||||++++.+.                        +..++.++++++||..++...
T Consensus       126 ~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  186 (256)
T 1nkv_A          126 LAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVL  186 (256)
T ss_dssp             HTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred             HHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEEe
Confidence            9999999999998752                        127889999999999887654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.74  E-value=2e-17  Score=143.75  Aligned_cols=138  Identities=17%  Similarity=0.189  Sum_probs=113.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.                  ....+++++|+|+.+++
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvd~s~~~~~  101 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATM-------------MRAVE------------------KYDVNVVGLTLSKNQAN  101 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHH-------------HHHHH------------------HcCCEEEEEECCHHHHH
Confidence            455667777788899999999999988             44442                  12458999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~  189 (241)
                      .+++++.                         ..+.. +++++..+|+..+|   ++||+|++..+++++  +++..+++
T Consensus       102 ~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~  152 (287)
T 1kpg_A          102 HVQQLVA-------------------------NSENL-RSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFS  152 (287)
T ss_dssp             HHHHHHH-------------------------TCCCC-SCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHH
T ss_pred             HHHHHHH-------------------------hcCCC-CCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHH
Confidence            9999887                         44544 47899999998775   789999999999999  67899999


Q ss_pred             HHHHhccCCcEEEEEec-------------------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEF-------------------------------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~-------------------------------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++.++|||||++++.+.                                     +.+++.++++++||++++.....
T Consensus       153 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          153 LAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             HHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            99999999999998652                                     23788899999999999887653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.74  E-value=2.4e-17  Score=142.37  Aligned_cols=142  Identities=23%  Similarity=0.346  Sum_probs=116.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.......++.+|||+|||+|.++             ..+..    .             .+...++++|+++.+
T Consensus        24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~----~-------------~~~~~v~~vD~s~~~   73 (276)
T 3mgg_A           24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQT-------------VILAK----N-------------NPDAEITSIDISPES   73 (276)
T ss_dssp             HHHHHHHTTCCCCTTCEEEETTCTTSHHH-------------HHHHH----H-------------CTTSEEEEEESCHHH
T ss_pred             HHHHHHhhcccCCCCCeEEEecCCCCHHH-------------HHHHH----h-------------CCCCEEEEEECCHHH
Confidence            34445555555678889999999999988             43333    1             025689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.+++++.                         ..+++  ++++...|+..++.+.++||+|++..++++++++..+++
T Consensus        74 ~~~a~~~~~-------------------------~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~  126 (276)
T 3mgg_A           74 LEKARENTE-------------------------KNGIK--NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALK  126 (276)
T ss_dssp             HHHHHHHHH-------------------------HTTCC--SEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHH
T ss_pred             HHHHHHHHH-------------------------HcCCC--CcEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHH
Confidence            999999887                         44444  689999999998888889999999999999999999999


Q ss_pred             HHHHhccCCcEEEEEecCH---------------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH---------------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~---------------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++.++|||||++++.+...                                 +++.++++++||++++.+..
T Consensus       127 ~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          127 SLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR  198 (276)
T ss_dssp             HHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence            9999999999999976321                                 67888999999999988865

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.74  E-value=2.2e-17  Score=150.54  Aligned_cols=133  Identities=20%  Similarity=0.257  Sum_probs=108.2

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|.++             ..++..++                ...+++++|+++.+++.+++++.  
T Consensus        81 ~~~~~~VLDlGcG~G~~~-------------~~la~~~~----------------~~~~v~gvD~s~~~l~~a~~~~~--  129 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDV-------------YLASKLVG----------------EHGKVIGVDMLDNQLEVARKYVE--  129 (383)
T ss_dssp             GGTTCEEEEESCTTSHHH-------------HHHHHHHT----------------TTCEEEEEECCHHHHHHHHHTHH--
T ss_pred             CCCCCEEEEecCccCHHH-------------HHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHH--
Confidence            357789999999999988             44433111                24589999999999999998865  


Q ss_pred             CCccccccccceecceeeeeecccc-----C-CCCCCeeEEecccCCC------CCCCCceeEEeeeehhhccccHHHHH
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKI-----D-IPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~d~~~~------~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                                             ..     + ...++++++.+|+..+      ++++++||+|+++.++++++++..++
T Consensus       130 -----------------------~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l  186 (383)
T 4fsd_A          130 -----------------------YHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALF  186 (383)
T ss_dssp             -----------------------HHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHH
T ss_pred             -----------------------HhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHH
Confidence                                   22     2 2224799999999887      77788999999999999999999999


Q ss_pred             HHHHHhccCCcEEEEEec-------------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420         189 SEAYRVLKPGGRFLCLEF-------------------------SHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~-------------------------~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ++++++|||||+|++.+.                         ..+++.++++++||..+++..
T Consensus       187 ~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          187 KEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence            999999999999999762                         228899999999998776544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.74  E-value=1.7e-17  Score=141.63  Aligned_cols=138  Identities=15%  Similarity=0.283  Sum_probs=116.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.                  ....+++++|+++.+++
T Consensus        44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~   92 (266)
T 3ujc_A           44 TKKILSDIELNENSKVLDIGSGLGGGC-------------MYINE------------------KYGAHTHGIDICSNIVN   92 (266)
T ss_dssp             HHHHTTTCCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH------------------HcCCEEEEEeCCHHHHH
Confidence            456677777788899999999999988             44444                  12458999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~  189 (241)
                      .++++..                         ..    +++++..+|+..++.+.++||+|++..+++++  +++..+++
T Consensus        93 ~a~~~~~-------------------------~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~  143 (266)
T 3ujc_A           93 MANERVS-------------------------GN----NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQ  143 (266)
T ss_dssp             HHHHTCC-------------------------SC----TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             HHHHHhh-------------------------cC----CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHH
Confidence            9998765                         21    36899999999988888899999999999999  88999999


Q ss_pred             HHHHhccCCcEEEEEec------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEF------------------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~------------------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++.++|||||++++.++                        +.+++.++++++||++++.....
T Consensus       144 ~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          144 KCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLS  207 (266)
T ss_dssp             HHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred             HHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeCC
Confidence            99999999999999763                        22889999999999999888764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.72  E-value=5.3e-17  Score=140.92  Aligned_cols=131  Identities=15%  Similarity=0.168  Sum_probs=106.2

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..+..                  .....++++|+++.+++.++++..  
T Consensus        62 ~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s~~~~~~a~~~~~--  108 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDL-------------LKYER------------------AGIGEYYGVDIAEVSINDARVRAR--  108 (298)
T ss_dssp             CCTTCEEEEETCTTTTTH-------------HHHHH------------------HTCSEEEEEESCHHHHHHHHHHHH--
T ss_pred             CCCCCeEEEECCCCCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH--
Confidence            357789999999999988             33332                  123479999999999999999887  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhc----cccHHHHHHHHHHhc
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRN----VTRIDKALSEAYRVL  195 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~----~~~~~~~l~~~~~~L  195 (241)
                                             ..+.. .++.+.++|+...+. +.++||+|++..++++    ..++..+++++.++|
T Consensus       109 -----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~L  164 (298)
T 1ri5_A          109 -----------------------NMKRR-FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHL  164 (298)
T ss_dssp             -----------------------TSCCS-SEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTE
T ss_pred             -----------------------hcCCC-ccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhc
Confidence                                   44433 468999999998877 5679999999999876    567789999999999


Q ss_pred             cCCcEEEEEecC-----------------------------------------------------HHHHHHHHHHCCCce
Q psy1420         196 KPGGRFLCLEFS-----------------------------------------------------HEEFKSMIESAGFQY  222 (241)
Q Consensus       196 kpgG~l~i~~~~-----------------------------------------------------~~~~~~~l~~~Gf~~  222 (241)
                      ||||++++....                                                     .++++++++++||++
T Consensus       165 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~  244 (298)
T 1ri5_A          165 RPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSL  244 (298)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEE
T ss_pred             CCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEE
Confidence            999999976432                                                     278899999999999


Q ss_pred             EEEEEe
Q psy1420         223 VTYENL  228 (241)
Q Consensus       223 ~~~~~~  228 (241)
                      ++...+
T Consensus       245 v~~~~~  250 (298)
T 1ri5_A          245 VERKGF  250 (298)
T ss_dssp             EEEEEH
T ss_pred             EEecCH
Confidence            888765

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.72  E-value=3.4e-17  Score=137.81  Aligned_cols=167  Identities=17%  Similarity=0.217  Sum_probs=119.9

Q ss_pred             HHHh-hhhhccccchhhhh---hhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           7 EVFE-NVAKSYDTMNDAMS---FGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         7 ~~f~-~~~~~yd~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      ++|+ .++..|+.+.....   ....+.+.+.+....  .++.+|||+|||+|..+             ..++.      
T Consensus         2 ~~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~-------------~~l~~------   60 (239)
T 3bxo_A            2 HMYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHL-------------EHFTK------   60 (239)
T ss_dssp             --CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHH-------------HHHHH------
T ss_pred             ccccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHH-------------HHHHH------
Confidence            4566 67777776532211   111122333344333  46779999999999988             44443      


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++++|+++.+++.++++..                                ++++..+|+...
T Consensus        61 -------------~~~~v~~~D~s~~~~~~a~~~~~--------------------------------~~~~~~~d~~~~   95 (239)
T 3bxo_A           61 -------------EFGDTAGLELSEDMLTHARKRLP--------------------------------DATLHQGDMRDF   95 (239)
T ss_dssp             -------------HHSEEEEEESCHHHHHHHHHHCT--------------------------------TCEEEECCTTTC
T ss_pred             -------------hCCcEEEEeCCHHHHHHHHHhCC--------------------------------CCEEEECCHHHc
Confidence                         22379999999999999987643                                478899999888


Q ss_pred             CCCCCceeEEeeee-hhhcc---ccHHHHHHHHHHhccCCcEEEEEe---------------------------------
Q psy1420         163 PIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE---------------------------------  205 (241)
Q Consensus       163 ~~~~~~~D~V~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~---------------------------------  205 (241)
                      +. .++||+|+|.. +++++   .+...+++++.++|||||++++.+                                 
T Consensus        96 ~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (239)
T 3bxo_A           96 RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE  174 (239)
T ss_dssp             CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecC
Confidence            76 67899999655 88887   456799999999999999998852                                 


Q ss_pred             ------------------------------cCHHHHHHHHHHCCCceEEEEEecCceeEEEeeecC
Q psy1420         206 ------------------------------FSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL  241 (241)
Q Consensus       206 ------------------------------~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~  241 (241)
                                                    ++.+++.++++++||+++.+. ...+...+++|+||
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~-~~~~~~~~~va~K~  239 (239)
T 3bxo_A          175 GNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLE-GGPSGRGLFVGVPA  239 (239)
T ss_dssp             TTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES-STTTSSCEEEEEEC
T ss_pred             CCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeE-cCCCCceEEEEecC
Confidence                                          123899999999999766554 34566788899887

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.72  E-value=1.3e-16  Score=134.46  Aligned_cols=167  Identities=17%  Similarity=0.289  Sum_probs=124.1

Q ss_pred             HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420           8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK   87 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (241)
                      .|+.++..|+.....   .....+.+.+.+.+.  ++.+|||+|||+|..+             ..++.           
T Consensus         3 ~y~~~a~~yd~~~~~---~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~-------------~~l~~-----------   53 (243)
T 3d2l_A            3 AYEQFAYVYDELMQD---VPYPEWVAWVLEQVE--PGKRIADIGCGTGTAT-------------LLLAD-----------   53 (243)
T ss_dssp             ---CTTHHHHHHTTT---CCHHHHHHHHHHHSC--TTCEEEEESCTTCHHH-------------HHHTT-----------
T ss_pred             hHHHHHHHHHHhhhc---ccHHHHHHHHHHHcC--CCCeEEEecCCCCHHH-------------HHHhh-----------
Confidence            588888888885322   223345566666654  4579999999999988             44443           


Q ss_pred             cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420          88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD  167 (241)
Q Consensus        88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (241)
                              . ..++++|+++.+++.++++..                         ..+   .++++..+|+...+.+ +
T Consensus        54 --------~-~~v~~vD~s~~~~~~a~~~~~-------------------------~~~---~~~~~~~~d~~~~~~~-~   95 (243)
T 3d2l_A           54 --------H-YEVTGVDLSEEMLEIAQEKAM-------------------------ETN---RHVDFWVQDMRELELP-E   95 (243)
T ss_dssp             --------T-SEEEEEESCHHHHHHHHHHHH-------------------------HTT---CCCEEEECCGGGCCCS-S
T ss_pred             --------C-CeEEEEECCHHHHHHHHHhhh-------------------------hcC---CceEEEEcChhhcCCC-C
Confidence                    2 579999999999999998876                         333   2588999999888765 7


Q ss_pred             ceeEEeeee-hhhcc---ccHHHHHHHHHHhccCCcEEEEEe--------------------------------------
Q psy1420         168 SYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE--------------------------------------  205 (241)
Q Consensus       168 ~~D~V~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~--------------------------------------  205 (241)
                      +||+|++.. +++++   .++..+++++.++|||||++++..                                      
T Consensus        96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (243)
T 3d2l_A           96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVV  175 (243)
T ss_dssp             CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEE
T ss_pred             CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEE
Confidence            899999986 88887   566789999999999999988721                                      


Q ss_pred             -------------------------cCHHHHHHHHHHCCCceEEEEEec-------CceeEEEeeecC
Q psy1420         206 -------------------------FSHEEFKSMIESAGFQYVTYENLT-------FGVVAIHSGFKL  241 (241)
Q Consensus       206 -------------------------~~~~~~~~~l~~~Gf~~~~~~~~~-------~~~~~~~~~~~~  241 (241)
                                               ++.+++.++++++||+++++....       ....-+++++||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~  243 (243)
T 3d2l_A          176 HELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI  243 (243)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred             EEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence                                     234899999999999998886431       123446778876

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.71  E-value=8.5e-17  Score=134.61  Aligned_cols=131  Identities=21%  Similarity=0.359  Sum_probs=110.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++.++++..   
T Consensus        29 ~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~~---   73 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKIS-------------LELAS-------------------KGYSVTGIDINSEAIRLAETAAR---   73 (235)
T ss_dssp             CTTCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHTT---
T ss_pred             CCCCeEEEECCCCCHHH-------------HHHHh-------------------CCCeEEEEECCHHHHHHHHHHHH---
Confidence            46779999999999988             44444                   24579999999999999998877   


Q ss_pred             CccccccccceecceeeeeeccccCCC---CCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH---HHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIP---NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID---KALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~---~~l~~~~~~L  195 (241)
                                            ..++.   ..++.+...|+..++.+.++||+|++..++++++++.   .+++++.++|
T Consensus        74 ----------------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L  131 (235)
T 3sm3_A           74 ----------------------SPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVL  131 (235)
T ss_dssp             ----------------------CCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHE
T ss_pred             ----------------------hcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHc
Confidence                                  33321   1368899999999888788999999999999999888   9999999999


Q ss_pred             cCCcEEEEEec-------------------------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         196 KPGGRFLCLEF-------------------------------------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       196 kpgG~l~i~~~-------------------------------------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ||||++++.++                                           +.+++.++++++||+++++....
T Consensus       132 ~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~  208 (235)
T 3sm3_A          132 KPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKE  208 (235)
T ss_dssp             EEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEecc
Confidence            99999998753                                           34899999999999999887653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.71  E-value=2.9e-17  Score=131.81  Aligned_cols=130  Identities=15%  Similarity=0.149  Sum_probs=106.0

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ++.+...++.+|||+|||+|..+             ..+..                   ....++++|+++.+++.+++
T Consensus        10 ~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~   57 (170)
T 3i9f_A           10 LPNIFEGKKGVIVDYGCGNGFYC-------------KYLLE-------------------FATKLYCIDINVIALKEVKE   57 (170)
T ss_dssp             HHHHHSSCCEEEEEETCTTCTTH-------------HHHHT-------------------TEEEEEEECSCHHHHHHHHH
T ss_pred             HHhcCcCCCCeEEEECCCCCHHH-------------HHHHh-------------------hcCeEEEEeCCHHHHHHHHH
Confidence            33445567889999999999988             44443                   12379999999999999887


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                      +.                                +++++...|   .+.+.++||+|++..++++++++..+++++.++|
T Consensus        58 ~~--------------------------------~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L  102 (170)
T 3i9f_A           58 KF--------------------------------DSVITLSDP---KEIPDNSVDFILFANSFHDMDDKQHVISEVKRIL  102 (170)
T ss_dssp             HC--------------------------------TTSEEESSG---GGSCTTCEEEEEEESCSTTCSCHHHHHHHHHHHE
T ss_pred             hC--------------------------------CCcEEEeCC---CCCCCCceEEEEEccchhcccCHHHHHHHHHHhc
Confidence            62                                367888888   5566789999999999999999999999999999


Q ss_pred             cCCcEEEEEecCH---------------HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420         196 KPGGRFLCLEFSH---------------EEFKSMIESAGFQYVTYENLTFGVVA  234 (241)
Q Consensus       196 kpgG~l~i~~~~~---------------~~~~~~l~~~Gf~~~~~~~~~~~~~~  234 (241)
                      ||||++++.++..               +++.++++  ||++++..........
T Consensus       103 ~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~  154 (170)
T 3i9f_A          103 KDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFG  154 (170)
T ss_dssp             EEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEE
T ss_pred             CCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEE
Confidence            9999999987543               78999998  9999998887643333

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.71  E-value=3.8e-17  Score=138.03  Aligned_cols=128  Identities=14%  Similarity=0.163  Sum_probs=106.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.++++..    
T Consensus        66 ~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~~a~~~~~----  109 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDV-------------VAMAS-------------------PERFVVGLDISESALAKANETYG----  109 (235)
T ss_dssp             CCEEEEEETCTTCHHH-------------HHHCB-------------------TTEEEEEECSCHHHHHHHHHHHT----
T ss_pred             CCCCEEEeCCCCCHHH-------------HHHHh-------------------CCCeEEEEECCHHHHHHHHHHhh----
Confidence            3459999999999988             33333                   35679999999999999998876    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~  200 (241)
                                           ..+.. .++++.++|+...+ +.++||+|++..++++++  ++..+++++.++|||||+
T Consensus       110 ---------------------~~~~~-~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  166 (235)
T 3lcc_A          110 ---------------------SSPKA-EYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGE  166 (235)
T ss_dssp             ---------------------TSGGG-GGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred             ---------------------ccCCC-cceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcE
Confidence                                 22211 36899999999876 346899999999999988  889999999999999999


Q ss_pred             EEEEecC-------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         201 FLCLEFS-------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       201 l~i~~~~-------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++.++.             .+++.++++++||++++++...
T Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          167 LITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             EEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred             EEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence            9987653             3899999999999999988765

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.70  E-value=2.8e-16  Score=135.90  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=109.2

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|..+             ...+.                  ....+++++|+|+.|++.+++++..
T Consensus        52 ~~~~g~~vLDiGCG~G~~~-------------~~~~~------------------~~~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQ-------------VLAAC------------------DSFQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGG-------------GTTGG------------------GTEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEeCCCccHHH-------------HHHHH------------------hhhcceeeccccHHHHHHHHHHHhc
Confidence            4567889999999999876             22211                  0224699999999999999988763


Q ss_pred             CCCccccccccce---ecceeeeeec-c--ccCCCCCCee-EEecccCCC-CC---CCCceeEEeeeehhhcc----ccH
Q psy1420         120 LPIESDSYSAYTI---AFGIRNVTRI-D--KIDIPNPRLR-FLEANAEEL-PI---ESDSYSAYTIAFGIRNV----TRI  184 (241)
Q Consensus       120 ~~~~~~~~~~~~~---~~~~~~~~~~-~--~~~~~~~~~~-~~~~d~~~~-~~---~~~~~D~V~~~~~l~~~----~~~  184 (241)
                      .+...|   |-+.   ..++.+-... .  ..... .++. ++++|+... |.   ..++||+|+++++++++    ++.
T Consensus       101 ~~~~~d---~s~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~  176 (263)
T 2a14_A          101 EPGAYD---WTPAVKFACELEGNSGRWEEKEEKLR-AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY  176 (263)
T ss_dssp             CTTCCC---CHHHHHHHHHHTTCGGGHHHHHHHHH-HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH
T ss_pred             CCCccc---chHHHHHHHhcCCCCcchhhHHHHHH-hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHH
Confidence            221111   0000   0000000000 0  00000 1233 778887773 33   24689999999999985    566


Q ss_pred             HHHHHHHHHhccCCcEEEEEe------------------cCHHHHHHHHHHCCCceEEEEEec---------CceeEEEe
Q psy1420         185 DKALSEAYRVLKPGGRFLCLE------------------FSHEEFKSMIESAGFQYVTYENLT---------FGVVAIHS  237 (241)
Q Consensus       185 ~~~l~~~~~~LkpgG~l~i~~------------------~~~~~~~~~l~~~Gf~~~~~~~~~---------~~~~~~~~  237 (241)
                      ..++++++++|||||+|++..                  ++.+++.++++++||++++.....         .....+++
T Consensus       177 ~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~  256 (263)
T 2a14_A          177 RAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIV  256 (263)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEE
Confidence            799999999999999999875                  244899999999999999888753         12345567


Q ss_pred             eecC
Q psy1420         238 GFKL  241 (241)
Q Consensus       238 ~~~~  241 (241)
                      |+|+
T Consensus       257 a~K~  260 (263)
T 2a14_A          257 ARKK  260 (263)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.70  E-value=3.6e-17  Score=141.94  Aligned_cols=133  Identities=20%  Similarity=0.220  Sum_probs=110.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|.++             ..++.                   ....++++|+|+.+++
T Consensus        46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~   93 (279)
T 3ccf_A           46 GEDLLQLLNPQPGEFILDLGCGTGQLT-------------EKIAQ-------------------SGAEVLGTDNAATMIE   93 (279)
T ss_dssp             CCHHHHHHCCCTTCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEecCCCCHHH-------------HHHHh-------------------CCCeEEEEECCHHHHH
Confidence            345556666778889999999999988             44443                   3568999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .++++..                                ++.+..+|+..++. +++||+|++..++++++++..+++++
T Consensus        94 ~a~~~~~--------------------------------~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~  140 (279)
T 3ccf_A           94 KARQNYP--------------------------------HLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASI  140 (279)
T ss_dssp             HHHHHCT--------------------------------TSCEEECCTTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred             HHHhhCC--------------------------------CCEEEECChhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHH
Confidence            9886643                                57789999998876 57899999999999999999999999


Q ss_pred             HHhccCCcEEEEEecC---------------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         192 YRVLKPGGRFLCLEFS---------------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~---------------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      .++|||||++++....                                 .+++.++++++||++++.....
T Consensus       141 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  211 (279)
T 3ccf_A          141 HQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFN  211 (279)
T ss_dssp             HHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEEec
Confidence            9999999999986532                                 1567899999999998877654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.70  E-value=2.9e-16  Score=138.62  Aligned_cols=138  Identities=15%  Similarity=0.157  Sum_probs=113.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.                  .....++++|+++.+++
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~~  127 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTM-------------RRAVE------------------RFDVNVIGLTLSKNQHA  127 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHH-------------HHHHH------------------HCCCEEEEEECCHHHHH
Confidence            456667777788899999999999988             44443                  11458999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~  189 (241)
                      .++++..                         ..++. +++++..+|+..++   ++||+|++..+++++  +++..+++
T Consensus       128 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~  178 (318)
T 2fk8_A          128 RCEQVLA-------------------------SIDTN-RSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFK  178 (318)
T ss_dssp             HHHHHHH-------------------------TSCCS-SCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHH
T ss_pred             HHHHHHH-------------------------hcCCC-CceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHH
Confidence            9999887                         44544 46899999998775   689999999999998  68899999


Q ss_pred             HHHHhccCCcEEEEEecC-------------------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEFS-------------------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~-------------------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++.++|||||++++.++.                                     .+++.++++++||++++...+.
T Consensus       179 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  255 (318)
T 2fk8_A          179 RCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLR  255 (318)
T ss_dssp             HHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred             HHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecc
Confidence            999999999999986532                                     2678899999999998877653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.70  E-value=7.2e-16  Score=128.64  Aligned_cols=138  Identities=17%  Similarity=0.251  Sum_probs=109.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      +.+.+.+.+.+.  ++.+|||+|||+|..+             ..+..                   ...+++++|+++.
T Consensus        26 ~~~~~~l~~~~~--~~~~vLDlG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~   71 (227)
T 1ve3_A           26 ETLEPLLMKYMK--KRGKVLDLACGVGGFS-------------FLLED-------------------YGFEVVGVDISED   71 (227)
T ss_dssp             HHHHHHHHHSCC--SCCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHH
T ss_pred             HHHHHHHHHhcC--CCCeEEEEeccCCHHH-------------HHHHH-------------------cCCEEEEEECCHH
Confidence            344455555544  3779999999999988             33333                   2337999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh--hhccccHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTRIDK  186 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~--l~~~~~~~~  186 (241)
                      +++.++++..                         ..+   .++++.++|+...+.+.++||+|++..+  +++.+++..
T Consensus        72 ~~~~a~~~~~-------------------------~~~---~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~  123 (227)
T 1ve3_A           72 MIRKAREYAK-------------------------SRE---SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQ  123 (227)
T ss_dssp             HHHHHHHHHH-------------------------HTT---CCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHH
T ss_pred             HHHHHHHHHH-------------------------hcC---CCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHH
Confidence            9999998876                         333   3688999999988877789999999988  556678889


Q ss_pred             HHHHHHHhccCCcEEEEEecCH--------------------------------------------------HHHHHHHH
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFSH--------------------------------------------------EEFKSMIE  216 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~~--------------------------------------------------~~~~~~l~  216 (241)
                      +++++.++|||||++++.+...                                                  .++.++++
T Consensus       124 ~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~  203 (227)
T 1ve3_A          124 VFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLA  203 (227)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhchHHHHHHH
Confidence            9999999999999998876431                                                  46788999


Q ss_pred             HCCCceEEEEEe
Q psy1420         217 SAGFQYVTYENL  228 (241)
Q Consensus       217 ~~Gf~~~~~~~~  228 (241)
                      ++||..++....
T Consensus       204 ~~GF~~v~~~~~  215 (227)
T 1ve3_A          204 KLYFTKEAEEKV  215 (227)
T ss_dssp             TTTEEEEEEEEE
T ss_pred             HHhhhHHHHHHh
Confidence            999999999886

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.69  E-value=3.5e-17  Score=142.19  Aligned_cols=131  Identities=18%  Similarity=0.248  Sum_probs=90.8

Q ss_pred             HHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420           6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ   85 (241)
Q Consensus         6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (241)
                      .+.|+..++.|+.......    ..+.+.+.+...  .+.+|||+|||+|..+             ..+..         
T Consensus         8 ~d~F~~~a~~Y~~~Rp~yp----~~l~~~l~~~~~--~~~~vLDvGcGtG~~~-------------~~l~~---------   59 (257)
T 4hg2_A            8 KDHFTPVADAYRAFRPRYP----RALFRWLGEVAP--ARGDALDCGCGSGQAS-------------LGLAE---------   59 (257)
T ss_dssp             ------------CCCCCCC----HHHHHHHHHHSS--CSSEEEEESCTTTTTH-------------HHHHT---------
T ss_pred             HHHHHHHHHHHHHHCCCcH----HHHHHHHHHhcC--CCCCEEEEcCCCCHHH-------------HHHHH---------
Confidence            4668888999987532111    123344444432  3458999999999998             44444         


Q ss_pred             CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420          86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE  165 (241)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (241)
                                ...+++++|+|+.|++.+++.                                 +++.+.+++++.+|++
T Consensus        60 ----------~~~~v~gvD~s~~ml~~a~~~---------------------------------~~v~~~~~~~e~~~~~   96 (257)
T 4hg2_A           60 ----------FFERVHAVDPGEAQIRQALRH---------------------------------PRVTYAVAPAEDTGLP   96 (257)
T ss_dssp             ----------TCSEEEEEESCHHHHHTCCCC---------------------------------TTEEEEECCTTCCCCC
T ss_pred             ----------hCCEEEEEeCcHHhhhhhhhc---------------------------------CCceeehhhhhhhccc
Confidence                      356899999999998765321                                 3689999999999999


Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      +++||+|++..++|++ ++.+++++++|+|||||+|++..+..
T Consensus        97 ~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           97 PASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             SSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            9999999999999776 58899999999999999999877554

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.69  E-value=1.6e-16  Score=135.39  Aligned_cols=143  Identities=12%  Similarity=0.034  Sum_probs=112.2

Q ss_pred             hhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhh
Q psy1420          13 AKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYL   92 (241)
Q Consensus        13 ~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (241)
                      +..|+.....     .......+++.+...++.+|||+|||+|..+             ..+..    ..          
T Consensus         8 ~~~y~~~~~~-----~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~----~~----------   55 (259)
T 2p35_A            8 AQQYLKFEDE-----RTRPARDLLAQVPLERVLNGYDLGCGPGNST-------------ELLTD----RY----------   55 (259)
T ss_dssp             CGGGBCCCCG-----GGHHHHHHHTTCCCSCCSSEEEETCTTTHHH-------------HHHHH----HH----------
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHhcCCCCCCEEEEecCcCCHHH-------------HHHHH----hC----------
Confidence            5567664332     1223345667777778889999999999988             44433    10          


Q ss_pred             hcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEE
Q psy1420          93 VESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAY  172 (241)
Q Consensus        93 ~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V  172 (241)
                         +...++++|+++.+++.++++.                                +++.+..+|+...+ ++++||+|
T Consensus        56 ---~~~~v~~~D~s~~~~~~a~~~~--------------------------------~~~~~~~~d~~~~~-~~~~fD~v   99 (259)
T 2p35_A           56 ---GVNVITGIDSDDDMLEKAADRL--------------------------------PNTNFGKADLATWK-PAQKADLL   99 (259)
T ss_dssp             ---CTTSEEEEESCHHHHHHHHHHS--------------------------------TTSEEEECCTTTCC-CSSCEEEE
T ss_pred             ---CCCEEEEEECCHHHHHHHHHhC--------------------------------CCcEEEECChhhcC-ccCCcCEE
Confidence               2568999999999999988763                                25789999999887 67799999


Q ss_pred             eeeehhhccccHHHHHHHHHHhccCCcEEEEEecC-----------------------------------HHHHHHHHHH
Q psy1420         173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS-----------------------------------HEEFKSMIES  217 (241)
Q Consensus       173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-----------------------------------~~~~~~~l~~  217 (241)
                      +++.++++++++..++++++++|||||++++....                                   .+++.+++++
T Consensus       100 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  179 (259)
T 2p35_A          100 YANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSP  179 (259)
T ss_dssp             EEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGG
T ss_pred             EEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999987531                                   1678899999


Q ss_pred             CCCceE
Q psy1420         218 AGFQYV  223 (241)
Q Consensus       218 ~Gf~~~  223 (241)
                      +||.+.
T Consensus       180 aGf~v~  185 (259)
T 2p35_A          180 KSSRVD  185 (259)
T ss_dssp             GEEEEE
T ss_pred             cCCceE
Confidence            999743

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.69  E-value=1.6e-16  Score=139.07  Aligned_cols=135  Identities=15%  Similarity=0.281  Sum_probs=98.3

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCC--CceeecCChHhHHHHHHHHh
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ--FPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ..++.+|||+|||+|..+             ..++..+.   ...          ...  .++++|+|+.|++.+++++.
T Consensus        50 ~~~~~~VLDiG~GtG~~~-------------~~~l~~l~---~~~----------~~~~v~~~~vD~S~~ml~~a~~~~~  103 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEID-------------LQILSKVQ---AQY----------PGVCINNEVVEPSAEQIAKYKELVA  103 (292)
T ss_dssp             TCSEEEEEEETCTTSHHH-------------HHHHHHHH---HHS----------TTCEEEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEcCCCCHHH-------------HHHHHHHH---hhC----------CCceeeEEEEeCCHHHHHHHHHHHH
Confidence            356789999999999876             33333111   111          123  24999999999999998876


Q ss_pred             cCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCC------CCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELP------IESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~------~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                                               .. ++.+-++.+...++..++      +++++||+|++..++++++++.++|+++
T Consensus       104 -------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~  158 (292)
T 2aot_A          104 -------------------------KTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFF  158 (292)
T ss_dssp             -------------------------TCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred             -------------------------hccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHH
Confidence                                     21 222112344556655433      4467899999999999999999999999


Q ss_pred             HHhccCCcEEEEEecC--------------------------HHHHHHHHHHCCCceEEEE
Q psy1420         192 YRVLKPGGRFLCLEFS--------------------------HEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~--------------------------~~~~~~~l~~~Gf~~~~~~  226 (241)
                      +++|||||++++....                          .+++.++++++||+++...
T Consensus       159 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  219 (292)
T 2aot_A          159 HSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYD  219 (292)
T ss_dssp             HHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHCCCceEEEE
Confidence            9999999999986422                          2688999999999987643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.68  E-value=1.5e-15  Score=137.64  Aligned_cols=150  Identities=16%  Similarity=0.158  Sum_probs=121.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+.+.++..++.+|||+|||+|..+             ..++.    .   .          +..+++++|+ +.+++
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~  239 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLM-------------AAVLD----A---F----------PGLRGTLLER-PPVAE  239 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHH
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHH-------------HHHHH----H---C----------CCCeEEEEcC-HHHHH
Confidence            345666667777889999999999988             44443    1   1          3457899999 99999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~  189 (241)
                      .+++++.                         +.++. +++++...|+. .+.+. +||+|++..++|++++..  ++|+
T Consensus       240 ~a~~~~~-------------------------~~~l~-~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~  291 (369)
T 3gwz_A          240 EARELLT-------------------------GRGLA-DRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILR  291 (369)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             HHHHhhh-------------------------hcCcC-CceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHH
Confidence            9998887                         55554 57999999998 45544 799999999999998876  8999


Q ss_pred             HHHHhccCCcEEEEEecC--------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         190 EAYRVLKPGGRFLCLEFS--------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~--------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      ++++.|+|||++++.+..                          .++|+++++++||+++++.....+...++.+++
T Consensus       292 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          292 RIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             HHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             HHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence            999999999999997622                          288999999999999999886667777777765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.68  E-value=3.7e-16  Score=127.66  Aligned_cols=133  Identities=15%  Similarity=0.158  Sum_probs=107.8

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++.+
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a   70 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNS-------------LYLAA-------------------NGYDVDAWDKNAMSIANV   70 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHH
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHH
Confidence            3445556667789999999999988             44444                   245799999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHH
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEA  191 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~  191 (241)
                      +++..                         ..+++  ++++...|+...+. .++||+|++..++++++  ++..+++++
T Consensus        71 ~~~~~-------------------------~~~~~--~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~  122 (199)
T 2xvm_A           71 ERIKS-------------------------IENLD--NLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANM  122 (199)
T ss_dssp             HHHHH-------------------------HHTCT--TEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHH
T ss_pred             HHHHH-------------------------hCCCC--CcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHH
Confidence            98876                         44443  58899999998877 78999999999999987  789999999


Q ss_pred             HHhccCCcEEEEEec----------------CHHHHHHHHHHCCCceEEEEEe
Q psy1420         192 YRVLKPGGRFLCLEF----------------SHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~----------------~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .++|||||++++.+.                +.+++.+++++  |++++....
T Consensus       123 ~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~  173 (199)
T 2xvm_A          123 QRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED  173 (199)
T ss_dssp             HHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             HHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence            999999999887642                33888999876  998887644

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.68  E-value=8.2e-16  Score=138.47  Aligned_cols=148  Identities=16%  Similarity=0.242  Sum_probs=121.4

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++.+...++.+|||+|||+|..+             ..++.    .   .          +..+++++|+ +.+++.
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~  228 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDIS-------------AAMLK----H---F----------PELDSTILNL-PGAIDL  228 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHH-------------HHHHH----H---C----------TTCEEEEEEC-GGGHHH
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHH-------------HHHHH----H---C----------CCCeEEEEec-HHHHHH
Confidence            45666667778889999999999988             44443    1   0          2457999999 999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~  190 (241)
                      +++++.                         +.++. +++++..+|+...+.+.  .|+|++..+++++++  ..++|++
T Consensus       229 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~  280 (359)
T 1x19_A          229 VNENAA-------------------------EKGVA-DRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKK  280 (359)
T ss_dssp             HHHHHH-------------------------HTTCT-TTEEEEECCTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHH
T ss_pred             HHHHHH-------------------------hcCCC-CCEEEEeCccccCCCCC--CCEEEEechhccCCHHHHHHHHHH
Confidence            998887                         44554 46999999999876654  399999999999987  7899999


Q ss_pred             HHHhccCCcEEEEEe------------------------------cCHHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         191 AYRVLKPGGRFLCLE------------------------------FSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~------------------------------~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      ++++|||||++++.+                              .+.+++.++++++||+.+++....  ...++.++|
T Consensus       281 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~--~~~vi~a~k  358 (359)
T 1x19_A          281 AFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY--DHLLVQAVK  358 (359)
T ss_dssp             HHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET--TEEEEEEEC
T ss_pred             HHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC--CceEEEEeC
Confidence            999999999998876                              233789999999999999998876  567888988


Q ss_pred             C
Q psy1420         241 L  241 (241)
Q Consensus       241 ~  241 (241)
                      |
T Consensus       359 p  359 (359)
T 1x19_A          359 P  359 (359)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.68  E-value=1e-15  Score=128.20  Aligned_cols=150  Identities=21%  Similarity=0.286  Sum_probs=113.8

Q ss_pred             HHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420           6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ   85 (241)
Q Consensus         6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (241)
                      -..|+..+..|+.+......... ...+.+....   ++.+|||+|||+|..+             ..+..         
T Consensus        14 ~~~~~~~~~~y~~~~~~~~~~~~-~~~~~l~~~~---~~~~vLDiG~G~G~~~-------------~~l~~---------   67 (219)
T 1vlm_A           14 WHIFERFVNEYERWFLVHRFAYL-SELQAVKCLL---PEGRGVEIGVGTGRFA-------------VPLKI---------   67 (219)
T ss_dssp             THHHHHTHHHHHHHHHHTHHHHH-HHHHHHHHHC---CSSCEEEETCTTSTTH-------------HHHTC---------
T ss_pred             eeecchhHHHHHHHHHhcchhHH-HHHHHHHHhC---CCCcEEEeCCCCCHHH-------------HHHHH---------
Confidence            35677777778775332211111 1122333332   3779999999999988             33322         


Q ss_pred             CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420          86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE  165 (241)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (241)
                                .    +++|+++.+++.++++                                  ++++..+|+..++.+
T Consensus        68 ----------~----~~vD~s~~~~~~a~~~----------------------------------~~~~~~~d~~~~~~~   99 (219)
T 1vlm_A           68 ----------K----IGVEPSERMAEIARKR----------------------------------GVFVLKGTAENLPLK   99 (219)
T ss_dssp             ----------C----EEEESCHHHHHHHHHT----------------------------------TCEEEECBTTBCCSC
T ss_pred             ----------H----hccCCCHHHHHHHHhc----------------------------------CCEEEEcccccCCCC
Confidence                      1    8999999999988754                                  267888898888877


Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec--------------------------CHHHHHHHHHHCC
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF--------------------------SHEEFKSMIESAG  219 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~--------------------------~~~~~~~~l~~~G  219 (241)
                      .++||+|++..++++++++..+++++.++|+|||++++.+.                          +.+++.++++++|
T Consensus       100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G  179 (219)
T 1vlm_A          100 DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAG  179 (219)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTT
T ss_pred             CCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCC
Confidence            78999999999999999999999999999999999998753                          2388999999999


Q ss_pred             CceEEEEEec
Q psy1420         220 FQYVTYENLT  229 (241)
Q Consensus       220 f~~~~~~~~~  229 (241)
                      |++++.....
T Consensus       180 f~~~~~~~~~  189 (219)
T 1vlm_A          180 FEEFKVVQTL  189 (219)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEEeccc
Confidence            9998887664

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.68  E-value=1.8e-16  Score=134.42  Aligned_cols=131  Identities=17%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      .+.+...+. .+++.+|||+|||+|.++             ..+..                   ...+++++|+|+.++
T Consensus        29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~   76 (240)
T 3dli_A           29 KARLRRYIPYFKGCRRVLDIGCGRGEFL-------------ELCKE-------------------EGIESIGVDINEDMI   76 (240)
T ss_dssp             HHHHGGGGGGTTTCSCEEEETCTTTHHH-------------HHHHH-------------------HTCCEEEECSCHHHH
T ss_pred             HHHHHHHHhhhcCCCeEEEEeCCCCHHH-------------HHHHh-------------------CCCcEEEEECCHHHH
Confidence            334444433 356789999999999988             44433                   245799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccH--HH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRI--DK  186 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~--~~  186 (241)
                      +.++++                                   +++...|+...  ++++++||+|++..++++++++  ..
T Consensus        77 ~~a~~~-----------------------------------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~  121 (240)
T 3dli_A           77 KFCEGK-----------------------------------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFE  121 (240)
T ss_dssp             HHHHTT-----------------------------------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHH
T ss_pred             HHHHhh-----------------------------------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHH
Confidence            887643                                   45677777664  6677899999999999999854  99


Q ss_pred             HHHHHHHhccCCcEEEEEecCH---------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFSH---------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~~---------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++++.++|||||++++.....                     +++.++++++||++++.....
T Consensus       122 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          122 LLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             HHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             HHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence            9999999999999999876432                     789999999999998888764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.67  E-value=2.5e-16  Score=130.55  Aligned_cols=134  Identities=21%  Similarity=0.275  Sum_probs=102.3

Q ss_pred             HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420           8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK   87 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (241)
                      +|+.++..|+.+...............++..+.. ++.+|||+|||+|..+             ..+ .           
T Consensus         2 ~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~-------------~~l-~-----------   55 (211)
T 2gs9_A            2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWL-------------RRL-P-----------   55 (211)
T ss_dssp             TTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCC-CCSEEEEETCTTCHHH-------------HHC-C-----------
T ss_pred             chhhHHHHHHHHhcccchhhhHHHHHHHHHHhcC-CCCeEEEECCCCCHhH-------------HhC-C-----------
Confidence            5888899998864332221111222333344333 7789999999999887             222 1           


Q ss_pred             cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420          88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD  167 (241)
Q Consensus        88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (241)
                               ..+++++|+++.+++.++++..                                ++.+..+|+..++.+++
T Consensus        56 ---------~~~v~~vD~s~~~~~~a~~~~~--------------------------------~~~~~~~d~~~~~~~~~   94 (211)
T 2gs9_A           56 ---------YPQKVGVEPSEAMLAVGRRRAP--------------------------------EATWVRAWGEALPFPGE   94 (211)
T ss_dssp             ---------CSEEEEECCCHHHHHHHHHHCT--------------------------------TSEEECCCTTSCCSCSS
T ss_pred             ---------CCeEEEEeCCHHHHHHHHHhCC--------------------------------CcEEEEcccccCCCCCC
Confidence                     2268999999999999887643                                47788999998888778


Q ss_pred             ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      +||+|++..++++++++.++++++.++|||||++++.+...
T Consensus        95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           95 SFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             CEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             cEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99999999999999999999999999999999999986443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.67  E-value=1.5e-15  Score=129.65  Aligned_cols=162  Identities=14%  Similarity=0.155  Sum_probs=110.4

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccC-CCceeecCChHhHHHHHHHHh
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIR-QFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ...++.+|||+|||+|..+             ..++.                   .. ..++++|+|+.+++.++++..
T Consensus        53 ~~~~~~~vLDlGcG~G~~~-------------~~l~~-------------------~~~~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQ-------------LLSAC-------------------ESFTEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGG-------------GTTGG-------------------GTEEEEEEEESCHHHHHHHHHHHT
T ss_pred             cccCCCEEEEECCCccHHH-------------HHHhh-------------------cccCeEEEecCCHHHHHHHHHHHh
Confidence            4467789999999999988             33332                   22 379999999999999988876


Q ss_pred             cCCCccccccccceecceeeeeeccccCCC----------CCCe-eEEecccCCCCC-CC---CceeEEeeeehhh----
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIP----------NPRL-RFLEANAEELPI-ES---DSYSAYTIAFGIR----  179 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~d~~~~~~-~~---~~~D~V~~~~~l~----  179 (241)
                      ..+.   .+.|.....-.   ..  ..+..          ..++ .+..+|+...+. +.   ++||+|++..+++    
T Consensus       101 ~~~~---~~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~  172 (265)
T 2i62_A          101 KEPG---AFDWSPVVTYV---CD--LEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP  172 (265)
T ss_dssp             TCTT---CCCCHHHHHHH---HH--HTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS
T ss_pred             cCCc---cccchhhhhhh---hc--ccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC
Confidence            1100   00000000000   00  00000          0126 788888887532 44   7899999999999    


Q ss_pred             ccccHHHHHHHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCceEEEEEecC---------ce
Q psy1420         180 NVTRIDKALSEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQYVTYENLTF---------GV  232 (241)
Q Consensus       180 ~~~~~~~~l~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~~~~~~~~~~---------~~  232 (241)
                      +.+++..+++++.++|||||++++.+.                  +.+++.++++++||+++++.....         ..
T Consensus       173 ~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~  252 (265)
T 2i62_A          173 DLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEG  252 (265)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCC
T ss_pred             ChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccce
Confidence            667889999999999999999998652                  236999999999999998887641         13


Q ss_pred             eEEEeeecC
Q psy1420         233 VAIHSGFKL  241 (241)
Q Consensus       233 ~~~~~~~~~  241 (241)
                      ..+++++|+
T Consensus       253 ~~~~~a~K~  261 (265)
T 2i62_A          253 LFSLVGRKP  261 (265)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEeccc
Confidence            445667764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.66  E-value=3.9e-16  Score=129.91  Aligned_cols=131  Identities=11%  Similarity=0.137  Sum_probs=106.1

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+. .++.+|||+|||+|..+             ..+..                   ....++++|+++.+++.
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~~~~~D~~~~~~~~   69 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALG-------------AAIKE-------------------NGTRVSGIEAFPEAAEQ   69 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHH-------------HHHHT-------------------TTCEEEEEESSHHHHHH
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHH-------------HHHHh-------------------cCCeEEEEeCCHHHHHH
Confidence            44555555 67789999999999988             44433                   23579999999999988


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC--CCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE--LPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      ++++..                                  ++...|+..  .+.++++||+|++..++++++++..++++
T Consensus        70 ~~~~~~----------------------------------~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~  115 (230)
T 3cc8_A           70 AKEKLD----------------------------------HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEK  115 (230)
T ss_dssp             HHTTSS----------------------------------EEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHH
T ss_pred             HHHhCC----------------------------------cEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHH
Confidence            875432                                  467778765  45666799999999999999999999999


Q ss_pred             HHHhccCCcEEEEEec--------------------------------CHHHHHHHHHHCCCceEEEEEecC
Q psy1420         191 AYRVLKPGGRFLCLEF--------------------------------SHEEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~--------------------------------~~~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      +.++|+|||++++...                                +.+++.++++++||++++.....+
T Consensus       116 ~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  187 (230)
T 3cc8_A          116 VKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYV  187 (230)
T ss_dssp             TGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEeccc
Confidence            9999999999998652                                238999999999999998887654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.66  E-value=2e-15  Score=131.65  Aligned_cols=151  Identities=17%  Similarity=0.238  Sum_probs=101.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+              .++.       .          .....++++|+|+.|++.+++++...+
T Consensus        70 ~~~~~vLDiGcG~G~~~--------------~l~~-------~----------~~~~~v~gvD~s~~~l~~a~~~~~~~~  118 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQ--------------LLSA-------C----------SHFEDITMTDFLEVNRQELGRWLQEEP  118 (289)
T ss_dssp             SCCSEEEEETCTTCCGG--------------GTTG-------G----------GGCSEEEEECSCHHHHHHHHHHHTTCT
T ss_pred             CCCCeEEEECCCcChHH--------------HHhh-------c----------cCCCeEEEeCCCHHHHHHHHHHHhhCc
Confidence            36789999999999954              1111       0          024589999999999999988765211


Q ss_pred             Cccccccccceecceeeeeecccc---------CCCCCCeeEEecccCC-CCC-----CCCceeEEeeeehhhc----cc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKI---------DIPNPRLRFLEANAEE-LPI-----ESDSYSAYTIAFGIRN----VT  182 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~-~~~-----~~~~~D~V~~~~~l~~----~~  182 (241)
                      .   .+.|...   +.++......         .+....++++.+|+.. +|+     ++++||+|++++++++    ++
T Consensus       119 ~---~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~  192 (289)
T 2g72_A          119 G---AFNWSMY---SQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA  192 (289)
T ss_dssp             T---CCCCHHH---HHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH
T ss_pred             c---cccchhh---hhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHH
Confidence            0   0000000   0000000000         0000014566778776 443     3457999999999999    77


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEe------------------cCHHHHHHHHHHCCCceEEEEEec
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLE------------------FSHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~------------------~~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++..+|++++++|||||+|++..                  ++.+++.++++++||+++++....
T Consensus       193 ~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          193 SFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence            88999999999999999999863                  234899999999999998888765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.66  E-value=1.2e-16  Score=133.27  Aligned_cols=145  Identities=7%  Similarity=0.040  Sum_probs=103.2

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      +.+...++.+|||+|||+|..+             ..++.                   ....++|+|+|+.|++.++++
T Consensus        16 ~~l~~~~~~~vLD~GCG~G~~~-------------~~la~-------------------~g~~V~gvD~S~~~l~~a~~~   63 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGKSQDM-------------SWLSG-------------------QGYHVVGAELSEAAVERYFTE   63 (203)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHH-------------HHHHH-------------------HCCEEEEEEECHHHHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCCCcHhH-------------HHHHH-------------------CCCeEEEEeCCHHHHHHHHHH
Confidence            4445567889999999999988             44443                   355899999999999999887


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTR--IDKALSEAYR  193 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~--~~~~l~~~~~  193 (241)
                      ....+...             ..-..+...  ..++++.++|+..++.+. ++||+|++..++++++.  ...+++++++
T Consensus        64 ~~~~~~~~-------------~~~~~~~~~--~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r  128 (203)
T 1pjz_A           64 RGEQPHIT-------------SQGDFKVYA--APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEA  128 (203)
T ss_dssp             HCSCSEEE-------------EETTEEEEE--CSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             ccCCcccc-------------ccccccccc--CCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHH
Confidence            64100000             000000000  136899999999988654 68999999999988764  4578999999


Q ss_pred             hccCCcEEEEE--ec------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420         194 VLKPGGRFLCL--EF------------SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       194 ~LkpgG~l~i~--~~------------~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +|||||++++.  ++            +.+++.+++++ ||+++..+...
T Consensus       129 ~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~  177 (203)
T 1pjz_A          129 LMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQD  177 (203)
T ss_dssp             HSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred             HcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence            99999984443  22            23888999988 99987776553

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.66  E-value=5.8e-16  Score=129.23  Aligned_cols=139  Identities=12%  Similarity=0.190  Sum_probs=106.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.+...++.+|||+|||+|.++             ..++.        .         .....++++|+++.+++
T Consensus        18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~--------~---------~~~~~v~gvD~s~~~~~   67 (217)
T 3jwh_A           18 MNGVVAALKQSNARRVIDLGCGQGNLL-------------KILLK--------D---------SFFEQITGVDVSYRSLE   67 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEETCTTCHHH-------------HHHHH--------C---------TTCSEEEEEESCHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCHHH-------------HHHHh--------h---------CCCCEEEEEECCHHHHH
Confidence            344555555567789999999999988             33332        0         02358999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DK  186 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~  186 (241)
                      .+++++.                         ..+++.   .++++..+|+...+.+.++||+|++..++++++++  ..
T Consensus        68 ~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~  122 (217)
T 3jwh_A           68 IAQERLD-------------------------RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGA  122 (217)
T ss_dssp             HHHHHHT-------------------------TCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHH
T ss_pred             HHHHHHH-------------------------HhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHH
Confidence            9999876                         333320   26899999998777666799999999999999866  89


Q ss_pred             HHHHHHHhccCCcEEEEEec------------------------CHHHHH----HHHHHCCCceEEE
Q psy1420         187 ALSEAYRVLKPGGRFLCLEF------------------------SHEEFK----SMIESAGFQYVTY  225 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~------------------------~~~~~~----~~l~~~Gf~~~~~  225 (241)
                      +++++.++|||||.+++...                        +.+++.    ++++++||+++..
T Consensus       123 ~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~  189 (217)
T 3jwh_A          123 FERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             HHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEE
Confidence            99999999999998776542                        225555    8999999986543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.66  E-value=1.5e-15  Score=132.48  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=107.5

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|.++             ..++.    ..   +         ...+++++|+++.+++.+++++. 
T Consensus        19 ~~~~~~~vLDiGcG~G~~~-------------~~l~~----~~---~---------~~~~v~gvD~s~~~~~~a~~~~~-   68 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLG-------------LVLMP----LL---P---------EGSKYTGIDSGETLLAEARELFR-   68 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHH-------------HHHTT----TS---C---------TTCEEEEEESCHHHHHHHHHHHH-
T ss_pred             ccCCCCeEEEecCCCCHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH-
Confidence            4567889999999999988             44433    10   0         24689999999999999999877 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                              ..+   .++++..+|+.+.+. +++||+|++..++++++++..++++++++|||||
T Consensus        69 ------------------------~~~---~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG  120 (284)
T 3gu3_A           69 ------------------------LLP---YDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG  120 (284)
T ss_dssp             ------------------------SSS---SEEEEEESCTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE
T ss_pred             ------------------------hcC---CceEEEEcchhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCC
Confidence                                    222   268999999998877 4689999999999999999999999999999999


Q ss_pred             EEEEEecCH-----------------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420         200 RFLCLEFSH-----------------------------------------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       200 ~l~i~~~~~-----------------------------------------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ++++.+...                                         .++.++++++||..++...
T Consensus       121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          121 KIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRV  189 (284)
T ss_dssp             EEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEEE
Confidence            999988761                                         5678899999999887743

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.66  E-value=1.9e-15  Score=134.61  Aligned_cols=144  Identities=13%  Similarity=0.155  Sum_probs=114.6

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      .+.++..+..+|||+|||+|..+             ..++.    .   .          +..+++++|+ +.+++.+++
T Consensus       162 ~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~a~~  210 (332)
T 3i53_A          162 AAKYDWAALGHVVDVGGGSGGLL-------------SALLT----A---H----------EDLSGTVLDL-QGPASAAHR  210 (332)
T ss_dssp             GGSSCCGGGSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHHHHHH
T ss_pred             HHhCCCCCCCEEEEeCCChhHHH-------------HHHHH----H---C----------CCCeEEEecC-HHHHHHHHH
Confidence            33444456789999999999888             44433    0   1          2457899999 999999998


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYR  193 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~  193 (241)
                      ++.                         +.++. +++++...|+. .+.+. +||+|++..++|++++.  .++|+++++
T Consensus       211 ~~~-------------------------~~~~~-~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~  262 (332)
T 3i53_A          211 RFL-------------------------DTGLS-GRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAE  262 (332)
T ss_dssp             HHH-------------------------HTTCT-TTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             hhh-------------------------hcCcC-cCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHH
Confidence            877                         55554 57999999997 44444 79999999999999886  799999999


Q ss_pred             hccCCcEEEEEecC------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         194 VLKPGGRFLCLEFS------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       194 ~LkpgG~l~i~~~~------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      .|+|||++++.+..                        .+++.++++++||+.+++.....  ..++.+++
T Consensus       263 ~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~--~~vie~r~  331 (332)
T 3i53_A          263 AAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY--VSIVEMTA  331 (332)
T ss_dssp             HHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS--SEEEEEEE
T ss_pred             hcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC--cEEEEEee
Confidence            99999999997642                        28899999999999999887754  66666665

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.66  E-value=1.3e-15  Score=135.13  Aligned_cols=150  Identities=15%  Similarity=0.183  Sum_probs=116.9

Q ss_pred             HHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          33 DIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        33 ~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+++.+..  .++.+|||+|||+|..+             ..++.    .   .          +..+++++|++ .++
T Consensus       153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~~-~~~  201 (335)
T 2r3s_A          153 QLIAQLVNENKIEPLKVLDISASHGLFG-------------IAVAQ----H---N----------PNAEIFGVDWA-SVL  201 (335)
T ss_dssp             HHHHHHHTC--CCCSEEEEETCTTCHHH-------------HHHHH----H---C----------TTCEEEEEECH-HHH
T ss_pred             HHHHHhcccccCCCCEEEEECCCcCHHH-------------HHHHH----H---C----------CCCeEEEEecH-HHH
Confidence            345555565  67889999999999988             44433    1   0          24589999999 999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKAL  188 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l  188 (241)
                      +.+++++.                         +.++. +++++..+|+...+.+. .||+|++..+++++++.  .+++
T Consensus       202 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~-~~D~v~~~~~l~~~~~~~~~~~l  254 (335)
T 2r3s_A          202 EVAKENAR-------------------------IQGVA-SRYHTIAGSAFEVDYGN-DYDLVLLPNFLHHFDVATCEQLL  254 (335)
T ss_dssp             HHHHHHHH-------------------------HHTCG-GGEEEEESCTTTSCCCS-CEEEEEEESCGGGSCHHHHHHHH
T ss_pred             HHHHHHHH-------------------------hcCCC-cceEEEecccccCCCCC-CCcEEEEcchhccCCHHHHHHHH
Confidence            99998876                         44444 46999999998876654 49999999999999544  7999


Q ss_pred             HHHHHhccCCcEEEEEecC-----------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeee
Q psy1420         189 SEAYRVLKPGGRFLCLEFS-----------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGF  239 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~-----------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~  239 (241)
                      ++++++|+|||++++.+..                             .+++.++++++||+.+++.....+. .++.++
T Consensus       255 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~-~~i~~~  333 (335)
T 2r3s_A          255 RKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQ-QQVIVA  333 (335)
T ss_dssp             HHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSS-SEEEEE
T ss_pred             HHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCc-eeEEEe
Confidence            9999999999999987642                             2789999999999999988775543 555565


Q ss_pred             cC
Q psy1420         240 KL  241 (241)
Q Consensus       240 ~~  241 (241)
                      +|
T Consensus       334 ~~  335 (335)
T 2r3s_A          334 YK  335 (335)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.65  E-value=9.9e-16  Score=131.92  Aligned_cols=143  Identities=13%  Similarity=0.116  Sum_probs=112.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH--
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP--  108 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~--  108 (241)
                      ....+++.+...++.+|||+|||+|..+             ..++...|                ...+++++|+|+.  
T Consensus        31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~~~g----------------~~~~v~gvD~s~~~~   81 (275)
T 3bkx_A           31 HRLAIAEAWQVKPGEKILEIGCGQGDLS-------------AVLADQVG----------------SSGHVTGIDIASPDY   81 (275)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHH-------------HHHHHHHC----------------TTCEEEEECSSCTTC
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEECCcccc
Confidence            3456667777788999999999999988             44444110                2368999999997  


Q ss_pred             ----hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecc---cCCCCCCCCceeEEeeeehhhcc
Q psy1420         109 ----RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEAN---AEELPIESDSYSAYTIAFGIRNV  181 (241)
Q Consensus       109 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~D~V~~~~~l~~~  181 (241)
                          +++.+++++.                         ..++. +++++...|   ...+|+++++||+|++..+++++
T Consensus        82 ~~~~~~~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~  135 (275)
T 3bkx_A           82 GAPLTLGQAWNHLL-------------------------AGPLG-DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYF  135 (275)
T ss_dssp             CSSSCHHHHHHHHH-------------------------TSTTG-GGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGS
T ss_pred             ccHHHHHHHHHHHH-------------------------hcCCC-CceEEEECChhhhccCCCCCCCEEEEEEccchhhC
Confidence                9999998887                         44443 468899988   44556667899999999999999


Q ss_pred             ccHHHHHHHHHHhccCCcEEEEEecC-------------------------------------HHHHHHHHHHCCCceEE
Q psy1420         182 TRIDKALSEAYRVLKPGGRFLCLEFS-------------------------------------HEEFKSMIESAGFQYVT  224 (241)
Q Consensus       182 ~~~~~~l~~~~~~LkpgG~l~i~~~~-------------------------------------~~~~~~~l~~~Gf~~~~  224 (241)
                      +++..+++.+.++++|||++++.++.                                     .+++.++++++||++++
T Consensus       136 ~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~  215 (275)
T 3bkx_A          136 ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTA  215 (275)
T ss_dssp             SCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEE
T ss_pred             CCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEE
Confidence            99998888888888889999986522                                     16889999999999988


Q ss_pred             EEEe
Q psy1420         225 YENL  228 (241)
Q Consensus       225 ~~~~  228 (241)
                      ...+
T Consensus       216 ~~~~  219 (275)
T 3bkx_A          216 GTIV  219 (275)
T ss_dssp             CCCB
T ss_pred             EEEe
Confidence            7765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.65  E-value=4.2e-16  Score=142.85  Aligned_cols=150  Identities=12%  Similarity=0.087  Sum_probs=115.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+++.+...++.+|||+|||+|.++             ..+..                   ....++++|+|+.+
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~-------------~~l~~-------------------~g~~v~gvD~s~~~  141 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIML-------------RTIQE-------------------AGVRHLGFEPSSGV  141 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTH-------------HHHHH-------------------TTCEEEEECCCHHH
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHH-------------HHHHH-------------------cCCcEEEECCCHHH
Confidence            34566677777778889999999999988             44444                   34589999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.++++-.                             +.....+...+...++.++++||+|++..+++|++++..+++
T Consensus       142 ~~~a~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~  192 (416)
T 4e2x_A          142 AAKAREKGI-----------------------------RVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLE  192 (416)
T ss_dssp             HHHHHTTTC-----------------------------CEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHH
T ss_pred             HHHHHHcCC-----------------------------CcceeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHH
Confidence            998875411                             100111223444455555688999999999999999999999


Q ss_pred             HHHHhccCCcEEEEEecC----------------------HHHHHHHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420         190 EAYRVLKPGGRFLCLEFS----------------------HEEFKSMIESAGFQYVTYENLT--FGVVAIHSGFK  240 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~----------------------~~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~  240 (241)
                      +++++|||||++++....                      .+++.++++++||++++.....  .|...++.+++
T Consensus       193 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~~  267 (416)
T 4e2x_A          193 GVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLARQ  267 (416)
T ss_dssp             HHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEEET
T ss_pred             HHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEEeC
Confidence            999999999999987533                      1789999999999999999864  67777666543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.65  E-value=6.7e-16  Score=128.53  Aligned_cols=158  Identities=21%  Similarity=0.244  Sum_probs=112.9

Q ss_pred             hHHHHHhhhhhccccchhhhhhhh---HHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAMSFGI---HRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMG   79 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~~~~~---~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~   79 (241)
                      ...++|+..+..|+..........   .....+.+.+.+. ..++.+|||+|||+|..+             ..+     
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~-------------~~l-----   85 (215)
T 2zfu_A           24 AAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLA-------------SSI-----   85 (215)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHH-------------HHC-----
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHH-------------HHh-----
Confidence            455677777777776543322210   0101122333332 356789999999999987             211     


Q ss_pred             hhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc
Q psy1420          80 QLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA  159 (241)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  159 (241)
                                       ...++++|+++.         .                                 +.+..+|+
T Consensus        86 -----------------~~~v~~~D~s~~---------~---------------------------------~~~~~~d~  106 (215)
T 2zfu_A           86 -----------------RNPVHCFDLASL---------D---------------------------------PRVTVCDM  106 (215)
T ss_dssp             -----------------CSCEEEEESSCS---------S---------------------------------TTEEESCT
T ss_pred             -----------------hccEEEEeCCCC---------C---------------------------------ceEEEecc
Confidence                             246899999876         2                                 34678888


Q ss_pred             CCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420         160 EELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYENLTFGVVA  234 (241)
Q Consensus       160 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~~~~~~~~  234 (241)
                      ..++.+.++||+|++..++| ..++..+++++.++|+|||++++.++..     +++.++++++||+++.... ..+...
T Consensus       107 ~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~  184 (215)
T 2zfu_A          107 AQVPLEDESVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL-TNSHFF  184 (215)
T ss_dssp             TSCSCCTTCEEEEEEESCCC-SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC-CSTTCE
T ss_pred             ccCCCCCCCEeEEEEehhcc-ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec-CCCeEE
Confidence            88887778999999999997 4899999999999999999999987544     8999999999999887554 344445


Q ss_pred             EEeeec
Q psy1420         235 IHSGFK  240 (241)
Q Consensus       235 ~~~~~~  240 (241)
                      +++++|
T Consensus       185 ~~~~~k  190 (215)
T 2zfu_A          185 LFDFQK  190 (215)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555555

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.65  E-value=1.8e-15  Score=135.51  Aligned_cols=148  Identities=18%  Similarity=0.227  Sum_probs=117.3

Q ss_pred             HHHhhcCCCC-CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          34 IFIDRLGPTH-DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        34 ~~~~~l~~~~-~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      .+++.++..+ +.+|||+|||+|.++             ..++.    .   .          +..+++++|+ +.+++.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~  217 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYL-------------AQVLR----R---H----------PQLTGQIWDL-PTTRDA  217 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHH-------------HHHHH----H---C----------TTCEEEEEEC-GGGHHH
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHH-------------HHHHH----h---C----------CCCeEEEEEC-HHHHHH
Confidence            4555555555 789999999999988             44443    1   0          2467899999 889999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccccH--HHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVTRI--DKALS  189 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~~~--~~~l~  189 (241)
                      ++++..                         +.++. +++++..+|+...+. ..++||+|++..++|++++.  .++++
T Consensus       218 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~  271 (352)
T 3mcz_A          218 ARKTIH-------------------------AHDLG-GRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIG  271 (352)
T ss_dssp             HHHHHH-------------------------HTTCG-GGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             HHHHHH-------------------------hcCCC-CceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHH
Confidence            998877                         44444 479999999988751 34569999999999999876  89999


Q ss_pred             HHHHhccCCcEEEEEecC-----------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         190 EAYRVLKPGGRFLCLEFS-----------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~-----------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      ++++.|||||++++.+..                             .++++++++++||++++..   .|...+++++|
T Consensus       272 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~---~g~~~l~~a~k  348 (352)
T 3mcz_A          272 HAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS---IGRYTLLIGQR  348 (352)
T ss_dssp             HHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE---ETTEEEEEEEC
T ss_pred             HHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec---cCceEEEEEec
Confidence            999999999999997632                             1789999999999998843   46688889988


Q ss_pred             C
Q psy1420         241 L  241 (241)
Q Consensus       241 ~  241 (241)
                      |
T Consensus       349 p  349 (352)
T 3mcz_A          349 S  349 (352)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.64  E-value=2.8e-15  Score=133.28  Aligned_cols=148  Identities=14%  Similarity=0.180  Sum_probs=115.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+.+.++..+ .+|||+|||+|..+             ..++.    .   .          +..+++++|+ +.+++
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~  204 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELT-------------KAILQ----A---E----------PSARGVMLDR-EGSLG  204 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHH-------------HHHHH----H---C----------TTCEEEEEEC-TTCTH
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHH-------------HHHHH----H---C----------CCCEEEEeCc-HHHHH
Confidence            345555556556 89999999999988             44433    0   0          2457999999 99999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~  189 (241)
                      .+++++.                         +.++. +++++...|+.+ +.+ .+||+|++..++|++++..  ++++
T Consensus       205 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~  256 (334)
T 2ip2_A          205 VARDNLS-------------------------SLLAG-ERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLG  256 (334)
T ss_dssp             HHHHHTH-------------------------HHHHT-TSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHH
T ss_pred             HHHHHHh-------------------------hcCCC-CcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHH
Confidence            9988765                         33333 478999999887 444 6799999999999988776  9999


Q ss_pred             HHHHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         190 EAYRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      ++++.|+|||++++.+..                           .+++.++++++||+.+++.... +...++.++|
T Consensus       257 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~  333 (334)
T 2ip2_A          257 NCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLP-METRMIVAAR  333 (334)
T ss_dssp             HHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEET-TTEEEEEEEE
T ss_pred             HHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECC-CCCEEEEEEe
Confidence            999999999999998632                           1789999999999999988764 4466777765

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.64  E-value=1.1e-15  Score=127.47  Aligned_cols=138  Identities=13%  Similarity=0.173  Sum_probs=104.9

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+...++.+|||+|||+|.++             ..+..        .         ....+++++|+++.+++.
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~--------~---------~~~~~v~gvD~s~~~~~~   68 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLL-------------SLLLK--------D---------KSFEQITGVDVSYSVLER   68 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHH-------------HHHHT--------S---------TTCCEEEEEESCHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHH-------------HHHHh--------c---------CCCCEEEEEECCHHHHHH
Confidence            44444444467789999999999988             33333        0         023689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKA  187 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~  187 (241)
                      +++++.                         ..+++.   .++++..+|+...+.+.++||+|++..++++++++  .++
T Consensus        69 a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~  123 (219)
T 3jwg_A           69 AKDRLK-------------------------IDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAF  123 (219)
T ss_dssp             HHHHHT-------------------------GGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHH
T ss_pred             HHHHHH-------------------------hhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHH
Confidence            998876                         333320   26899999998877767899999999999999866  799


Q ss_pred             HHHHHHhccCCcEEEEEec------------------------CHHHHH----HHHHHCCCceEEE
Q psy1420         188 LSEAYRVLKPGGRFLCLEF------------------------SHEEFK----SMIESAGFQYVTY  225 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~------------------------~~~~~~----~~l~~~Gf~~~~~  225 (241)
                      ++++.++|||||.++....                        +.+++.    ++++++||++...
T Consensus       124 l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          124 EKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEE
Confidence            9999999999997766432                        225565    8899999976544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.64  E-value=2.7e-15  Score=124.76  Aligned_cols=116  Identities=9%  Similarity=0.165  Sum_probs=95.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+...+...++.+|||+|||+|..+             ..++.                   ....++++|+++.++
T Consensus        39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~   86 (216)
T 3ofk_A           39 HTQLLRLSLSSGAVSNGLEIGCAAGAFT-------------EKLAP-------------------HCKRLTVIDVMPRAI   86 (216)
T ss_dssp             HHHHHHHHTTTSSEEEEEEECCTTSHHH-------------HHHGG-------------------GEEEEEEEESCHHHH
T ss_pred             HHHHHHHHcccCCCCcEEEEcCCCCHHH-------------HHHHH-------------------cCCEEEEEECCHHHH
Confidence            3444555666778889999999999988             44444                   235799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH---HHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI---DKA  187 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~---~~~  187 (241)
                      +.++++..                         ..    +++++.++|+...+ +.++||+|++..++++++++   .++
T Consensus        87 ~~a~~~~~-------------------------~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~  136 (216)
T 3ofk_A           87 GRACQRTK-------------------------RW----SHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTA  136 (216)
T ss_dssp             HHHHHHTT-------------------------TC----SSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHH
T ss_pred             HHHHHhcc-------------------------cC----CCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHH
Confidence            99998876                         21    36899999999887 56899999999999999987   577


Q ss_pred             HHHHHHhccCCcEEEEEecCH
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ++++.++|||||++++.+...
T Consensus       137 l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          137 IDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             HHHHHHTEEEEEEEEEEEECH
T ss_pred             HHHHHHHcCCCCEEEEEecCC
Confidence            999999999999999976544

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=1.8e-15  Score=122.63  Aligned_cols=123  Identities=14%  Similarity=0.105  Sum_probs=101.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..+..                   ....++++|+++.+++.++++..   
T Consensus        45 ~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~~D~~~~~~~~a~~~~~---   89 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIG-------------GYLSK-------------------QGHDVLGTDLDPILIDYAKQDFP---   89 (195)
T ss_dssp             CTTCEEEEETCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHCT---
T ss_pred             cCCCeEEEECCCCCHHH-------------HHHHH-------------------CCCcEEEEcCCHHHHHHHHHhCC---
Confidence            57789999999999988             44443                   24579999999999999987654   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee-ehhhcc--ccHHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNV--TRIDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~-~~l~~~--~~~~~~l~~~~~~Lkpg  198 (241)
                                                   ++.+...|+...+.+.++||+|++. ..++++  ++...+++++.++|+||
T Consensus        90 -----------------------------~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  140 (195)
T 3cgg_A           90 -----------------------------EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGAD  140 (195)
T ss_dssp             -----------------------------TSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             -----------------------------CCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCC
Confidence                                         4778899998887777899999998 677776  44589999999999999


Q ss_pred             cEEEEEec-----CHHHHHHHHHHCCCceEEEEEe
Q psy1420         199 GRFLCLEF-----SHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       199 G~l~i~~~-----~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |++++...     +.+++.++++++||.+++....
T Consensus       141 G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          141 GRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             EEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             CEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence            99998653     3489999999999998877544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.64  E-value=1.4e-15  Score=130.62  Aligned_cols=141  Identities=26%  Similarity=0.367  Sum_probs=106.4

Q ss_pred             CcchHHHHHhhhhhccccchhhhhh-hhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhh
Q psy1420           1 MKLPMYEVFENVAKSYDTMNDAMSF-GIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMG   79 (241)
Q Consensus         1 ~~~~~~~~f~~~~~~yd~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~   79 (241)
                      |+......|+.+++.|+.+...... .......+.+.+.+.  ++.+|||+|||+|..+             ..+..   
T Consensus        13 ~~~~~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~-------------~~l~~---   74 (260)
T 2avn_A           13 MKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWS-------------LFLQE---   74 (260)
T ss_dssp             EECCHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHH-------------HHHHT---
T ss_pred             hhhhhcchhhHHHHHHHHhccccchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHH-------------HHHHH---
Confidence            3567788999999999987532211 112223344444443  6779999999999988             44443   


Q ss_pred             hhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc
Q psy1420          80 QLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA  159 (241)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  159 (241)
                                      ....++++|+++.+++.++++..                               .  .+..+|+
T Consensus        75 ----------------~~~~v~gvD~s~~~l~~a~~~~~-------------------------------~--~~~~~d~  105 (260)
T 2avn_A           75 ----------------RGFEVVLVDPSKEMLEVAREKGV-------------------------------K--NVVEAKA  105 (260)
T ss_dssp             ----------------TTCEEEEEESCHHHHHHHHHHTC-------------------------------S--CEEECCT
T ss_pred             ----------------cCCeEEEEeCCHHHHHHHHhhcC-------------------------------C--CEEECcH
Confidence                            24579999999999999987653                               1  2678888


Q ss_pred             CCCCCCCCceeEEeeeehhhcc-ccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         160 EELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       160 ~~~~~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ..++.++++||+|++..++.++ +++..+++++.++|||||++++...+.
T Consensus       106 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          106 EDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             TSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             HHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            8888777899999998766554 789999999999999999999987765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.64  E-value=4.4e-15  Score=130.12  Aligned_cols=139  Identities=15%  Similarity=0.301  Sum_probs=108.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+++.+...++ +|||+|||+|..+             ..++.                   ....++++|+++.+++
T Consensus        72 ~~~~~~~~~~~~~-~vLDlGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~  118 (299)
T 3g2m_A           72 AREFATRTGPVSG-PVLELAAGMGRLT-------------FPFLD-------------------LGWEVTALELSTSVLA  118 (299)
T ss_dssp             HHHHHHHHCCCCS-CEEEETCTTTTTH-------------HHHHT-------------------TTCCEEEEESCHHHHH
T ss_pred             HHHHHHhhCCCCC-cEEEEeccCCHHH-------------HHHHH-------------------cCCeEEEEECCHHHHH
Confidence            4455555554444 9999999999998             44444                   3467999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCC-CCCeeEEecccCCCCCCCCceeEEeee-ehhhccc--cHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP-NPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVT--RIDKA  187 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~V~~~-~~l~~~~--~~~~~  187 (241)
                      .+++++.                         ..+.. ..+++++++|+..++. .++||+|++. .++++.+  +...+
T Consensus       119 ~a~~~~~-------------------------~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~  172 (299)
T 3g2m_A          119 AFRKRLA-------------------------EAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGL  172 (299)
T ss_dssp             HHHHHHH-------------------------TSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHH
T ss_pred             HHHHHHh-------------------------hcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHH
Confidence            9999887                         32210 0258999999999887 6789999876 4455554  35899


Q ss_pred             HHHHHHhccCCcEEEEEec-------------------------------------------------------------
Q psy1420         188 LSEAYRVLKPGGRFLCLEF-------------------------------------------------------------  206 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~-------------------------------------------------------------  206 (241)
                      |+++.++|||||+|++..+                                                             
T Consensus       173 l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (299)
T 3g2m_A          173 YASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLL  252 (299)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEE
T ss_pred             HHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEe
Confidence            9999999999999988541                                                             


Q ss_pred             CHHHHHHHHHHCCCceEEEEEec
Q psy1420         207 SHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       207 ~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +.+++.++++++||++++...+.
T Consensus       253 t~~el~~ll~~aGF~v~~~~~~~  275 (299)
T 3g2m_A          253 APDQVVRELVRSGFDVIAQTPFA  275 (299)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             CHHHHHHHHHHCCCEEEEEEecC
Confidence            34789999999999999999885

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.63  E-value=4.9e-15  Score=133.54  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=115.8

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+...++.+|||+|||+|..+             ..++.    .             .+...++++|+ +.+++.
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~-------------~~~~~~~~~D~-~~~~~~  220 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGML-------------AAIAL----R-------------APHLRGTLVEL-AGPAER  220 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHH-------------HHHHH----H-------------CTTCEEEEEEC-HHHHHH
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHH-------------HHHHH----H-------------CCCCEEEEEeC-HHHHHH
Confidence            44556666677889999999999988             44433    1             02457999999 999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~  190 (241)
                      +++++.                         +.++. +++++..+|+.+ +.+. .||+|++..++|++++..  +++++
T Consensus       221 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~  272 (374)
T 1qzz_A          221 ARRRFA-------------------------DAGLA-DRVTVAEGDFFK-PLPV-TADVVLLSFVLLNWSDEDALTILRG  272 (374)
T ss_dssp             HHHHHH-------------------------HTTCT-TTEEEEECCTTS-CCSC-CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             HHHHHH-------------------------hcCCC-CceEEEeCCCCC-cCCC-CCCEEEEeccccCCCHHHHHHHHHH
Confidence            998887                         44544 479999999875 3333 499999999999998875  89999


Q ss_pred             HHHhccCCcEEEEEec--C---------------------------HHHHHHHHHHCCCceEEEEEecCce----eEEEe
Q psy1420         191 AYRVLKPGGRFLCLEF--S---------------------------HEEFKSMIESAGFQYVTYENLTFGV----VAIHS  237 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~--~---------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~----~~~~~  237 (241)
                      ++++|||||++++.+.  .                           .+++.++++++||+++++.......    ..++.
T Consensus       273 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~  352 (374)
T 1qzz_A          273 CVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILE  352 (374)
T ss_dssp             HHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEE
T ss_pred             HHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEE
Confidence            9999999999998876  2                           2788999999999999988775332    15556


Q ss_pred             eec
Q psy1420         238 GFK  240 (241)
Q Consensus       238 ~~~  240 (241)
                      ++|
T Consensus       353 ~~~  355 (374)
T 1qzz_A          353 FTA  355 (374)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.63  E-value=1.1e-14  Score=120.40  Aligned_cols=133  Identities=15%  Similarity=0.153  Sum_probs=106.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      +..+..++..+...++.+|||+|||+|..+             ..++.    .             .+..+++++|+++.
T Consensus        26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~-------------~~la~----~-------------~~~~~v~~vD~s~~   75 (204)
T 3e05_A           26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVS-------------IEASN----L-------------MPNGRIFALERNPQ   75 (204)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEETCTTCHHH-------------HHHHH----H-------------CTTSEEEEEECCHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCCCHHH-------------HHHHH----H-------------CCCCEEEEEeCCHH
Confidence            344566777888888999999999999988             44443    1             02468999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      +++.+++++.                         ..++.  +++++.+|+.+......+||+|++...++   ++..++
T Consensus        76 ~~~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~D~i~~~~~~~---~~~~~l  125 (204)
T 3e05_A           76 YLGFIRDNLK-------------------------KFVAR--NVTLVEAFAPEGLDDLPDPDRVFIGGSGG---MLEEII  125 (204)
T ss_dssp             HHHHHHHHHH-------------------------HHTCT--TEEEEECCTTTTCTTSCCCSEEEESCCTT---CHHHHH
T ss_pred             HHHHHHHHHH-------------------------HhCCC--cEEEEeCChhhhhhcCCCCCEEEECCCCc---CHHHHH
Confidence            9999999887                         55543  68999999866543346799999887665   788999


Q ss_pred             HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCc
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQ  221 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~  221 (241)
                      +++.++|||||++++.....   +++.++++++||.
T Consensus       126 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          126 DAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             HHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCc
Confidence            99999999999999987765   7788899999993

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.63  E-value=2.4e-15  Score=130.76  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=93.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|.++             ..++.                   ....++++|+|+.+
T Consensus        44 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~   91 (293)
T 3thr_A           44 EYKAWLLGLLRQHGCHRVLDVACGTGVDS-------------IMLVE-------------------EGFSVTSVDASDKM   91 (293)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHH
T ss_pred             HHHHHHHHHhcccCCCEEEEecCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHH
Confidence            34455666655567789999999999988             54444                   34589999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCC--CCCeeEEecccCCCC---CCCCceeEEeee-ehhhcccc
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP--NPRLRFLEANAEELP---IESDSYSAYTIA-FGIRNVTR  183 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~---~~~~~~D~V~~~-~~l~~~~~  183 (241)
                      ++.++++..                         ..+..  ..++.+..+|+..++   .+.++||+|++. .+++++++
T Consensus        92 l~~a~~~~~-------------------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~  146 (293)
T 3thr_A           92 LKYALKERW-------------------------NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD  146 (293)
T ss_dssp             HHHHHHHHH-------------------------HTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCC
T ss_pred             HHHHHHhhh-------------------------hcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCc
Confidence            999988763                         11100  025678888888876   667899999998 89999999


Q ss_pred             -------HHHHHHHHHHhccCCcEEEEEe
Q psy1420         184 -------IDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       184 -------~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                             +..++++++++|||||++++..
T Consensus       147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          147 SKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             SSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence                   8999999999999999999764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.62  E-value=3.1e-16  Score=133.85  Aligned_cols=164  Identities=14%  Similarity=0.163  Sum_probs=115.4

Q ss_pred             hHHHHHhhhhhccccchhhhh-------hhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAMS-------FGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIP   76 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~   76 (241)
                      ..+..|+..+..||..+....       ..+.+-+.+.+.+.+. .+|.+|||||||+|..+             ..++.
T Consensus        15 ~~~~~w~~~~~~yd~~~~~l~~~g~~vm~~we~~~m~~~a~~~~-~~G~rVLdiG~G~G~~~-------------~~~~~   80 (236)
T 3orh_A           15 NCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAAS-SKGGRVLEVGFGMAIAA-------------SKVQE   80 (236)
T ss_dssp             BCHHHHTTSCEEECTTSSEEEETTEEEEEGGGHHHHHHHHHHHT-TTCEEEEEECCTTSHHH-------------HHHTT
T ss_pred             hhhhhHhcCcCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhhc-cCCCeEEEECCCccHHH-------------HHHHH
Confidence            456788888888887532211       1122233344444443 57889999999999887             33332


Q ss_pred             hhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEe
Q psy1420          77 VMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE  156 (241)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (241)
                                        ....+++++|+++.+++.++++..                         ..+   .+++++.
T Consensus        81 ------------------~~~~~v~~id~~~~~~~~a~~~~~-------------------------~~~---~~~~~~~  114 (236)
T 3orh_A           81 ------------------APIDEHWIIECNDGVFQRLRDWAP-------------------------RQT---HKVIPLK  114 (236)
T ss_dssp             ------------------SCEEEEEEEECCHHHHHHHHHHGG-------------------------GCS---SEEEEEE
T ss_pred             ------------------hCCcEEEEEeCCHHHHHHHHHHHh-------------------------hCC---CceEEEe
Confidence                              123478999999999999999877                         333   3577888


Q ss_pred             cccCCC--CCCCCceeEEee-----eehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----------------HHHH
Q psy1420         157 ANAEEL--PIESDSYSAYTI-----AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----------------EEFK  212 (241)
Q Consensus       157 ~d~~~~--~~~~~~~D~V~~-----~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------~~~~  212 (241)
                      +++...  +.++++||.|++     ...+++..++..++++++|+|||||+|.+.....                 +.+.
T Consensus       115 ~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (236)
T 3orh_A          115 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQV  194 (236)
T ss_dssp             SCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTH
T ss_pred             ehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHH
Confidence            887654  456778999864     4566778889999999999999999998754211                 5566


Q ss_pred             HHHHHCCCceEEEEE
Q psy1420         213 SMIESAGFQYVTYEN  227 (241)
Q Consensus       213 ~~l~~~Gf~~~~~~~  227 (241)
                      ..|.++||+.+.+..
T Consensus       195 ~~L~eaGF~~~~i~~  209 (236)
T 3orh_A          195 PALLEAGFRRENIRT  209 (236)
T ss_dssp             HHHHHHTCCGGGEEE
T ss_pred             HHHHHcCCeEEEEEE
Confidence            778899998766543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.62  E-value=5e-15  Score=119.02  Aligned_cols=139  Identities=17%  Similarity=0.254  Sum_probs=106.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      +.++..+++.+...++.+|||+|||+|..+             ..++.    .             ....+++++|+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~----~-------------~~~~~v~~vD~~~~   60 (178)
T 3hm2_A           11 QHVRALAISALAPKPHETLWDIGGGSGSIA-------------IEWLR----S-------------TPQTTAVCFEISEE   60 (178)
T ss_dssp             HHHHHHHHHHHCCCTTEEEEEESTTTTHHH-------------HHHHT----T-------------SSSEEEEEECSCHH
T ss_pred             HHHHHHHHHHhcccCCCeEEEeCCCCCHHH-------------HHHHH----H-------------CCCCeEEEEeCCHH
Confidence            445667777778888999999999999988             43333    0             02568999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKA  187 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~  187 (241)
                      +++.+++++.                         ..+++ .++ ++..|... ++...++||+|++...+++    ..+
T Consensus        61 ~~~~a~~~~~-------------------------~~~~~-~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~----~~~  109 (178)
T 3hm2_A           61 RRERILSNAI-------------------------NLGVS-DRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA----PGV  109 (178)
T ss_dssp             HHHHHHHHHH-------------------------TTTCT-TSE-EEECCTTGGGGGCCSCCSEEEECC-TTC----TTH
T ss_pred             HHHHHHHHHH-------------------------HhCCC-CCE-EEecchHhhhhccCCCCCEEEECCcccH----HHH
Confidence            9999999887                         44544 367 77777643 3322278999999988877    678


Q ss_pred             HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++++.++|||||++++.....   ..+.+++++.|+.+..+...
T Consensus       110 l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (178)
T 3hm2_A          110 FAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSFAIS  153 (178)
T ss_dssp             HHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEEEEE
T ss_pred             HHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEEEee
Confidence            999999999999999988766   67788899999877665433

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.62  E-value=1.1e-14  Score=121.48  Aligned_cols=136  Identities=16%  Similarity=0.212  Sum_probs=107.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ..+..++..+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~   89 (204)
T 3njr_A           42 PMRALTLAALAPRRGELLWDIGGGSGSVS-------------VEWCL-------------------AGGRAITIEPRADR   89 (204)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHH-------------HHHHH-------------------cCCEEEEEeCCHHH
Confidence            34455667777888899999999999988             44444                   24679999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.+++++.                         ..+++ ++++++.+|+.+......+||+|++..++    ++. +++
T Consensus        90 ~~~a~~~~~-------------------------~~g~~-~~v~~~~~d~~~~~~~~~~~D~v~~~~~~----~~~-~l~  138 (204)
T 3njr_A           90 IENIQKNID-------------------------TYGLS-PRMRAVQGTAPAALADLPLPEAVFIGGGG----SQA-LYD  138 (204)
T ss_dssp             HHHHHHHHH-------------------------HTTCT-TTEEEEESCTTGGGTTSCCCSEEEECSCC----CHH-HHH
T ss_pred             HHHHHHHHH-------------------------HcCCC-CCEEEEeCchhhhcccCCCCCEEEECCcc----cHH-HHH
Confidence            999999987                         55554 47899999988742233579999987644    556 999


Q ss_pred             HHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++.++|||||++++.....   .++.+++++.|+.+..+...
T Consensus       139 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i~~~  180 (204)
T 3njr_A          139 RLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRIDIA  180 (204)
T ss_dssp             HHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEEEee
Confidence            9999999999999988776   67778889999988776543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.61  E-value=1.5e-14  Score=117.06  Aligned_cols=151  Identities=15%  Similarity=0.223  Sum_probs=113.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+++.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~~~~-------------------~~~~v~~~D~~~~~   86 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIG-------------IALAD-------------------EVKSTTMADINRRA   86 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHH
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHH-------------HHHHH-------------------cCCeEEEEECCHHH
Confidence            34567777777778889999999999988             44444                   24579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-cccHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-VTRIDKAL  188 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-~~~~~~~l  188 (241)
                      ++.+++++.                         ..++.+.++++...|+... .+.++||+|+++..+++ ..+...++
T Consensus        87 ~~~a~~~~~-------------------------~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~l  140 (194)
T 1dus_A           87 IKLAKENIK-------------------------LNNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGKEVLHRII  140 (194)
T ss_dssp             HHHHHHHHH-------------------------HTTCTTSCEEEEECSTTTT-CTTSCEEEEEECCCSTTCHHHHHHHH
T ss_pred             HHHHHHHHH-------------------------HcCCCccceEEEECchhcc-cccCCceEEEECCCcccchhHHHHHH
Confidence            999999887                         4444412488999998774 34678999999888776 46778999


Q ss_pred             HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      +++.++|+|||++++.....   .++.+.+++. |..++......| ..++.++|
T Consensus       141 ~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~k  193 (194)
T 1dus_A          141 EEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNVETVTIKGG-YRVLKSKK  193 (194)
T ss_dssp             HHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCCEEEEEETT-EEEEEEEC
T ss_pred             HHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcceEEEecCCc-EEEEEEee
Confidence            99999999999999988775   5577777777 544544444333 34455555

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.61  E-value=7.8e-16  Score=130.49  Aligned_cols=159  Identities=14%  Similarity=0.195  Sum_probs=111.0

Q ss_pred             hHHHHHhhhhhccccchhhhh-------hhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAMS-------FGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIP   76 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~   76 (241)
                      .....|+..+..|+..+..+.       ..+.+...+.+...+ ..++.+|||+|||+|..+             ..+..
T Consensus        15 ~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~-------------~~l~~   80 (236)
T 1zx0_A           15 NCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAA-------------SKVQE   80 (236)
T ss_dssp             BCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHH-------------HHHHT
T ss_pred             CCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHH-------------HHHHh
Confidence            456778888888885332111       111222223333333 457789999999999988             33322


Q ss_pred             hhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEe
Q psy1420          77 VMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE  156 (241)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (241)
                              .          ....++++|+|+.+++.++++..                         ..+   .++.+++
T Consensus        81 --------~----------~~~~v~gvD~s~~~l~~a~~~~~-------------------------~~~---~~v~~~~  114 (236)
T 1zx0_A           81 --------A----------PIDEHWIIECNDGVFQRLRDWAP-------------------------RQT---HKVIPLK  114 (236)
T ss_dssp             --------S----------CEEEEEEEECCHHHHHHHHHHGG-------------------------GCS---SEEEEEE
T ss_pred             --------c----------CCCeEEEEcCCHHHHHHHHHHHH-------------------------hcC---CCeEEEe
Confidence                    0          23379999999999999999876                         333   3688999


Q ss_pred             cccCCC--CCCCCceeEEee-eehh--h--ccccHHHHHHHHHHhccCCcEEEEEecCH-----------------HHHH
Q psy1420         157 ANAEEL--PIESDSYSAYTI-AFGI--R--NVTRIDKALSEAYRVLKPGGRFLCLEFSH-----------------EEFK  212 (241)
Q Consensus       157 ~d~~~~--~~~~~~~D~V~~-~~~l--~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------~~~~  212 (241)
                      +|+..+  ++++++||+|++ .+.+  +  +..+...++++++++|||||++++.+...                 +...
T Consensus       115 ~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (236)
T 1zx0_A          115 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQV  194 (236)
T ss_dssp             SCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTH
T ss_pred             cCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHH
Confidence            999887  777889999999 5554  1  22344578999999999999999876443                 3456


Q ss_pred             HHHHHCCCce
Q psy1420         213 SMIESAGFQY  222 (241)
Q Consensus       213 ~~l~~~Gf~~  222 (241)
                      ..+.++||..
T Consensus       195 ~~l~~aGF~~  204 (236)
T 1zx0_A          195 PALLEAGFRR  204 (236)
T ss_dssp             HHHHHTTCCG
T ss_pred             HHHHHCCCCC
Confidence            6889999985

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.61  E-value=5.3e-15  Score=132.82  Aligned_cols=146  Identities=16%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.++..++.+|||+|||+|..+             ..++..       .          +...++++|++ .++.
T Consensus       173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~~-------~----------p~~~~~~~D~~-~~~~  221 (348)
T 3lst_A          173 HLILARAGDFPATGTVADVGGGRGGFL-------------LTVLRE-------H----------PGLQGVLLDRA-EVVA  221 (348)
T ss_dssp             HHHHHHHSCCCSSEEEEEETCTTSHHH-------------HHHHHH-------C----------TTEEEEEEECH-HHHT
T ss_pred             HHHHHHhCCccCCceEEEECCccCHHH-------------HHHHHH-------C----------CCCEEEEecCH-HHhh
Confidence            345666777778889999999999988             444431       0          24467899984 3333


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~  189 (241)
                        .++..                         ..+.. +++++..+|+. .+.+  +||+|++..++|++++.  .++|+
T Consensus       222 --~~~~~-------------------------~~~~~-~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~  270 (348)
T 3lst_A          222 --RHRLD-------------------------APDVA-GRWKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILT  270 (348)
T ss_dssp             --TCCCC-------------------------CGGGT-TSEEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             --ccccc-------------------------ccCCC-CCeEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHH
Confidence              22221                         22222 57999999996 3444  79999999999999988  69999


Q ss_pred             HHHHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         190 EAYRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      +++++|||||++++.+..                           .+++.++++++||+++++.. ..+...++.+++
T Consensus       271 ~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~p  347 (348)
T 3lst_A          271 NCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG-TSSVMSIAVGVP  347 (348)
T ss_dssp             HHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE-CSSSCEEEEEEE
T ss_pred             HHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE-CCCCcEEEEEEe
Confidence            999999999999997742                           18899999999999999988 666667766654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=1.1e-14  Score=123.83  Aligned_cols=136  Identities=21%  Similarity=0.329  Sum_probs=97.4

Q ss_pred             HHHhhhhhccccchhhhhhh--hHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420           7 EVFENVAKSYDTMNDAMSFG--IHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG   84 (241)
Q Consensus         7 ~~f~~~~~~yd~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (241)
                      +.|+.++..|+.........  ....+.+.++......++.+|||+|||+|..+             ..++.        
T Consensus         3 ~~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~-------------~~l~~--------   61 (252)
T 1wzn_A            3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPT-------------LELAE--------   61 (252)
T ss_dssp             GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHH-------------HHHHH--------
T ss_pred             hHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHH-------------HHHHH--------
Confidence            46778888888753221111  01122334444555567789999999999988             44444        


Q ss_pred             CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420          85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI  164 (241)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  164 (241)
                                 ....++++|+|+.+++.++++..                         ..+.   ++.+.++|+..++.
T Consensus        62 -----------~~~~v~gvD~s~~~l~~a~~~~~-------------------------~~~~---~v~~~~~d~~~~~~  102 (252)
T 1wzn_A           62 -----------RGYEVVGLDLHEEMLRVARRKAK-------------------------ERNL---KIEFLQGDVLEIAF  102 (252)
T ss_dssp             -----------TTCEEEEEESCHHHHHHHHHHHH-------------------------HTTC---CCEEEESCGGGCCC
T ss_pred             -----------CCCeEEEEECCHHHHHHHHHHHH-------------------------hcCC---ceEEEECChhhccc
Confidence                       34579999999999999998876                         3332   48899999988775


Q ss_pred             CCCceeEEeeeeh-hhcc--ccHHHHHHHHHHhccCCcEEEE
Q psy1420         165 ESDSYSAYTIAFG-IRNV--TRIDKALSEAYRVLKPGGRFLC  203 (241)
Q Consensus       165 ~~~~~D~V~~~~~-l~~~--~~~~~~l~~~~~~LkpgG~l~i  203 (241)
                      + ++||+|++.+. +++.  ++...+++++.++|||||.+++
T Consensus       103 ~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~  143 (252)
T 1wzn_A          103 K-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (252)
T ss_dssp             C-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             C-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            4 68999998643 3333  4567999999999999999876

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.61  E-value=6.9e-15  Score=125.18  Aligned_cols=127  Identities=20%  Similarity=0.242  Sum_probs=100.2

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .   .          ...+++++|+++.+++.+++++.   
T Consensus        69 ~~~~~vLDiG~G~G~~~-------------~~la~----~---~----------~~~~v~~vD~s~~~~~~a~~~~~---  115 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPS-------------LPIKI----C---F----------PHLHVTIVDSLNKRITFLEKLSE---  115 (240)
T ss_dssp             GGCCEEEEECSSSCTTH-------------HHHHH----H---C----------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEecCCCCHHH-------------HHHHH----h---C----------CCCEEEEEeCCHHHHHHHHHHHH---
Confidence            46779999999999988             33331    0   0          35679999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg  198 (241)
                                            ..++.  +++++++|+.+++..   .++||+|++..    +.++..+++.+.++||||
T Consensus       116 ----------------------~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~V~~~~----~~~~~~~l~~~~~~Lkpg  167 (240)
T 1xdz_A          116 ----------------------ALQLE--NTTFCHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKN  167 (240)
T ss_dssp             ----------------------HHTCS--SEEEEESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEE
T ss_pred             ----------------------HcCCC--CEEEEeccHHHhcccccccCCccEEEEec----cCCHHHHHHHHHHhcCCC
Confidence                                  55554  589999998877643   57899999865    477899999999999999


Q ss_pred             cEEEEEecCH-----HHHHHHHHHCCCceEEEEEec
Q psy1420         199 GRFLCLEFSH-----EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       199 G~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      |++++..-..     .++.+.+++.||.+.+...+.
T Consensus       168 G~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~  203 (240)
T 1xdz_A          168 GLFVALKAASAEEELNAGKKAITTLGGELENIHSFK  203 (240)
T ss_dssp             EEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEe
Confidence            9998875332     456778889999988877653

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.60  E-value=1.7e-14  Score=129.57  Aligned_cols=150  Identities=19%  Similarity=0.230  Sum_probs=117.3

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+...++.+|||+|||+|..+             ..++.    .             .+...++++|+ +.+++.
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~----~-------------~~~~~~~~~D~-~~~~~~  221 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFA-------------AAIAR----R-------------APHVSATVLEM-AGTVDT  221 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHH-------------HHHHH----H-------------CTTCEEEEEEC-TTHHHH
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHH-------------HHHHH----h-------------CCCCEEEEecC-HHHHHH
Confidence            44556666677889999999999988             44433    1             02457889999 999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~  190 (241)
                      +++++.                         ..++. +++++..+|+.+ +.+. .||+|++..++|++++.  .+++++
T Consensus       222 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~  273 (360)
T 1tw3_A          222 ARSYLK-------------------------DEGLS-DRVDVVEGDFFE-PLPR-KADAIILSFVLLNWPDHDAVRILTR  273 (360)
T ss_dssp             HHHHHH-------------------------HTTCT-TTEEEEECCTTS-CCSS-CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             HHHHHH-------------------------hcCCC-CceEEEeCCCCC-CCCC-CccEEEEcccccCCCHHHHHHHHHH
Confidence            998887                         44544 479999999875 3333 49999999999999877  489999


Q ss_pred             HHHhccCCcEEEEEecC--H--------------------------HHHHHHHHHCCCceEEEEEecCc----eeEEEee
Q psy1420         191 AYRVLKPGGRFLCLEFS--H--------------------------EEFKSMIESAGFQYVTYENLTFG----VVAIHSG  238 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~--~--------------------------~~~~~~l~~~Gf~~~~~~~~~~~----~~~~~~~  238 (241)
                      ++++|||||++++.+..  .                          +++.++++++||+++++.....+    ...++.+
T Consensus       274 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~  353 (360)
T 1tw3_A          274 CAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVL  353 (360)
T ss_dssp             HHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEE
T ss_pred             HHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEE
Confidence            99999999999998765  1                          78899999999999998877533    2567777


Q ss_pred             ecC
Q psy1420         239 FKL  241 (241)
Q Consensus       239 ~~~  241 (241)
                      +|+
T Consensus       354 ~~~  356 (360)
T 1tw3_A          354 APA  356 (360)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            664

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.60  E-value=4.5e-15  Score=134.21  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=110.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|||+|||+|..+             ..++.       ..          +..+++++|+ +.+++.+++++.   
T Consensus       178 ~~~~~vlDvG~G~G~~~-------------~~l~~-------~~----------p~~~~~~~D~-~~~~~~a~~~~~---  223 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWA-------------TQCVQ-------YN----------KEVEVTIVDL-PQQLEMMRKQTA---  223 (363)
T ss_dssp             GCCSEEEEESCTTCHHH-------------HHHHH-------HS----------TTCEEEEEEC-HHHHHHHHHHHT---
T ss_pred             cCCCEEEEeCCCcCHHH-------------HHHHH-------hC----------CCCEEEEEeC-HHHHHHHHHHHH---
Confidence            45679999999999988             44443       01          3557999999 999999998877   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccH--HHHHHHHHHhccC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKP  197 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkp  197 (241)
                                            ..++. +++++..+|+...  |++ ++||+|++..++|++++.  .++|+++++.|||
T Consensus       224 ----------------------~~~~~-~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p  279 (363)
T 3dp7_A          224 ----------------------GLSGS-ERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK  279 (363)
T ss_dssp             ----------------------TCTTG-GGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT
T ss_pred             ----------------------hcCcc-cceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC
Confidence                                  44443 4799999999886  455 689999999999988776  4889999999999


Q ss_pred             CcEEEEEecC--------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeee
Q psy1420         198 GGRFLCLEFS--------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGF  239 (241)
Q Consensus       198 gG~l~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~  239 (241)
                      ||++++.+..                                .++++++++++||+++++.....+...++..+
T Consensus       280 gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~  353 (363)
T 3dp7_A          280 DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCR  353 (363)
T ss_dssp             TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEE
T ss_pred             CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEe
Confidence            9999997632                                27899999999999998886655445554443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.60  E-value=3.4e-15  Score=130.84  Aligned_cols=117  Identities=14%  Similarity=0.108  Sum_probs=93.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+..... .++.+|||+|||+|..+             ..++.    .+            ....+++++|+|+.+++
T Consensus        26 ~~~l~~~~~-~~~~~vLDiGcG~G~~~-------------~~la~----~~------------~~~~~v~gvD~s~~~~~   75 (299)
T 3g5t_A           26 YKMIDEYHD-GERKLLVDVGCGPGTAT-------------LQMAQ----EL------------KPFEQIIGSDLSATMIK   75 (299)
T ss_dssp             HHHHHHHCC-SCCSEEEEETCTTTHHH-------------HHHHH----HS------------SCCSEEEEEESCHHHHH
T ss_pred             HHHHHHHhc-CCCCEEEEECCCCCHHH-------------HHHHH----hC------------CCCCEEEEEeCCHHHHH
Confidence            344444433 57889999999999988             44442    00            03678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCCCCC------CceeEEeeeehhhccccH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELPIES------DSYSAYTIAFGIRNVTRI  184 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~------~~~D~V~~~~~l~~~~~~  184 (241)
                      .+++++.                         .. +.. .+++++++|+..++.+.      ++||+|++..+++++ ++
T Consensus        76 ~a~~~~~-------------------------~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~  128 (299)
T 3g5t_A           76 TAEVIKE-------------------------GSPDTY-KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DF  128 (299)
T ss_dssp             HHHHHHH-------------------------HCC-CC-TTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CH
T ss_pred             HHHHHHH-------------------------hccCCC-CceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CH
Confidence            9999877                         32 112 47999999999988766      799999999999999 99


Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy1420         185 DKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       185 ~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ..+++++.++|||||.+++.+
T Consensus       129 ~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          129 EKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEEe
Confidence            999999999999999998843

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.60  E-value=1.1e-14  Score=125.05  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=107.7

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+..+||.+|||+|||+|.++             ..++..+|                +...++++|+++.|++.+.+++
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~-------------~~la~~VG----------------~~G~V~avD~s~~~~~~l~~~a  122 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTA-------------SHMSDIIG----------------PRGRIYGVEFAPRVMRDLLTVV  122 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHH-------------HHHHHHHC----------------TTCEEEEEECCHHHHHHHHHHS
T ss_pred             hcCCCCCCEEEEecCcCCHHH-------------HHHHHHhC----------------CCceEEEEeCCHHHHHHHHHhh
Confidence            456799999999999999999             66666554                5678999999999999998887


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                      .                         +.    +++..+.+|....   +...+.+|+|++.  +.+..++..++.++.+.
T Consensus       123 ~-------------------------~~----~ni~~V~~d~~~p~~~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~  171 (233)
T 4df3_A          123 R-------------------------DR----RNIFPILGDARFPEKYRHLVEGVDGLYAD--VAQPEQAAIVVRNARFF  171 (233)
T ss_dssp             T-------------------------TC----TTEEEEESCTTCGGGGTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHH
T ss_pred             H-------------------------hh----cCeeEEEEeccCccccccccceEEEEEEe--ccCChhHHHHHHHHHHh
Confidence            6                         21    3577777776553   4456789999864  34456778899999999


Q ss_pred             ccCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEecC--ceeEEEeee
Q psy1420         195 LKPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLTF--GVVAIHSGF  239 (241)
Q Consensus       195 LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~  239 (241)
                      |||||+++++....            ++..+.|+++||++++..++..  -.+.+++|+
T Consensus       172 LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~  230 (233)
T 4df3_A          172 LRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV  230 (233)
T ss_dssp             EEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred             ccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence            99999998864222            4456778999999998887732  345555553

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.60  E-value=8.8e-15  Score=126.53  Aligned_cols=143  Identities=9%  Similarity=0.026  Sum_probs=101.1

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|..+             ..++.                   .+..++|+|+|+.+++.++++...
T Consensus        65 ~~~~~~~vLD~GCG~G~~~-------------~~La~-------------------~G~~V~gvD~S~~~i~~a~~~~~~  112 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEM-------------KWFAD-------------------RGHTVVGVEISEIGIREFFAEQNL  112 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHH-------------HHHHH-------------------TTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             cCCCCCeEEEeCCCCcHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHHHhccc
Confidence            3456789999999999988             43443                   356899999999999999766430


Q ss_pred             CCCccccccccceecceeeeeeccccC---CCCCCeeEEecccCCCCCCC-CceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKID---IPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTR--IDKALSEAYR  193 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~--~~~~l~~~~~  193 (241)
                      -+             ....+.......   -...++++.++|+..++.+. ++||+|++..++++++.  ...+++++.+
T Consensus       113 ~~-------------~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~  179 (252)
T 2gb4_A          113 SY-------------TEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILS  179 (252)
T ss_dssp             CE-------------EEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHH
T ss_pred             cc-------------ccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHH
Confidence            00             000000000000   00136899999999987653 79999999988888754  5679999999


Q ss_pred             hccCCcEEEEEe--------------cCHHHHHHHHHHCCCceEEEEEe
Q psy1420         194 VLKPGGRFLCLE--------------FSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       194 ~LkpgG~l~i~~--------------~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +|||||++++.+              ++.+++.+++.. +|+++..+..
T Consensus       180 ~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~~  227 (252)
T 2gb4_A          180 LLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEEV  227 (252)
T ss_dssp             TEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             HcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEecc
Confidence            999999987543              234889999987 5988777654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.60  E-value=2e-14  Score=118.46  Aligned_cols=130  Identities=19%  Similarity=0.320  Sum_probs=100.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+.+.+  .++.+|||+|||+|..+             ..++.                  .....++++|+++.++
T Consensus        32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~-------------~~l~~------------------~~~~~v~~~D~s~~~~   78 (215)
T 2pxx_A           32 FRALLEPEL--RPEDRILVLGCGNSALS-------------YELFL------------------GGFPNVTSVDYSSVVV   78 (215)
T ss_dssp             HHHHHGGGC--CTTCCEEEETCTTCSHH-------------HHHHH------------------TTCCCEEEEESCHHHH
T ss_pred             HHHHHHHhc--CCCCeEEEECCCCcHHH-------------HHHHH------------------cCCCcEEEEeCCHHHH
Confidence            344444443  56779999999999988             44433                  0123799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--------
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--------  182 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--------  182 (241)
                      +.++++..                         .    .+++.+..+|+..++.+.++||+|++...++++.        
T Consensus        79 ~~a~~~~~-------------------------~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~  129 (215)
T 2pxx_A           79 AAMQACYA-------------------------H----VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWT  129 (215)
T ss_dssp             HHHHHHTT-------------------------T----CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTS
T ss_pred             HHHHHhcc-------------------------c----CCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccc
Confidence            99998865                         2    1368899999998887778999999988886543        


Q ss_pred             -------cHHHHHHHHHHhccCCcEEEEEecCHHH-HHHHHHHCCCce
Q psy1420         183 -------RIDKALSEAYRVLKPGGRFLCLEFSHEE-FKSMIESAGFQY  222 (241)
Q Consensus       183 -------~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~l~~~Gf~~  222 (241)
                             ++..+++++.++|||||++++.++.... ...++...|+.+
T Consensus       130 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~  177 (215)
T 2pxx_A          130 VSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGW  177 (215)
T ss_dssp             CCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHCCGGGCE
T ss_pred             cccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHhccccCc
Confidence                   6689999999999999999999988754 455666777743

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.59  E-value=5.5e-15  Score=121.91  Aligned_cols=126  Identities=21%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                  ....+++++|+++.+++.+++++.   
T Consensus        22 ~~~~~vLDiGcG~G~~~-------------~~~~~------------------~~~~~v~~vD~s~~~~~~a~~~~~---   67 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPP-------------LSIFV------------------EDGYKTYGIEISDLQLKKAENFSR---   67 (209)
T ss_dssp             SSCSEEEEESCCSSSCT-------------HHHHH------------------HTTCEEEEEECCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEECCCCCHHH-------------HHHHH------------------hCCCEEEEEECCHHHHHHHHHHHH---
Confidence            46789999999999975             22221                  034589999999999999998876   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~~~~~~LkpgG  199 (241)
                                            ..+   .++.+..+|+..++.++++||+|++..+++++  .++..+++++.++|||||
T Consensus        68 ----------------------~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  122 (209)
T 2p8j_A           68 ----------------------ENN---FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGG  122 (209)
T ss_dssp             ----------------------HHT---CCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             ----------------------hcC---CceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCc
Confidence                                  322   25788999999988877899999999999998  678899999999999999


Q ss_pred             EEEEEecC--------------------------------HHHHHHHHHHCCCceEEEE
Q psy1420         200 RFLCLEFS--------------------------------HEEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       200 ~l~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~  226 (241)
                      ++++.+++                                .+++.++++++||...+..
T Consensus       123 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~  181 (209)
T 2p8j_A          123 LACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR  181 (209)
T ss_dssp             EEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred             EEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence            99986532                                1678889999998665443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.59  E-value=7.1e-15  Score=120.94  Aligned_cols=124  Identities=19%  Similarity=0.293  Sum_probs=99.8

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++ +|||+|||+|..+             ..+..                   ....++++|+++.+++.++++..    
T Consensus        30 ~~-~vLdiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~~----   72 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNA-------------CFLAS-------------------LGYEVTAVDQSSVGLAKAKQLAQ----   72 (202)
T ss_dssp             SS-EEEECCCSCTHHH-------------HHHHT-------------------TTCEEEEECSSHHHHHHHHHHHH----
T ss_pred             CC-CEEEECCCCCHhH-------------HHHHh-------------------CCCeEEEEECCHHHHHHHHHHHH----
Confidence            45 9999999999988             43333                   24589999999999999998876    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                           ..+.   ++.+..+|+...+.+.++||+|++........++..+++++.++|||||+++
T Consensus        73 ---------------------~~~~---~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  128 (202)
T 2kw5_A           73 ---------------------EKGV---KITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFI  128 (202)
T ss_dssp             ---------------------HHTC---CEEEECCBTTTBSCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEE
T ss_pred             ---------------------hcCC---ceEEEEcChhhcCCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEE
Confidence                                 3332   4888999999888777899999986543334577899999999999999999


Q ss_pred             EEecCH-------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         203 CLEFSH-------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       203 i~~~~~-------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +.++..                   +++.++++  ||++++.....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~  172 (202)
T 2kw5_A          129 LEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLE  172 (202)
T ss_dssp             EEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEE
T ss_pred             EEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEE
Confidence            986322                   88899998  99998887764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.58  E-value=3.6e-14  Score=114.55  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=103.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .....+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~-------------------~~~~v~~~D~~~~~   67 (192)
T 1l3i_A           20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVT-------------LELAG-------------------RVRRVYAIDRNPEA   67 (192)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHH-------------HHHHT-------------------TSSEEEEEESCHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH-------------------hcCEEEEEECCHHH
Confidence            34556666677788899999999999988             44443                   23679999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhccccHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      ++.+++++.                         ..+.. +++.+.+.|+.. +.+. ++||+|++...++   +...++
T Consensus        68 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~---~~~~~l  117 (192)
T 1l3i_A           68 ISTTEMNLQ-------------------------RHGLG-DNVTLMEGDAPE-ALCKIPDIDIAVVGGSGG---ELQEIL  117 (192)
T ss_dssp             HHHHHHHHH-------------------------HTTCC-TTEEEEESCHHH-HHTTSCCEEEEEESCCTT---CHHHHH
T ss_pred             HHHHHHHHH-------------------------HcCCC-cceEEEecCHHH-hcccCCCCCEEEECCchH---HHHHHH
Confidence            999999887                         44442 368888888776 2222 5899999887654   568899


Q ss_pred             HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceE
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYV  223 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~  223 (241)
                      +.+.++|+|||.+++.....   .++.+.+++.||.+.
T Consensus       118 ~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A          118 RIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             HHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             HHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence            99999999999999987766   677888999999543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.58  E-value=8.4e-15  Score=127.23  Aligned_cols=129  Identities=15%  Similarity=0.218  Sum_probs=101.6

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ++.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.+++
T Consensus       113 ~~~~~~~~~~~vLD~GcG~G~~~-------------~~l~~-------------------~g~~v~~vD~s~~~~~~a~~  160 (286)
T 3m70_A          113 VDAAKIISPCKVLDLGCGQGRNS-------------LYLSL-------------------LGYDVTSWDHNENSIAFLNE  160 (286)
T ss_dssp             HHHHHHSCSCEEEEESCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhhccCCCcEEEECCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHHH
Confidence            33333347789999999999988             44444                   34589999999999999999


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYR  193 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~  193 (241)
                      ++.                         ..++   ++++.++|+...+. .++||+|+++.+++++++  ...+++++.+
T Consensus       161 ~~~-------------------------~~~~---~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~  211 (286)
T 3m70_A          161 TKE-------------------------KENL---NISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKE  211 (286)
T ss_dssp             HHH-------------------------HTTC---CEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHH
T ss_pred             HHH-------------------------HcCC---ceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHH
Confidence            887                         4443   58999999998876 678999999999998854  5699999999


Q ss_pred             hccCCcEEEEEec----------------CHHHHHHHHHHCCCceEEEEE
Q psy1420         194 VLKPGGRFLCLEF----------------SHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       194 ~LkpgG~l~i~~~----------------~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      +|||||++++...                ..+++.+++..  |+++.+..
T Consensus       212 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~  259 (286)
T 3m70_A          212 HTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNE  259 (286)
T ss_dssp             TEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred             hcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEc
Confidence            9999999777542                12788888755  88877753

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.57  E-value=6.3e-15  Score=129.40  Aligned_cols=155  Identities=17%  Similarity=0.180  Sum_probs=100.8

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.    ..             ....++++|+++.+++.+++++.....
T Consensus        46 ~~~~VLDiGCG~G~~~-------------~~la~----~~-------------~~~~v~gvDis~~~i~~A~~~~~~~~~   95 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLT-------------LSIAC----KW-------------GPSRMVGLDIDSRLIHSARQNIRHYLS   95 (292)
T ss_dssp             TTSEEEEESCTTCHHH-------------HHHHH----HT-------------CCSEEEEEESCHHHHHHHHHTC-----
T ss_pred             CCCcEEEeCCCCCHHH-------------HHHHH----Hc-------------CCCEEEEECCCHHHHHHHHHHHHhhhh
Confidence            6789999999999988             44433    10             246899999999999999987652210


Q ss_pred             c-----------------------cccccccceecceeeeee---------ccccCCCCCCeeEEecccCCCC-----CC
Q psy1420         123 E-----------------------SDSYSAYTIAFGIRNVTR---------IDKIDIPNPRLRFLEANAEELP-----IE  165 (241)
Q Consensus       123 ~-----------------------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~~~~-----~~  165 (241)
                      .                       .+...+.++.........         .....++ .++++.++|+...+     ..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p-~~v~f~~~d~~~~~~~~~~~~  174 (292)
T 3g07_A           96 EELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFP-NNVVFVTGNYVLDRDDLVEAQ  174 (292)
T ss_dssp             ----------------------------------------------CCSSTTCCSSTT-TTEEEEECCCCCSSHHHHTTC
T ss_pred             hhccccccccccccccccccccccccccccccchhhhccCcccccccccccccccccc-ccceEEecccccCcccccccc
Confidence            0                       000001111111100000         0011122 47999999987654     45


Q ss_pred             CCceeEEeeeehhhccc------cHHHHHHHHHHhccCCcEEEEEecCH------------------------HHHHHHH
Q psy1420         166 SDSYSAYTIAFGIRNVT------RIDKALSEAYRVLKPGGRFLCLEFSH------------------------EEFKSMI  215 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~------------------------~~~~~~l  215 (241)
                      .++||+|+|..+++++.      ++.+++++++++|+|||+|++.....                        +++.++|
T Consensus       175 ~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L  254 (292)
T 3g07_A          175 TPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYL  254 (292)
T ss_dssp             CCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHH
T ss_pred             CCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHH
Confidence            67999999999987664      77899999999999999999864322                        7888999


Q ss_pred             HH--CCCceEEEEEe
Q psy1420         216 ES--AGFQYVTYENL  228 (241)
Q Consensus       216 ~~--~Gf~~~~~~~~  228 (241)
                      .+  +||..++....
T Consensus       255 ~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          255 TSPDVGFSSYELVAT  269 (292)
T ss_dssp             TSTTTCCCEEEEC--
T ss_pred             HhcCCCceEEEEecc
Confidence            98  99987776544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.57  E-value=4.7e-14  Score=127.31  Aligned_cols=147  Identities=17%  Similarity=0.201  Sum_probs=115.3

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+.+.++..+..+|+|||||+|..+             ..++.       ..          +..+.+..|. |.+++.
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~-------------~~l~~-------~~----------p~~~~~~~dl-p~v~~~  217 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALA-------------KECMS-------LY----------PGCKITVFDI-PEVVWT  217 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHH-------------HHHHH-------HC----------SSCEEEEEEC-HHHHHH
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHH-------------HHHHH-------hC----------CCceeEeccC-HHHHHH
Confidence            44556666677789999999999988             44443       11          3456778886 778888


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~  190 (241)
                      +++...                         ..+  .+++++..+|+...|.+  .+|+|++..++|++++.  .++|++
T Consensus       218 a~~~~~-------------------------~~~--~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~~~d~~~~~iL~~  268 (353)
T 4a6d_A          218 AKQHFS-------------------------FQE--EEQIDFQEGDFFKDPLP--EADLYILARVLHDWADGKCSHLLER  268 (353)
T ss_dssp             HHHHSC-------------------------C----CCSEEEEESCTTTSCCC--CCSEEEEESSGGGSCHHHHHHHHHH
T ss_pred             HHHhhh-------------------------hcc--cCceeeecCccccCCCC--CceEEEeeeecccCCHHHHHHHHHH
Confidence            887765                         333  25899999999876654  47999999999999887  478999


Q ss_pred             HHHhccCCcEEEEEecCH----------------------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         191 AYRVLKPGGRFLCLEFSH----------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~----------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      +++.|+|||++++.+...                            ++|+++++++||+.+++... .+...+++|+|
T Consensus       269 ~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~-~~~~~~i~ArK  345 (353)
T 4a6d_A          269 IYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKT-GAIYDAILARK  345 (353)
T ss_dssp             HHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECC-SSSCEEEEEEC
T ss_pred             HHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEc-CCceEEEEEEe
Confidence            999999999999987432                            78999999999999998775 55667888887

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=9.6e-15  Score=123.82  Aligned_cols=125  Identities=10%  Similarity=0.091  Sum_probs=99.9

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|.++             ..++.                   ...+++++|+++.+++.++++..  
T Consensus        54 ~~~~~~vLD~GcG~G~~~-------------~~la~-------------------~~~~v~gvD~s~~~~~~a~~~~~--   99 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQT-------------KFLSQ-------------------FFPRVIGLDVSKSALEIAAKENT--   99 (245)
T ss_dssp             SCTTSCEEEETCTTSHHH-------------HHHHH-------------------HSSCEEEEESCHHHHHHHHHHSC--
T ss_pred             cCCCCeEEEEcCCCCHHH-------------HHHHH-------------------hCCCEEEEECCHHHHHHHHHhCc--
Confidence            467789999999999988             44444                   23479999999999999987754  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-----CceeEEeeeehhhccc--cHHHHHHHHHH
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-----DSYSAYTIAFGIRNVT--RIDKALSEAYR  193 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~V~~~~~l~~~~--~~~~~l~~~~~  193 (241)
                                             .     .++++.++|+..++...     ..||+|++..++++++  +...+++++.+
T Consensus       100 -----------------------~-----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~  151 (245)
T 3ggd_A          100 -----------------------A-----ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRI  151 (245)
T ss_dssp             -----------------------C-----TTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHH
T ss_pred             -----------------------c-----cCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHH
Confidence                                   1     36889999998865321     2489999999999998  78999999999


Q ss_pred             hccCCcEEEEEecCH-----------------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         194 VLKPGGRFLCLEFSH-----------------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       194 ~LkpgG~l~i~~~~~-----------------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +|||||++++.++..                                   +++.+++  +||+++......
T Consensus       152 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~~~~  220 (245)
T 3ggd_A          152 LLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQGEGL  220 (245)
T ss_dssp             HHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEECCB
T ss_pred             HcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEeccccc
Confidence            999999999887542                                   5667777  899988776543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.56  E-value=3e-14  Score=117.76  Aligned_cols=135  Identities=12%  Similarity=0.049  Sum_probs=104.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..+..                  .....++++|+++.+++.+++++.   
T Consensus        59 ~~~~~vLDiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~~a~~~~~---  104 (205)
T 3grz_A           59 VKPLTVADVGTGSGILA-------------IAAHK------------------LGAKSVLATDISDESMTAAEENAA---  104 (205)
T ss_dssp             SSCCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH---
T ss_pred             cCCCEEEEECCCCCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence            56789999999999887             33332                  124589999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++.  ++++..+|+...+  .++||+|+++..+++   ...+++++.++|+|||++
T Consensus       105 ----------------------~~~~~--~v~~~~~d~~~~~--~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l  155 (205)
T 3grz_A          105 ----------------------LNGIY--DIALQKTSLLADV--DGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQV  155 (205)
T ss_dssp             ----------------------HTTCC--CCEEEESSTTTTC--CSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEE
T ss_pred             ----------------------HcCCC--ceEEEeccccccC--CCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEE
Confidence                                  55544  3889999987653  578999999877754   478899999999999999


Q ss_pred             EEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         202 LCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      ++.++..   +++.++++++||+.++.... .+-..+...++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~-~~w~~~~~~~~  196 (205)
T 3grz_A          156 IFSGIDYLQLPKIEQALAENSFQIDLKMRA-GRWIGLAISRK  196 (205)
T ss_dssp             EEEEEEGGGHHHHHHHHHHTTEEEEEEEEE-TTEEEEEEEEC
T ss_pred             EEEecCcccHHHHHHHHHHcCCceEEeecc-CCEEEEEEecc
Confidence            9875444   88999999999998887664 44444444443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.55  E-value=2.4e-14  Score=116.30  Aligned_cols=130  Identities=13%  Similarity=0.168  Sum_probs=94.5

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++.+++++.  
T Consensus        20 ~~~~~~vLDiGcG~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~l~~a~~~~~--   65 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDT-------------AFLAG-------------------LSKKVYAFDVQEQALGKTSQRLS--   65 (185)
T ss_dssp             CCTTCEEEESCCTTSHHH-------------HHHHT-------------------TSSEEEEEESCHHHHHHHHHHHH--
T ss_pred             CCCCCEEEEEcCCCCHHH-------------HHHHH-------------------hCCEEEEEECCHHHHHHHHHHHH--
Confidence            357789999999999988             44444                   25689999999999999999987  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhh---------ccccHHHHHHH
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIR---------NVTRIDKALSE  190 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~---------~~~~~~~~l~~  190 (241)
                                             ..++.  ++++++.+...++ ..+++||+|+++....         ...+...++++
T Consensus        66 -----------------------~~~~~--~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (185)
T 3mti_A           66 -----------------------DLGIE--NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEK  120 (185)
T ss_dssp             -----------------------HHTCC--CEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHH
T ss_pred             -----------------------HcCCC--cEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHH
Confidence                                   55553  6888887777643 3467899998874322         12345688999


Q ss_pred             HHHhccCCcEEEEEecCH--------HHHHHHHH---HCCCceEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEFSH--------EEFKSMIE---SAGFQYVTYENLT  229 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~--------~~~~~~l~---~~Gf~~~~~~~~~  229 (241)
                      +.++|||||++++..+..        +.+.++++   ..+|.+..+..++
T Consensus       121 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  170 (185)
T 3mti_A          121 ILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN  170 (185)
T ss_dssp             HHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS
T ss_pred             HHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc
Confidence            999999999999987653        34444554   4557777666553

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=7.4e-14  Score=112.08  Aligned_cols=130  Identities=15%  Similarity=0.219  Sum_probs=105.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~   69 (183)
T 2yxd_A           22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMT-------------VEIAK-------------------RCKFVYAIDYLDGA   69 (183)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCCCSHHH-------------HHHHT-------------------TSSEEEEEECSHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHh-------------------cCCeEEEEeCCHHH
Confidence            34556666777778889999999999988             33333                   35689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.+++++.                         ..+++  ++++.++|+.. +.+.++||+|++...    .++..+++
T Consensus        70 ~~~a~~~~~-------------------------~~~~~--~~~~~~~d~~~-~~~~~~~D~i~~~~~----~~~~~~l~  117 (183)
T 2yxd_A           70 IEVTKQNLA-------------------------KFNIK--NCQIIKGRAED-VLDKLEFNKAFIGGT----KNIEKIIE  117 (183)
T ss_dssp             HHHHHHHHH-------------------------HTTCC--SEEEEESCHHH-HGGGCCCSEEEECSC----SCHHHHHH
T ss_pred             HHHHHHHHH-------------------------HcCCC--cEEEEECCccc-cccCCCCcEEEECCc----ccHHHHHH
Confidence            999999987                         54543  68899999877 555578999999877    67889999


Q ss_pred             HHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEE
Q psy1420         190 EAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~  225 (241)
                      ++.++  |||.+++.....   .++.+.++++||.+...
T Consensus       118 ~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          118 ILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             HHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence            99998  999999988776   67888999999876554

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.55  E-value=2.3e-14  Score=116.08  Aligned_cols=126  Identities=12%  Similarity=0.005  Sum_probs=99.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                   .. .++++|+++.+++.     .   
T Consensus        22 ~~~~~vLD~GcG~G~~~-------------~~l~~-------------------~~-~v~gvD~s~~~~~~-----~---   60 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVIT-------------EQLRK-------------------RN-TVVSTDLNIRALES-----H---   60 (170)
T ss_dssp             CCSCEEEEETCTTCHHH-------------HHHTT-------------------TS-EEEEEESCHHHHHT-----C---
T ss_pred             CCCCeEEEeccCccHHH-------------HHHHh-------------------cC-cEEEEECCHHHHhc-----c---
Confidence            45669999999999988             44444                   34 89999999999877     2   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH---------HHHHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI---------DKALSEAY  192 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~---------~~~l~~~~  192 (241)
                                                  .++++.++|+.+ +.+.++||+|+++..+++.++.         ...+.++.
T Consensus        61 ----------------------------~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (170)
T 3q87_B           61 ----------------------------RGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFV  111 (170)
T ss_dssp             ----------------------------SSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHH
T ss_pred             ----------------------------cCCeEEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHH
Confidence                                        257889999887 4555799999998877754443         57888888


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEee
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSG  238 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~  238 (241)
                      +.+ |||++++.....   +++.++++++||+.+.+.....|.-.+++.
T Consensus       112 ~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~  159 (170)
T 3q87_B          112 DAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYII  159 (170)
T ss_dssp             HHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEE
T ss_pred             hhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEE
Confidence            888 999999876443   889999999999999888887666555443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.54  E-value=1.6e-13  Score=115.24  Aligned_cols=136  Identities=14%  Similarity=0.112  Sum_probs=100.3

Q ss_pred             CCCCCCeEEEEecC-CCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          40 GPTHDTKLLDVAGG-TDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        40 ~~~~~~~vLdvG~G-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ..+++.+|||+||| +|..+             ..++.    .              ...+++++|+++.+++.+++++.
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~-------------~~la~----~--------------~~~~v~~vD~s~~~~~~a~~~~~  100 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMA-------------LMAEK----F--------------FNCKVTATEVDEEFFEYARRNIE  100 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHH-------------HHHHH----H--------------HCCEEEEEECCHHHHHHHHHHHH
T ss_pred             hcCCCCEEEEcCCCHHHHHH-------------HHHHH----h--------------cCCEEEEEECCHHHHHHHHHHHH
Confidence            34678899999999 99988             44433    1              14679999999999999999987


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc---------------
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT---------------  182 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~---------------  182 (241)
                                               ..++   +++++++|+... +.++++||+|+++...+...               
T Consensus       101 -------------------------~~~~---~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~  152 (230)
T 3evz_A          101 -------------------------RNNS---NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGK  152 (230)
T ss_dssp             -------------------------HTTC---CCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCS
T ss_pred             -------------------------HhCC---CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCc
Confidence                                     4443   488999996533 34467899999875443322               


Q ss_pred             ----cHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420         183 ----RIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLTFGVVA  234 (241)
Q Consensus       183 ----~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~~~~~~  234 (241)
                          .+..+++++.++|||||++++.....    +++.+.++++||.+..+....+....
T Consensus       153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~  212 (230)
T 3evz_A          153 YGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTRWR  212 (230)
T ss_dssp             SSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-CE
T ss_pred             cchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCeEE
Confidence                24789999999999999998864332    78889999999987776554443333

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.54  E-value=1e-14  Score=122.90  Aligned_cols=117  Identities=21%  Similarity=0.285  Sum_probs=95.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++.++++.    
T Consensus        47 ~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~----   90 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDA-------------ARFGP-------------------QAARWAAYDFSPELLKLARANA----   90 (226)
T ss_dssp             CTTCEEEEESCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHHHHHHHHHC----
T ss_pred             CCCCeEEEeCCCCCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHhC----
Confidence            46789999999999988             44444                   3568999999999999998773    


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCCCC-CCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                                  ++++++++|+ ..+|.+ +++||+|+++      .++..+++++.++|||||
T Consensus        91 ----------------------------~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG  136 (226)
T 3m33_A           91 ----------------------------PHADVYEWNGKGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDA  136 (226)
T ss_dssp             ----------------------------TTSEEEECCSCSSCCTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEE
T ss_pred             ----------------------------CCceEEEcchhhccCCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCc
Confidence                                        2588999998 567777 7899999986      467788999999999999


Q ss_pred             EEEEEe--cCHHHHHHHHHHCCCceEEEEEe
Q psy1420         200 RFLCLE--FSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       200 ~l~i~~--~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++...  ...+++.+.++++||........
T Consensus       137 ~l~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  167 (226)
T 3m33_A          137 HFLYVGPRLNVPEVPERLAAVGWDIVAEDHV  167 (226)
T ss_dssp             EEEEEESSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEeCCcCCHHHHHHHHHHCCCeEEEEEee
Confidence            998332  23389999999999998877654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.53  E-value=1.1e-13  Score=125.50  Aligned_cols=140  Identities=17%  Similarity=0.231  Sum_probs=105.4

Q ss_pred             HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ..+++.+. ..+..+|||+|||+|..+             ..++.    .   .          +..+++++|+ +.+++
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~  240 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVA-------------SMIVA----K---Y----------PSINAINFDL-PHVIQ  240 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHT
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHH-------------HHHHH----h---C----------CCCEEEEEeh-HHHHH
Confidence            44555555 566789999999999988             44443    0   1          3457899999 77665


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~  189 (241)
                      .+++                                 .+++++..+|+.+ +.+..  |+|++..++|++++.+  ++|+
T Consensus       241 ~a~~---------------------------------~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~  284 (368)
T 3reo_A          241 DAPA---------------------------------FSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLK  284 (368)
T ss_dssp             TCCC---------------------------------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHH
T ss_pred             hhhh---------------------------------cCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHH
Confidence            4321                                 0368999999886 56543  9999999999988764  8899


Q ss_pred             HHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHS  237 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  237 (241)
                      +++++|||||++++.+...                                ++|+++++++||+.+++.....+.. ++.
T Consensus       285 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie  363 (368)
T 3reo_A          285 NCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTY-VME  363 (368)
T ss_dssp             HHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEE-EEE
T ss_pred             HHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcE-EEE
Confidence            9999999999999976421                                7899999999999999998876644 444


Q ss_pred             eec
Q psy1420         238 GFK  240 (241)
Q Consensus       238 ~~~  240 (241)
                      .+|
T Consensus       364 ~~k  366 (368)
T 3reo_A          364 FLK  366 (368)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            444

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.53  E-value=5.4e-14  Score=121.21  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=100.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .             .+..+++++|+++.+++.+++++.   
T Consensus        79 ~~~~~vLDiG~G~G~~~-------------i~la~----~-------------~~~~~v~~vD~s~~~~~~a~~~~~---  125 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPG-------------LPLKI----V-------------RPELELVLVDATRKKVAFVERAIE---  125 (249)
T ss_dssp             CSSCEEEEETCTTTTTH-------------HHHHH----H-------------CTTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEEcCCCCHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence            56789999999999988             33322    1             035689999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg  198 (241)
                                            ..++.  +++++++|+++.+..   .++||+|++.    .+.+...+++.+.++||||
T Consensus       126 ----------------------~~~l~--~v~~~~~d~~~~~~~~~~~~~fD~I~s~----a~~~~~~ll~~~~~~Lkpg  177 (249)
T 3g89_A          126 ----------------------VLGLK--GARALWGRAEVLAREAGHREAYARAVAR----AVAPLCVLSELLLPFLEVG  177 (249)
T ss_dssp             ----------------------HHTCS--SEEEEECCHHHHTTSTTTTTCEEEEEEE----SSCCHHHHHHHHGGGEEEE
T ss_pred             ----------------------HhCCC--ceEEEECcHHHhhcccccCCCceEEEEC----CcCCHHHHHHHHHHHcCCC
Confidence                                  55665  599999999887542   4789999984    3567789999999999999


Q ss_pred             cEEEEEecC--H---HHHHHHHHHCCCceEEEEEec
Q psy1420         199 GRFLCLEFS--H---EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       199 G~l~i~~~~--~---~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      |++++..-.  .   .++...++..||.+.++..++
T Consensus       178 G~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~  213 (249)
T 3g89_A          178 GAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQ  213 (249)
T ss_dssp             EEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEee
Confidence            999886532  2   556778889999998887764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.53  E-value=3.3e-15  Score=123.03  Aligned_cols=153  Identities=15%  Similarity=0.087  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          29 RLWKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        29 ~~~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      ..+.+.+++.+.. .++.+|||+|||+|..+             ..++.    ..             ...+++++|+++
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~-------------~~l~~----~~-------------~~~~v~~vD~~~   64 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIA-------------VSIAL----AC-------------PGVSVTAVDLSM   64 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHH-------------HHHHH----HC-------------TTEEEEEEECC-
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHH-------------HHHHH----hC-------------CCCeEEEEECCH
Confidence            3445566666655 67889999999999988             44433    10             245899999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-----CceeEEeeeehhhccc
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-----DSYSAYTIAFGIRNVT  182 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~V~~~~~l~~~~  182 (241)
                      .+++.+++++.                         ..+.   ++++.++|+.. +.+.     ++||+|+++...+...
T Consensus        65 ~~~~~a~~~~~-------------------------~~~~---~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           65 DALAVARRNAE-------------------------RFGA---VVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             ----------------------------------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC--
T ss_pred             HHHHHHHHHHH-------------------------HhCC---ceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCc
Confidence            99999998876                         3322   46778888776 4433     7899999864332211


Q ss_pred             c--------------------------HHHHHHHHHHhccCCcEEEEEecC---HHHHHHHHH--HCCCceEEEEEecCc
Q psy1420         183 R--------------------------IDKALSEAYRVLKPGGRFLCLEFS---HEEFKSMIE--SAGFQYVTYENLTFG  231 (241)
Q Consensus       183 ~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~---~~~~~~~l~--~~Gf~~~~~~~~~~~  231 (241)
                      +                          ...+++++.++|||||++++.+..   .+.+.++++  ++||..++...-..|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~  195 (215)
T 4dzr_A          116 EIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRG  195 (215)
T ss_dssp             ----------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTS
T ss_pred             cccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCC
Confidence            1                          167889999999999995555543   388899999  999988888777777


Q ss_pred             eeEEEeeec
Q psy1420         232 VVAIHSGFK  240 (241)
Q Consensus       232 ~~~~~~~~~  240 (241)
                      ...++++++
T Consensus       196 ~~r~~~~~~  204 (215)
T 4dzr_A          196 IDRVIAVTR  204 (215)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            777777665

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.52  E-value=1.2e-13  Score=120.01  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=114.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+. .++.+|||+|||+|..+             ..++.    .             .+...++++|+|+.++
T Consensus        98 l~~~~l~~~~-~~~~~vLDlG~GsG~~~-------------~~la~----~-------------~~~~~v~~vD~s~~~l  146 (276)
T 2b3t_A           98 LVEQALARLP-EQPCRILDLGTGTGAIA-------------LALAS----E-------------RPDCEIIAVDRMPDAV  146 (276)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHH-------------HHHHH----H-------------CTTSEEEEECSSHHHH
T ss_pred             HHHHHHHhcc-cCCCEEEEecCCccHHH-------------HHHHH----h-------------CCCCEEEEEECCHHHH
Confidence            4455666655 56779999999999988             43332    1             0256899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh-------------
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG-------------  177 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~-------------  177 (241)
                      +.+++++.                         ..+++  ++++.++|+... .+.++||+|+++..             
T Consensus       147 ~~a~~n~~-------------------------~~~~~--~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v  198 (276)
T 2b3t_A          147 SLAQRNAQ-------------------------HLAIK--NIHILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGD  198 (276)
T ss_dssp             HHHHHHHH-------------------------HHTCC--SEEEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSG
T ss_pred             HHHHHHHH-------------------------HcCCC--ceEEEEcchhhh-cccCCccEEEECCCCCCccccccChhh
Confidence            99999987                         54544  688999998764 33568999998732             


Q ss_pred             hhcc------------ccHHHHHHHHHHhccCCcEEEEEe--cCHHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         178 IRNV------------TRIDKALSEAYRVLKPGGRFLCLE--FSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       178 l~~~------------~~~~~~l~~~~~~LkpgG~l~i~~--~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                      +++.            .....+++.+.++|||||++++..  ...+++.++++++||..++...-..|...++++++
T Consensus       199 ~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          199 VRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             GGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             hhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence            2221            245788999999999999998854  23388999999999998887776778888777765

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.52  E-value=8.4e-14  Score=117.69  Aligned_cols=139  Identities=15%  Similarity=0.167  Sum_probs=103.2

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ++.+...++.+|||+|||+|..+             ..++..+                 ....++++|+++.+++.+++
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~-------------~~la~~~-----------------~~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTP-------------SHVADIA-----------------DKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHH-------------HHHHHHT-----------------TTSEEEEEESCHHHHHHHHH
T ss_pred             ccccCCCCCCEEEEEcccCCHHH-------------HHHHHHc-----------------CCcEEEEEECCHHHHHHHHH
Confidence            44455678889999999999988             4444410                 13579999999999999988


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccccH---HHHH
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVTRI---DKAL  188 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~~~---~~~l  188 (241)
                      ++.                         ..    .++.++.+|+..    .+.. ++||+|+     ++++++   ..++
T Consensus       117 ~~~-------------------------~~----~~v~~~~~d~~~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l  161 (230)
T 1fbn_A          117 ACA-------------------------ER----ENIIPILGDANKPQEYANIV-EKVDVIY-----EDVAQPNQAEILI  161 (230)
T ss_dssp             HTT-------------------------TC----TTEEEEECCTTCGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHH
T ss_pred             Hhh-------------------------cC----CCeEEEECCCCCcccccccC-ccEEEEE-----EecCChhHHHHHH
Confidence            876                         22    368888999887    5655 7899998     345555   7789


Q ss_pred             HHHHHhccCCcEEEEEec------C-------HHHHHHHHHHCCCceEEEEEecC--ceeEEEeeec
Q psy1420         189 SEAYRVLKPGGRFLCLEF------S-------HEEFKSMIESAGFQYVTYENLTF--GVVAIHSGFK  240 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~------~-------~~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~~  240 (241)
                      +++.++|||||++++.-.      .       .+++. +++++||+.++...+..  .-..+++++|
T Consensus       162 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k  227 (230)
T 1fbn_A          162 KNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             HHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred             HHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence            999999999999998511      1       15666 89999999988887643  2355556655

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.52  E-value=2.4e-14  Score=119.44  Aligned_cols=140  Identities=22%  Similarity=0.288  Sum_probs=99.9

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ++.+...++.+|||+|||+|..+             ..++.    .             .+..+++++|+|+.|++.+.+
T Consensus        20 ~~~l~~~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~p~~~v~gvD~s~~~l~~~~~   69 (218)
T 3mq2_A           20 FEQLRSQYDDVVLDVGTGDGKHP-------------YKVAR----Q-------------NPSRLVVALDADKSRMEKISA   69 (218)
T ss_dssp             HHHHHTTSSEEEEEESCTTCHHH-------------HHHHH----H-------------CTTEEEEEEESCGGGGHHHHH
T ss_pred             HHHhhccCCCEEEEecCCCCHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHHHHHHH
Confidence            34444678889999999999988             43333    1             025689999999999986544


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee---hh--hccccHHHHHHH
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GI--RNVTRIDKALSE  190 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~---~l--~~~~~~~~~l~~  190 (241)
                      .+...                     ....+.+  ++++.++|+..+|.+.+. |.|....   ..  ++++++..++++
T Consensus        70 ~a~~~---------------------~~~~~~~--~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~  125 (218)
T 3mq2_A           70 KAAAK---------------------PAKGGLP--NLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRG  125 (218)
T ss_dssp             HHTSC---------------------GGGTCCT--TEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHH
T ss_pred             HHHHh---------------------hhhcCCC--ceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHH
Confidence            43300                     0022332  789999999998876655 6665332   22  267788999999


Q ss_pred             HHHhccCCcEEEEEec-----------------CH----HHHHHHHHHCCCceEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEF-----------------SH----EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~-----------------~~----~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++++|||||++++...                 ..    +.+...++++||++.+...+.
T Consensus       126 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~~  185 (218)
T 3mq2_A          126 MAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYLE  185 (218)
T ss_dssp             HHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeeccc
Confidence            9999999999998531                 11    458889999999998887653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.52  E-value=1.6e-13  Score=114.52  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=99.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .             .+...++++|+++.+++.+++++.   
T Consensus        40 ~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~p~~~v~gvD~s~~~l~~a~~~~~---   86 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFV-------------SGMAK----Q-------------NPDINYIGIDIQKSVLSYALDKVL---   86 (214)
T ss_dssp             SCCCEEEEESCTTSHHH-------------HHHHH----H-------------CTTSEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCeEEEEccCcCHHH-------------HHHHH----H-------------CCCCCEEEEEcCHHHHHHHHHHHH---
Confidence            45679999999999988             43333    1             024689999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccc--------cHHHHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--------RIDKALSEA  191 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~--------~~~~~l~~~  191 (241)
                                            ..++.  ++.++++|+..++  ++.++||+|++++...+..        ....+++.+
T Consensus        87 ----------------------~~~~~--~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  142 (214)
T 1yzh_A           87 ----------------------EVGVP--NIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTF  142 (214)
T ss_dssp             ----------------------HHCCS--SEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHH
T ss_pred             ----------------------HcCCC--CEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHH
Confidence                                  44543  7899999998876  5667899999886543222        136899999


Q ss_pred             HHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420         192 YRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~  226 (241)
                      .++|+|||.+++..-..   +.+.+.++++||..+...
T Consensus       143 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          143 KRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             HHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence            99999999999876443   667788899999887665

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.51  E-value=2e-13  Score=123.63  Aligned_cols=139  Identities=13%  Similarity=0.136  Sum_probs=104.7

Q ss_pred             HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ..+++.+. ..+..+|||||||+|..+             ..++.       ..          +..+++++|+ +.+++
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~-------~~----------p~~~~~~~D~-~~~~~  238 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATV-------------AAIAA-------HY----------PTIKGVNFDL-PHVIS  238 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHH-------------HHHHH-------HC----------TTCEEEEEEC-HHHHT
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHH-------------HHHHH-------HC----------CCCeEEEecC-HHHHH
Confidence            44555555 567789999999999988             44443       11          2456899999 66654


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~  189 (241)
                      .+++                                 .+++++..+|+.+ |.+..  |+|++..++|++++.  .++|+
T Consensus       239 ~a~~---------------------------------~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~  282 (364)
T 3p9c_A          239 EAPQ---------------------------------FPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLK  282 (364)
T ss_dssp             TCCC---------------------------------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHH
T ss_pred             hhhh---------------------------------cCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHH
Confidence            4321                                 1368999999887 66643  999999999998654  58999


Q ss_pred             HHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHS  237 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  237 (241)
                      ++++.|||||++++.+...                                ++|+++++++||+.+++.....+.. ++.
T Consensus       283 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie  361 (364)
T 3p9c_A          283 NCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAW-AIE  361 (364)
T ss_dssp             HHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEE-EEE
T ss_pred             HHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceE-EEE
Confidence            9999999999999976431                                7899999999999999998865543 433


Q ss_pred             ee
Q psy1420         238 GF  239 (241)
Q Consensus       238 ~~  239 (241)
                      .+
T Consensus       362 ~~  363 (364)
T 3p9c_A          362 FT  363 (364)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.51  E-value=1.1e-13  Score=118.06  Aligned_cols=133  Identities=14%  Similarity=0.189  Sum_probs=107.0

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+...+...++.+|||+|||+|..+             ..++..++                +..+++++|+++.+++.
T Consensus        83 ~~i~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~~D~~~~~~~~  133 (255)
T 3mb5_A           83 ALIVAYAGISPGDFIVEAGVGSGALT-------------LFLANIVG----------------PEGRVVSYEIREDFAKL  133 (255)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEECSCHHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEecCCchHHH-------------HHHHHHhC----------------CCeEEEEEecCHHHHHH
Confidence            45667777888999999999999988             44444111                35689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      +++++.                         ..+++ .++++...|+.+. .+.++||+|++     +.+++..+++++.
T Consensus       134 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~-~~~~~~D~v~~-----~~~~~~~~l~~~~  181 (255)
T 3mb5_A          134 AWENIK-------------------------WAGFD-DRVTIKLKDIYEG-IEEENVDHVIL-----DLPQPERVVEHAA  181 (255)
T ss_dssp             HHHHHH-------------------------HHTCT-TTEEEECSCGGGC-CCCCSEEEEEE-----CSSCGGGGHHHHH
T ss_pred             HHHHHH-------------------------HcCCC-CceEEEECchhhc-cCCCCcCEEEE-----CCCCHHHHHHHHH
Confidence            999987                         55554 4589999998864 55678999997     4567788999999


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCC--CceEEEE
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAG--FQYVTYE  226 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~G--f~~~~~~  226 (241)
                      ++|+|||++++.....   .++.+.+++.|  |..++..
T Consensus       182 ~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          182 KALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             HHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred             HHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEE
Confidence            9999999999987665   67788999999  8776654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.50  E-value=8.6e-14  Score=120.90  Aligned_cols=132  Identities=14%  Similarity=0.178  Sum_probs=102.7

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+.+.+...++.+|||+|||+|..+             ..++..++                +..+++++|+++.+++.+
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~~~a  151 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMS-------------SYILYALN----------------GKGTLTVVERDEDNLKKA  151 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHH-------------HHHHHHHT----------------TSSEEEEECSCHHHHHHH
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHH-------------HHHHHHcC----------------CCCEEEEEECCHHHHHHH
Confidence            5556667788899999999999988             44433110                256899999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      ++++.                         .. +.  +++++..+|+.. +.++++||+|++     +.+++..+++++.
T Consensus       152 ~~~~~-------------------------~~~g~--~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~~~~~~l~~~~  198 (275)
T 1yb2_A          152 MDNLS-------------------------EFYDI--GNVRTSRSDIAD-FISDQMYDAVIA-----DIPDPWNHVQKIA  198 (275)
T ss_dssp             HHHHH-------------------------TTSCC--TTEEEECSCTTT-CCCSCCEEEEEE-----CCSCGGGSHHHHH
T ss_pred             HHHHH-------------------------hcCCC--CcEEEEECchhc-cCcCCCccEEEE-----cCcCHHHHHHHHH
Confidence            99887                         44 42  368899999887 555678999997     5678889999999


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ++|||||++++.+...   +++.+.++++||..++...
T Consensus       199 ~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          199 SMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             HTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred             HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence            9999999999988776   5667778889998877765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.50  E-value=1.6e-13  Score=116.76  Aligned_cols=134  Identities=17%  Similarity=0.228  Sum_probs=106.5

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..++..+...++.+|||+|||+|..+             ..++..++                +...++++|+++.+++.
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~~D~~~~~~~~  136 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLT-------------LFLARAVG----------------EKGLVESYEARPHHLAQ  136 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEEESCHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHH
Confidence            45666777788999999999999988             44444111                25689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      +++++.                         .. +.  +++++...|+.+.++++++||+|++     +.+++..+++++
T Consensus       137 a~~~~~-------------------------~~~g~--~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~  184 (258)
T 2pwy_A          137 AERNVR-------------------------AFWQV--ENVRFHLGKLEEAELEEAAYDGVAL-----DLMEPWKVLEKA  184 (258)
T ss_dssp             HHHHHH-------------------------HHCCC--CCEEEEESCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHH
T ss_pred             HHHHHH-------------------------HhcCC--CCEEEEECchhhcCCCCCCcCEEEE-----CCcCHHHHHHHH
Confidence            999876                         43 32  4789999999887777778999997     456778999999


Q ss_pred             HHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420         192 YRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .++|+|||++++.....   .++.+.+++.||..++...
T Consensus       185 ~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          185 ALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             HHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred             HHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEE
Confidence            99999999999988776   4566777889998766554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.50  E-value=9.3e-14  Score=114.63  Aligned_cols=134  Identities=16%  Similarity=0.216  Sum_probs=99.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.    ..             +..+++++|+++.+++.+++++.    
T Consensus        65 ~~~~vLDiG~G~G~~~-------------~~l~~----~~-------------~~~~v~~vD~s~~~~~~a~~~~~----  110 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPG-------------IPLSI----VR-------------PEAHFTLLDSLGKRVRFLRQVQH----  110 (207)
T ss_dssp             CSSEEEEETCTTTTTH-------------HHHHH----HC-------------TTSEEEEEESCHHHHHHHHHHHH----
T ss_pred             CCCeEEEECCCCCHHH-------------HHHHH----HC-------------CCCEEEEEeCCHHHHHHHHHHHH----
Confidence            4779999999999998             43333    10             25689999999999999999887    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                           ..++.  ++++.++|+...+ +.++||+|++..    +.++..+++.+.++|+|||+++
T Consensus       111 ---------------------~~~~~--~v~~~~~d~~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~  162 (207)
T 1jsx_A          111 ---------------------ELKLE--NIEPVQSRVEEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFY  162 (207)
T ss_dssp             ---------------------HTTCS--SEEEEECCTTTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEE
T ss_pred             ---------------------HcCCC--CeEEEecchhhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEE
Confidence                                 44544  4889999998875 356899999743    4678899999999999999998


Q ss_pred             EEec--CHHHHHHHHHHCCCceEEEEEec----CceeEEEeeec
Q psy1420         203 CLEF--SHEEFKSMIESAGFQYVTYENLT----FGVVAIHSGFK  240 (241)
Q Consensus       203 i~~~--~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~~~~  240 (241)
                      +..-  ..+++.++++  ||..++.....    .|...++..+|
T Consensus       163 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k  204 (207)
T 1jsx_A          163 ALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKA  204 (207)
T ss_dssp             EEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEE
T ss_pred             EEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEe
Confidence            8753  3366666665  99887755332    34445444443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.50  E-value=1.3e-13  Score=124.82  Aligned_cols=141  Identities=14%  Similarity=0.195  Sum_probs=106.8

Q ss_pred             HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ..+++.+. ..++.+|||+|||+|..+             ..++.    .             .+...++++|+ +.+++
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~----~-------------~~~~~~~~~D~-~~~~~  246 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNL-------------ELIIS----K-------------YPLIKGINFDL-PQVIE  246 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHH-------------HHHHH----H-------------CTTCEEEEEEC-HHHHT
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHH-------------HHHHH----H-------------CCCCeEEEeCh-HHHHH
Confidence            44555554 566789999999999988             44433    0             02456788899 77775


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~  189 (241)
                      .+++                               .  +++++..+|+.. +.+.  +|+|++..++|+++++.  .+|+
T Consensus       247 ~a~~-------------------------------~--~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~  290 (372)
T 1fp1_D          247 NAPP-------------------------------L--SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLS  290 (372)
T ss_dssp             TCCC-------------------------------C--TTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHH
T ss_pred             hhhh-------------------------------c--CCCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHH
Confidence            4431                               1  258899999887 5543  99999999999999887  9999


Q ss_pred             HHHHhccCCcEEEEEecC-------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEee
Q psy1420         190 EAYRVLKPGGRFLCLEFS-------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSG  238 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~-------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~  238 (241)
                      +++++|||||++++.+..                               .+++.++++++||+.+++.....|...++.+
T Consensus       291 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~  370 (372)
T 1fp1_D          291 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEF  370 (372)
T ss_dssp             HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEE
T ss_pred             HHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEE
Confidence            999999999999987421                               1788999999999999998866662266666


Q ss_pred             ec
Q psy1420         239 FK  240 (241)
Q Consensus       239 ~~  240 (241)
                      +|
T Consensus       371 ~~  372 (372)
T 1fp1_D          371 YK  372 (372)
T ss_dssp             EC
T ss_pred             eC
Confidence            53

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.49  E-value=4.1e-13  Score=118.89  Aligned_cols=141  Identities=11%  Similarity=0.073  Sum_probs=102.4

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      ..+..+++.+|||+|||+|..+             ..++.       ..          ...+++++|+++.+++.|+++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~t-------------a~~lA-------~~----------~ga~V~gIDis~~~l~~Ar~~  165 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLT-------------GILLS-------HV----------YGMRVNVVEIEPDIAELSRKV  165 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHH-------------HHHHH-------HT----------TCCEEEEEESSHHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHH-------------HHHHH-------Hc----------cCCEEEEEECCHHHHHHHHHH
Confidence            4567789999999999999876             11111       11          357899999999999999999


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK  196 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk  196 (241)
                      +.                         +.++  .++++.++|+.+++  .++||+|++...   .+++.++++++.++||
T Consensus       166 ~~-------------------------~~gl--~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~Lk  213 (298)
T 3fpf_A          166 IE-------------------------GLGV--DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVD  213 (298)
T ss_dssp             HH-------------------------HHTC--CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCC
T ss_pred             HH-------------------------hcCC--CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcC
Confidence            88                         6666  37999999998876  578999997654   5788999999999999


Q ss_pred             CCcEEEEEecCHH------HHHHHHHHCCCceEEEEEecCceeE-EEeeec
Q psy1420         197 PGGRFLCLEFSHE------EFKSMIESAGFQYVTYENLTFGVVA-IHSGFK  240 (241)
Q Consensus       197 pgG~l~i~~~~~~------~~~~~l~~~Gf~~~~~~~~~~~~~~-~~~~~~  240 (241)
                      |||++++.+....      .... ....||+......-...+.+ +..++|
T Consensus       214 PGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~v~N~vv~a~k  263 (298)
T 3fpf_A          214 TETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGKVNNTSVLVFK  263 (298)
T ss_dssp             TTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTTCCCEEEEEEE
T ss_pred             CCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCCcCcEEEEEEc
Confidence            9999999775440      0000 13348876655544443333 445554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.49  E-value=1e-13  Score=113.71  Aligned_cols=134  Identities=13%  Similarity=0.165  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.+++++.  
T Consensus        20 ~~~~~~vLDlGcG~G~~~-------------~~l~~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~--   68 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDT-------------AFLASLVG----------------ENGRVFGFDIQDKAIANTTKKLT--   68 (197)
T ss_dssp             CCTTCEEEESCCTTSHHH-------------HHHHHHHC----------------TTCEEEEECSCHHHHHHHHHHHH--
T ss_pred             CCCCCEEEEcCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHH--
Confidence            457789999999999988             44443110                23589999999999999999987  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhh---------ccccHHHHHHH
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIR---------NVTRIDKALSE  190 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~---------~~~~~~~~l~~  190 (241)
                                             ..++. ++++++++|+...+ ...++||+|++...+.         ...+...++++
T Consensus        69 -----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (197)
T 3eey_A           69 -----------------------DLNLI-DRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSK  124 (197)
T ss_dssp             -----------------------HTTCG-GGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHH
T ss_pred             -----------------------HcCCC-CCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHH
Confidence                                   54543 47899999988775 4557899999887551         12245689999


Q ss_pred             HHHhccCCcEEEEEecCH--------HHHHHHHH---HCCCceEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEFSH--------EEFKSMIE---SAGFQYVTYENLT  229 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~--------~~~~~~l~---~~Gf~~~~~~~~~  229 (241)
                      +.++|||||++++..+..        ..+.++++   ..+|.+..+..++
T Consensus       125 ~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~  174 (197)
T 3eey_A          125 AMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN  174 (197)
T ss_dssp             HHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred             HHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence            999999999999987542        44455554   4567777766554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.49  E-value=2.4e-13  Score=116.99  Aligned_cols=137  Identities=9%  Similarity=0.123  Sum_probs=103.8

Q ss_pred             HHhhcCCC-CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          35 FIDRLGPT-HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        35 ~~~~l~~~-~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      +...+..+ ++.+|||+|||+|..+             ..++.        .          ....++++|+++.+++.+
T Consensus        40 l~~~~~~~~~~~~vLDlG~G~G~~~-------------~~la~--------~----------~~~~v~gvDi~~~~~~~a   88 (259)
T 3lpm_A           40 LAKFSYLPIRKGKIIDLCSGNGIIP-------------LLLST--------R----------TKAKIVGVEIQERLADMA   88 (259)
T ss_dssp             HHHHCCCCSSCCEEEETTCTTTHHH-------------HHHHT--------T----------CCCEEEEECCSHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHH-------------HHHHH--------h----------cCCcEEEEECCHHHHHHH
Confidence            33444556 7889999999999988             33332        1          123899999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc----------
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV----------  181 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~----------  181 (241)
                      ++++.                         ..++. ++++++++|+.+.+  ++.++||+|+++-.....          
T Consensus        89 ~~n~~-------------------------~~~~~-~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~  142 (259)
T 3lpm_A           89 KRSVA-------------------------YNQLE-DQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNE  142 (259)
T ss_dssp             HHHHH-------------------------HTTCT-TTEEEECSCGGGGGGTSCTTCEEEEEECCCC-------------
T ss_pred             HHHHH-------------------------HCCCc-ccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCch
Confidence            99988                         55555 57999999998875  446799999996333211          


Q ss_pred             ----------ccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420         182 ----------TRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       182 ----------~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~  228 (241)
                                .+...+++.+.++|||||+++++....  .++...+++.||....+..+
T Consensus       143 ~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~v  201 (259)
T 3lpm_A          143 HFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFV  201 (259)
T ss_dssp             ----------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEEEEe
Confidence                      234689999999999999999865332  78889999999998877765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.49  E-value=1.1e-13  Score=120.67  Aligned_cols=138  Identities=11%  Similarity=-0.013  Sum_probs=95.8

Q ss_pred             hHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhh
Q psy1420           4 PMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIA   83 (241)
Q Consensus         4 ~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (241)
                      ...+.|+.+++.|..++....   ...+.+.+++.+...++.+|||+|||+|..+             ..++.       
T Consensus         9 s~a~~wd~~a~~f~~~~~~~~---~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a-------------~~La~-------   65 (261)
T 3iv6_A            9 SKAEAWELIGNQFWTIGRVAA---RPSDRENDIFLENIVPGSTVAVIGASTRFLI-------------EKALE-------   65 (261)
T ss_dssp             TTHHHHHTTTTHHHHTSCGGG---SCCHHHHHHHTTTCCTTCEEEEECTTCHHHH-------------HHHHH-------
T ss_pred             hhhhHHHHHHHHHHHHhhccc---cHHHHHHHHHhcCCCCcCEEEEEeCcchHHH-------------HHHHh-------
Confidence            345667777766655422110   0345667778888888999999999999988             44444       


Q ss_pred             cCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC
Q psy1420          84 GQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP  163 (241)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  163 (241)
                                  ....++++|+|+.|++.+++++.                         ...   -..++...+.....
T Consensus        66 ------------~g~~V~gvD~S~~ml~~Ar~~~~-------------------------~~~---v~~~~~~~~~~~~~  105 (261)
T 3iv6_A           66 ------------RGASVTVFDFSQRMCDDLAEALA-------------------------DRC---VTIDLLDITAEIPK  105 (261)
T ss_dssp             ------------TTCEEEEEESCHHHHHHHHHHTS-------------------------SSC---CEEEECCTTSCCCG
T ss_pred             ------------cCCEEEEEECCHHHHHHHHHHHH-------------------------hcc---ceeeeeeccccccc
Confidence                        35689999999999999998876                         111   01222222221011


Q ss_pred             CCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEe
Q psy1420         164 IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       164 ~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ...++||+|+++.+++++.  +...++.++.++| |||+++++.
T Consensus       106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence            1246899999999999864  4568999999999 999999864

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.49  E-value=2.5e-13  Score=113.86  Aligned_cols=128  Identities=11%  Similarity=0.085  Sum_probs=97.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .   .          +...++|+|+++.+++.+.+++.   
T Consensus        37 ~~~~~vLDiGcG~G~~~-------------~~la~----~---~----------p~~~v~giD~s~~~l~~a~~~~~---   83 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFI-------------SGMAK----Q---N----------PDINYIGIELFKSVIVTAVQKVK---   83 (213)
T ss_dssp             SCCCEEEEECCTTSHHH-------------HHHHH----H---C----------TTSEEEEECSCHHHHHHHHHHHH---
T ss_pred             CCCceEEEEecCCCHHH-------------HHHHH----H---C----------CCCCEEEEEechHHHHHHHHHHH---
Confidence            35678999999999988             43333    1   0          35689999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcccc--------HHHHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTR--------IDKALSEA  191 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~--------~~~~l~~~  191 (241)
                                            ..++.  +++++++|+..++  ++.+++|.|++.+.-.+...        ...+++++
T Consensus        84 ----------------------~~~~~--nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~  139 (213)
T 2fca_A           84 ----------------------DSEAQ--NVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKY  139 (213)
T ss_dssp             ----------------------HSCCS--SEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHH
T ss_pred             ----------------------HcCCC--CEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHH
Confidence                                  55544  6899999988765  55678999987654322211        36889999


Q ss_pred             HHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420         192 YRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~  226 (241)
                      .++|||||.+++.+-..   +.+.+.+++.||......
T Consensus       140 ~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~  177 (213)
T 2fca_A          140 EEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVS  177 (213)
T ss_dssp             HHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccccc
Confidence            99999999999876554   566778888999876543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.48  E-value=2e-13  Score=122.57  Aligned_cols=132  Identities=19%  Similarity=0.223  Sum_probs=101.8

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..++.    .   .          +..+++++|+ +.+++.+++     
T Consensus       186 ~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~a~~-----  229 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTA-------------KIICE----T---F----------PKLKCIVFDR-PQVVENLSG-----  229 (352)
T ss_dssp             HTTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHTTCCC-----
T ss_pred             cccCceEEEeCCCccHHH-------------HHHHH----H---C----------CCCeEEEeeC-HHHHhhccc-----
Confidence            356679999999999988             44433    0   0          2457999999 887765432     


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccC-
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP-  197 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~Lkp-  197 (241)
                                                .  +++++..+|+.+ +.+  .||+|++..++|++++..  ++|++++++||| 
T Consensus       230 --------------------------~--~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~  278 (352)
T 1fp2_A          230 --------------------------S--NNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTND  278 (352)
T ss_dssp             --------------------------B--TTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred             --------------------------C--CCcEEEeccccC-CCC--CccEEEeehhhccCCHHHHHHHHHHHHHhCCCC
Confidence                                      0  248899999876 444  399999999999999887  999999999999 


Q ss_pred             --CcEEEEEecC------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         198 --GGRFLCLEFS------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       198 --gG~l~i~~~~------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                        ||++++.+..                              .++|.++++++||+.+++... .|...++.+++
T Consensus       279 ~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~  352 (352)
T 1fp2_A          279 GKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPL-TGFLSLIEIYP  352 (352)
T ss_dssp             GCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEE-ETTEEEEEEEC
T ss_pred             CCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEec-CCCcEEEEEeC
Confidence              9999987531                              168899999999999988874 45566666653

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.47  E-value=2.9e-13  Score=119.35  Aligned_cols=125  Identities=18%  Similarity=0.175  Sum_probs=93.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                  .....++++|+++.+++.++++......
T Consensus        34 ~~~~VLDlGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s~~~l~~a~~~~~~~~~   82 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDL-------------LKWKK------------------GRINKLVCTDIADVSVKQCQQRYEDMKN   82 (313)
T ss_dssp             -CCEEEEETCTTTTTH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHH-------------HHHHh------------------cCCCEEEEEeCCHHHHHHHHHHHHHhhh
Confidence            6779999999999988             33332                  1345899999999999999988751000


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CC--CCceeEEeeeehhhcc----ccHHHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IE--SDSYSAYTIAFGIRNV----TRIDKALSEAY  192 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~~D~V~~~~~l~~~----~~~~~~l~~~~  192 (241)
                                        ......  ..++.++++|+...+    ++  .++||+|++++++|+.    +++..+++++.
T Consensus        83 ------------------~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~  142 (313)
T 3bgv_A           83 ------------------RRDSEY--IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC  142 (313)
T ss_dssp             ------------------SSCC-C--CCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHH
T ss_pred             ------------------cccccc--cceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHH
Confidence                              000001  136889999998875    43  3589999999999887    34579999999


Q ss_pred             HhccCCcEEEEEecCHHHHHHHHHHC
Q psy1420         193 RVLKPGGRFLCLEFSHEEFKSMIESA  218 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~~~~~~~l~~~  218 (241)
                      ++|||||++++..+...++.+.+..+
T Consensus       143 ~~LkpgG~li~~~~~~~~l~~~~~~~  168 (313)
T 3bgv_A          143 ERLSPGGYFIGTTPNSFELIRRLEAS  168 (313)
T ss_dssp             TTEEEEEEEEEEEECHHHHHHHHTTS
T ss_pred             HHhCCCcEEEEecCChHHHHHHHHhh
Confidence            99999999999999887776666544

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.46  E-value=4.6e-13  Score=108.15  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             ecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC---CCCceeEEeeeehhh
Q psy1420         103 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI---ESDSYSAYTIAFGIR  179 (241)
Q Consensus       103 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~V~~~~~l~  179 (241)
                      +|+|+.|++.++++..                               .++++..+|+..++.   ++++||+|+++.+++
T Consensus        26 vD~s~~ml~~a~~~~~-------------------------------~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~   74 (176)
T 2ld4_A           26 VEALKGLVDKLQALTG-------------------------------NEGRVSVENIKQLLQSAHKESSFDIILSGLVPG   74 (176)
T ss_dssp             HHHHHHHHHHHHHHTT-------------------------------TTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred             eeCCHHHHHHHHHhcc-------------------------------cCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence            8899999999988765                               247889999988876   678999999999999


Q ss_pred             cc-ccHHHHHHHHHHhccCCcEEEEEec------------CHHHHHHHHHHCCCceEEEEE
Q psy1420         180 NV-TRIDKALSEAYRVLKPGGRFLCLEF------------SHEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       180 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~------------~~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ++ +++..++++++++|||||++++...            +.+++.++++++|| +. +..
T Consensus        75 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~-~~~  133 (176)
T 2ld4_A           75 STTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE-VKE  133 (176)
T ss_dssp             CCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE-EEE
T ss_pred             hcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE-eec
Confidence            99 9999999999999999999998542            14789999999999 44 444

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.46  E-value=1.2e-12  Score=112.03  Aligned_cols=147  Identities=16%  Similarity=0.090  Sum_probs=101.4

Q ss_pred             HHHHhhc---CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          33 DIFIDRL---GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        33 ~~~~~~l---~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ..++..+   ..+++.+|||+|||+|.++             ..++..++                ....++++|+++.+
T Consensus        63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t-------------~~la~~v~----------------~~G~V~avD~s~~~  113 (232)
T 3id6_C           63 GAILKGLKTNPIRKGTKVLYLGAASGTTI-------------SHVSDIIE----------------LNGKAYGVEFSPRV  113 (232)
T ss_dssp             HHHHTTCSCCSCCTTCEEEEETCTTSHHH-------------HHHHHHHT----------------TTSEEEEEECCHHH
T ss_pred             HHHHhhhhhcCCCCCCEEEEEeecCCHHH-------------HHHHHHhC----------------CCCEEEEEECcHHH
Confidence            4444444   4789999999999999988             55544222                35689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDK  186 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~  186 (241)
                      ++.+.+.+.                         +.    .++.++.+|+....   ...++||+|++....   ++...
T Consensus       114 l~~l~~~a~-------------------------~r----~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~  161 (232)
T 3id6_C          114 VRELLLVAQ-------------------------RR----PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTD  161 (232)
T ss_dssp             HHHHHHHHH-------------------------HC----TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHH
T ss_pred             HHHHHHHhh-------------------------hc----CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHH
Confidence            766554443                         11    26888899987643   124689999987543   44444


Q ss_pred             HH-HHHHHhccCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420         187 AL-SEAYRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT--FGVVAIHSGFK  240 (241)
Q Consensus       187 ~l-~~~~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~  240 (241)
                      .+ ..+.+.|||||+|++.....            ++..+.|+++||++.+..++.  .--+.++++++
T Consensus       162 il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~  230 (232)
T 3id6_C          162 IAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY  230 (232)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred             HHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence            44 55666999999999863211            566778889999999988873  23456666654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.46  E-value=1.7e-13  Score=124.80  Aligned_cols=139  Identities=13%  Similarity=0.093  Sum_probs=100.7

Q ss_pred             HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420           8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK   87 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (241)
                      +|+..+..|+..+..........+.+.+.+.....++.+|||+|||+|.++             ..++.           
T Consensus        28 yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls-------------~~la~-----------   83 (376)
T 3r0q_C           28 YFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA-------------IWSAQ-----------   83 (376)
T ss_dssp             CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHH-------------HHHHH-----------
T ss_pred             HHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHH-------------HHHHh-----------
Confidence            445555444432212222223445666666666778889999999999988             43333           


Q ss_pred             cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420          88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD  167 (241)
Q Consensus        88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  167 (241)
                             ....+++++|++ .+++.+++++.                         ..++. ++++++++|+.+.+.+ +
T Consensus        84 -------~g~~~V~gvD~s-~~~~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~-~  128 (376)
T 3r0q_C           84 -------AGARKVYAVEAT-KMADHARALVK-------------------------ANNLD-HIVEVIEGSVEDISLP-E  128 (376)
T ss_dssp             -------TTCSEEEEEESS-TTHHHHHHHHH-------------------------HTTCT-TTEEEEESCGGGCCCS-S
T ss_pred             -------cCCCEEEEEccH-HHHHHHHHHHH-------------------------HcCCC-CeEEEEECchhhcCcC-C
Confidence                   123489999999 99999999887                         55655 5799999999998776 7


Q ss_pred             ceeEEeeeehhhcc---ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         168 SYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       168 ~~D~V~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      +||+|++....+..   ..+..++..+.++|||||++++..
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            89999996644433   567889999999999999998643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.44  E-value=8e-13  Score=114.66  Aligned_cols=134  Identities=14%  Similarity=0.169  Sum_probs=104.7

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..++..+...++.+|||+|||+|..+             ..++..++                +...++++|+++.+++.
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~~~  152 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMC-------------AVLARAVG----------------SSGKVFAYEKREEFAKL  152 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHTT----------------TTCEEEEECCCHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHH-------------HHHHHHhC----------------CCcEEEEEECCHHHHHH
Confidence            35566677788899999999999988             44443111                25689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      +++++.                         ..++. +++++...|+.+. ++.++||+|++     +.+++..+++++.
T Consensus       153 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~-~~~~~~D~V~~-----~~~~~~~~l~~~~  200 (277)
T 1o54_A          153 AESNLT-------------------------KWGLI-ERVTIKVRDISEG-FDEKDVDALFL-----DVPDPWNYIDKCW  200 (277)
T ss_dssp             HHHHHH-------------------------HTTCG-GGEEEECCCGGGC-CSCCSEEEEEE-----CCSCGGGTHHHHH
T ss_pred             HHHHHH-------------------------HcCCC-CCEEEEECCHHHc-ccCCccCEEEE-----CCcCHHHHHHHHH
Confidence            999887                         44442 3688899998776 45568999997     4567789999999


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ++|+|||++++.....   .++.+.+++.||..++...
T Consensus       201 ~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          201 EALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             HHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred             HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEE
Confidence            9999999999988765   5667788889998766554

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.44  E-value=3.9e-13  Score=119.07  Aligned_cols=117  Identities=9%  Similarity=0.120  Sum_probs=84.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                  .....++|+|+|+.|++.|+++..    
T Consensus        48 ~~~~VLDlGCG~G~~l-------------~~~~~------------------~~~~~v~GiD~S~~~l~~A~~~~~----   92 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADL-------------EKYFY------------------GEIALLVATDPDADAIARGNERYN----   92 (302)
T ss_dssp             SCCEEEETTCTTTTTH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH----
T ss_pred             CCCeEEEEecCCcHhH-------------HHHHh------------------cCCCeEEEEECCHHHHHHHHHHHH----
Confidence            5779999999999866             33322                  024579999999999999998876    


Q ss_pred             ccccccccceecceeeeeeccccCCC----CCCeeEEeccc------CCC--CCCCCceeEEeeeehhhcc---ccHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIP----NPRLRFLEANA------EEL--PIESDSYSAYTIAFGIRNV---TRIDKA  187 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~------~~~--~~~~~~~D~V~~~~~l~~~---~~~~~~  187 (241)
                                           ..+..    ...+++.+.|+      ..+  +.+.++||+|+|.+++|+.   .+...+
T Consensus        93 ---------------------~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~  151 (302)
T 2vdw_A           93 ---------------------KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATV  151 (302)
T ss_dssp             ---------------------HHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHH
T ss_pred             ---------------------hccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHH
Confidence                                 21110    00245666665      222  2345789999999999864   456899


Q ss_pred             HHHHHHhccCCcEEEEEecCHHHHHHHH
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSHEEFKSMI  215 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~~~~~~~l  215 (241)
                      +++++++|||||++++.+.....+..++
T Consensus       152 l~~~~r~LkpGG~~i~~~~~~~~~~~~~  179 (302)
T 2vdw_A          152 MNNLSELTASGGKVLITTMDGDKLSKLT  179 (302)
T ss_dssp             HHHHHHHEEEEEEEEEEEECHHHHTTCC
T ss_pred             HHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence            9999999999999999887765554433

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.44  E-value=3.2e-13  Score=121.43  Aligned_cols=114  Identities=15%  Similarity=0.151  Sum_probs=91.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+.+.+...++.+|||+|||+|..+             ..++.                  ....+++++|+++ ++
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls-------------~~la~------------------~g~~~v~gvD~s~-~~   99 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILS-------------MFAAK------------------AGAKKVLGVDQSE-IL   99 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEESST-HH
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHH-------------HHHHH------------------cCCCEEEEEChHH-HH
Confidence            4566666666677889999999999987             33333                  1234799999997 99


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee---hhhccccHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GIRNVTRIDKA  187 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~---~l~~~~~~~~~  187 (241)
                      +.+++++.                         ..++. ++++++.+|+.+.+.+.++||+|++..   .+.+..++..+
T Consensus       100 ~~a~~~~~-------------------------~~~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~  153 (340)
T 2fyt_A          100 YQAMDIIR-------------------------LNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSV  153 (340)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHH
T ss_pred             HHHHHHHH-------------------------HcCCC-CcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHH
Confidence            99998887                         55554 579999999999888778999999876   45566778899


Q ss_pred             HHHHHHhccCCcEEE
Q psy1420         188 LSEAYRVLKPGGRFL  202 (241)
Q Consensus       188 l~~~~~~LkpgG~l~  202 (241)
                      +.++.++|||||+++
T Consensus       154 l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          154 LYAKNKYLAKGGSVY  168 (340)
T ss_dssp             HHHHHHHEEEEEEEE
T ss_pred             HHHHHhhcCCCcEEE
Confidence            999999999999987

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.44  E-value=2.8e-13  Score=114.95  Aligned_cols=131  Identities=20%  Similarity=0.269  Sum_probs=92.7

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCC-hHhHHHH---HHHH
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIP-NPRLRFL---EANA  117 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~~---~~~~  117 (241)
                      .++.+|||+|||+|..+             ..++.       ..          ....++|+|+| +.|++.|   ++++
T Consensus        23 ~~~~~vLDiGCG~G~~~-------------~~la~-------~~----------~~~~v~GvD~s~~~ml~~A~~A~~~~   72 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNI-------------YKLAI-------ND----------QNTFYIGIDPVKENLFDISKKIIKKP   72 (225)
T ss_dssp             TCSEEEEEETCTTSHHH-------------HHHHH-------TC----------TTEEEEEECSCCGGGHHHHHHHTSCG
T ss_pred             CCCCEEEEEeccCcHHH-------------HHHHH-------hC----------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence            56779999999999988             33331       01          35689999999 6677665   5555


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhh-----ccccHHHHHHHH
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIR-----NVTRIDKALSEA  191 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~-----~~~~~~~~l~~~  191 (241)
                      .                         +.+++  ++.+.++|+..+|.. .+.+|.|.+++...     ...+...+++++
T Consensus        73 ~-------------------------~~~~~--~v~~~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~  125 (225)
T 3p2e_A           73 S-------------------------KGGLS--NVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNV  125 (225)
T ss_dssp             G-------------------------GTCCS--SEEEECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHH
T ss_pred             H-------------------------HcCCC--CeEEEEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHH
Confidence            4                         44444  689999999988632 25666666654322     123446789999


Q ss_pred             HHhccCCcEEEEEe------------------cCH-----HHHHHHHHHCCCceEEEEEec
Q psy1420         192 YRVLKPGGRFLCLE------------------FSH-----EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       192 ~~~LkpgG~l~i~~------------------~~~-----~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++|||||++++..                  .+.     +++...++++||++...+.+.
T Consensus       126 ~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          126 ADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELD  186 (225)
T ss_dssp             HTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEEEEC
T ss_pred             HHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeeeecC
Confidence            99999999998821                  111     248899999999998887654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.44  E-value=1.2e-12  Score=112.70  Aligned_cols=125  Identities=22%  Similarity=0.215  Sum_probs=97.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..+..                   ...+++++|+++.+++.+++++.   
T Consensus       119 ~~~~~VLDiGcG~G~l~-------------~~la~-------------------~g~~v~gvDi~~~~v~~a~~n~~---  163 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLA-------------IAAEK-------------------LGGKALGVDIDPMVLPQAEANAK---  163 (254)
T ss_dssp             CTTCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCGGGHHHHHHHHH---
T ss_pred             CCCCEEEEecCCCcHHH-------------HHHHH-------------------hCCeEEEEECCHHHHHHHHHHHH---
Confidence            56789999999999988             43333                   23389999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++.   +++..+|+... .+.++||+|+++...+   .....+..+.++|||||++
T Consensus       164 ----------------------~~~~~---v~~~~~d~~~~-~~~~~fD~Vv~n~~~~---~~~~~l~~~~~~LkpgG~l  214 (254)
T 2nxc_A          164 ----------------------RNGVR---PRFLEGSLEAA-LPFGPFDLLVANLYAE---LHAALAPRYREALVPGGRA  214 (254)
T ss_dssp             ----------------------HTTCC---CEEEESCHHHH-GGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------------HcCCc---EEEEECChhhc-CcCCCCCEEEECCcHH---HHHHHHHHHHHHcCCCCEE
Confidence                                  44432   67788887652 3356899999875543   3568899999999999999


Q ss_pred             EEEecC---HHHHHHHHHHCCCceEEEEEecC
Q psy1420         202 LCLEFS---HEEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       202 ~i~~~~---~~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      ++....   .+++.+.++++||++++......
T Consensus       215 ils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~  246 (254)
T 2nxc_A          215 LLTGILKDRAPLVREAMAGAGFRPLEEAAEGE  246 (254)
T ss_dssp             EEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             EEEeeccCCHHHHHHHHHHCCCEEEEEeccCC
Confidence            987543   38899999999999988776543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.44  E-value=7.3e-13  Score=111.84  Aligned_cols=142  Identities=13%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+...++.+|||+|||+|.++             ..++..+|                ....++++|+++.+++.+.+.+
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~-------------~~la~~~g----------------~~~~v~gvD~s~~~i~~~~~~a  122 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTV-------------SHVSDIVG----------------PDGLVYAVEFSHRSGRDLINLA  122 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTCEEEEECCCHHHHHHHHHHH
T ss_pred             eecCCCCCEEEEEcccCCHHH-------------HHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHh
Confidence            445678889999999999988             44444111                2357999999999988887776


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                      .                         ..    .++.+..+|+...   +...++||+|++...  .......++.++.++
T Consensus       123 ~-------------------------~~----~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~  171 (233)
T 2ipx_A          123 K-------------------------KR----TNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTF  171 (233)
T ss_dssp             H-------------------------HC----TTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHH
T ss_pred             h-------------------------cc----CCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHH
Confidence            6                         21    3688999998873   444678999998544  122224558889999


Q ss_pred             ccCCcEEEEEecCH-------------HHHHHHHHHCCCceEEEEEecC--ceeEEEeeec
Q psy1420         195 LKPGGRFLCLEFSH-------------EEFKSMIESAGFQYVTYENLTF--GVVAIHSGFK  240 (241)
Q Consensus       195 LkpgG~l~i~~~~~-------------~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~~  240 (241)
                      |||||++++.....             ++ .++++++||++++......  ....++++++
T Consensus       172 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~~  231 (233)
T 2ipx_A          172 LRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTLEPYERDHAVVVGVY  231 (233)
T ss_dssp             EEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred             cCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEecCCccCCcEEEEEEe
Confidence            99999999854321             22 5788999999988766532  2344444443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.43  E-value=1.7e-12  Score=108.98  Aligned_cols=139  Identities=13%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +..+++.+|||+|||+|..+             ..++.    ..             ....++++|+|+.+++.+.+.+.
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~-------------~~la~----~~-------------~~~~V~gvD~s~~~l~~~~~~a~  102 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTV-------------SHLAD----IV-------------DEGIIYAVEYSAKPFEKLLELVR  102 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHH-------------HHHHH----HT-------------TTSEEEEECCCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcCCHHH-------------HHHHH----Hc-------------CCCEEEEEECCHHHHHHHHHHHh
Confidence            44578889999999999988             43333    11             13579999999998876665554


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                                               +.    .++.++.+|+...    +.. ++||+|++..  ........++++++++
T Consensus       103 -------------------------~~----~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~--~~~~~~~~~l~~~~r~  150 (210)
T 1nt2_A          103 -------------------------ER----NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI--AQKNQIEILKANAEFF  150 (210)
T ss_dssp             -------------------------HC----SSEEEECSCTTCGGGTTTTC-CCEEEEEECC--CSTTHHHHHHHHHHHH
T ss_pred             -------------------------cC----CCeEEEEcCCCCchhhcccc-cceeEEEEec--cChhHHHHHHHHHHHH
Confidence                                     11    2467777777663    333 7899999873  1112334568999999


Q ss_pred             ccCCcEEEEEec--------CHHHHH----HHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420         195 LKPGGRFLCLEF--------SHEEFK----SMIESAGFQYVTYENLT--FGVVAIHSGFK  240 (241)
Q Consensus       195 LkpgG~l~i~~~--------~~~~~~----~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~  240 (241)
                      |||||++++...        ..+++.    +.++++ |++++..+..  ..-+.+++++|
T Consensus       151 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          151 LKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             EEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             hCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence            999999998731        113331    237888 9999888773  22556667665

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.42  E-value=5.9e-13  Score=110.15  Aligned_cols=111  Identities=9%  Similarity=0.050  Sum_probs=91.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.++
T Consensus        65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~-------------~~la~-------------------~~~~v~~vD~~~~~~  112 (210)
T 3lbf_A           65 MVARMTELLELTPQSRVLEIGTGSGYQT-------------AILAH-------------------LVQHVCSVERIKGLQ  112 (210)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEEESCHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCCHHH-------------HHHHH-------------------hCCEEEEEecCHHHH
Confidence            3566677778888999999999999988             44444                   246799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         ..++.  ++++..+|+...+.+.++||+|++..+++++++      .
T Consensus       113 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~------~  159 (210)
T 3lbf_A          113 WQARRRLK-------------------------NLDLH--NVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT------A  159 (210)
T ss_dssp             HHHHHHHH-------------------------HTTCC--SEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT------H
T ss_pred             HHHHHHHH-------------------------HcCCC--ceEEEECCcccCCccCCCccEEEEccchhhhhH------H
Confidence            99999887                         44544  689999998886655678999999999988775      5


Q ss_pred             HHHhccCCcEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEF  206 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~  206 (241)
                      +.++|||||++++...
T Consensus       160 ~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          160 LMTQLDEGGILVLPVG  175 (210)
T ss_dssp             HHHTEEEEEEEEEEEC
T ss_pred             HHHhcccCcEEEEEEc
Confidence            8899999999998654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.42  E-value=1.8e-12  Score=113.10  Aligned_cols=128  Identities=14%  Similarity=0.202  Sum_probs=100.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCC-CceeecCChHhH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ-FPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~  110 (241)
                      +..+.+.+  +++.+|||+|||+|.++             ..++.                   ... +++++|+++.++
T Consensus       116 ~~~l~~~~--~~~~~VLDlgcG~G~~~-------------~~la~-------------------~~~~~V~~vD~s~~~~  161 (278)
T 2frn_A          116 RVRMAKVA--KPDELVVDMFAGIGHLS-------------LPIAV-------------------YGKAKVIAIEKDPYTF  161 (278)
T ss_dssp             HHHHHHHC--CTTCEEEETTCTTTTTH-------------HHHHH-------------------HTCCEEEEECCCHHHH
T ss_pred             HHHHHHhC--CCCCEEEEecccCCHHH-------------HHHHH-------------------hCCCEEEEEECCHHHH
Confidence            34444443  46789999999999998             44443                   122 699999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         ..++. .+++++++|+.+.+. .++||+|++...    .....++.+
T Consensus       162 ~~a~~n~~-------------------------~n~~~-~~v~~~~~D~~~~~~-~~~fD~Vi~~~p----~~~~~~l~~  210 (278)
T 2frn_A          162 KFLVENIH-------------------------LNKVE-DRMSAYNMDNRDFPG-ENIADRILMGYV----VRTHEFIPK  210 (278)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEECSCTTTCCC-CSCEEEEEECCC----SSGGGGHHH
T ss_pred             HHHHHHHH-------------------------HcCCC-ceEEEEECCHHHhcc-cCCccEEEECCc----hhHHHHHHH
Confidence            99999988                         55655 468999999998865 678999998533    344678899


Q ss_pred             HHHhccCCcEEEEEecCH---------HHHHHHHHHCCCceEE
Q psy1420         191 AYRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYVT  224 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~~  224 (241)
                      +.++|||||++++.+.+.         +.+.+.++++||.+..
T Consensus       211 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          211 ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             HHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             HHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            999999999999977653         7889999999998766

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.42  E-value=1.6e-12  Score=118.86  Aligned_cols=118  Identities=15%  Similarity=0.209  Sum_probs=93.3

Q ss_pred             HHHHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          31 WKDIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        31 ~~~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      +.+.+.+.+.  ..++.+|||+|||+|..+             ..++.                   ...+++++|+++.
T Consensus       219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~-------------~~la~-------------------~g~~V~gvDis~~  266 (381)
T 3dmg_A          219 LLEALQERLGPEGVRGRQVLDLGAGYGALT-------------LPLAR-------------------MGAEVVGVEDDLA  266 (381)
T ss_dssp             HHHHHHHHHCTTTTTTCEEEEETCTTSTTH-------------HHHHH-------------------TTCEEEEEESBHH
T ss_pred             HHHHHHHhhcccCCCCCEEEEEeeeCCHHH-------------HHHHH-------------------cCCEEEEEECCHH
Confidence            3444444432  346779999999999998             44444                   3458999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-----ccc
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTR  183 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-----~~~  183 (241)
                      +++.+++++.                         ..++.   ++++..|+...+.+.++||+|+++..+++     ..+
T Consensus       267 al~~A~~n~~-------------------------~~~~~---v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~  318 (381)
T 3dmg_A          267 SVLSLQKGLE-------------------------ANALK---AQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDV  318 (381)
T ss_dssp             HHHHHHHHHH-------------------------HTTCC---CEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHH
T ss_pred             HHHHHHHHHH-------------------------HcCCC---eEEEEcchhhccccCCCeEEEEECCchhhcccccHHH
Confidence            9999999987                         44433   78999999887766679999999988876     456


Q ss_pred             HHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ...+++++.++|||||+++++....
T Consensus       319 ~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          319 AQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             HHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            7899999999999999999986555

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.41  E-value=1.6e-12  Score=112.36  Aligned_cols=134  Identities=10%  Similarity=0.125  Sum_probs=102.6

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..++..+...++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.
T Consensus        89 ~~i~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~vD~~~~~~~~  139 (280)
T 1i9g_A           89 AQIVHEGDIFPGARVLEAGAGSGALT-------------LSLLRAVG----------------PAGQVISYEQRADHAEH  139 (280)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEECSCHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEcccccHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHH
Confidence            45666777788999999999999988             44443111                25689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeecccc-C-CCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-D-IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +++++.                         .. + +. +++++...|+.+.+.+.++||+|++     +.+++..++++
T Consensus       140 a~~~~~-------------------------~~~g~~~-~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~  188 (280)
T 1i9g_A          140 ARRNVS-------------------------GCYGQPP-DNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDA  188 (280)
T ss_dssp             HHHHHH-------------------------HHHTSCC-TTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHH
T ss_pred             HHHHHH-------------------------HhcCCCC-CcEEEEECchHhcCCCCCceeEEEE-----CCcCHHHHHHH
Confidence            998876                         33 2 22 4689999999888776778999997     45677789999


Q ss_pred             HHHhccCCcEEEEEecCHH---HHHHHHHH-CCCceEEEE
Q psy1420         191 AYRVLKPGGRFLCLEFSHE---EFKSMIES-AGFQYVTYE  226 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~~---~~~~~l~~-~Gf~~~~~~  226 (241)
                      +.++|+|||++++.....+   ++.+.+++ .||...+..
T Consensus       189 ~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~  228 (280)
T 1i9g_A          189 VSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAW  228 (280)
T ss_dssp             HHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEE
T ss_pred             HHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEE
Confidence            9999999999999887763   44445555 788655443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.41  E-value=4.7e-13  Score=120.63  Aligned_cols=114  Identities=12%  Similarity=0.137  Sum_probs=89.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.....++.+|||+|||+|.++             ..++.                  ....+++++|+|+ +++
T Consensus        55 ~~~i~~~~~~~~~~~VLDvGcG~G~~~-------------~~la~------------------~g~~~v~gvD~s~-~l~  102 (349)
T 3q7e_A           55 RNSMFHNRHLFKDKVVLDVGSGTGILC-------------MFAAK------------------AGARKVIGIECSS-ISD  102 (349)
T ss_dssp             HHHHHTCHHHHTTCEEEEESCTTSHHH-------------HHHHH------------------TTCSEEEEEECST-HHH
T ss_pred             HHHHHhccccCCCCEEEEEeccchHHH-------------HHHHH------------------CCCCEEEEECcHH-HHH
Confidence            344443333457789999999999988             44433                  1245899999995 999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh---hhccccHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG---IRNVTRIDKAL  188 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~---l~~~~~~~~~l  188 (241)
                      .+++++.                         ..++. ++++++.+|+.+.+.+.++||+|++...   +.+...+..++
T Consensus       103 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l  156 (349)
T 3q7e_A          103 YAVKIVK-------------------------ANKLD-HVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVL  156 (349)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHH
T ss_pred             HHHHHHH-------------------------HcCCC-CcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHH
Confidence            9999887                         55655 5699999999999888889999998654   44557889999


Q ss_pred             HHHHHhccCCcEEEE
Q psy1420         189 SEAYRVLKPGGRFLC  203 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i  203 (241)
                      ..+.++|||||+++.
T Consensus       157 ~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          157 HARDKWLAPDGLIFP  171 (349)
T ss_dssp             HHHHHHEEEEEEEES
T ss_pred             HHHHHhCCCCCEEcc
Confidence            999999999999863

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.41  E-value=9e-13  Score=118.58  Aligned_cols=131  Identities=18%  Similarity=0.240  Sum_probs=100.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|||+|||+|..+             ..++.    .   .          +...++++|+ +.+++.+++      
T Consensus       192 ~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~a~~------  234 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVT-------------KLIHE----I---F----------PHLKCTVFDQ-PQVVGNLTG------  234 (358)
T ss_dssp             HTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTSEEEEEEC-HHHHSSCCC------
T ss_pred             cCCCEEEEECCCcCHHH-------------HHHHH----H---C----------CCCeEEEecc-HHHHhhccc------
Confidence            45679999999999988             44443    1   0          2456889998 666643321      


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccC--
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP--  197 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~Lkp--  197 (241)
                                               .  +++++..+|+.. +.+  +||+|++..++|++++..  ++|++++++|+|  
T Consensus       235 -------------------------~--~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~  284 (358)
T 1zg3_A          235 -------------------------N--ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKG  284 (358)
T ss_dssp             -------------------------C--SSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGG
T ss_pred             -------------------------C--CCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCC
Confidence                                     1  258899999887 554  499999999999999877  999999999999  


Q ss_pred             -CcEEEEEecC-------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420         198 -GGRFLCLEFS-------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK  240 (241)
Q Consensus       198 -gG~l~i~~~~-------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  240 (241)
                       ||++++.+..                               .++|.++++++||+.+++... .|...++.+++
T Consensus       285 ~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~  358 (358)
T 1zg3_A          285 KDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPI-SGFKSLIEVYP  358 (358)
T ss_dssp             GGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEE-TTTEEEEEEEC
T ss_pred             CCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEec-CCCcEEEEEeC
Confidence             9999987531                               178999999999999998874 55556666543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.41  E-value=2.6e-14  Score=121.03  Aligned_cols=131  Identities=13%  Similarity=0.043  Sum_probs=99.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.+++++.   
T Consensus        77 ~~~~~vLD~gcG~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~~~~a~~~~~---  121 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNT-------------IQFAL-------------------TGMRVIAIDIDPVKIALARNNAE---  121 (241)
T ss_dssp             SCCSEEEETTCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             cCCCEEEECccccCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHHHH---
Confidence            36789999999999988             44444                   34689999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++. ++++++++|+...+ +.++||+|+++..+++..+....+.+++++|+|||.+
T Consensus       122 ----------------------~~~~~-~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~  177 (241)
T 3gdh_A          122 ----------------------VYGIA-DKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFE  177 (241)
T ss_dssp             ----------------------HTTCG-GGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHH
T ss_pred             ----------------------HcCCC-cCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCccee
Confidence                                  55553 36899999998876 4578999999998888887777888899999999996


Q ss_pred             EEEec---------------CHHHHHHHHHHCCCceEEEEEecCc
Q psy1420         202 LCLEF---------------SHEEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       202 ~i~~~---------------~~~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      ++...               ..+++..++...|...+........
T Consensus       178 i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~~~  222 (241)
T 3gdh_A          178 IFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNK  222 (241)
T ss_dssp             HHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEETTE
T ss_pred             HHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEehhhcCc
Confidence            54321               2266677777777655544444433

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.41  E-value=1.2e-12  Score=117.80  Aligned_cols=142  Identities=20%  Similarity=0.211  Sum_probs=111.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+.....+.++.+|||+|||+|..+             ..++...+                ....++|+|+++.++
T Consensus       191 la~~l~~~~~~~~~~~vLD~gcGsG~~~-------------ie~a~~~~----------------~~~~v~g~Di~~~~i  241 (354)
T 3tma_A          191 LAQALLRLADARPGMRVLDPFTGSGTIA-------------LEAASTLG----------------PTSPVYAGDLDEKRL  241 (354)
T ss_dssp             HHHHHHHHTTCCTTCCEEESSCTTSHHH-------------HHHHHHHC----------------TTSCEEEEESCHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCcCHHH-------------HHHHHhhC----------------CCceEEEEECCHHHH
Confidence            4456667777888899999999999988             44443110                246899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh--hcc------c
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI--RNV------T  182 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l--~~~------~  182 (241)
                      +.+++++.                         ..++.  ++++.+.|+..++.+...||+|+++-..  +..      .
T Consensus       242 ~~a~~n~~-------------------------~~g~~--~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~  294 (354)
T 3tma_A          242 GLAREAAL-------------------------ASGLS--WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFH  294 (354)
T ss_dssp             HHHHHHHH-------------------------HTTCT--TCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHH
T ss_pred             HHHHHHHH-------------------------HcCCC--ceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHH
Confidence            99999988                         56654  6899999999987766779999995332  211      2


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ....+++++.++|||||++++.+...+.++++++ .||+..+...+.
T Consensus       295 ~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~~~-~g~~~~~~~~l~  340 (354)
T 3tma_A          295 LYWDFLRGALALLPPGGRVALLTLRPALLKRALP-PGFALRHARVVE  340 (354)
T ss_dssp             HHHHHHHHHHHTSCTTCEEEEEESCHHHHHHHCC-TTEEEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHhh-cCcEEEEEEEEE
Confidence            2378999999999999999999998888888888 999988877763

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.40  E-value=2.3e-12  Score=112.48  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=87.4

Q ss_pred             HHHHHhhcC-CCCCCeEEEEecCC---CcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          32 KDIFIDRLG-PTHDTKLLDVAGGT---DPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        32 ~~~~~~~l~-~~~~~~vLdvG~G~---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      .+.+.+.+. ..+..+|||+|||+   |..+             ..+..    .             .+..+++++|+|+
T Consensus        65 ~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~-------------~~~~~----~-------------~p~~~v~~vD~sp  114 (274)
T 2qe6_A           65 LVRGVRFLAGEAGISQFLDLGSGLPTVQNTH-------------EVAQS----V-------------NPDARVVYVDIDP  114 (274)
T ss_dssp             HHHHHHHHHTTTCCCEEEEETCCSCCSSCHH-------------HHHHH----H-------------CTTCEEEEEESSH
T ss_pred             HHHHHHHHhhccCCCEEEEECCCCCCCChHH-------------HHHHH----h-------------CCCCEEEEEECCh
Confidence            334444443 33446999999999   9765             21111    0             0256899999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----------CCCCceeEEeeee
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----------IESDSYSAYTIAF  176 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~~D~V~~~~  176 (241)
                      .|++.+++++.                         .    .++++++++|+...+           ++.++||+|++..
T Consensus       115 ~~l~~Ar~~~~-------------------------~----~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~  165 (274)
T 2qe6_A          115 MVLTHGRALLA-------------------------K----DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVG  165 (274)
T ss_dssp             HHHHHHHHHHT-------------------------T----CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETT
T ss_pred             HHHHHHHHhcC-------------------------C----CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEec
Confidence            99999998875                         2    146899999987531           2224799999999


Q ss_pred             hhhcccc--HHHHHHHHHHhccCCcEEEEEecC
Q psy1420         177 GIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS  207 (241)
Q Consensus       177 ~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~  207 (241)
                      ++|++++  +..++++++++|+|||+|++.++.
T Consensus       166 vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          166 MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            9999987  899999999999999999987654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.40  E-value=5.1e-13  Score=109.19  Aligned_cols=109  Identities=8%  Similarity=0.043  Sum_probs=86.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.        .          ...+++++|+++.+++.+++++.   
T Consensus        43 ~~~~~vLDlgcG~G~~~-------------~~~~~--------~----------~~~~v~~vD~~~~~~~~a~~~~~---   88 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALG-------------LEALS--------R----------GAASVLFVESDQRSAAVIARNIE---   88 (189)
T ss_dssp             CTTCEEEEETCTTCHHH-------------HHHHH--------T----------TCSEEEEEECCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEeCCCcCHHH-------------HHHHH--------C----------CCCeEEEEECCHHHHHHHHHHHH---
Confidence            56789999999999988             33222        1          24579999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc-ccHHHHHHHHHH--hcc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV-TRIDKALSEAYR--VLK  196 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~--~Lk  196 (241)
                                            ..++.  +++++++|+.+.+  .+.++||+|+++...++. ++..+.+..+.+  +|+
T Consensus        89 ----------------------~~~~~--~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~  144 (189)
T 3p9n_A           89 ----------------------ALGLS--GATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTR  144 (189)
T ss_dssp             ----------------------HHTCS--CEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCC
T ss_pred             ----------------------HcCCC--ceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccC
Confidence                                  55543  6899999988763  335789999998777664 678899999999  999


Q ss_pred             CCcEEEEEecCH
Q psy1420         197 PGGRFLCLEFSH  208 (241)
Q Consensus       197 pgG~l~i~~~~~  208 (241)
                      |||++++.....
T Consensus       145 pgG~l~~~~~~~  156 (189)
T 3p9n_A          145 EGTVAVVERATT  156 (189)
T ss_dssp             TTCEEEEEEETT
T ss_pred             CCeEEEEEecCC
Confidence            999999876443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.39  E-value=5.5e-13  Score=122.88  Aligned_cols=129  Identities=15%  Similarity=0.155  Sum_probs=93.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ......+++.+...++.+|||+|||+|..+             ..++.    .             .....++|+|+++.
T Consensus       159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~-------------l~lA~----~-------------~g~~kVvGIDiS~~  208 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVV-------------LQVAA----A-------------TNCKHHYGVEKADI  208 (438)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHH-------------HHHHH----H-------------CCCSEEEEEECCHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHH-------------HHHHH----H-------------CCCCEEEEEeCCHH
Confidence            334566777788889999999999999988             44432    0             02335999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC--CceeEEeeeehhhccccHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES--DSYSAYTIAFGIRNVTRIDK  186 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~V~~~~~l~~~~~~~~  186 (241)
                      +++.|+++....                +  .+....++..++++++++|+.++++..  +.+|+|+++..+ +.++...
T Consensus       209 ~lelAr~n~e~f----------------r--kr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~  269 (438)
T 3uwp_A          209 PAKYAETMDREF----------------R--KWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDH  269 (438)
T ss_dssp             HHHHHHHHHHHH----------------H--HHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHH
T ss_pred             HHHHHHHHHHHH----------------H--HHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-cCchHHH
Confidence            999988754300                0  000023432247999999999987643  469999987665 4678889


Q ss_pred             HHHHHHHhccCCcEEEEEec
Q psy1420         187 ALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~  206 (241)
                      .|.++++.|||||+|++.+.
T Consensus       270 aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          270 QLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             HHHHHHTTSCTTCEEEESSC
T ss_pred             HHHHHHHcCCCCcEEEEeec
Confidence            99999999999999998753

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.38  E-value=8.3e-13  Score=110.78  Aligned_cols=127  Identities=10%  Similarity=0.113  Sum_probs=93.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+.            ...+++++|+++.+++.+++++.   
T Consensus        57 ~~~~~vLdiG~G~G~~~-------------~~la~----~~~------------~~~~v~~vD~~~~~~~~a~~~~~---  104 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSA-------------VRMAR----LLQ------------PGARLLTMEINPDCAAITQQMLN---  104 (221)
T ss_dssp             HCCSEEEEECCTTSHHH-------------HHHHT----TSC------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             cCCCEEEEECCCCCHHH-------------HHHHH----hCC------------CCCEEEEEeCChHHHHHHHHHHH---
Confidence            46679999999999988             33333    110            35689999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCC-----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIE-----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~-----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                            ..++. ++++++.+|+.+ ++..     .++||+|++....++..+....+..+ ++|
T Consensus       105 ----------------------~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~L  160 (221)
T 3u81_A          105 ----------------------FAGLQ-DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLL  160 (221)
T ss_dssp             ----------------------HHTCG-GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCC
T ss_pred             ----------------------HcCCC-CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-ccc
Confidence                                  55554 468999999754 2321     26899999988777777777788888 999


Q ss_pred             cCCcEEEEEecCH---HHHHHHHHHCC-CceEE
Q psy1420         196 KPGGRFLCLEFSH---EEFKSMIESAG-FQYVT  224 (241)
Q Consensus       196 kpgG~l~i~~~~~---~~~~~~l~~~G-f~~~~  224 (241)
                      ||||++++.+...   .++.+.+++.. |....
T Consensus       161 kpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~  193 (221)
T 3u81_A          161 RKGTVLLADNVIVPGTPDFLAYVRGSSSFECTH  193 (221)
T ss_dssp             CTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEE
T ss_pred             CCCeEEEEeCCCCcchHHHHHHHhhCCCceEEE
Confidence            9999998865433   56666666554 44433

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.37  E-value=1.1e-11  Score=104.03  Aligned_cols=140  Identities=16%  Similarity=0.029  Sum_probs=98.2

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+...++.+|||+|||+|..+             ..++..+|                ....++++|+++.+++.+.+++
T Consensus        68 ~~~~~~~~~vLDlG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~~~~~~~~  118 (227)
T 1g8a_A           68 NFPIKPGKSVLYLGIASGTTA-------------SHVSDIVG----------------WEGKIFGIEFSPRVLRELVPIV  118 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHH-------------HHHHHHHC----------------TTSEEEEEESCHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEeccCCHHH-------------HHHHHHhC----------------CCeEEEEEECCHHHHHHHHHHH
Confidence            334678889999999999988             44443111                2357999999999999998887


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccH-HHHHHHHHH
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRI-DKALSEAYR  193 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~-~~~l~~~~~  193 (241)
                      .                         ..    +++.++.+|+....   ...++||+|++...   .++. ..++.++.+
T Consensus       119 ~-------------------------~~----~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~  166 (227)
T 1g8a_A          119 E-------------------------ER----RNIVPILGDATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEV  166 (227)
T ss_dssp             S-------------------------SC----TTEEEEECCTTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHH
T ss_pred             h-------------------------cc----CCCEEEEccCCCcchhhcccCCceEEEECCC---CHhHHHHHHHHHHH
Confidence            6                         22    36889999987732   12358999997654   2333 344999999


Q ss_pred             hccCCcEEEEEecCH-------------HHHHHHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420         194 VLKPGGRFLCLEFSH-------------EEFKSMIESAGFQYVTYENLT--FGVVAIHSGFK  240 (241)
Q Consensus       194 ~LkpgG~l~i~~~~~-------------~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~  240 (241)
                      +|||||++++.....             +++.++ +++ |++++..++.  .....+++++|
T Consensus       167 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          167 YLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             HEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             hcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence            999999998862111             456665 777 9998887763  22355566654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.37  E-value=1e-12  Score=110.99  Aligned_cols=123  Identities=17%  Similarity=0.109  Sum_probs=90.4

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.    .             .+...++|+|+++.+++.+++++.    
T Consensus        34 ~~~~vLDiGcG~G~~~-------------~~lA~----~-------------~p~~~v~giD~s~~~l~~a~~~~~----   79 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASL-------------VAMAK----D-------------RPEQDFLGIEVHSPGVGACLASAH----   79 (218)
T ss_dssp             CCCEEEEESCTTCHHH-------------HHHHH----H-------------CTTSEEEEECSCHHHHHHHHHHHH----
T ss_pred             CCCeEEEEeeeChHHH-------------HHHHH----H-------------CCCCeEEEEEecHHHHHHHHHHHH----
Confidence            5669999999999988             43333    1             134679999999999999999887    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--CCCCceeEEeeeehhhccccH--------HHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--IESDSYSAYTIAFGIRNVTRI--------DKALSEA  191 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~V~~~~~l~~~~~~--------~~~l~~~  191 (241)
                                           ..++.  +++++++|+..+ +  ++++++|.|++.+...+....        ..+++++
T Consensus        80 ---------------------~~~l~--nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~  136 (218)
T 3dxy_A           80 ---------------------EEGLS--NLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELV  136 (218)
T ss_dssp             ---------------------HTTCS--SEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHH
T ss_pred             ---------------------HhCCC--cEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHH
Confidence                                 55554  699999998874 3  567899999987543322211        2599999


Q ss_pred             HHhccCCcEEEEEecCH---HHHHHHHHHC-CCce
Q psy1420         192 YRVLKPGGRFLCLEFSH---EEFKSMIESA-GFQY  222 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~-Gf~~  222 (241)
                      .++|||||++++.+-..   +.+.+.+.+. +|..
T Consensus       137 ~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~  171 (218)
T 3dxy_A          137 KSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN  171 (218)
T ss_dssp             HHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred             HHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence            99999999999987655   4455555544 4544

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.37  E-value=4.6e-13  Score=107.96  Aligned_cols=140  Identities=11%  Similarity=0.104  Sum_probs=96.5

Q ss_pred             HHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          31 WKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        31 ~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ..+.+.+.+. ..++.+|||+|||+|..+             ..++.                  .....++++|+++.+
T Consensus        18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~-------------~~l~~------------------~~~~~v~~vD~~~~~   66 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLA-------------IEAVS------------------RGMSAAVLVEKNRKA   66 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHH-------------HHHHH------------------TTCCEEEEECCCHHH
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCCCHHH-------------HHHHH------------------cCCCEEEEEECCHHH
Confidence            3455555555 457789999999999988             43333                  123579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      ++.+++++.                         ..++. ++++++.+|+.+ ++...++||+|++....+ .......+
T Consensus        67 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~  119 (177)
T 2esr_A           67 QAIIQDNII-------------------------MTKAE-NRFTLLKMEAERAIDCLTGRFDLVFLDPPYA-KETIVATI  119 (177)
T ss_dssp             HHHHHHHHH-------------------------TTTCG-GGEEEECSCHHHHHHHBCSCEEEEEECCSSH-HHHHHHHH
T ss_pred             HHHHHHHHH-------------------------HcCCC-CceEEEECcHHHhHHhhcCCCCEEEECCCCC-cchHHHHH
Confidence            999999987                         44443 468899999876 333346799999876543 23455667


Q ss_pred             HHHH--HhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEecC
Q psy1420         189 SEAY--RVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       189 ~~~~--~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      +.+.  ++|+|||++++.......+.+  ...+|...+......
T Consensus       120 ~~l~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~yg~  161 (177)
T 2esr_A          120 EALAAKNLLSEQVMVVCETDKTVLLPK--EIATLGIWKEKIYGI  161 (177)
T ss_dssp             HHHHHTTCEEEEEEEEEEEETTCCCCS--EETTEEEEEEEEETT
T ss_pred             HHHHhCCCcCCCcEEEEEECCcccccc--ccCceEEEEeeecCc
Confidence            7776  999999999987655533222  224566655554433

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.35  E-value=3e-12  Score=113.83  Aligned_cols=136  Identities=14%  Similarity=0.156  Sum_probs=100.8

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+.+.++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++
T Consensus       110 ~~~~l~~~~g~~VLDlg~G~G~~t-------------~~la~~~~----------------~~~~v~avD~s~~~l~~a~  160 (315)
T 1ixk_A          110 PPVALDPKPGEIVADMAAAPGGKT-------------SYLAQLMR----------------NDGVIYAFDVDENRLRETR  160 (315)
T ss_dssp             HHHHHCCCTTCEEEECCSSCSHHH-------------HHHHHHTT----------------TCSEEEEECSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEcCCHHHHHHHH
Confidence            345567788899999999999988             44443111                2467999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hhhcccc-----
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GIRNVTR-----  183 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l~~~~~-----  183 (241)
                      +++.                         +.++.  ++.+++.|+..++...++||+|++..      .++..++     
T Consensus       161 ~~~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~  213 (315)
T 1ixk_A          161 LNLS-------------------------RLGVL--NVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNR  213 (315)
T ss_dssp             HHHH-------------------------HHTCC--SEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------C
T ss_pred             HHHH-------------------------HhCCC--eEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcC
Confidence            9988                         55654  58899999888764456899999742      1222121     


Q ss_pred             -----------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCCCceEEEE
Q psy1420         184 -----------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       184 -----------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~  226 (241)
                                 ...+|+++.++|||||++++++.+.      +.+..++++.||+.+.+.
T Consensus       214 ~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~~  273 (315)
T 1ixk_A          214 TMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPLK  273 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEecCC
Confidence                       1588999999999999999876543      456778889998876553

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=9.6e-12  Score=105.08  Aligned_cols=129  Identities=12%  Similarity=0.153  Sum_probs=97.7

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+...+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++.
T Consensus        81 ~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~~~~  128 (248)
T 2yvl_A           81 FYIALKLNLNKEKRVLEFGTGSGALL-------------AVLSE-------------------VAGEVWTFEAVEEFYKT  128 (248)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEECSCHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCccHHH-------------HHHHH-------------------hCCEEEEEecCHHHHHH
Confidence            34556667778889999999999988             44444                   24579999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      ++++..                         ..++. +++++...|+.+...+.++||+|++     +.+++..+++++.
T Consensus       129 a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~  177 (248)
T 2yvl_A          129 AQKNLK-------------------------KFNLG-KNVKFFNVDFKDAEVPEGIFHAAFV-----DVREPWHYLEKVH  177 (248)
T ss_dssp             HHHHHH-------------------------HTTCC-TTEEEECSCTTTSCCCTTCBSEEEE-----CSSCGGGGHHHHH
T ss_pred             HHHHHH-------------------------HcCCC-CcEEEEEcChhhcccCCCcccEEEE-----CCcCHHHHHHHHH
Confidence            999887                         44543 4688899998875434568999997     4557778999999


Q ss_pred             HhccCCcEEEEEecCHH---HHHHHHHHCCCceEEE
Q psy1420         193 RVLKPGGRFLCLEFSHE---EFKSMIESAGFQYVTY  225 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~~---~~~~~l~~~Gf~~~~~  225 (241)
                      ++|+|||++++.....+   ++.+.+++. |..++.
T Consensus       178 ~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~  212 (248)
T 2yvl_A          178 KSLMEGAPVGFLLPTANQVIKLLESIENY-FGNLEV  212 (248)
T ss_dssp             HHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEEE
T ss_pred             HHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcceE
Confidence            99999999999888664   444445555 654443

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.34  E-value=1.2e-11  Score=107.98  Aligned_cols=143  Identities=11%  Similarity=0.050  Sum_probs=98.1

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecC-ChHhHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDI-PNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-s~~~~~  111 (241)
                      +.+.......++.+|||+|||+|..+             ..++.                  ....+++++|+ ++.+++
T Consensus        69 ~~l~~~~~~~~~~~vLDlG~G~G~~~-------------~~~a~------------------~~~~~v~~~D~s~~~~~~  117 (281)
T 3bzb_A           69 DTLCWQPELIAGKTVCELGAGAGLVS-------------IVAFL------------------AGADQVVATDYPDPEILN  117 (281)
T ss_dssp             HHHHHCGGGTTTCEEEETTCTTSHHH-------------HHHHH------------------TTCSEEEEEECSCHHHHH
T ss_pred             HHHHhcchhcCCCeEEEecccccHHH-------------HHHHH------------------cCCCEEEEEeCCCHHHHH
Confidence            44444444456779999999999987             33322                  01237999999 899999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCC---CCCeeEEecccCCCC--C----CCCceeEEeeeehhhccc
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP---NPRLRFLEANAEELP--I----ESDSYSAYTIAFGIRNVT  182 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~--~----~~~~~D~V~~~~~l~~~~  182 (241)
                      .+++++...-.                    ...++.   .+++++...+.....  .    +.++||+|+++.++++.+
T Consensus       118 ~a~~n~~~N~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~  177 (281)
T 3bzb_A          118 SLESNIREHTA--------------------NSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ  177 (281)
T ss_dssp             HHHHHHHTTCC------------------------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG
T ss_pred             HHHHHHHHhhh--------------------hhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH
Confidence            99998830000                    011111   024666655543321  1    346899999999999999


Q ss_pred             cHHHHHHHHHHhcc---C--CcEEEEEecC--------HHHHHHHHHHCC-CceEEEE
Q psy1420         183 RIDKALSEAYRVLK---P--GGRFLCLEFS--------HEEFKSMIESAG-FQYVTYE  226 (241)
Q Consensus       183 ~~~~~l~~~~~~Lk---p--gG~l~i~~~~--------~~~~~~~l~~~G-f~~~~~~  226 (241)
                      +...+++.+.++|+   |  ||+++++-..        ...+.+.++++| |.+.++.
T Consensus       178 ~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          178 AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred             HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence            99999999999999   9  9987664322        256777889999 9988773

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.34  E-value=6.2e-12  Score=111.27  Aligned_cols=134  Identities=16%  Similarity=0.245  Sum_probs=96.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++.+..+ 
T Consensus        94 ~~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~a~~~~~~~-  142 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVL-------------REVLR--------H---------GTVEHCDLVDIDGEVMEQSKQHFPQI-  142 (304)
T ss_dssp             SSCCEEEEEECTTSHHH-------------HHHHT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH-
T ss_pred             CCCCeEEEEcCCCCHHH-------------HHHHh--------C---------CCCCEEEEEECCHHHHHHHHHHhHHh-
Confidence            45679999999999988             44433        0         02468999999999999999876300 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--CCCceeEEeeeehhhccccH----HHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--ESDSYSAYTIAFGIRNVTRI----DKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~V~~~~~l~~~~~~----~~~l~~~~~~L  195 (241)
                                            ..+...++++++.+|+...+.  +.++||+|++.......+..    ..+++++.++|
T Consensus       143 ----------------------~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~L  200 (304)
T 3bwc_A          143 ----------------------SRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRIL  200 (304)
T ss_dssp             ----------------------HGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHE
T ss_pred             ----------------------hcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhc
Confidence                                  001112478999999876543  36789999987655443322    68999999999


Q ss_pred             cCCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420         196 KPGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       196 kpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ||||++++...+.       +.+.+.++++||..+.....
T Consensus       201 kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          201 KPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALM  240 (304)
T ss_dssp             EEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             CCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEe
Confidence            9999999865442       77888999999998877654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.33  E-value=1.5e-11  Score=111.70  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=108.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+.... +.++.+|||+|||+|..+             ..++.    .             .....++|+|+++.+++
T Consensus       207 a~~l~~~~-~~~~~~vLD~gCGsG~~~-------------i~~a~----~-------------~~~~~v~g~Dis~~~l~  255 (373)
T 3tm4_A          207 ANAMIELA-ELDGGSVLDPMCGSGTIL-------------IELAL----R-------------RYSGEIIGIEKYRKHLI  255 (373)
T ss_dssp             HHHHHHHH-TCCSCCEEETTCTTCHHH-------------HHHHH----T-------------TCCSCEEEEESCHHHHH
T ss_pred             HHHHHHhh-cCCCCEEEEccCcCcHHH-------------HHHHH----h-------------CCCCeEEEEeCCHHHHH
Confidence            34455555 678889999999999988             44443    0             01237999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-------ccc-
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-------VTR-  183 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-------~~~-  183 (241)
                      .+++++.                         ..++. +++++.++|+..++.+.++||+|+++-....       ..+ 
T Consensus       256 ~A~~n~~-------------------------~~gl~-~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~l  309 (373)
T 3tm4_A          256 GAEMNAL-------------------------AAGVL-DKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDL  309 (373)
T ss_dssp             HHHHHHH-------------------------HTTCG-GGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHH
T ss_pred             HHHHHHH-------------------------HcCCC-CceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHH
Confidence            9999988                         55654 4689999999998877789999999643221       222 


Q ss_pred             HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEecCc
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      ...+++++.++|  +|.++++..+.+.+++.+.+.||+..+...+..|
T Consensus       310 y~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~~~~G~~~~~~~~~~nG  355 (373)
T 3tm4_A          310 YMKFFNELAKVL--EKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHG  355 (373)
T ss_dssp             HHHHHHHHHHHE--EEEEEEEESCHHHHHHHHHHTTEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHc--CCeEEEEECCHHHHHHHHHHcCCEEEEEEEEEcC
Confidence            267888999988  7777777888899999999999999888777543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.33  E-value=8.6e-12  Score=107.05  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=89.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+             ....++++|+++.+++.++++..   
T Consensus        84 ~~~~~vLdiG~G~G~~~-------------~~l~~----~~-------------~~~~v~~vD~s~~~~~~a~~~~~---  130 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYT-------------HAFAD----AL-------------PEITTFGLDVSKVAIKAAAKRYP---  130 (269)
T ss_dssp             TTCCEEEEETCTTSTTH-------------HHHHH----TC-------------TTSEEEEEESCHHHHHHHHHHCT---
T ss_pred             CCCCEEEEECCCCCHHH-------------HHHHH----hC-------------CCCeEEEEeCCHHHHHHHHHhCC---
Confidence            56789999999999988             44443    10             14579999999999999887643   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                                   ++.+...|+..++.++++||+|++....       ..++++.++|||||++
T Consensus       131 -----------------------------~~~~~~~d~~~~~~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l  174 (269)
T 1p91_A          131 -----------------------------QVTFCVASSHRLPFSDTSMDAIIRIYAP-------CKAEELARVVKPGGWV  174 (269)
T ss_dssp             -----------------------------TSEEEECCTTSCSBCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEE
T ss_pred             -----------------------------CcEEEEcchhhCCCCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEE
Confidence                                         4778899998888877899999986553       3589999999999999


Q ss_pred             EEEecCHHHHHH---------------HHHHCCCceEEEEEec
Q psy1420         202 LCLEFSHEEFKS---------------MIESAGFQYVTYENLT  229 (241)
Q Consensus       202 ~i~~~~~~~~~~---------------~l~~~Gf~~~~~~~~~  229 (241)
                      ++.+.....+.+               .+..+||++++.+.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~  217 (269)
T 1p91_A          175 ITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELC  217 (269)
T ss_dssp             EEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEEEEEEEEE
T ss_pred             EEEEcCHHHHHHHHHHhhcccccccchhhHhcCCcEEEEEEEE
Confidence            998866533222               2235677777666554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.32  E-value=1.2e-12  Score=111.86  Aligned_cols=133  Identities=11%  Similarity=0.114  Sum_probs=87.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.    ..             ...+++++|+++.+++.+++++.    
T Consensus        65 ~~~~vLDlG~G~G~~~-------------~~la~----~~-------------~~~~v~gvD~s~~~~~~a~~~~~----  110 (254)
T 2h00_A           65 TLRRGIDIGTGASCIY-------------PLLGA----TL-------------NGWYFLATEVDDMCFNYAKKNVE----  110 (254)
T ss_dssp             CCCEEEEESCTTTTHH-------------HHHHH----HH-------------HCCEEEEEESCHHHHHHHHHHHH----
T ss_pred             CCCEEEEeCCChhHHH-------------HHHHH----hC-------------CCCeEEEEECCHHHHHHHHHHHH----
Confidence            5679999999999987             33332    10             24689999999999999999987    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCC---CceeEEeeeehhhccc--------------
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIES---DSYSAYTIAFGIRNVT--------------  182 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~---~~~D~V~~~~~l~~~~--------------  182 (241)
                                           ..++. .+++++++|+...   +++.   ++||+|+++-..+...              
T Consensus       111 ---------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~  168 (254)
T 2h00_A          111 ---------------------QNNLS-DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRP  168 (254)
T ss_dssp             ---------------------HTTCT-TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-----------------
T ss_pred             ---------------------HcCCC-ccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhccccccccccc
Confidence                                 55554 4689999987652   3332   5899999973332211              


Q ss_pred             -cHHHHHHHH--------------------HHhccCCcEEEEEec--CH-HHHHHHHHHCCCceEEEEEecCc
Q psy1420         183 -RIDKALSEA--------------------YRVLKPGGRFLCLEF--SH-EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       183 -~~~~~l~~~--------------------~~~LkpgG~l~i~~~--~~-~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                       ....++.++                    .+.++++|.+.+..-  .. +++.++++++||..++......|
T Consensus       169 ~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g  241 (254)
T 2h00_A          169 PPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQG  241 (254)
T ss_dssp             --------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEET
T ss_pred             CCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEecC
Confidence             011223333                    345555555543221  11 68889999999999988887655

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.32  E-value=1.5e-11  Score=105.23  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=101.2

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|+|+|||+|..+             ..++.        .         .+..+++++|+++.+++.|++++.   
T Consensus        20 ~~g~~VlDIGtGsG~l~-------------i~la~--------~---------~~~~~V~AvDi~~~al~~A~~N~~---   66 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLP-------------IFLLQ--------M---------GYCDFAIAGEVVNGPYQSALKNVS---   66 (230)
T ss_dssp             CTTEEEEEETCSTTHHH-------------HHHHH--------T---------TCEEEEEEEESSHHHHHHHHHHHH---
T ss_pred             CCCCEEEEECCchHHHH-------------HHHHH--------h---------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence            46789999999999988             33332        0         024579999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++. +++++..+|..+...+.++||+|+++....  .-....+....+.|+++|+|
T Consensus        67 ----------------------~~gl~-~~I~~~~gD~l~~~~~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~l  121 (230)
T 3lec_A           67 ----------------------EHGLT-SKIDVRLANGLSAFEEADNIDTITICGMGG--RLIADILNNDIDKLQHVKTL  121 (230)
T ss_dssp             ----------------------HTTCT-TTEEEEECSGGGGCCGGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEE
T ss_pred             ----------------------HcCCC-CcEEEEECchhhccccccccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEE
Confidence                                  66765 579999999887654444799988654332  33567888889999999999


Q ss_pred             EEEecCH-HHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFSH-EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~~-~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++..... +.+++++.+.||.+++..-.
T Consensus       122 Ilqp~~~~~~lr~~L~~~Gf~i~~E~lv  149 (230)
T 3lec_A          122 VLQPNNREDDLRKWLAANDFEIVAEDIL  149 (230)
T ss_dssp             EEEESSCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEECCCChHHHHHHHHHCCCEEEEEEEE
Confidence            9876544 89999999999998887744

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.32  E-value=8.3e-12  Score=112.31  Aligned_cols=114  Identities=15%  Similarity=0.189  Sum_probs=89.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+.+.+...++.+|||+|||+|..+             ..++.                  ....+++++|+++ ++
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls-------------~~la~------------------~g~~~V~~vD~s~-~~   85 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILS-------------FFAAQ------------------AGARKIYAVEAST-MA   85 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEECST-HH
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHH-------------HHHHh------------------CCCCEEEEECCHH-HH
Confidence            4566667666678889999999999988             33333                  1245899999996 88


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKAL  188 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l  188 (241)
                      +.+++++.                         ..++. ++++++.+|+.+.+.+ ++||+|++....+++  +.....+
T Consensus        86 ~~a~~~~~-------------------------~~~l~-~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l  138 (348)
T 2y1w_A           86 QHAEVLVK-------------------------SNNLT-DRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESY  138 (348)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHH
T ss_pred             HHHHHHHH-------------------------HcCCC-CcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHH
Confidence            88888877                         55554 5799999999987654 679999998776655  3456888


Q ss_pred             HHHHHhccCCcEEEE
Q psy1420         189 SEAYRVLKPGGRFLC  203 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i  203 (241)
                      ..+.++|||||++++
T Consensus       139 ~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          139 LHAKKYLKPSGNMFP  153 (348)
T ss_dssp             HHGGGGEEEEEEEES
T ss_pred             HHHHhhcCCCeEEEE
Confidence            899999999999984

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.32  E-value=2e-12  Score=115.45  Aligned_cols=114  Identities=15%  Similarity=0.188  Sum_probs=87.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+.+.....++.+|||+|||+|.++             ..++.                  ....+++++|++ .++
T Consensus        26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls-------------~~la~------------------~g~~~v~~vD~s-~~~   73 (328)
T 1g6q_1           26 YRNAIIQNKDLFKDKIVLDVGCGTGILS-------------MFAAK------------------HGAKHVIGVDMS-SII   73 (328)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETCTTSHHH-------------HHHHH------------------TCCSEEEEEESS-THH
T ss_pred             HHHHHHhhHhhcCCCEEEEecCccHHHH-------------HHHHH------------------CCCCEEEEEChH-HHH
Confidence            3444544444456789999999999987             33333                  123479999999 589


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee---hhhccccHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GIRNVTRIDKA  187 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~---~l~~~~~~~~~  187 (241)
                      +.+++++.                         ..++. ++++++.+|+.+.+.+.++||+|++..   .+.+...+..+
T Consensus        74 ~~a~~~~~-------------------------~~~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~  127 (328)
T 1g6q_1           74 EMAKELVE-------------------------LNGFS-DKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTV  127 (328)
T ss_dssp             HHHHHHHH-------------------------HTTCT-TTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHH
T ss_pred             HHHHHHHH-------------------------HcCCC-CCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHH
Confidence            99988887                         55554 579999999999887778999999874   34455678899


Q ss_pred             HHHHHHhccCCcEEE
Q psy1420         188 LSEAYRVLKPGGRFL  202 (241)
Q Consensus       188 l~~~~~~LkpgG~l~  202 (241)
                      +..+.++|||||+++
T Consensus       128 l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          128 LYARDHYLVEGGLIF  142 (328)
T ss_dssp             HHHHHHHEEEEEEEE
T ss_pred             HHHHHhhcCCCeEEE
Confidence            999999999999987

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.32  E-value=7.7e-12  Score=104.86  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=86.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+.+.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.++
T Consensus        58 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~~  105 (231)
T 1vbf_A           58 LGIFMLDELDLHKGQKVLEIGTGIGYYT-------------ALIAE-------------------IVDKVVSVEINEKMY  105 (231)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEEESCHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCCHHH-------------HHHHH-------------------HcCEEEEEeCCHHHH
Confidence            4456777777788899999999999988             44444                   236799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.++++..                         ..+    ++++..+|+.......++||+|++..+++++.      .+
T Consensus       106 ~~a~~~~~-------------------------~~~----~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~  150 (231)
T 1vbf_A          106 NYASKLLS-------------------------YYN----NIKLILGDGTLGYEEEKPYDRVVVWATAPTLL------CK  150 (231)
T ss_dssp             HHHHHHHT-------------------------TCS----SEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HH
T ss_pred             HHHHHHHh-------------------------hcC----CeEEEECCcccccccCCCccEEEECCcHHHHH------HH
Confidence            99998876                         222    58889999877322356899999999998876      36


Q ss_pred             HHHhccCCcEEEEEecC
Q psy1420         191 AYRVLKPGGRFLCLEFS  207 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~  207 (241)
                      +.++|+|||++++....
T Consensus       151 ~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          151 PYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             HHHTEEEEEEEEEEECS
T ss_pred             HHHHcCCCcEEEEEEcC
Confidence            88999999999987643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=5.9e-12  Score=104.45  Aligned_cols=114  Identities=14%  Similarity=0.087  Sum_probs=87.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+.+.+...++.+|||+|||+|..+             ..++...+                ...+++++|+++.++
T Consensus        65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~vD~~~~~~  115 (215)
T 2yxe_A           65 MVGMMCELLDLKPGMKVLEIGTGCGYHA-------------AVTAEIVG----------------EDGLVVSIERIPELA  115 (215)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEEESCHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCccHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHH
Confidence            3456677777788899999999999988             44443110                236799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.++++..                         ..++.  ++.+...|+.......++||+|++..++++++      ++
T Consensus       116 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~  162 (215)
T 2yxe_A          116 EKAERTLR-------------------------KLGYD--NVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP------EP  162 (215)
T ss_dssp             HHHHHHHH-------------------------HHTCT--TEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HH
T ss_pred             HHHHHHHH-------------------------HcCCC--CeEEEECCcccCCCCCCCeeEEEECCchHHHH------HH
Confidence            99998876                         44444  58888888754322256899999999998876      47


Q ss_pred             HHHhccCCcEEEEEec
Q psy1420         191 AYRVLKPGGRFLCLEF  206 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~  206 (241)
                      +.++|||||++++...
T Consensus       163 ~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          163 LIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             HHHTEEEEEEEEEEES
T ss_pred             HHHHcCCCcEEEEEEC
Confidence            8999999999998754

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.31  E-value=9.2e-12  Score=106.29  Aligned_cols=131  Identities=18%  Similarity=0.196  Sum_probs=89.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .   .          +...++|+|+++.+++.+++++..+ 
T Consensus        45 ~~~~~vLDiGcG~G~~~-------------~~la~----~---~----------p~~~v~GiDis~~~l~~A~~~~~~l-   93 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLL-------------VELSP----L---F----------PDTLILGLEIRVKVSDYVQDRIRAL-   93 (235)
T ss_dssp             -CCEEEEEETCTTCHHH-------------HHHGG----G---S----------TTSEEEEEESCHHHHHHHHHHHHHH-
T ss_pred             CCCCeEEEEccCCcHHH-------------HHHHH----H---C----------CCCeEEEEECCHHHHHHHHHHHHHH-
Confidence            45678999999999988             44333    1   0          2467999999999999998776410 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CC--CCCCceeEEeeeehhhcccc--------HHHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LP--IESDSYSAYTIAFGIRNVTR--------IDKALSE  190 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~~~D~V~~~~~l~~~~~--------~~~~l~~  190 (241)
                                        ......+.  .+++++++|+.. ++  ++.+++|.|++.+.-.+...        ...++++
T Consensus        94 ------------------~~~~~~~~--~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~  153 (235)
T 3ckk_A           94 ------------------RAAPAGGF--QNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAE  153 (235)
T ss_dssp             ------------------HHSTTCCC--TTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHH
T ss_pred             ------------------HHHHhcCC--CeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHH
Confidence                              00001122  369999999886 55  56789999987653322110        1479999


Q ss_pred             HHHhccCCcEEEEEecCH---HHHHHHHHHCC-CceE
Q psy1420         191 AYRVLKPGGRFLCLEFSH---EEFKSMIESAG-FQYV  223 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G-f~~~  223 (241)
                      +.++|||||.|++.+-..   ..+.+.+.+.| |..+
T Consensus       154 ~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          154 YAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             HHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred             HHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence            999999999999876555   45566667776 5443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.31  E-value=2e-12  Score=107.39  Aligned_cols=109  Identities=12%  Similarity=0.192  Sum_probs=82.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                  .....++++|+++.+++.+++++.    
T Consensus        53 ~~~~vLDlGcGtG~~~-------------~~~~~------------------~~~~~v~gvD~s~~~l~~a~~~~~----   97 (201)
T 2ift_A           53 HQSECLDGFAGSGSLG-------------FEALS------------------RQAKKVTFLELDKTVANQLKKNLQ----   97 (201)
T ss_dssp             TTCEEEETTCTTCHHH-------------HHHHH------------------TTCSEEEEECSCHHHHHHHHHHHH----
T ss_pred             CCCeEEEcCCccCHHH-------------HHHHH------------------ccCCEEEEEECCHHHHHHHHHHHH----
Confidence            5679999999999988             33222                  023579999999999999999987    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--CCCc-eeEEeeeehhhccccHHHHHHHH--HHhccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--ESDS-YSAYTIAFGIRNVTRIDKALSEA--YRVLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~D~V~~~~~l~~~~~~~~~l~~~--~~~Lkp  197 (241)
                                           ..++..++++++++|+.+...  +.++ ||+|++...++ ..+....++.+  .++|+|
T Consensus        98 ---------------------~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~Lkp  155 (201)
T 2ift_A           98 ---------------------TLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKP  155 (201)
T ss_dssp             ---------------------HTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEE
T ss_pred             ---------------------HhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCC
Confidence                                 555421368999999876432  3568 99999887754 56677888888  678999


Q ss_pred             CcEEEEEecCH
Q psy1420         198 GGRFLCLEFSH  208 (241)
Q Consensus       198 gG~l~i~~~~~  208 (241)
                      ||.+++.....
T Consensus       156 gG~l~i~~~~~  166 (201)
T 2ift_A          156 NALIYVETEKD  166 (201)
T ss_dssp             EEEEEEEEESS
T ss_pred             CcEEEEEECCC
Confidence            99998876544

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.31  E-value=9.6e-12  Score=110.88  Aligned_cols=135  Identities=11%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...++..+...++.+|||+|||+|..+             ..++..+|                ....++++|+++.+++
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~-------------~~la~~~g----------------~~~~v~~vD~~~~~~~  144 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMS-------------LFLSKAVG----------------SQGRVISFEVRKDHHD  144 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTCEEEEEESSHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHH-------------HHHHHHhC----------------CCceEEEEeCCHHHHH
Confidence            345566667788999999999999988             44443111                2368999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      .+++++..+-.          ...+.+     -.+.. .++++..+|+.+.  +++.++||+|++.     .+++..++.
T Consensus       145 ~a~~~~~~~~~----------~~~ln~-----~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~  203 (336)
T 2b25_A          145 LAKKNYKHWRD----------SWKLSH-----VEEWP-DNVDFIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLP  203 (336)
T ss_dssp             HHHHHHHHHHH----------HHTTTC-----SSCCC-CCEEEEESCTTCCC-------EEEEEEC-----SSSTTTTHH
T ss_pred             HHHHHHHHhhc----------cccccc-----ccccC-CceEEEECChHHcccccCCCCeeEEEEC-----CCCHHHHHH
Confidence            99988761000          000000     00011 3689999998876  4455689999974     345556899


Q ss_pred             HHHHhccCCcEEEEEecCHHHHHHHHH
Q psy1420         190 EAYRVLKPGGRFLCLEFSHEEFKSMIE  216 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~~~~~~~l~  216 (241)
                      ++.++|+|||++++.......+.+.++
T Consensus       204 ~~~~~LkpgG~lv~~~~~~~~~~~~~~  230 (336)
T 2b25_A          204 VFYPHLKHGGVCAVYVVNITQVIELLD  230 (336)
T ss_dssp             HHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred             HHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence            999999999999998887755554444

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.31  E-value=1.2e-11  Score=106.83  Aligned_cols=136  Identities=11%  Similarity=0.144  Sum_probs=97.2

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ...+...++.+|||+|||+|..+             ..++.    .             .....++++|+++.+++.+++
T Consensus        29 ~~~~~~~~~~~VLDlG~G~G~~~-------------l~la~----~-------------~~~~~v~gvDi~~~~~~~a~~   78 (260)
T 2ozv_A           29 ASLVADDRACRIADLGAGAGAAG-------------MAVAA----R-------------LEKAEVTLYERSQEMAEFARR   78 (260)
T ss_dssp             HHTCCCCSCEEEEECCSSSSHHH-------------HHHHH----H-------------CTTEEEEEEESSHHHHHHHHH
T ss_pred             HHHhcccCCCEEEEeCChHhHHH-------------HHHHH----h-------------CCCCeEEEEECCHHHHHHHHH
Confidence            34455567889999999999988             33332    0             024579999999999999999


Q ss_pred             HHhcCCCccccccccceecceeeeeeccc---cCCCCCCeeEEecccCCC-------CCCCCceeEEeeeehhhc-----
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDK---IDIPNPRLRFLEANAEEL-------PIESDSYSAYTIAFGIRN-----  180 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~-------~~~~~~~D~V~~~~~l~~-----  180 (241)
                      ++.                         .   .++. ++++++++|+.+.       +++.++||+|+++-....     
T Consensus        79 n~~-------------------------~~~~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~  132 (260)
T 2ozv_A           79 SLE-------------------------LPDNAAFS-ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRR  132 (260)
T ss_dssp             HTT-------------------------SGGGTTTG-GGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC-------
T ss_pred             HHH-------------------------hhhhCCCc-ceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCC
Confidence            987                         4   4443 4689999999876       245678999999732211     


Q ss_pred             -------------cccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420         181 -------------VTRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       181 -------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~  228 (241)
                                   ......+++.+.++|||||++++.....  .++.+.+++. |...++...
T Consensus       133 ~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~~~i~~v  194 (260)
T 2ozv_A          133 TPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGGLEITLI  194 (260)
T ss_dssp             --------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEEEEEEEE
T ss_pred             CcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCceEEEEE
Confidence                         1246789999999999999998864333  5566677664 766655543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.31  E-value=6.4e-12  Score=111.43  Aligned_cols=115  Identities=17%  Similarity=0.283  Sum_probs=90.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+++.+..+++.+|||+|||+|..+             ..++.    ...            ...+++++|+++.+
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~-------------~~la~----~~~------------~~~~v~gvD~s~~~  112 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNA-------------AVMSR----VVG------------EKGLVVSVEYSRKI  112 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH----HHC------------TTCEEEEEESCHHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHH-------------HHHHH----hcC------------CCCEEEEEECCHHH
Confidence            34566777778888999999999999988             44443    100            13469999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.+++++.                         ..++.  ++++..+|+...+.+.++||+|++...++++.      +
T Consensus       113 ~~~a~~~~~-------------------------~~g~~--~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~------~  159 (317)
T 1dl5_A          113 CEIAKRNVE-------------------------RLGIE--NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP------E  159 (317)
T ss_dssp             HHHHHHHHH-------------------------HTTCC--SEEEEESCGGGCCGGGCCEEEEEECSBBSCCC------H
T ss_pred             HHHHHHHHH-------------------------HcCCC--CeEEEECChhhccccCCCeEEEEEcCCHHHHH------H
Confidence            999999887                         55554  58899999887544457899999999998876      5


Q ss_pred             HHHHhccCCcEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~  206 (241)
                      .+.+.|||||++++...
T Consensus       160 ~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          160 TWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             HHHHHEEEEEEEEEEBC
T ss_pred             HHHHhcCCCcEEEEEEC
Confidence            68889999999998643

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.30  E-value=2.5e-11  Score=103.49  Aligned_cols=128  Identities=19%  Similarity=0.177  Sum_probs=98.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|+|+|||+|..+             ..++.        .         .+..+++++|+++.+++.|++++.   
T Consensus        14 ~~g~~VlDIGtGsG~l~-------------i~la~--------~---------~~~~~V~avDi~~~al~~A~~N~~---   60 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLP-------------IELVE--------R---------GQIKSAIAGEVVEGPYQSAVKNVE---   60 (225)
T ss_dssp             CTTEEEEEETCSTTHHH-------------HHHHH--------T---------TSEEEEEEEESSHHHHHHHHHHHH---
T ss_pred             CCCCEEEEeCCCcHHHH-------------HHHHH--------h---------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence            46779999999999988             33332        0         024579999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                            ..++. +++++..+|..+ ++. .++||+|+.+..-.  .-...++....+.|+|+|+
T Consensus        61 ----------------------~~gl~-~~i~~~~~d~l~~l~~-~~~~D~IviaG~Gg--~~i~~Il~~~~~~L~~~~~  114 (225)
T 3kr9_A           61 ----------------------AHGLK-EKIQVRLANGLAAFEE-TDQVSVITIAGMGG--RLIARILEEGLGKLANVER  114 (225)
T ss_dssp             ----------------------HTTCT-TTEEEEECSGGGGCCG-GGCCCEEEEEEECH--HHHHHHHHHTGGGCTTCCE
T ss_pred             ----------------------HcCCC-ceEEEEECchhhhccc-CcCCCEEEEcCCCh--HHHHHHHHHHHHHhCCCCE
Confidence                                  67776 579999999854 332 23699988754322  2356889999999999999


Q ss_pred             EEEEecCH-HHHHHHHHHCCCceEEEEEe
Q psy1420         201 FLCLEFSH-EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       201 l~i~~~~~-~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++..... ..+++++.+.||.+++..-.
T Consensus       115 lVlq~~~~~~~vr~~L~~~Gf~i~~e~lv  143 (225)
T 3kr9_A          115 LILQPNNREDDLRIWLQDHGFQIVAESIL  143 (225)
T ss_dssp             EEEEESSCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEECCCCHHHHHHHHHHCCCEEEEEEEE
Confidence            98865543 89999999999998877643

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.29  E-value=9.6e-12  Score=122.64  Aligned_cols=125  Identities=10%  Similarity=0.034  Sum_probs=93.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.        ...        ...+++|+|+++.+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~la-------------i~LAr--------~g~--------p~a~VtGVDIS~em  758 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLL-------------DSLLD--------YPT--------SLQTIIGVDISPKG  758 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHH-------------HHHTS--------SCC--------CCCEEEEEESCHHH
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHH-------------HHHHH--------hCC--------CCCeEEEEECCHHH
Confidence            34455566665567889999999999988             43333        100        13689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KA  187 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~  187 (241)
                      ++.+++++....                   ...+.+.  .++++.++|+..++.+.++||+|++..+++|++++.  .+
T Consensus       759 Le~AReRLa~~l-------------------nAkr~gl--~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~  817 (950)
T 3htx_A          759 LARAAKMLHVKL-------------------NKEACNV--KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEF  817 (950)
T ss_dssp             HHHHHHHHHHHT-------------------TTTCSSC--SEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHhhhcc-------------------chhhcCC--CceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHH
Confidence            999988654100                   0001122  378999999999988888999999999999998866  59


Q ss_pred             HHHHHHhccCCcEEEEEe
Q psy1420         188 LSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~  205 (241)
                      ++++.++|||| .+++.+
T Consensus       818 L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          818 GEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             HHHHHHTTCCS-EEEEEE
T ss_pred             HHHHHHHcCCC-EEEEEe
Confidence            99999999999 776654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.29  E-value=9.4e-12  Score=105.35  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +...+...++.+|||+|||+|..+             ..++.    .             ....+++++|+++.+++.++
T Consensus        63 l~~~~~~~~~~~vLDiG~G~G~~~-------------~~la~----~-------------~~~~~v~~vD~~~~~~~~a~  112 (232)
T 3ntv_A           63 IKQLIRMNNVKNILEIGTAIGYSS-------------MQFAS----I-------------SDDIHVTTIERNETMIQYAK  112 (232)
T ss_dssp             HHHHHHHHTCCEEEEECCSSSHHH-------------HHHHT----T-------------CTTCEEEEEECCHHHHHHHH
T ss_pred             HHHHHhhcCCCEEEEEeCchhHHH-------------HHHHH----h-------------CCCCEEEEEECCHHHHHHHH
Confidence            333333456779999999999988             33332    0             02568999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      +++.                         ..++. ++++++.+|+.+. + ...++||+|++...   ......+++.+.
T Consensus       113 ~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~  163 (232)
T 3ntv_A          113 QNLA-------------------------TYHFE-NQVRIIEGNALEQFENVNDKVYDMIFIDAA---KAQSKKFFEIYT  163 (232)
T ss_dssp             HHHH-------------------------HTTCT-TTEEEEESCGGGCHHHHTTSCEEEEEEETT---SSSHHHHHHHHG
T ss_pred             HHHH-------------------------HcCCC-CcEEEEECCHHHHHHhhccCCccEEEEcCc---HHHHHHHHHHHH
Confidence            9987                         55654 5799999998764 3 23578999997643   456778999999


Q ss_pred             HhccCCcEEEEE
Q psy1420         193 RVLKPGGRFLCL  204 (241)
Q Consensus       193 ~~LkpgG~l~i~  204 (241)
                      ++|||||++++-
T Consensus       164 ~~LkpgG~lv~d  175 (232)
T 3ntv_A          164 PLLKHQGLVITD  175 (232)
T ss_dssp             GGEEEEEEEEEE
T ss_pred             HhcCCCeEEEEe
Confidence            999999999883

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.29  E-value=1.5e-11  Score=112.17  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=93.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|.++             ..++.    .             .+..+++++|+++.+++
T Consensus       211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s-------------~~la~----~-------------~p~~~V~gvD~s~~al~  260 (375)
T 4dcm_A          211 ARFFMQHLPENLEGEIVDLGCGNGVIG-------------LTLLD----K-------------NPQAKVVFVDESPMAVA  260 (375)
T ss_dssp             HHHHHHTCCCSCCSEEEEETCTTCHHH-------------HHHHH----H-------------CTTCEEEEEESCHHHHH
T ss_pred             HHHHHHhCcccCCCeEEEEeCcchHHH-------------HHHHH----H-------------CCCCEEEEEECcHHHHH
Confidence            456778888777789999999999988             44433    0             02568999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCC-CCeeEEecccCCCCCCCCceeEEeeeehhhcccc-----HH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN-PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-----ID  185 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~-----~~  185 (241)
                      .+++++.                         ..++.. .++++...|+.. +.+.++||+|+++..+++...     ..
T Consensus       261 ~Ar~n~~-------------------------~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~  314 (375)
T 4dcm_A          261 SSRLNVE-------------------------TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAW  314 (375)
T ss_dssp             HHHHHHH-------------------------HHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHH
T ss_pred             HHHHHHH-------------------------HcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHH
Confidence            9999887                         333321 147788999877 455678999999888775322     24


Q ss_pred             HHHHHHHHhccCCcEEEEEecCHHHHHHHHH
Q psy1420         186 KALSEAYRVLKPGGRFLCLEFSHEEFKSMIE  216 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~  216 (241)
                      ++++++.++|||||+++++..........++
T Consensus       315 ~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~  345 (375)
T 4dcm_A          315 EMFHHARRCLKINGELYIVANRHLDYFHKLK  345 (375)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEETTSCHHHHHH
T ss_pred             HHHHHHHHhCCCCcEEEEEEECCcCHHHHHH
Confidence            7899999999999999997765533333443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.29  E-value=5.8e-12  Score=110.34  Aligned_cols=137  Identities=13%  Similarity=0.110  Sum_probs=84.4

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|+|+|||||..+             ..++-.+.+.+...+         ...+++|+|+|+.+++.|++.+.....
T Consensus       105 ~~~rIld~GCgTGee~-------------ysiAi~L~e~~~~~~---------~~~~I~atDis~~~L~~Ar~~~y~~~~  162 (274)
T 1af7_A          105 GEYRVWSAAASTGEEP-------------YSIAITLADALGMAP---------GRWKVFASDIDTEVLEKARSGIYRLSE  162 (274)
T ss_dssp             SCEEEEESCCTTTHHH-------------HHHHHHHHHHHCSCT---------TSEEEEEEESCHHHHHHHHHTEEEGGG
T ss_pred             CCcEEEEeeccCChhH-------------HHHHHHHHHhcccCC---------CCeEEEEEECCHHHHHHHHhcCCchhh
Confidence            4579999999999865             222221111111110         124799999999999999987531000


Q ss_pred             ccc-cccc-cceecc-e---eeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420         123 ESD-SYSA-YTIAFG-I---RNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRI--DKALSEAYR  193 (241)
Q Consensus       123 ~~~-~~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~~--~~~l~~~~~  193 (241)
                      ..+ +..+ ..+... .   .+.... +..+. .++.|.+.|+.+.|++ .++||+|+|.+++.++++.  .++++++++
T Consensus       163 ~~~~~~~~~~~~f~~~~~~~~~~~~v-~~~lr-~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~  240 (274)
T 1af7_A          163 LKTLSPQQLQRYFMRGTGPHEGLVRV-RQELA-NYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVP  240 (274)
T ss_dssp             GTTSCHHHHHHHEEECCTTSCSEEEE-CHHHH-TTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGG
T ss_pred             hhcCCHHHHHHHhhccccCCCCceee-chhhc-ccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHH
Confidence            000 0000 000000 0   000000 00111 3689999999886654 5689999999999988766  799999999


Q ss_pred             hccCCcEEEE
Q psy1420         194 VLKPGGRFLC  203 (241)
Q Consensus       194 ~LkpgG~l~i  203 (241)
                      .|+|||+|++
T Consensus       241 ~L~pgG~L~l  250 (274)
T 1af7_A          241 LLKPDGLLFA  250 (274)
T ss_dssp             GEEEEEEEEE
T ss_pred             HhCCCcEEEE
Confidence            9999999987

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.28  E-value=1e-11  Score=103.45  Aligned_cols=127  Identities=16%  Similarity=0.227  Sum_probs=92.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|||+|||+|.++             ..+..       .          .+..++.++|+++.|++.+++++.   
T Consensus        48 ~~~~~VLDlGCG~GplA-------------l~l~~-------~----------~p~a~~~A~Di~~~~leiar~~~~---   94 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLA-------------LYQWN-------E----------NEKIIYHAYDIDRAEIAFLSSIIG---   94 (200)
T ss_dssp             CCCSEEEEETCTTHHHH-------------HHHHC-------S----------SCCCEEEEECSCHHHHHHHHHHHH---
T ss_pred             CCCCeEEEecCCCCHHH-------------HHHHh-------c----------CCCCEEEEEeCCHHHHHHHHHHHH---
Confidence            44679999999999998             33322       1          135699999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..+.. .++++  .|.... .+.++||+|+...++|++.+.+..+..+.+.|+|||.+
T Consensus        95 ----------------------~~g~~-~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvf  148 (200)
T 3fzg_A           95 ----------------------KLKTT-IKYRF--LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFV  148 (200)
T ss_dssp             ----------------------HSCCS-SEEEE--ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEE
T ss_pred             ----------------------hcCCC-ccEEE--eccccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEE
Confidence                                  55554 24555  454433 34678999999999999988888888999999999998


Q ss_pred             EEEecCH-------------HHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFSH-------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~~-------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +-.....             ..|++.+ ...+.+++...+
T Consensus       149 ISfptksl~Gr~~gm~~~Y~~~~~~~~-~~~~~~~~~~~~  187 (200)
T 3fzg_A          149 ISFPIKSLSGKEKGMEENYQLWFESFT-KGWIKILDSKVI  187 (200)
T ss_dssp             EEEECCCCC--CTTCCCCHHHHHHHHT-TTTSCEEEEEEE
T ss_pred             EEeChHHhcCCCcchhhhHHHHHHHhc-cCcceeeeeeee
Confidence            7655111             6666666 444544444444

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.28  E-value=3.4e-11  Score=103.11  Aligned_cols=109  Identities=12%  Similarity=0.061  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..++.    .+   +         ...+++++|+++.+++.+++++.  
T Consensus        61 ~~~~~~VLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~s~~~~~~a~~~~~--  109 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYST-------------IWMAR----EL---P---------ADGQLLTLEADAHHAQVARENLQ--  109 (248)
T ss_dssp             HHTCSEEEEECCTTSHHH-------------HHHHT----TS---C---------TTCEEEEEECCHHHHHHHHHHHH--
T ss_pred             hcCCCEEEEecCCchHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH--
Confidence            356779999999999988             43333    11   0         25689999999999999999988  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCC--CCceeEEeeeehhhccccHHHHHHHHHHhccC
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIE--SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP  197 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~--~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkp  197 (241)
                                             +.++. ++++++.+|+.+ ++..  .++||+|++..   ...+....++++.++|||
T Consensus       110 -----------------------~~g~~-~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~Lkp  162 (248)
T 3tfw_A          110 -----------------------LAGVD-QRVTLREGPALQSLESLGECPAFDLIFIDA---DKPNNPHYLRWALRYSRP  162 (248)
T ss_dssp             -----------------------HTTCT-TTEEEEESCHHHHHHTCCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCT
T ss_pred             -----------------------HcCCC-CcEEEEEcCHHHHHHhcCCCCCeEEEEECC---chHHHHHHHHHHHHhcCC
Confidence                                   56665 579999999866 3322  34899999854   345667899999999999


Q ss_pred             CcEEEEEecC
Q psy1420         198 GGRFLCLEFS  207 (241)
Q Consensus       198 gG~l~i~~~~  207 (241)
                      ||++++.+..
T Consensus       163 GG~lv~~~~~  172 (248)
T 3tfw_A          163 GTLIIGDNVV  172 (248)
T ss_dssp             TCEEEEECCS
T ss_pred             CeEEEEeCCC
Confidence            9999886543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.28  E-value=3e-11  Score=104.14  Aligned_cols=129  Identities=12%  Similarity=0.086  Sum_probs=99.7

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..++.        .         .+...++++|+++.+++.|++++.   
T Consensus        20 ~~g~~VlDIGtGsG~l~-------------i~la~--------~---------~~~~~V~avDi~~~al~~A~~N~~---   66 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLP-------------CFAVK--------N---------QTASFAIAGEVVDGPFQSAQKQVR---   66 (244)
T ss_dssp             CSSEEEEEETCSTTHHH-------------HHHHH--------T---------TSEEEEEEEESSHHHHHHHHHHHH---
T ss_pred             CCCCEEEEECCccHHHH-------------HHHHH--------h---------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence            46789999999999988             33332        0         024579999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++. +++++..+|..+...+.++||+|+++....  .-....+....+.|+++|+|
T Consensus        67 ----------------------~~gl~-~~I~v~~gD~l~~~~~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~l  121 (244)
T 3gnl_A           67 ----------------------SSGLT-EQIDVRKGNGLAVIEKKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKL  121 (244)
T ss_dssp             ----------------------HTTCT-TTEEEEECSGGGGCCGGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEE
T ss_pred             ----------------------HcCCC-ceEEEEecchhhccCccccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEE
Confidence                                  66765 579999999887654334699988654322  23567888899999999999


Q ss_pred             EEEecCH-HHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFSH-EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~~-~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++..... ..+++++.+.||.+++..-.
T Consensus       122 Ilq~~~~~~~lr~~L~~~Gf~i~~E~lv  149 (244)
T 3gnl_A          122 ILQPNIAAWQLREWSEQNNWLITSEAIL  149 (244)
T ss_dssp             EEEESSCHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEcCCChHHHHHHHHHCCCEEEEEEEE
Confidence            9876544 89999999999998766643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.27  E-value=9.5e-12  Score=98.48  Aligned_cols=118  Identities=17%  Similarity=0.184  Sum_probs=87.3

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|..+             ..++..++                ...+++++|+++ +++.        
T Consensus        20 ~~~~~~vLd~G~G~G~~~-------------~~l~~~~~----------------~~~~v~~~D~~~-~~~~--------   61 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWS-------------QYVVTQIG----------------GKGRIIACDLLP-MDPI--------   61 (180)
T ss_dssp             CCTTCEEEEESCTTCHHH-------------HHHHHHHC----------------TTCEEEEEESSC-CCCC--------
T ss_pred             CCCCCeEEEeCCCCCHHH-------------HHHHHHhC----------------CCCeEEEEECcc-cccc--------
Confidence            567889999999999988             44433110                246899999988 6421        


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeehhhccccH--------
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVTRI--------  184 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~l~~~~~~--------  184 (241)
                                                   .++++...|+...+        .+.++||+|++...+++....        
T Consensus        62 -----------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~  112 (180)
T 1ej0_A           62 -----------------------------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM  112 (180)
T ss_dssp             -----------------------------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHH
T ss_pred             -----------------------------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHH
Confidence                                         25778888988765        566789999998877765554        


Q ss_pred             ---HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420         185 ---DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       185 ---~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~  226 (241)
                         ..+++++.++|+|||.+++..+..   ..+.+.+++. |..++..
T Consensus       113 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (180)
T 1ej0_A          113 YLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVR  159 (180)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEee
Confidence               689999999999999999977655   5556666664 6655543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.27  E-value=6.9e-12  Score=104.11  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=86.4

Q ss_pred             HHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      .+.+.+.+.. .++.+|||+|||+|..+             ..++.        .          ...+++++|+++.++
T Consensus        42 ~~~l~~~l~~~~~~~~vLDlgcG~G~~~-------------~~l~~--------~----------~~~~V~~vD~s~~~l   90 (202)
T 2fpo_A           42 RETLFNWLAPVIVDAQCLDCFAGSGALG-------------LEALS--------R----------YAAGATLIEMDRAVS   90 (202)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTCTTCHHH-------------HHHHH--------T----------TCSEEEEECSCHHHH
T ss_pred             HHHHHHHHHhhcCCCeEEEeCCCcCHHH-------------HHHHh--------c----------CCCEEEEEECCHHHH
Confidence            3444444433 25679999999999988             33332        0          234799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      +.+++++.                         ..++  ++++++++|+.. ++...++||+|++...++ .......++
T Consensus        91 ~~a~~~~~-------------------------~~~~--~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-~~~~~~~l~  142 (202)
T 2fpo_A           91 QQLIKNLA-------------------------TLKA--GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-RGLLEETIN  142 (202)
T ss_dssp             HHHHHHHH-------------------------HTTC--CSEEEECSCHHHHHSSCCCCEEEEEECCSSS-TTTHHHHHH
T ss_pred             HHHHHHHH-------------------------HcCC--CcEEEEECCHHHHHhhcCCCCCEEEECCCCC-CCcHHHHHH
Confidence            99999987                         4454  268999999876 455567899999876643 456778888


Q ss_pred             HHHH--hccCCcEEEEEecCH
Q psy1420         190 EAYR--VLKPGGRFLCLEFSH  208 (241)
Q Consensus       190 ~~~~--~LkpgG~l~i~~~~~  208 (241)
                      .+.+  +|+|||++++.....
T Consensus       143 ~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          143 LLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             HHHHTTCEEEEEEEEEEEEGG
T ss_pred             HHHhcCccCCCcEEEEEECCC
Confidence            8866  599999998876544

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.27  E-value=1.2e-11  Score=109.31  Aligned_cols=129  Identities=15%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             HHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          34 IFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        34 ~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      .+++.+.. .++.+|||+|||||.++             ..++.                  ....+++++|+++.|++.
T Consensus        75 ~~l~~~~~~~~g~~vLDiGcGTG~~t-------------~~L~~------------------~ga~~V~aVDvs~~mL~~  123 (291)
T 3hp7_A           75 KALAVFNLSVEDMITIDIGASTGGFT-------------DVMLQ------------------NGAKLVYAVDVGTNQLVW  123 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEECSSSSCSCH
T ss_pred             HHHHhcCCCccccEEEecCCCccHHH-------------HHHHh------------------CCCCEEEEEECCHHHHHH
Confidence            44455554 45679999999999998             43433                  124589999999999988


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeE-EecccCCCC---CCCCceeEEeeeehhhccccHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRF-LEANAEELP---IESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      +.+...                                ++.. ...|+..++   ++..+||+|++..++++   ...+|
T Consensus       124 a~r~~~--------------------------------rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s---l~~vL  168 (291)
T 3hp7_A          124 KLRQDD--------------------------------RVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS---LNLIL  168 (291)
T ss_dssp             HHHTCT--------------------------------TEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC---GGGTH
T ss_pred             HHHhCc--------------------------------ccceecccCceecchhhCCCCCCCEEEEEeeHhh---HHHHH
Confidence            544321                                1111 112222221   22345999998877664   47899


Q ss_pred             HHHHHhccCCcEEEEE---ecCH---------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         189 SEAYRVLKPGGRFLCL---EFSH---------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~---~~~~---------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .++.++|||||+++++   +|..                     +++.++++++||.+......
T Consensus       169 ~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          169 PALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFS  232 (291)
T ss_dssp             HHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence            9999999999999987   3321                     77889999999998777654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.26  E-value=1e-11  Score=105.02  Aligned_cols=116  Identities=14%  Similarity=0.194  Sum_probs=85.6

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+......+++.+|||+|||+|..+             ..++..++                ...+++++|+++.+++.
T Consensus        46 ~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~~~~~~~~   96 (221)
T 3dr5_A           46 TTLAATTNGNGSTGAIAITPAAGLVG-------------LYILNGLA----------------DNTTLTCIDPESEHQRQ   96 (221)
T ss_dssp             HHHHHHSCCTTCCEEEEESTTHHHHH-------------HHHHHHSC----------------TTSEEEEECSCHHHHHH
T ss_pred             HHHHHhhCCCCCCCEEEEcCCchHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHH
Confidence            33444444455569999999999988             33333100                35789999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +++++.                         +.++..++++++.+|+.+. + .+.++||+|++...   ..+....+++
T Consensus        97 a~~~~~-------------------------~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~  148 (221)
T 3dr5_A           97 AKALFR-------------------------EAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVS---PMDLKALVDA  148 (221)
T ss_dssp             HHHHHH-------------------------HTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCC---TTTHHHHHHH
T ss_pred             HHHHHH-------------------------HcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCc---HHHHHHHHHH
Confidence            999988                         5555424799999997654 2 33578999997643   3456678999


Q ss_pred             HHHhccCCcEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLE  205 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~  205 (241)
                      +.++|||||++++.+
T Consensus       149 ~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          149 AWPLLRRGGALVLAD  163 (221)
T ss_dssp             HHHHEEEEEEEEETT
T ss_pred             HHHHcCCCcEEEEeC
Confidence            999999999999843

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.26  E-value=9.7e-12  Score=111.53  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=90.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+++.+...++.+|||+|||+|..+             ..++.    .   .          +..+++++|+++.++
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~-------------~~la~----~---~----------~~~~v~~vD~s~~~l  233 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLS-------------VAFAR----H---S----------PKIRLTLCDVSAPAV  233 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHH-------------HHHHH----H---C----------TTCBCEEEESBHHHH
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHH-------------HHHHH----H---C----------CCCEEEEEECCHHHH
Confidence            3566777776666779999999999988             43333    0   0          235899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-----cccHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTRID  185 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-----~~~~~  185 (241)
                      +.+++++.                         ..++.   .++...|+...+  .++||+|+++..+|+     ..+..
T Consensus       234 ~~a~~~~~-------------------------~~~~~---~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~  283 (343)
T 2pjd_A          234 EASRATLA-------------------------ANGVE---GEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQ  283 (343)
T ss_dssp             HHHHHHHH-------------------------HTTCC---CEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHH
T ss_pred             HHHHHHHH-------------------------HhCCC---CEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHH
Confidence            99999887                         43433   566788876643  568999999988774     44568


Q ss_pred             HHHHHHHHhccCCcEEEEEecCH
Q psy1420         186 KALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ++++++.++|||||.+++.....
T Consensus       284 ~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          284 TLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             HHHHHHGGGEEEEEEEEEEEETT
T ss_pred             HHHHHHHHhCCCCcEEEEEEcCC
Confidence            99999999999999999986555

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.26  E-value=5.1e-12  Score=102.04  Aligned_cols=120  Identities=14%  Similarity=0.141  Sum_probs=87.8

Q ss_pred             HHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          31 WKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        31 ~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      +.+.+.+.+. ..++.+|||+|||+|..+             ..++.                  ....+++++|+++.+
T Consensus        31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~-------------~~~~~------------------~~~~~v~~vD~~~~~   79 (187)
T 2fhp_A           31 VKESIFNMIGPYFDGGMALDLYSGSGGLA-------------IEAVS------------------RGMDKSICIEKNFAA   79 (187)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHH
T ss_pred             HHHHHHHHHHhhcCCCCEEEeCCccCHHH-------------HHHHH------------------cCCCEEEEEECCHHH
Confidence            4455555553 356789999999999988             33332                  124579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEeeeehhhccccHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRID  185 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~~~  185 (241)
                      ++.+++++.                         ..++. ++++++++|+.+..    .+.++||+|++....+ .....
T Consensus        80 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~  132 (187)
T 2fhp_A           80 LKVIKENIA-------------------------ITKEP-EKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-KQEIV  132 (187)
T ss_dssp             HHHHHHHHH-------------------------HHTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-GCCHH
T ss_pred             HHHHHHHHH-------------------------HhCCC-cceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-chhHH
Confidence            999999887                         44443 36889999987632    2256899999886643 45566


Q ss_pred             HHHHHH--HHhccCCcEEEEEecCH
Q psy1420         186 KALSEA--YRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       186 ~~l~~~--~~~LkpgG~l~i~~~~~  208 (241)
                      ..+..+  .++|+|||++++.....
T Consensus       133 ~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          133 SQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHHHHHHhcccCCCCEEEEEeCCc
Confidence            777777  88999999999876554

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.25  E-value=3.7e-11  Score=100.26  Aligned_cols=108  Identities=14%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+.            ...+++++|+++.+++.+++++.   
T Consensus        63 ~~~~~vLdiG~G~G~~~-------------~~la~----~~~------------~~~~v~~vD~~~~~~~~a~~~~~---  110 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSA-------------IAMGL----ALP------------KDGTLITCDVDEKSTALAKEYWE---  110 (225)
T ss_dssp             HTCSEEEEECCTTSHHH-------------HHHHT----TCC------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             hCCCEEEEeCCcchHHH-------------HHHHH----hCC------------CCCEEEEEeCCHHHHHHHHHHHH---
Confidence            46679999999999988             43333    100            25689999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                            ..++. ++++++++|+.+. + ..    .++||+|++...   ..+...+++.+.++|
T Consensus       111 ----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L  164 (225)
T 3tr6_A          111 ----------------------KAGLS-DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLL  164 (225)
T ss_dssp             ----------------------HTTCT-TTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHE
T ss_pred             ----------------------HCCCC-CceEEEeCCHHHHHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhc
Confidence                                  55655 4689999998543 2 11    168999996443   456778999999999


Q ss_pred             cCCcEEEEEecC
Q psy1420         196 KPGGRFLCLEFS  207 (241)
Q Consensus       196 kpgG~l~i~~~~  207 (241)
                      ||||++++.+..
T Consensus       165 ~pgG~lv~~~~~  176 (225)
T 3tr6_A          165 REGGLIAVDNVL  176 (225)
T ss_dssp             EEEEEEEEECSS
T ss_pred             CCCcEEEEeCCC
Confidence            999999986644

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.24  E-value=2.2e-11  Score=109.27  Aligned_cols=134  Identities=13%  Similarity=0.156  Sum_probs=94.7

Q ss_pred             HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      +.+.+.+. ..++.+|||+|||+|..+             ..++.                   ....++++|+|+.+++
T Consensus       142 ~~l~~~~~~~~~~~~VLDlgcGtG~~s-------------l~la~-------------------~ga~V~~VD~s~~al~  189 (332)
T 2igt_A          142 EWLKNAVETADRPLKVLNLFGYTGVAS-------------LVAAA-------------------AGAEVTHVDASKKAIG  189 (332)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHH-------------HHHHH-------------------TTCEEEEECSCHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEcccccCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHH
Confidence            33444432 346679999999999988             44433                   2348999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeee---h-------
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAF---G-------  177 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~---~-------  177 (241)
                      .+++++.                         ..++.+.+++++++|+.....    ..++||+|++.-   .       
T Consensus       190 ~a~~n~~-------------------------~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~  244 (332)
T 2igt_A          190 WAKENQV-------------------------LAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEV  244 (332)
T ss_dssp             HHHHHHH-------------------------HHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCE
T ss_pred             HHHHHHH-------------------------HcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHH
Confidence            9999987                         555552258999999876421    146899999842   1       


Q ss_pred             hhccccHHHHHHHHHHhccCCcEEEEEecC-----HHHHHHHHH----HCCCceE
Q psy1420         178 IRNVTRIDKALSEAYRVLKPGGRFLCLEFS-----HEEFKSMIE----SAGFQYV  223 (241)
Q Consensus       178 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-----~~~~~~~l~----~~Gf~~~  223 (241)
                      .+...+...++..+.++|+|||.+++....     .+.+.++++    ++|+.+.
T Consensus       245 ~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          245 WQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             EEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            223456788999999999999997765422     255555555    7888765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.23  E-value=1.5e-11  Score=103.64  Aligned_cols=114  Identities=12%  Similarity=0.166  Sum_probs=86.5

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+...+...++.+|||+|||+|..+             ..++.    ..             +..+++++|+++.+++.
T Consensus        44 ~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~la~----~~-------------~~~~v~~vD~~~~~~~~   93 (233)
T 2gpy_A           44 ESLLHLLKMAAPARILEIGTAIGYSA-------------IRMAQ----AL-------------PEATIVSIERDERRYEE   93 (233)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHH-------------HHHHH----HC-------------TTCEEEEECCCHHHHHH
T ss_pred             HHHHHHHhccCCCEEEEecCCCcHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence            33444444456779999999999988             44433    10             24689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC--CCceeEEeeeehhhccccHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE--SDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      +++++.                         ..++. .++.+..+|+... +..  .++||+|++....   .+...+++
T Consensus        94 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~---~~~~~~l~  144 (233)
T 2gpy_A           94 AHKHVK-------------------------ALGLE-SRIELLFGDALQLGEKLELYPLFDVLFIDAAK---GQYRRFFD  144 (233)
T ss_dssp             HHHHHH-------------------------HTTCT-TTEEEECSCGGGSHHHHTTSCCEEEEEEEGGG---SCHHHHHH
T ss_pred             HHHHHH-------------------------HcCCC-CcEEEEECCHHHHHHhcccCCCccEEEECCCH---HHHHHHHH
Confidence            999887                         55554 4688999998764 322  4689999987664   36788999


Q ss_pred             HHHHhccCCcEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLE  205 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~  205 (241)
                      .+.++|+|||++++.+
T Consensus       145 ~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          145 MYSPMVRPGGLILSDN  160 (233)
T ss_dssp             HHGGGEEEEEEEEEET
T ss_pred             HHHHHcCCCeEEEEEc
Confidence            9999999999999864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.23  E-value=7.8e-12  Score=106.76  Aligned_cols=132  Identities=16%  Similarity=0.179  Sum_probs=83.7

Q ss_pred             HHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      +.+++.+.. .++.+|||+|||+|.++             ..++.                  ....+++++|+|+.|++
T Consensus        26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t-------------~~la~------------------~g~~~V~gvDis~~ml~   74 (232)
T 3opn_A           26 EKALKEFHLEINGKTCLDIGSSTGGFT-------------DVMLQ------------------NGAKLVYALDVGTNQLA   74 (232)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEECSSCCCCC
T ss_pred             HHHHHHcCCCCCCCEEEEEccCCCHHH-------------HHHHh------------------cCCCEEEEEcCCHHHHH
Confidence            344455554 45669999999999988             44443                  11248999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCC-CCCCeeEEe-cccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLE-ANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      .+.++..                         +... ...++.+.. .++.........+|+++++     +   ..++.
T Consensus        75 ~a~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~-----l---~~~l~  121 (232)
T 3opn_A           75 WKIRSDE-------------------------RVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS-----L---DLILP  121 (232)
T ss_dssp             HHHHTCT-------------------------TEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC-----G---GGTHH
T ss_pred             HHHHhCc-------------------------cccccccceEEEeCHhHcCcCCCCEEEEEEEhhh-----H---HHHHH
Confidence            8776543                         1000 000122222 2222211122345555543     2   67999


Q ss_pred             HHHHhccCCcEEEEEe---cC---------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLE---FS---------------------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~---~~---------------------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++++|||||++++..   +.                     .+++.++++++||++..+...
T Consensus       122 ~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          122 PLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             HHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             HHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence            9999999999998862   10                     068899999999998887654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.23  E-value=1e-11  Score=105.99  Aligned_cols=141  Identities=11%  Similarity=-0.017  Sum_probs=84.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+...++.+|||+|||+|..+             ..++.    .+.           ....+++++|+++.++
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~-------------~~la~----~~~-----------~~~~~v~gvDis~~~l   90 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLL-------------TVLGL----LHR-----------RSLRQVIASDVDPAPL   90 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHH-------------HHHHH----HTG-----------GGEEEEEEEESCHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHH-------------HHHHH----Hhc-----------cCCCeEEEEECCHHHH
Confidence            3344455554456789999999999887             33333    100           0245799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecc----------eee------------ee-eccccCCCCCCeeEEecccCCCCC---
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFG----------IRN------------VT-RIDKIDIPNPRLRFLEANAEELPI---  164 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------~~-~~~~~~~~~~~~~~~~~d~~~~~~---  164 (241)
                      +.+++++......       .+...          ..+            +. .....+.. ....+.+.|+.....   
T Consensus        91 ~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~D~~~~~~~~~  162 (250)
T 1o9g_A           91 ELAAKNLALLSPA-------GLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGA-LPCAIRTADVFDPRALSA  162 (250)
T ss_dssp             HHHHHHHHTTSHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSS-CCEEEEECCTTCGGGHHH
T ss_pred             HHHHHHHHHhhhc-------cccccchhhhhhhhhcccccchhhhhhhhhhhhhccccccc-cccceeeccccccccccc
Confidence            9999887611000       00000          000            00 00000000 012288888876421   


Q ss_pred             --CCCceeEEeeeehhhcc---------ccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420         165 --ESDSYSAYTIAFGIRNV---------TRIDKALSEAYRVLKPGGRFLCLEFS  207 (241)
Q Consensus       165 --~~~~~D~V~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~  207 (241)
                        ...+||+|+++..+...         .....+++++.++|+|||+++++...
T Consensus       163 ~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          163 VLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             ccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence              33489999998655433         23568999999999999999986544

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.23  E-value=9.3e-11  Score=97.81  Aligned_cols=108  Identities=10%  Similarity=0.062  Sum_probs=81.6

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|..+             ..++.    .+   +         ...+++++|+++.+++.+++++.  
T Consensus        56 ~~~~~~vLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~~~~~~~~a~~~~~--  104 (223)
T 3duw_A           56 IQGARNILEIGTLGGYST-------------IWLAR----GL---S---------SGGRVVTLEASEKHADIARSNIE--  104 (223)
T ss_dssp             HHTCSEEEEECCTTSHHH-------------HHHHT----TC---C---------SSCEEEEEESCHHHHHHHHHHHH--
T ss_pred             hhCCCEEEEecCCccHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH--
Confidence            356779999999999988             43333    10   0         25689999999999999999987  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC---CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~---~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                             ..++. .+++++.+|+.+. + ..   .++||+|++...   .......++.+.++|
T Consensus       105 -----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L  157 (223)
T 3duw_A          105 -----------------------RANLN-DRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLS  157 (223)
T ss_dssp             -----------------------HTTCT-TTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTC
T ss_pred             -----------------------HcCCC-CcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhc
Confidence                                   55655 4689999998653 1 11   257999997654   345678999999999


Q ss_pred             cCCcEEEEEec
Q psy1420         196 KPGGRFLCLEF  206 (241)
Q Consensus       196 kpgG~l~i~~~  206 (241)
                      +|||++++.+.
T Consensus       158 ~pgG~lv~~~~  168 (223)
T 3duw_A          158 RPGTVIIGDNV  168 (223)
T ss_dssp             CTTCEEEEESC
T ss_pred             CCCcEEEEeCC
Confidence            99999887543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.23  E-value=4e-11  Score=100.30  Aligned_cols=115  Identities=21%  Similarity=0.159  Sum_probs=84.8

Q ss_pred             HHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          33 DIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        33 ~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+++.+.  ..++.+|||+|||+|..+             ..++..++                ...+++++|+++.++
T Consensus        65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~  115 (226)
T 1i1n_A           65 AYALELLFDQLHEGAKALDVGSGSGILT-------------ACFARMVG----------------CTGKVIGIDHIKELV  115 (226)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHH-------------HHHHHHHC----------------TTCEEEEEESCHHHH
T ss_pred             HHHHHHHHhhCCCCCEEEEEcCCcCHHH-------------HHHHHHhC----------------CCcEEEEEeCCHHHH
Confidence            34555554  578889999999999988             44443111                235899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA  187 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~  187 (241)
                      +.+++++.                         ..+.   ..+++.+...|+...+...++||+|++...++++      
T Consensus       116 ~~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~------  164 (226)
T 1i1n_A          116 DDSVNNVR-------------------------KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV------  164 (226)
T ss_dssp             HHHHHHHH-------------------------HHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC------
T ss_pred             HHHHHHHH-------------------------hhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchHHH------
Confidence            99998876                         3221   0136888999987665456789999988877654      


Q ss_pred             HHHHHHhccCCcEEEEEecC
Q psy1420         188 LSEAYRVLKPGGRFLCLEFS  207 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~  207 (241)
                      ++++.++|||||++++....
T Consensus       165 ~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          165 PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CHHHHHTEEEEEEEEEEESC
T ss_pred             HHHHHHhcCCCcEEEEEEec
Confidence            36789999999999987644

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.23  E-value=2.5e-11  Score=102.61  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=84.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+.+.+...++.+|||+|||+|..+             ..++.    .              ...+++++|+++.++
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~-------------~~la~----~--------------~~~~v~~vD~~~~~~  127 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNA-------------ALISE----I--------------VKTDVYTIERIPELV  127 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHH-------------HHHHH----H--------------HCSCEEEEESCHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHH-------------HHHHH----H--------------hCCEEEEEeCCHHHH
Confidence            3455666677788889999999999988             44443    1              115799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhccccHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      +.++++..                         ..++.  ++++..+|+ ..+++. .+||+|++..+++++.+      
T Consensus       128 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~~------  173 (235)
T 1jg1_A          128 EFAKRNLE-------------------------RAGVK--NVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIPE------  173 (235)
T ss_dssp             HHHHHHHH-------------------------HTTCC--SEEEEESCG-GGCCGGGCCEEEEEECSBBSSCCH------
T ss_pred             HHHHHHHH-------------------------HcCCC--CcEEEECCc-ccCCCCCCCccEEEECCcHHHHHH------
Confidence            99999887                         44554  488888887 333333 35999999988877653      


Q ss_pred             HHHHhccCCcEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~  206 (241)
                      ++.+.|+|||++++...
T Consensus       174 ~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          174 PLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             HHHHTEEEEEEEEEEEC
T ss_pred             HHHHhcCCCcEEEEEEe
Confidence            68899999999998654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.23  E-value=3.1e-11  Score=112.02  Aligned_cols=119  Identities=8%  Similarity=0.033  Sum_probs=87.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+++.+...++.+|||+|||+|..+             ..++.    ..             ....++|+|+++.++
T Consensus       230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la-------------~~LA~----~~-------------g~~~V~GVDis~~~l  279 (433)
T 1u2z_A          230 FLSDVYQQCQLKKGDTFMDLGSGVGNCV-------------VQAAL----EC-------------GCALSFGCEIMDDAS  279 (433)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHH-------------HHHHH----HH-------------CCSEEEEEECCHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHH-------------HHHHH----HC-------------CCCEEEEEeCCHHHH
Confidence            3456777778888999999999999988             44333    10             134699999999998


Q ss_pred             HHH-------HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CC--CCCceeEEeeeehhh
Q psy1420         111 RFL-------EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PI--ESDSYSAYTIAFGIR  179 (241)
Q Consensus       111 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~--~~~~~D~V~~~~~l~  179 (241)
                      +.|       ++++.                         ..++...+++++.+|....  ++  ...+||+|+++..+ 
T Consensus       280 ~~A~~Ml~~ar~~~~-------------------------~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-  333 (433)
T 1u2z_A          280 DLTILQYEELKKRCK-------------------------LYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-  333 (433)
T ss_dssp             HHHHHHHHHHHHHHH-------------------------HTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-
T ss_pred             HHHHHhHHHHHHHHH-------------------------HcCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-
Confidence            888       66666                         4443213688887754422  11  13689999987666 


Q ss_pred             ccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         180 NVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       180 ~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      +.+++...|.++.+.|||||++++.+
T Consensus       334 ~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          334 FDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEEee
Confidence            45778889999999999999999864

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.23  E-value=2.9e-12  Score=101.88  Aligned_cols=104  Identities=13%  Similarity=0.233  Sum_probs=78.2

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                   ....++++|+++.+++.+++++.    
T Consensus        41 ~~~~vLD~GcG~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~~~~a~~~~~----   84 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVG-------------LEAAS-------------------EGWEAVLVEKDPEAVRLLKENVR----   84 (171)
T ss_dssp             TCCEEEEETCSSCHHH-------------HHHHH-------------------TTCEEEEECCCHHHHHHHHHHHH----
T ss_pred             CCCeEEEeCCCcCHHH-------------HHHHH-------------------CCCeEEEEeCCHHHHHHHHHHHH----
Confidence            6779999999999988             44433                   22349999999999999999887    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C--CCCceeEEeeeehhhccccHHHHHHHHH--Hhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I--ESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~--~~~~~D~V~~~~~l~~~~~~~~~l~~~~--~~Lk  196 (241)
                                           ..++   ++++.+.|+.+. + .  ..++||+|++...++  ......++.+.  ++||
T Consensus        85 ---------------------~~~~---~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~  138 (171)
T 1ws6_A           85 ---------------------RTGL---GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVE  138 (171)
T ss_dssp             ---------------------HHTC---CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEE
T ss_pred             ---------------------HcCC---ceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccC
Confidence                                 4333   478888887763 2 1  124799999987665  55566677777  9999


Q ss_pred             CCcEEEEEecCH
Q psy1420         197 PGGRFLCLEFSH  208 (241)
Q Consensus       197 pgG~l~i~~~~~  208 (241)
                      |||++++.....
T Consensus       139 ~gG~~~~~~~~~  150 (171)
T 1ws6_A          139 AGGLYVLQHPKD  150 (171)
T ss_dssp             EEEEEEEEEETT
T ss_pred             CCcEEEEEeCCc
Confidence            999999876554

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.21  E-value=7.5e-10  Score=91.10  Aligned_cols=127  Identities=9%  Similarity=0.105  Sum_probs=92.9

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|..+             ..++.                  .....++++|+++.+++.+++++. 
T Consensus        46 ~~~~~~~vlD~g~G~G~~~-------------~~l~~------------------~~~~~v~~vD~~~~~~~~a~~~~~-   93 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLS-------------YGALL------------------LGAKEVICVEVDKEAVDVLIENLG-   93 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHTG-
T ss_pred             CCCCcCEEEEeeCCCCHHH-------------HHHHH------------------cCCCEEEEEECCHHHHHHHHHHHH-
Confidence            4557789999999999988             44333                  112469999999999999999877 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccC
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKP  197 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~Lkp  197 (241)
                                              ..++   +++++++|+..++   .+||+|+++...+...  .....++.+.+++  
T Consensus        94 ------------------------~~~~---~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--  141 (207)
T 1wy7_A           94 ------------------------EFKG---KFKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--  141 (207)
T ss_dssp             ------------------------GGTT---SEEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--
T ss_pred             ------------------------HcCC---CEEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--
Confidence                                    4333   4889999998864   4799999987665543  3457888898888  


Q ss_pred             CcEEEEEec-CH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420         198 GGRFLCLEF-SH---EEFKSMIESAGFQYVTYENLTFG  231 (241)
Q Consensus       198 gG~l~i~~~-~~---~~~~~~l~~~Gf~~~~~~~~~~~  231 (241)
                      |+.+ +... ..   +.+.+.+++.||++..+....++
T Consensus       142 ~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  178 (207)
T 1wy7_A          142 DVVY-SIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKIE  178 (207)
T ss_dssp             SEEE-EEEECCHHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CcEE-EEEeCCcCCHHHHHHHHHHCCCeEEEEEEEecC
Confidence            5544 4332 22   66778889999988777665544

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.21  E-value=9.1e-11  Score=109.15  Aligned_cols=135  Identities=19%  Similarity=0.270  Sum_probs=100.0

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+.+.++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++
T Consensus       251 ~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~~~~----------------~~~~v~a~D~s~~~l~~~~  301 (450)
T 2yxl_A          251 ASIVLDPKPGETVVDLAAAPGGKT-------------THLAELMK----------------NKGKIYAFDVDKMRMKRLK  301 (450)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHTT----------------TCSEEEEECSCHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEeCCCccHHH-------------HHHHHHcC----------------CCCEEEEEcCCHHHHHHHH
Confidence            344567788899999999999988             44444111                2368999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeee------ehhhccccH--
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIA------FGIRNVTRI--  184 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~------~~l~~~~~~--  184 (241)
                      +++.                         +.++.  ++.+.++|+...+  ++.++||+|++.      ..++..++.  
T Consensus       302 ~~~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~  354 (450)
T 2yxl_A          302 DFVK-------------------------RMGIK--IVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRW  354 (450)
T ss_dssp             HHHH-------------------------HTTCC--SEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHH
T ss_pred             HHHH-------------------------HcCCC--cEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhh
Confidence            9988                         55654  6889999988775  444689999962      223333332  


Q ss_pred             --------------HHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420         185 --------------DKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY  225 (241)
Q Consensus       185 --------------~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~  225 (241)
                                    ..+++.+.++|||||++++++.+.      +.+..++++. ||..+..
T Consensus       355 ~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~  416 (450)
T 2yxl_A          355 RLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPL  416 (450)
T ss_dssp             HCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECCC
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeec
Confidence                          578999999999999999877554      4567778776 6877654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.19  E-value=1.2e-10  Score=99.28  Aligned_cols=116  Identities=22%  Similarity=0.265  Sum_probs=85.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|.++             ..++.    .             .....++++|+++.+++.+++++.   
T Consensus        48 ~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~~~~~v~gvD~s~~~l~~a~~~~~---   94 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLM-------------IDLSP----A-------------FPEDLILGMEIRVQVTNYVEDRII---   94 (246)
T ss_dssp             SCCEEEEEETCTTSHHH-------------HHHHH----H-------------STTSEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEEcCCCCHHH-------------HHHHH----h-------------CCCCCEEEEEcCHHHHHHHHHHHH---
Confidence            46779999999999988             44443    1             024579999999999999988776   


Q ss_pred             Cccccccccceecceeeeeecccc--------CCCCCCeeEEecccCC-CC--CCCCceeEEeeeehhhccccH------
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKI--------DIPNPRLRFLEANAEE-LP--IESDSYSAYTIAFGIRNVTRI------  184 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~-~~--~~~~~~D~V~~~~~l~~~~~~------  184 (241)
                                            ..        ++.  +++++.+|+.. ++  ++.+++|.|+..+     +++      
T Consensus        95 ----------------------~~~~~~~~~~~~~--nv~~~~~D~~~~l~~~~~~~~~d~v~~~~-----p~p~~k~~~  145 (246)
T 2vdv_E           95 ----------------------ALRNNTASKHGFQ--NINVLRGNAMKFLPNFFEKGQLSKMFFCF-----PDPHFKQRK  145 (246)
T ss_dssp             ----------------------HHHHTC-CCSTTT--TEEEEECCTTSCGGGTSCTTCEEEEEEES-----CCCC-----
T ss_pred             ----------------------HHhhccccccCCC--cEEEEeccHHHHHHHhccccccCEEEEEC-----CCcccccch
Confidence                                  22        333  68999999886 55  5567899998543     333      


Q ss_pred             -------HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420         185 -------DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG  219 (241)
Q Consensus       185 -------~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G  219 (241)
                             ..+++++.++|+|||+|++.+-..   +.+.+.+...|
T Consensus       146 ~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  190 (246)
T 2vdv_E          146 HKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP  190 (246)
T ss_dssp             -CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred             hHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence                   489999999999999999865444   44555666666

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.19  E-value=1.3e-11  Score=105.35  Aligned_cols=120  Identities=10%  Similarity=0.024  Sum_probs=86.0

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.    .+..-         ....+++++|+++.+++.++ ...    
T Consensus        81 ~~~~VLDiG~GtG~~t-------------~~la~----~~~~~---------~~~~~V~gvD~s~~~l~~a~-~~~----  129 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSL-------------AWFRD----LTKIM---------GIDCQVIGIDRDLSRCQIPA-SDM----  129 (236)
T ss_dssp             CCSEEEEECCTTSHHH-------------HHHHH----HHHHT---------TCCCEEEEEESCCTTCCCCG-GGC----
T ss_pred             CCCEEEEEeCCCCHHH-------------HHHHH----hhhhc---------CCCCEEEEEeCChHHHHHHh-ccC----
Confidence            4579999999999988             33333    10000         03568999999999877654 111    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCC-CceeEEeeeehhhccccHHHHHHHHHH-hccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIES-DSYSAYTIAFGIRNVTRIDKALSEAYR-VLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~D~V~~~~~l~~~~~~~~~l~~~~~-~Lkp  197 (241)
                                                 ++++++++|+...   +... .+||+|++... +  .+...++.++.+ +|||
T Consensus       130 ---------------------------~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~Lkp  179 (236)
T 2bm8_A          130 ---------------------------ENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEE  179 (236)
T ss_dssp             ---------------------------TTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCT
T ss_pred             ---------------------------CceEEEECcchhHHHHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCC
Confidence                                       3688999998874   4333 37999997665 2  377889999997 9999


Q ss_pred             CcEEEEEec-------CHHHHHHHHHHC--CCceE
Q psy1420         198 GGRFLCLEF-------SHEEFKSMIESA--GFQYV  223 (241)
Q Consensus       198 gG~l~i~~~-------~~~~~~~~l~~~--Gf~~~  223 (241)
                      ||++++.+.       ..+.+.+++++.  +|..+
T Consensus       180 GG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~  214 (236)
T 2bm8_A          180 GDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD  214 (236)
T ss_dssp             TCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred             CCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence            999999643       336788888888  56654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.18  E-value=4.4e-11  Score=100.09  Aligned_cols=118  Identities=11%  Similarity=0.107  Sum_probs=84.0

Q ss_pred             HHHHhhc--CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          33 DIFIDRL--GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        33 ~~~~~~l--~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+++.+  ..+++.+|||+|||+|..+             ..++.    ......        ....+++++|+++.++
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~-------------~~la~----~~~~~~--------~~~~~v~~vD~~~~~~  122 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLT-------------VCMAI----KMNVLE--------NKNSYVIGLERVKDLV  122 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHH-------------HHHHH----HTTTTT--------CTTCEEEEEESCHHHH
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHH-------------HHHHH----HhcccC--------CCCCEEEEEeCCHHHH
Confidence            3444554  3567889999999999988             43333    110000        0135899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCCCC----CCCCceeEEeeeehhhcccc
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTR  183 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~  183 (241)
                      +.++++..                         ..++   ...++++..+|+....    ...++||+|++...++++  
T Consensus       123 ~~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~--  175 (227)
T 2pbf_A          123 NFSLENIK-------------------------RDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL--  175 (227)
T ss_dssp             HHHHHHHH-------------------------HHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC--
T ss_pred             HHHHHHHH-------------------------HcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHHH--
Confidence            99998876                         3331   0136889999988754    445689999998887754  


Q ss_pred             HHHHHHHHHHhccCCcEEEEEec
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                          ++.+.++|||||++++...
T Consensus       176 ----~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          176 ----PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             ----CHHHHHHEEEEEEEEEEEE
T ss_pred             ----HHHHHHhcCCCcEEEEEEc
Confidence                4778999999999988643

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.17  E-value=1.1e-10  Score=102.39  Aligned_cols=85  Identities=14%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----C--CCce
Q psy1420          96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----E--SDSY  169 (241)
Q Consensus        96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~--~~~~  169 (241)
                      +..+++++|.|+.|++.+++++.                         ..  +..+++++++|+..++.    +  ...|
T Consensus       104 P~arVv~VD~sp~mLa~Ar~~l~-------------------------~~--~~~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A          104 PESRVVYVDNDPIVLTLSQGLLA-------------------------ST--PEGRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             TTCEEEEEECCHHHHHTTHHHHC-------------------------CC--SSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             CCCEEEEEeCChHHHHHHHHHhc-------------------------cC--CCCcEEEEEecccChhhhhccccccccc
Confidence            35789999999999999998876                         21  11368999999987521    1  2345


Q ss_pred             e-----EEeeeehhhcccc---HHHHHHHHHHhccCCcEEEEEecC
Q psy1420         170 S-----AYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFS  207 (241)
Q Consensus       170 D-----~V~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~  207 (241)
                      |     .|+++.++|++++   +..+++++.+.|+|||+|++.++.
T Consensus       157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence            4     5888999999988   568999999999999999998644

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.17  E-value=1.8e-10  Score=100.22  Aligned_cols=106  Identities=12%  Similarity=0.172  Sum_probs=84.0

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|.++             ..++.    ..             ...+++++|+++.+++.+++++.  
T Consensus       117 ~~~~~~VLDlgcG~G~~s-------------~~la~----~~-------------~~~~V~~vD~s~~av~~a~~n~~--  164 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFT-------------IPLAK----YS-------------KPKLVYAIEKNPTAYHYLCENIK--  164 (272)
T ss_dssp             CCTTCEEEETTCTTTTTH-------------HHHHH----HT-------------CCSEEEEEECCHHHHHHHHHHHH--
T ss_pred             cCCCCEEEEecCcCCHHH-------------HHHHH----hC-------------CCCEEEEEeCCHHHHHHHHHHHH--
Confidence            467889999999999998             44443    00             23589999999999999999988  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                             ..++.  ++.++++|+...+. .++||+|++....    ....++..+.+.|+|||+
T Consensus       165 -----------------------~n~l~--~~~~~~~d~~~~~~-~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~  214 (272)
T 3a27_A          165 -----------------------LNKLN--NVIPILADNRDVEL-KDVADRVIMGYVH----KTHKFLDKTFEFLKDRGV  214 (272)
T ss_dssp             -----------------------HTTCS--SEEEEESCGGGCCC-TTCEEEEEECCCS----SGGGGHHHHHHHEEEEEE
T ss_pred             -----------------------HcCCC--CEEEEECChHHcCc-cCCceEEEECCcc----cHHHHHHHHHHHcCCCCE
Confidence                                   55554  57899999988743 5689999986543    566789999999999999


Q ss_pred             EEEEecCH
Q psy1420         201 FLCLEFSH  208 (241)
Q Consensus       201 l~i~~~~~  208 (241)
                      +++..+..
T Consensus       215 l~~s~~~~  222 (272)
T 3a27_A          215 IHYHETVA  222 (272)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEcCc
Confidence            99876644

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.16  E-value=6.8e-11  Score=99.27  Aligned_cols=119  Identities=17%  Similarity=0.177  Sum_probs=83.7

Q ss_pred             HHHHHhhc--CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          32 KDIFIDRL--GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        32 ~~~~~~~l--~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+++.+  ...++.+|||+|||+|..+             ..++..++    ....       ....+++++|+++.+
T Consensus        71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~-------------~~la~~~~----~~~~-------~~~~~v~~vD~~~~~  126 (227)
T 1r18_A           71 HAFALEYLRDHLKPGARILDVGSGSGYLT-------------ACFYRYIK----AKGV-------DADTRIVGIEHQAEL  126 (227)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHH-------------HHHHHHHH----HSCC-------CTTCEEEEEESCHHH
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCccHHH-------------HHHHHhcc----cccC-------CccCEEEEEEcCHHH
Confidence            34555555  3577889999999999988             44433111    0000       012479999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCCCCCCC-CceeEEeeeehhhccccHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRID  185 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~~~  185 (241)
                      ++.+++++.                         ..+.   ...++++..+|... +.+. ++||+|++...++++.   
T Consensus       127 ~~~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~---  177 (227)
T 1r18_A          127 VRRSKANLN-------------------------TDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP---  177 (227)
T ss_dssp             HHHHHHHHH-------------------------HHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC---
T ss_pred             HHHHHHHHH-------------------------hcCccccCCCceEEEECCccc-CCCcCCCccEEEECCchHHHH---
Confidence            999998876                         2220   00368888999876 3333 6899999998887754   


Q ss_pred             HHHHHHHHhccCCcEEEEEec
Q psy1420         186 KALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~  206 (241)
                         +++.+.|||||++++...
T Consensus       178 ---~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          178 ---TELINQLASGGRLIVPVG  195 (227)
T ss_dssp             ---HHHHHTEEEEEEEEEEES
T ss_pred             ---HHHHHHhcCCCEEEEEEe
Confidence               678999999999998654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.16  E-value=8.3e-12  Score=106.88  Aligned_cols=107  Identities=12%  Similarity=0.028  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++..++                ...+++++|+++.+++.+++++.   
T Consensus        59 ~~~~~VLDiG~G~G~~t-------------~~la~~~~----------------~~~~v~~iD~~~~~~~~a~~~~~---  106 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSA-------------LAMSLALP----------------DDGQVITCDINEGWTKHAHPYWR---  106 (242)
T ss_dssp             HTCSEEEEEESCCSHHH-------------HHHHHTSC----------------TTCEEEEEECCCSSCCCSHHHHH---
T ss_pred             cCcCEEEEeeCCcCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            45679999999999988             43333110                25689999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC-----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE-----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                            +.++. ++++++.+|+.+. +..     .++||+|++...   ..+....++++.++|
T Consensus       107 ----------------------~~g~~-~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~L  160 (242)
T 3r3h_A          107 ----------------------EAKQE-HKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLV  160 (242)
T ss_dssp             ----------------------HTTCT-TTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHE
T ss_pred             ----------------------HcCCC-CcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhc
Confidence                                  55665 5799999998654 211     468999998654   456678899999999


Q ss_pred             cCCcEEEEEec
Q psy1420         196 KPGGRFLCLEF  206 (241)
Q Consensus       196 kpgG~l~i~~~  206 (241)
                      +|||++++-+.
T Consensus       161 kpGG~lv~d~~  171 (242)
T 3r3h_A          161 TPKGLIAIDNI  171 (242)
T ss_dssp             EEEEEEEEECS
T ss_pred             CCCeEEEEECC
Confidence            99999998543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.16  E-value=2.9e-10  Score=103.14  Aligned_cols=126  Identities=10%  Similarity=0.091  Sum_probs=93.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+| |+|.++             ..+..    .   .          ...+++++|+++.+++.+++++.   
T Consensus       171 ~~~~~VLDlG-G~G~~~-------------~~la~----~---~----------~~~~v~~vDi~~~~l~~a~~~~~---  216 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTS-------------IALML----S---G----------LPKRIAVLDIDERLTKFIEKAAN---  216 (373)
T ss_dssp             STTCEEEEES-CTTCHH-------------HHHHH----H---T----------CCSEEEEECSCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEEC-CCCHHH-------------HHHHH----h---C----------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            4678999999 999988             33332    0   0          23589999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCC-CCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                            +.++.  +++++.+|+.. +|. ..++||+|+++..++.. ....+++++.++|||||
T Consensus       217 ----------------------~~g~~--~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG  271 (373)
T 2qm3_A          217 ----------------------EIGYE--DIEIFTFDLRKPLPDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPR  271 (373)
T ss_dssp             ----------------------HHTCC--CEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTT
T ss_pred             ----------------------HcCCC--CEEEEEChhhhhchhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCC
Confidence                                  55654  68999999988 653 34689999997554333 25889999999999999


Q ss_pred             EE-EEEecC----H---HHHHHHHH-HCCCceEEEE
Q psy1420         200 RF-LCLEFS----H---EEFKSMIE-SAGFQYVTYE  226 (241)
Q Consensus       200 ~l-~i~~~~----~---~~~~~~l~-~~Gf~~~~~~  226 (241)
                      ++ ++....    .   ..+.+.+. ..||......
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  307 (373)
T 2qm3_A          272 CAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII  307 (373)
T ss_dssp             CEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred             eEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence            54 443332    2   56677787 8999775543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.16  E-value=2.7e-11  Score=100.41  Aligned_cols=105  Identities=10%  Similarity=0.057  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+   +         ...+++++|+++.+++.+++++.   
T Consensus        55 ~~~~~vLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~~~~~~~~a~~~~~---  102 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCAS-------------WWFAR----AI---S---------ISSRVVMIDPDRDNVEHARRMLH---  102 (210)
T ss_dssp             HCCSEEEEESCGGGHHH-------------HHHHT----TS---C---------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             hCCCEEEEEcCCccHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            35669999999999988             44333    10   0         25689999999999999998877   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                            ..++. ++++++.+|+.+. +...+ ||+|++...   ..+...+++++.++|||||+
T Consensus       103 ----------------------~~~~~-~~v~~~~~d~~~~~~~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~  155 (210)
T 3c3p_A          103 ----------------------DNGLI-DRVELQVGDPLGIAAGQRD-IDILFMDCD---VFNGADVLERMNRCLAKNAL  155 (210)
T ss_dssp             ----------------------HHSGG-GGEEEEESCHHHHHTTCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEE
T ss_pred             ----------------------HCCCC-ceEEEEEecHHHHhccCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeE
Confidence                                  44443 4688999998653 43345 999998632   45678999999999999999


Q ss_pred             EEEEe
Q psy1420         201 FLCLE  205 (241)
Q Consensus       201 l~i~~  205 (241)
                      +++.+
T Consensus       156 lv~~~  160 (210)
T 3c3p_A          156 LIAVN  160 (210)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            98843

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.15  E-value=6.4e-11  Score=111.25  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=87.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.                  ....+++++|+++ +++
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la-------------~~la~------------------~~~~~V~gvD~s~-~l~  194 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILS-------------FFAAQ------------------AGARKIYAVEAST-MAQ  194 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHH-------------HHHHH------------------TTCSEEEEEECHH-HHH
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHH-------------HHHHH------------------cCCCEEEEEEcHH-HHH
Confidence            455566665567789999999999987             32222                  1245899999998 999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~  189 (241)
                      .+++++.                         ..++. ++++++.+|+.+.+.+ ++||+|++...++++.  +....+.
T Consensus       195 ~A~~~~~-------------------------~~gl~-~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~  247 (480)
T 3b3j_A          195 HAEVLVK-------------------------SNNLT-DRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYL  247 (480)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHH
T ss_pred             HHHHHHH-------------------------HcCCC-CcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHH
Confidence            9998887                         55664 5799999999987654 5899999987766553  4467788


Q ss_pred             HHHHhccCCcEEEE
Q psy1420         190 EAYRVLKPGGRFLC  203 (241)
Q Consensus       190 ~~~~~LkpgG~l~i  203 (241)
                      .+.++|||||++++
T Consensus       248 ~~~~~LkpgG~li~  261 (480)
T 3b3j_A          248 HAKKYLKPSGNMFP  261 (480)
T ss_dssp             HGGGGEEEEEEEES
T ss_pred             HHHHhcCCCCEEEE
Confidence            89999999999984

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.15  E-value=1.1e-10  Score=101.44  Aligned_cols=135  Identities=13%  Similarity=0.171  Sum_probs=97.1

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +...+.+.++.+|||+|||+|..+             ..++.    .+.            ....++++|+++.+++.++
T Consensus        75 ~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~----~~~------------~~~~v~avD~~~~~l~~~~  125 (274)
T 3ajd_A           75 PPIVLNPREDDFILDMCAAPGGKT-------------THLAQ----LMK------------NKGTIVAVEISKTRTKALK  125 (274)
T ss_dssp             HHHHHCCCTTCEEEETTCTTCHHH-------------HHHHH----HTT------------TCSEEEEEESCHHHHHHHH
T ss_pred             HHHHhCCCCcCEEEEeCCCccHHH-------------HHHHH----HcC------------CCCEEEEECCCHHHHHHHH
Confidence            344556788899999999999988             44443    110            2368999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeeh------hh-----
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFG------IR-----  179 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~------l~-----  179 (241)
                      +++.                         ..++.  ++++.+.|+...+.    ..++||+|++.-.      ++     
T Consensus       126 ~~~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~  178 (274)
T 3ajd_A          126 SNIN-------------------------RMGVL--NTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV  178 (274)
T ss_dssp             HHHH-------------------------HTTCC--SEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC-----------
T ss_pred             HHHH-------------------------HhCCC--cEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCC
Confidence            9988                         55554  68899999877643    2568999998621      11     


Q ss_pred             -------ccccHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420         180 -------NVTRIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY  225 (241)
Q Consensus       180 -------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~  225 (241)
                             ......++++.+.++|||||++++.+.+.      +.+..++++. +|+++..
T Consensus       179 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~~  238 (274)
T 3ajd_A          179 SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIII  238 (274)
T ss_dssp             -HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEecC
Confidence                   11345789999999999999999876543      4556666554 4665543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.15  E-value=2.4e-11  Score=111.56  Aligned_cols=132  Identities=10%  Similarity=0.130  Sum_probs=89.3

Q ss_pred             HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecC------CCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGG------TDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G------~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      .|++++..|++-......... ...+.++..+.. ++.+|||+|||      +|..+             ..++..   +
T Consensus       183 ~fd~lA~~Y~tDK~~~~h~y~-~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~S-------------l~la~~---~  244 (419)
T 3sso_A          183 DLSELSSRYFTPKFGFLHWFT-PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGS-------------LRMWKS---F  244 (419)
T ss_dssp             CHHHHHHHTTCTTBSSSCBCH-HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHH-------------HHHHHH---H
T ss_pred             cHHHHHHHhCCCcccccchHH-HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHH-------------HHHHHH---h
Confidence            466777777542111011111 233444444443 45799999999      66665             222220   0


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                                   .+..+++++|+++.|.      ..                              .++++++++|+.+
T Consensus       245 -------------fP~a~V~GVDiSp~m~------~~------------------------------~~rI~fv~GDa~d  275 (419)
T 3sso_A          245 -------------FPRGQIYGLDIMDKSH------VD------------------------------ELRIRTIQGDQND  275 (419)
T ss_dssp             -------------CTTCEEEEEESSCCGG------GC------------------------------BTTEEEEECCTTC
T ss_pred             -------------CCCCEEEEEECCHHHh------hc------------------------------CCCcEEEEecccc
Confidence                         0256899999999972      11                              1468999999998


Q ss_pred             CCCC------CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420         162 LPIE------SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS  207 (241)
Q Consensus       162 ~~~~------~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  207 (241)
                      +++.      .++||+|++.. .+++.+...+|++++++|||||++++.+..
T Consensus       276 lpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          276 AEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            8765      57899999864 567788899999999999999999997754

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.14  E-value=1e-10  Score=106.69  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=79.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||||||+|.++             .-.+.                  ....+++++|.|+ +.+.|++.+.   
T Consensus        82 ~~~k~VLDvG~GtGiLs-------------~~Aa~------------------aGA~~V~ave~s~-~~~~a~~~~~---  126 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILS-------------IFCAQ------------------AGARRVYAVEASA-IWQQAREVVR---  126 (376)
T ss_dssp             HTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEECST-THHHHHHHHH---
T ss_pred             cCCCEEEEeCCCccHHH-------------HHHHH------------------hCCCEEEEEeChH-HHHHHHHHHH---
Confidence            46789999999999877             22222                  1235799999986 7888888887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee---ehhhccccHHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~---~~l~~~~~~~~~l~~~~~~Lkpg  198 (241)
                                            ..++. +++++++++++++..+ +++|+|++-   ..+.+-.....++....++||||
T Consensus       127 ----------------------~n~~~-~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~  182 (376)
T 4hc4_A          127 ----------------------FNGLE-DRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEG  182 (376)
T ss_dssp             ----------------------HTTCT-TTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred             ----------------------HcCCC-ceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCC
Confidence                                  66766 6899999999998765 689999983   34445556788888899999999


Q ss_pred             cEEE
Q psy1420         199 GRFL  202 (241)
Q Consensus       199 G~l~  202 (241)
                      |.++
T Consensus       183 G~~i  186 (376)
T 4hc4_A          183 GLLL  186 (376)
T ss_dssp             EEEE
T ss_pred             ceEC
Confidence            9987

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.11  E-value=4.8e-10  Score=98.78  Aligned_cols=144  Identities=14%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++++..+  
T Consensus        90 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~~~~a~~~~~~~--  137 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTL-------------REVLK--------H---------DSVEKAILCEVDGLVIEAARKYLKQT--  137 (296)
T ss_dssp             SCCEEEEEECTTCHHH-------------HHHTT--------S---------TTCSEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CCCEEEEEcCCcCHHH-------------HHHHh--------c---------CCCCEEEEEECCHHHHHHHHHHhHhh--
Confidence            4469999999999988             44433        0         02468999999999999999876410  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccc-----cHHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~-----~~~~~l~~~~~~Lk  196 (241)
                                           ..++..++++++.+|+.. ++...++||+|++...-.+..     ....+++.+.++|+
T Consensus       138 ---------------------~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lk  196 (296)
T 1inl_A          138 ---------------------SCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK  196 (296)
T ss_dssp             ---------------------HGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEE
T ss_pred             ---------------------ccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcC
Confidence                                 011212478999999765 333356899999754322111     12688999999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEec-----CceeEEEeeec
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENLT-----FGVVAIHSGFK  240 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~~-----~~~~~~~~~~~  240 (241)
                      |||++++...+.       ..+.+.+++. |..+......     .|.-+...+.|
T Consensus       197 pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~p~g~~~f~~as~  251 (296)
T 1inl_A          197 EDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYTFASK  251 (296)
T ss_dssp             EEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred             CCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEEEEeecCccCCCceEEEEecC
Confidence            999999875432       4455556666 6666654432     35555555543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.11  E-value=1.7e-10  Score=101.06  Aligned_cols=127  Identities=13%  Similarity=0.155  Sum_probs=89.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.    .              +..+++++|+|+.+++
T Consensus       112 v~~~l~~~~~~~~~~vLDlG~GsG~~~-------------~~la~----~--------------~~~~v~~vDis~~al~  160 (284)
T 1nv8_A          112 VELALELIRKYGIKTVADIGTGSGAIG-------------VSVAK----F--------------SDAIVFATDVSSKAVE  160 (284)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCTTSHHH-------------HHHHH----H--------------SSCEEEEEESCHHHHH
T ss_pred             HHHHHHHhcccCCCEEEEEeCchhHHH-------------HHHHH----C--------------CCCEEEEEECCHHHHH
Confidence            344444443345679999999999988             44433    1              2568999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCce---eEEeeeehhh---------
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSY---SAYTIAFGIR---------  179 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---D~V~~~~~l~---------  179 (241)
                      .+++++.                         ..++. .+++++++|+... .+ ++|   |+|+++--..         
T Consensus       161 ~A~~n~~-------------------------~~~l~-~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~  212 (284)
T 1nv8_A          161 IARKNAE-------------------------RHGVS-DRFFVRKGEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKD  212 (284)
T ss_dssp             HHHHHHH-------------------------HTTCT-TSEEEEESSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTS
T ss_pred             HHHHHHH-------------------------HcCCC-CceEEEECcchhh-cc-cccCCCCEEEEcCCCCCcccccChh
Confidence            9999988                         55554 4689999998873 22 478   9999861110         


Q ss_pred             --cc--------ccHHHHHHHHH-HhccCCcEEEEEecCH---HHHHHHHHHC
Q psy1420         180 --NV--------TRIDKALSEAY-RVLKPGGRFLCLEFSH---EEFKSMIESA  218 (241)
Q Consensus       180 --~~--------~~~~~~l~~~~-~~LkpgG~l~i~~~~~---~~~~~~l~~~  218 (241)
                        +-        .+...+++++. +.|+|||++++ +...   +++.+++++.
T Consensus       213 v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~-e~~~~q~~~v~~~~~~~  264 (284)
T 1nv8_A          213 VLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGEDQVEELKKIVSDT  264 (284)
T ss_dssp             CCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTTCHHHHTTTSTTC
T ss_pred             hccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE-EECchHHHHHHHHHHhC
Confidence              11        12237899999 99999999987 4443   5566666654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.10  E-value=4.7e-10  Score=92.10  Aligned_cols=120  Identities=13%  Similarity=0.166  Sum_probs=85.3

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|..+             ..+..                  .....++++|+++.+++.+++++. 
T Consensus        48 ~~~~~~~vlD~gcG~G~~~-------------~~l~~------------------~~~~~v~~vD~~~~~~~~a~~~~~-   95 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILA-------------CGSYL------------------LGAESVTAFDIDPDAIETAKRNCG-   95 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHH-------------HHHHH------------------TTBSEEEEEESCHHHHHHHHHHCT-
T ss_pred             CCCCCCEEEEEeCCccHHH-------------HHHHH------------------cCCCEEEEEECCHHHHHHHHHhcC-
Confidence            4457789999999999988             43333                  113469999999999999987753 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccC
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKP  197 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~Lkp  197 (241)
                                                     +++++++|+..++   ++||+|+++..+++..+  ...+++++.+.+  
T Consensus        96 -------------------------------~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--  139 (200)
T 1ne2_A           96 -------------------------------GVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--  139 (200)
T ss_dssp             -------------------------------TSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE--
T ss_pred             -------------------------------CCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc--
Confidence                                           4788999988864   68999999988877654  357889999988  


Q ss_pred             CcEEEEEecC-HHHHHHHHHHCCCceEEEEEe
Q psy1420         198 GGRFLCLEFS-HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       198 gG~l~i~~~~-~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |+.+++.... ...+.+.++.+| .+..+...
T Consensus       140 g~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~  170 (200)
T 1ne2_A          140 MWIYSIGNAKARDFLRREFSARG-DVFREEKV  170 (200)
T ss_dssp             EEEEEEEEGGGHHHHHHHHHHHE-EEEEEEEE
T ss_pred             CcEEEEEcCchHHHHHHHHHHCC-CEEEEEEE
Confidence            5544443332 267788888998 66555443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.10  E-value=1.9e-10  Score=101.45  Aligned_cols=75  Identities=7%  Similarity=-0.029  Sum_probs=56.4

Q ss_pred             CeeE-EecccCCCCCCCCceeEEeeeehhhc-----------cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHH
Q psy1420         151 RLRF-LEANAEELPIESDSYSAYTIAFGIRN-----------VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMI  215 (241)
Q Consensus       151 ~~~~-~~~d~~~~~~~~~~~D~V~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l  215 (241)
                      ++++ +++|+.+++.+ ++||+|+++...+.           ......+++++.++|||||+|++..+..   +++.+.+
T Consensus       106 ~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l  184 (290)
T 2xyq_A          106 DADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM  184 (290)
T ss_dssp             SSSEEEESCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH
T ss_pred             CCEEEEECccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHH
Confidence            3677 89999887654 68999998643211           1123589999999999999999976544   7888899


Q ss_pred             HHCCCceEEEE
Q psy1420         216 ESAGFQYVTYE  226 (241)
Q Consensus       216 ~~~Gf~~~~~~  226 (241)
                      ++.||..++..
T Consensus       185 ~~~GF~~v~~~  195 (290)
T 2xyq_A          185 GHFSWWTAFVT  195 (290)
T ss_dssp             TTEEEEEEEEE
T ss_pred             HHcCCcEEEEE
Confidence            99999766654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.10  E-value=2.4e-10  Score=96.73  Aligned_cols=109  Identities=9%  Similarity=0.055  Sum_probs=80.9

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +...++.+|||+|||+|..+             ..++..++                ...+++++|+++.+++.+++++.
T Consensus        56 ~~~~~~~~VLdiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~  106 (239)
T 2hnk_A           56 TKISGAKRIIEIGTFTGYSS-------------LCFASALP----------------EDGKILCCDVSEEWTNVARKYWK  106 (239)
T ss_dssp             HHHHTCSEEEEECCTTCHHH-------------HHHHHHSC----------------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHhhCcCEEEEEeCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH
Confidence            33456779999999999988             44433100                24689999999999999999887


Q ss_pred             cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--------------CCC--CceeEEeeeehhhcc
Q psy1420         119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--------------IES--DSYSAYTIAFGIRNV  181 (241)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--------------~~~--~~~D~V~~~~~l~~~  181 (241)
                                               +.++. .++++..+|+... +              ++.  ++||+|++...   .
T Consensus       107 -------------------------~~g~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~  157 (239)
T 2hnk_A          107 -------------------------ENGLE-NKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD---K  157 (239)
T ss_dssp             -------------------------HTTCG-GGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC---G
T ss_pred             -------------------------HcCCC-CCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC---H
Confidence                                     44443 3578888886542 2              112  68999998754   3


Q ss_pred             ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         182 TRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       182 ~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .+....++.+.++|+|||++++.+
T Consensus       158 ~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          158 ENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEEc
Confidence            456688999999999999999865

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.09  E-value=2.5e-10  Score=93.43  Aligned_cols=117  Identities=11%  Similarity=0.124  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhccc-CCCceeecCChHhHHHHHHHHhc
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESI-RQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      .+++.+|||+|||+|.++             ..++.    ...            . ..+++++|+++..        . 
T Consensus        20 ~~~~~~vLDlGcG~G~~~-------------~~l~~----~~~------------~~~~~v~gvD~s~~~--------~-   61 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWC-------------QVILE----RTK------------NYKNKIIGIDKKIMD--------P-   61 (201)
T ss_dssp             CCTTEEEEEESCTTCHHH-------------HHHHH----HTT------------TSCEEEEEEESSCCC--------C-
T ss_pred             CCCCCEEEEeCCCCCHHH-------------HHHHH----HcC------------CCCceEEEEeCCccC--------C-
Confidence            367789999999999988             43333    100            1 3579999998831        0 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-------------------------CCCCceeEEee
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-------------------------IESDSYSAYTI  174 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------------------~~~~~~D~V~~  174 (241)
                                                 .  ++++++++|+...+                         ++..+||+|++
T Consensus        62 ---------------------------~--~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~  112 (201)
T 2plw_A           62 ---------------------------I--PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILS  112 (201)
T ss_dssp             ---------------------------C--TTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEE
T ss_pred             ---------------------------C--CCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEe
Confidence                                       0  24566677766654                         34568999999


Q ss_pred             eehhhcc----ccH-------HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEE
Q psy1420         175 AFGIRNV----TRI-------DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       175 ~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~  225 (241)
                      ...+++.    .+.       ..+++++.++|||||.+++..+..   .++...++. .|..+..
T Consensus       113 ~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~f~~v~~  176 (201)
T 2plw_A          113 DAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-MFQLVHT  176 (201)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-TEEEEEE
T ss_pred             CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-HHheEEE
Confidence            8766542    222       247899999999999999876654   455555554 4655444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.09  E-value=6e-10  Score=97.18  Aligned_cols=131  Identities=11%  Similarity=0.150  Sum_probs=91.2

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++++..+  
T Consensus        75 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vEid~~~v~~ar~~~~~~--  122 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVI-------------REILK--------H---------PSVKKATLVDIDGKVIEYSKKFLPSI--  122 (275)
T ss_dssp             SCCEEEEESCTTCHHH-------------HHHTT--------C---------TTCSEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CCCEEEEECCchHHHH-------------HHHHh--------C---------CCCceEEEEECCHHHHHHHHHHhHhh--
Confidence            4569999999999988             44433        1         02468999999999999999876410  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhcccc----HHHHHHHHHHhccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lkp  197 (241)
                                           ..++..++++++.+|+.. ++...++||+|++.......+.    ...+++.+.++|+|
T Consensus       123 ---------------------~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~p  181 (275)
T 1iy9_A          123 ---------------------AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKE  181 (275)
T ss_dssp             ---------------------HTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEE
T ss_pred             ---------------------ccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC
Confidence                                 012223579999999765 3333578999998644322111    26899999999999


Q ss_pred             CcEEEEEecCH-------HHHHHHHHHCCCceEEEEE
Q psy1420         198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ||++++...+.       ..+.+.+++. |..+....
T Consensus       182 gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~  217 (275)
T 1iy9_A          182 DGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYT  217 (275)
T ss_dssp             EEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEEEE
Confidence            99999875332       4555666666 77666554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.09  E-value=8.2e-11  Score=100.96  Aligned_cols=106  Identities=12%  Similarity=0.052  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+.            ...+++++|+++.+++.+++++.   
T Consensus        78 ~~~~~VLeiG~G~G~~~-------------~~la~----~~~------------~~~~v~~iD~s~~~~~~a~~~~~---  125 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSL-------------LATAL----AIP------------EDGKILAMDINKENYELGLPVIK---  125 (247)
T ss_dssp             TTCCEEEEECCGGGHHH-------------HHHHH----HSC------------TTCEEEEEESCCHHHHHHHHHHH---
T ss_pred             hCcCEEEEeCCCcCHHH-------------HHHHH----hCC------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            45669999999999988             43333    110            25689999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C-----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                                            +.++. ++++++.+|+.+. + .     +.++||+|++...   ..+....++.+.++
T Consensus       126 ----------------------~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~  179 (247)
T 1sui_A          126 ----------------------KAGVD-HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDL  179 (247)
T ss_dssp             ----------------------HTTCG-GGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHH
T ss_pred             ----------------------HcCCC-CCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHh
Confidence                                  55553 4789999997653 2 1     1468999998643   34678899999999


Q ss_pred             ccCCcEEEEEe
Q psy1420         195 LKPGGRFLCLE  205 (241)
Q Consensus       195 LkpgG~l~i~~  205 (241)
                      |||||++++.+
T Consensus       180 LkpGG~lv~d~  190 (247)
T 1sui_A          180 VKVGGVIGYDN  190 (247)
T ss_dssp             BCTTCCEEEEC
T ss_pred             CCCCeEEEEec
Confidence            99999998754

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.08  E-value=5.9e-10  Score=99.43  Aligned_cols=131  Identities=14%  Similarity=0.199  Sum_probs=88.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++++..+  
T Consensus       116 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDis~~~l~~ar~~~~~~--  163 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGII-------------RELCK--------Y---------KSVENIDICEIDETVIEVSKIYFKNI--  163 (321)
T ss_dssp             SCCEEEEEECTTCHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCTTT--
T ss_pred             CCCEEEEEcCCccHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHHHhh--
Confidence            4569999999999988             44433        1         02568999999999999999887610  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc--cccH--HHHHHHHHHhccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN--VTRI--DKALSEAYRVLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~--~~~~--~~~l~~~~~~Lkp  197 (241)
                                           ..++..++++++.+|+... +...++||+|++...-..  ....  ..+++.+.++|+|
T Consensus       164 ---------------------~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkp  222 (321)
T 2pt6_A          164 ---------------------SCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKP  222 (321)
T ss_dssp             ---------------------SGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEE
T ss_pred             ---------------------ccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCC
Confidence                                 0122124789999997653 223568999998653211  1111  6899999999999


Q ss_pred             CcEEEEEecCH-------HHHHHHHHHCCCceEEEEE
Q psy1420         198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ||++++...+.       ..+.+.+++. |..++...
T Consensus       223 gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~  258 (321)
T 2pt6_A          223 NGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYAN  258 (321)
T ss_dssp             EEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEEEE
Confidence            99999865332       3444455555 66665554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.07  E-value=2e-10  Score=107.20  Aligned_cols=136  Identities=16%  Similarity=0.141  Sum_probs=100.2

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +...+.+.++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++
T Consensus        97 ~~~~L~~~~g~~VLDlcaGpGgkt-------------~~lA~~~~----------------~~g~V~AvDis~~rl~~~~  147 (456)
T 3m4x_A           97 VGTAAAAKPGEKVLDLCAAPGGKS-------------TQLAAQMK----------------GKGLLVTNEIFPKRAKILS  147 (456)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHHT----------------TCSEEEEECSSHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHH-------------HHHHHHcC----------------CCCEEEEEeCCHHHHHHHH
Confidence            344556788999999999999988             44444111                2468999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeee------hhhcccc----
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAF------GIRNVTR----  183 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~------~l~~~~~----  183 (241)
                      +++.                         +.++.  ++.+.+.|+..++ ...++||+|++.-      .++.-++    
T Consensus       148 ~n~~-------------------------r~g~~--nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~  200 (456)
T 3m4x_A          148 ENIE-------------------------RWGVS--NAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKE  200 (456)
T ss_dssp             HHHH-------------------------HHTCS--SEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHH
T ss_pred             HHHH-------------------------HcCCC--ceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhh
Confidence            9998                         66665  5888888887764 2357899999732      1211111    


Q ss_pred             ------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCCCceEEEE
Q psy1420         184 ------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       184 ------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~  226 (241)
                                  ..++|+.+.++|||||+|+.++.+.      +.+..++++.+|+++.+.
T Consensus       201 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~~  261 (456)
T 3m4x_A          201 WTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP  261 (456)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEEecc
Confidence                        1278999999999999999876543      667888889888776654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.06  E-value=1.6e-10  Score=97.86  Aligned_cols=107  Identities=9%  Similarity=0.016  Sum_probs=80.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++..++                ...+++++|+++.+++.+++++.   
T Consensus        71 ~~~~~vLdiG~G~G~~~-------------~~la~~~~----------------~~~~v~~iD~~~~~~~~a~~~~~---  118 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSA-------------LAMALQLP----------------PDGQIIACDQDPNATAIAKKYWQ---  118 (232)
T ss_dssp             HTCCEEEEECCTTSHHH-------------HHHHTTSC----------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             cCCCEEEEecCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            45669999999999988             44433100                24689999999999999998887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCC--CceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~--~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                            +.++. .+++++.+|+.+.    +.+.  ++||+|++...   ..+....++++.++|
T Consensus       119 ----------------------~~g~~-~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~L  172 (232)
T 3cbg_A          119 ----------------------KAGVA-EKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLL  172 (232)
T ss_dssp             ----------------------HHTCG-GGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTE
T ss_pred             ----------------------HcCCC-CcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHc
Confidence                                  55554 4688888886542    2222  68999997643   356778999999999


Q ss_pred             cCCcEEEEEec
Q psy1420         196 KPGGRFLCLEF  206 (241)
Q Consensus       196 kpgG~l~i~~~  206 (241)
                      +|||++++.+.
T Consensus       173 kpgG~lv~~~~  183 (232)
T 3cbg_A          173 RRGGLMVIDNV  183 (232)
T ss_dssp             EEEEEEEEECT
T ss_pred             CCCeEEEEeCC
Confidence            99999998643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.06  E-value=5.9e-10  Score=97.65  Aligned_cols=113  Identities=15%  Similarity=0.203  Sum_probs=82.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt-------------~~L~~-------------------~~~~v~~vD~~~~~   62 (285)
T 1zq9_A           15 LIINSIIDKAALRPTDVVLEVGPGTGNMT-------------VKLLE-------------------KAKKVVACELDPRL   62 (285)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTH-------------HHHHH-------------------HSSEEEEEESCHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCcccHHH-------------HHHHh-------------------hCCEEEEEECCHHH
Confidence            34566777777788889999999999999             55544                   34589999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH-HHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID-KAL  188 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~-~~l  188 (241)
                      ++.++++..                         ..+.. ++++++++|+...+.+  +||+|+++...+...+.. ..+
T Consensus        63 ~~~a~~~~~-------------------------~~~~~-~~v~~~~~D~~~~~~~--~fD~vv~nlpy~~~~~~~~~~l  114 (285)
T 1zq9_A           63 VAELHKRVQ-------------------------GTPVA-SKLQVLVGDVLKTDLP--FFDTCVANLPYQISSPFVFKLL  114 (285)
T ss_dssp             HHHHHHHHT-------------------------TSTTG-GGEEEEESCTTTSCCC--CCSEEEEECCGGGHHHHHHHHH
T ss_pred             HHHHHHHHH-------------------------hcCCC-CceEEEEcceecccch--hhcEEEEecCcccchHHHHHHH
Confidence            999998876                         33332 3689999999887654  699999976554332221 222


Q ss_pred             --------------HHH--HHhccCCcEEE
Q psy1420         189 --------------SEA--YRVLKPGGRFL  202 (241)
Q Consensus       189 --------------~~~--~~~LkpgG~l~  202 (241)
                                    .++  +++++|||.++
T Consensus       115 ~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A          115 LHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             HCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             hcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence                          222  36899999874

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.06  E-value=3.9e-10  Score=102.95  Aligned_cols=126  Identities=9%  Similarity=0.087  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                  ....+++++|+++.+++.+++++.   
T Consensus       211 ~~~~~VLDl~cGtG~~s-------------l~la~------------------~ga~~V~~vD~s~~al~~A~~N~~---  256 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFS-------------VAAAM------------------GGAMATTSVDLAKRSRALSLAHFE---  256 (385)
T ss_dssp             TBTCEEEEETCTTTHHH-------------HHHHH------------------TTBSEEEEEESCTTHHHHHHHHHH---
T ss_pred             cCCCeEEEEeeccCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence            46779999999999988             43333                  023479999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CC---CCCceeEEeeeehh---------hccccHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PI---ESDSYSAYTIAFGI---------RNVTRIDKAL  188 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~---~~~~~D~V~~~~~l---------~~~~~~~~~l  188 (241)
                                            ..++...+++++++|+.+. +.   ...+||+|++.-..         ....+..+++
T Consensus       257 ----------------------~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll  314 (385)
T 2b78_A          257 ----------------------ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLI  314 (385)
T ss_dssp             ----------------------HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHH
T ss_pred             ----------------------HcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHH
Confidence                                  5565422689999998763 21   23589999974211         1233456678


Q ss_pred             HHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceE
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYV  223 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~  223 (241)
                      ..+.++|+|||.+++...+.        +.+.+.+..+|.+++
T Consensus       315 ~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~  357 (385)
T 2b78_A          315 RQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL  357 (385)
T ss_dssp             HHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEE
Confidence            88899999999999877555        334455666777643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.06  E-value=1.2e-10  Score=97.41  Aligned_cols=107  Identities=11%  Similarity=0.088  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+   +         ...+++++|+++.+++.+++++.   
T Consensus        68 ~~~~~vLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~~~~~~~~a~~~~~---  115 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSA-------------LALAL----AL---P---------ADGRVVTCEVDAQPPELGRPLWR---  115 (229)
T ss_dssp             TTCCEEEEECCTTSHHH-------------HHHHT----TS---C---------TTCEEEEEESCSHHHHHHHHHHH---
T ss_pred             cCCCEEEEEcCCccHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            56679999999999988             43333    10   0         25689999999999999999887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                            ..++. .+++++.+|+.+. + ..    .++||+|++...   .......++.+.++|
T Consensus       116 ----------------------~~g~~-~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L  169 (229)
T 2avd_A          116 ----------------------QAEAE-HKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLL  169 (229)
T ss_dssp             ----------------------HTTCT-TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHE
T ss_pred             ----------------------HCCCC-CeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHc
Confidence                                  55554 4789999987543 1 11    168999998543   345678999999999


Q ss_pred             cCCcEEEEEec
Q psy1420         196 KPGGRFLCLEF  206 (241)
Q Consensus       196 kpgG~l~i~~~  206 (241)
                      +|||++++.+.
T Consensus       170 ~pgG~lv~~~~  180 (229)
T 2avd_A          170 RPGGILAVLRV  180 (229)
T ss_dssp             EEEEEEEEECC
T ss_pred             CCCeEEEEECC
Confidence            99999998553

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.06  E-value=5.7e-10  Score=104.81  Aligned_cols=127  Identities=15%  Similarity=0.196  Sum_probs=93.7

Q ss_pred             hhcCCC--CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          37 DRLGPT--HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        37 ~~l~~~--~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ..+.+.  ++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++
T Consensus       109 ~~L~~~~~~g~~VLDl~aGpG~kt-------------~~lA~~~~----------------~~g~V~avDis~~~l~~~~  159 (479)
T 2frx_A          109 AALFADGNAPQRVMDVAAAPGSKT-------------TQISARMN----------------NEGAILANEFSASRVKVLH  159 (479)
T ss_dssp             HHHTTTTCCCSEEEESSCTTSHHH-------------HHHHHHTT----------------TCSEEEEECSSHHHHHHHH
T ss_pred             HHhCcccCCCCEEEEeCCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHH
Confidence            345556  8899999999999988             44444111                2468999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeee---e---hhhcccc----
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIA---F---GIRNVTR----  183 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~---~---~l~~~~~----  183 (241)
                      +++.                         +.++.  ++.+++.|+..++. ..++||+|++.   .   .++..++    
T Consensus       160 ~n~~-------------------------r~g~~--nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~  212 (479)
T 2frx_A          160 ANIS-------------------------RCGIS--NVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN  212 (479)
T ss_dssp             HHHH-------------------------HHTCC--SEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSS
T ss_pred             HHHH-------------------------HcCCC--cEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhh
Confidence            9988                         66654  68899999887653 35689999972   1   2222121    


Q ss_pred             ------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC
Q psy1420         184 ------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG  219 (241)
Q Consensus       184 ------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G  219 (241)
                                  ..++|+++.++|||||+|++++.+.      +.+..++++.+
T Consensus       213 ~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence                        2478999999999999999877544      45567777776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.05  E-value=1.2e-10  Score=111.22  Aligned_cols=120  Identities=14%  Similarity=0.157  Sum_probs=90.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||||||+|.++             ..++.                   .+..|+|+|.++.+++.|+..+.   
T Consensus        65 ~~~~~vLDvGCG~G~~~-------------~~la~-------------------~ga~V~giD~~~~~i~~a~~~a~---  109 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFS-------------LSLAS-------------------KGATIVGIDFQQENINVCRALAE---  109 (569)
T ss_dssp             TSCCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCeEEEECCCCcHHH-------------HHHHh-------------------CCCEEEEECCCHHHHHHHHHHHH---
Confidence            35679999999999988             44444                   46789999999999999998887   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHH--HHHHHHHHhccC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP  197 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~Lkp  197 (241)
                                            ..+..  ++++.+++++++  +.++++||+|+|..+++|++++.  ..+..+.+.+++
T Consensus       110 ----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~  165 (569)
T 4azs_A          110 ----------------------ENPDF--AAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLAD  165 (569)
T ss_dssp             ----------------------TSTTS--EEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ----------------------hcCCC--ceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhcc
Confidence                                  44322  589999999887  34567899999999999999875  334456677888


Q ss_pred             CcEEEEEecCH------------HHHHHHHHHCCC
Q psy1420         198 GGRFLCLEFSH------------EEFKSMIESAGF  220 (241)
Q Consensus       198 gG~l~i~~~~~------------~~~~~~l~~~Gf  220 (241)
                      +|..++.....            .+++++++...|
T Consensus       166 ~~~~~~~~~~~~e~~~~~~p~~~~~~~~~i~~~~~  200 (569)
T 4azs_A          166 VTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAF  200 (569)
T ss_dssp             HSSEEEEECCCTTSSSGGGGGSCSSGGGGTTTSSE
T ss_pred             ccceeeEEeccccccccccCCCCccHHHhcCHHHH
Confidence            88766654332            455666666655

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.05  E-value=7e-10  Score=98.78  Aligned_cols=130  Identities=12%  Similarity=0.116  Sum_probs=86.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++++.    
T Consensus       108 ~~~~VLdIG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~Ar~~~~----  153 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGIL-------------REVLK--------H---------ESVEKVTMCEIDEMVIDVAKKFLP----  153 (314)
T ss_dssp             SCCEEEEESCTTSHHH-------------HHHTT--------C---------TTCCEEEEECSCHHHHHHHHHHCT----
T ss_pred             CCCEEEEEcCCcCHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHHH----
Confidence            4569999999999988             44433        0         025689999999999999998865    


Q ss_pred             ccccccccceecceeeeeecccc--CCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccH----HHHHHHHHHhc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKI--DIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRI----DKALSEAYRVL  195 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~----~~~l~~~~~~L  195 (241)
                                           ..  ++..++++++.+|+... +...++||+|++...-+..+..    ..+++.+.++|
T Consensus       154 ---------------------~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~L  212 (314)
T 2b2c_A          154 ---------------------GMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDAL  212 (314)
T ss_dssp             ---------------------TTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHE
T ss_pred             ---------------------HhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhc
Confidence                                 21  22125789999997652 3345789999986532211111    68899999999


Q ss_pred             cCCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420         196 KPGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       196 kpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +|||++++..-+.       ..+.+.+++. |..+.....
T Consensus       213 kpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~  251 (314)
T 2b2c_A          213 KEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQS  251 (314)
T ss_dssp             EEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEE
T ss_pred             CCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcceEEEE
Confidence            9999999864221       3444555555 776665544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.05  E-value=2.5e-10  Score=106.86  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=97.5

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +...+...++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++
T Consensus        93 ~a~~L~~~~g~~VLDlgaGpG~kt-------------~~LA~~~~----------------~~g~V~AvDis~~~l~~a~  143 (464)
T 3m6w_A           93 VGVLLDPKPGERVLDLAAAPGGKT-------------THLAARMG----------------GKGLLLANEVDGKRVRGLL  143 (464)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHTT----------------TCSEEEEECSCHHHHHHHH
T ss_pred             HHHhcCcCCCCEEEEEcCCcCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHH
Confidence            444566788999999999999988             44444111                2357999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeee------ehhhcccc----
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIA------FGIRNVTR----  183 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~------~~l~~~~~----  183 (241)
                      +++.                         +.++.   +.+.++|+..++ ...++||+|++.      ..++..++    
T Consensus       144 ~n~~-------------------------r~G~~---v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~  195 (464)
T 3m6w_A          144 ENVE-------------------------RWGAP---LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARH  195 (464)
T ss_dssp             HHHH-------------------------HHCCC---CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGG
T ss_pred             HHHH-------------------------HcCCe---EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhh
Confidence            9988                         55554   778888887764 235789999952      12222122    


Q ss_pred             ------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEEE
Q psy1420         184 ------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTYE  226 (241)
Q Consensus       184 ------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~~  226 (241)
                                  ...+|+.+.++|||||+|+.++.+.      +.+..++++. +|+++...
T Consensus       196 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~~  257 (464)
T 3m6w_A          196 WGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDAR  257 (464)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEEecc
Confidence                        1678999999999999999876543      5566777776 57766543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.05  E-value=8.8e-10  Score=100.64  Aligned_cols=129  Identities=14%  Similarity=0.126  Sum_probs=94.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|.++             ..++.                  .....++++|+++.+++.+++++.   
T Consensus       219 ~~~~~VLDl~cG~G~~s-------------l~la~------------------~g~~~V~~vD~s~~al~~a~~n~~---  264 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFA-------------VSALM------------------GGCSQVVSVDTSQEALDIARQNVE---  264 (396)
T ss_dssp             CTTCEEEEESCTTCSHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH---
T ss_pred             hCCCeEEEeeccCCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence            46779999999999998             44443                  023579999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCC-CCCCeeEEecccCCCCC----CCCceeEEeeeehh---------hccccHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEELPI----ESDSYSAYTIAFGI---------RNVTRIDKA  187 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~l---------~~~~~~~~~  187 (241)
                                            ..++ . ++++++++|+.....    ...+||+|++.-..         .........
T Consensus       265 ----------------------~ngl~~-~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~  321 (396)
T 3c0k_A          265 ----------------------LNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDI  321 (396)
T ss_dssp             ----------------------HTTCCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHH
T ss_pred             ----------------------HcCCCc-cceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHH
Confidence                                  5555 3 368899999876421    14589999986321         123566789


Q ss_pred             HHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEE
Q psy1420         188 LSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      +..+.+.|+|||++++...+.        +.+.+.+.++|+....+..
T Consensus       322 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~  369 (396)
T 3c0k_A          322 NMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ  369 (396)
T ss_dssp             HHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            999999999999999876554        3344566788866544443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.04  E-value=1.7e-09  Score=94.63  Aligned_cols=133  Identities=14%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++.+..+ 
T Consensus        77 ~~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~a~~~~~~~-  125 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGII-------------RELCK--------Y---------KSVENIDICEIDETVIEVSKIYFKNI-  125 (283)
T ss_dssp             SSCCEEEEEECTTSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCTTT-
T ss_pred             CCCCeEEEEeCCcCHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHhHHh-
Confidence            45579999999999988             44433        1         02468999999999999999876511 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc--cH--HHHHHHHHHhcc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT--RI--DKALSEAYRVLK  196 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~--~~--~~~l~~~~~~Lk  196 (241)
                                            ..++..++++++.+|+... +...++||+|++.......+  ..  ..+++.+.++|+
T Consensus       126 ----------------------~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~  183 (283)
T 2i7c_A          126 ----------------------SCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK  183 (283)
T ss_dssp             ----------------------SGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEE
T ss_pred             ----------------------ccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcC
Confidence                                  0011125789999997653 22257899999865333222  22  689999999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |||++++...+.       ..+.+.+++. |..++....
T Consensus       184 pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~  221 (283)
T 2i7c_A          184 PNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYANI  221 (283)
T ss_dssp             EEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEE
T ss_pred             CCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEEEEE
Confidence            999999875332       3444455554 776655433

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.04  E-value=1.1e-09  Score=96.09  Aligned_cols=128  Identities=14%  Similarity=0.192  Sum_probs=97.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      +..+.+.+  ++|.+|||+|||+|.++             ..++.                  ....+++++|+++.+++
T Consensus       116 r~ri~~~~--~~g~~VlD~~aG~G~~~-------------i~~a~------------------~g~~~V~avD~np~a~~  162 (278)
T 3k6r_A          116 RVRMAKVA--KPDELVVDMFAGIGHLS-------------LPIAV------------------YGKAKVIAIEKDPYTFK  162 (278)
T ss_dssp             HHHHHHHC--CTTCEEEETTCTTTTTT-------------HHHHH------------------HTCCEEEEECCCHHHHH
T ss_pred             HHHHHHhc--CCCCEEEEecCcCcHHH-------------HHHHH------------------hcCCeEEEEECCHHHHH
Confidence            34454443  46889999999999998             44333                  12357999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .+++++.                         ..++. ++++++++|+...+. .+.||.|+++..    +....++..+
T Consensus       163 ~~~~N~~-------------------------~N~v~-~~v~~~~~D~~~~~~-~~~~D~Vi~~~p----~~~~~~l~~a  211 (278)
T 3k6r_A          163 FLVENIH-------------------------LNKVE-DRMSAYNMDNRDFPG-ENIADRILMGYV----VRTHEFIPKA  211 (278)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEECSCTTTCCC-CSCEEEEEECCC----SSGGGGHHHH
T ss_pred             HHHHHHH-------------------------HcCCC-CcEEEEeCcHHHhcc-ccCCCEEEECCC----CcHHHHHHHH
Confidence            9999998                         66776 679999999988753 568999987533    2334677788


Q ss_pred             HHhccCCcEEEEEecCH---------HHHHHHHHHCCCceE
Q psy1420         192 YRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYV  223 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~  223 (241)
                      .++|||||.+.+.++.+         +.++++.++.|+.+.
T Consensus       212 ~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~  252 (278)
T 3k6r_A          212 LSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             HHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             HHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEE
Confidence            89999999987654432         677888999999764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.04  E-value=8.9e-10  Score=101.73  Aligned_cols=133  Identities=15%  Similarity=0.224  Sum_probs=96.7

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+...+++.++.+|||+|||+|..+             ..++..+                 ....++++|+++.+++.+
T Consensus       237 ~~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~~~-----------------~~~~v~a~D~~~~~l~~~  286 (429)
T 1sqg_A          237 GCMTWLAPQNGEHILDLCAAPGGKT-------------THILEVA-----------------PEAQVVAVDIDEQRLSRV  286 (429)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHH-------------HHHHHHC-----------------TTCEEEEEESSTTTHHHH
T ss_pred             HHHHHcCCCCcCeEEEECCCchHHH-------------HHHHHHc-----------------CCCEEEEECCCHHHHHHH
Confidence            3445567788999999999999988             4444411                 136899999999999999


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeee------ehhhccccH-
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIA------FGIRNVTRI-  184 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~------~~l~~~~~~-  184 (241)
                      ++++.                         ..++.   +.+.+.|+...+  ++.++||+|++.      ..++..++. 
T Consensus       287 ~~~~~-------------------------~~g~~---~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~  338 (429)
T 1sqg_A          287 YDNLK-------------------------RLGMK---ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIK  338 (429)
T ss_dssp             HHHHH-------------------------HTTCC---CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHH
T ss_pred             HHHHH-------------------------HcCCC---eEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchh
Confidence            99987                         44543   678888988765  445689999962      223333332 


Q ss_pred             ---------------HHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEE
Q psy1420         185 ---------------DKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVT  224 (241)
Q Consensus       185 ---------------~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~  224 (241)
                                     ..+++.+.++|||||++++++.+.      +.+...+++. +|..+.
T Consensus       339 ~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~  400 (429)
T 1sqg_A          339 WLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE  400 (429)
T ss_dssp             HHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeC
Confidence                           478999999999999999877443      4566777765 576654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.04  E-value=9.3e-10  Score=97.74  Aligned_cols=130  Identities=18%  Similarity=0.195  Sum_probs=89.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++++..+  
T Consensus        77 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~ar~~~~~~--  124 (314)
T 1uir_A           77 EPKRVLIVGGGEGATL-------------REVLK--------H---------PTVEKAVMVDIDGELVEVAKRHMPEW--  124 (314)
T ss_dssp             CCCEEEEEECTTSHHH-------------HHHTT--------S---------TTCCEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CCCeEEEEcCCcCHHH-------------HHHHh--------c---------CCCCEEEEEECCHHHHHHHHHHhHhh--
Confidence            4569999999999988             44433        1         02468999999999999999876410  


Q ss_pred             ccccccccceecceeeeeeccccC-CCCCCeeEEecccCC-CCCCCCceeEEeeeehhhc---cc--c--HHHHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRN---VT--R--IDKALSEAYR  193 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~---~~--~--~~~~l~~~~~  193 (241)
                                           ..+ +..++++++.+|+.. ++...++||+|++....+.   .+  .  ...+++++.+
T Consensus       125 ---------------------~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~  183 (314)
T 1uir_A          125 ---------------------HQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKA  183 (314)
T ss_dssp             ---------------------HTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHH
T ss_pred             ---------------------ccccccCCceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHH
Confidence                                 011 112478999999876 3334578999998765543   11  1  3689999999


Q ss_pred             hccCCcEEEEEecC-----H---HHHHHHHHHCCCceEEEE
Q psy1420         194 VLKPGGRFLCLEFS-----H---EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       194 ~LkpgG~l~i~~~~-----~---~~~~~~l~~~Gf~~~~~~  226 (241)
                      +|||||++++...+     .   ..+.+.+++. |..+...
T Consensus       184 ~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~  223 (314)
T 1uir_A          184 HLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSY  223 (314)
T ss_dssp             TEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEE
T ss_pred             hcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEEE
Confidence            99999999886422     1   4555666666 6665544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.04  E-value=1.7e-10  Score=98.07  Aligned_cols=106  Identities=15%  Similarity=0.073  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.    .+.            ...+++++|+++.+++.+++++.   
T Consensus        69 ~~~~~VLeiG~G~G~~~-------------~~la~----~~~------------~~~~v~~iD~~~~~~~~a~~~~~---  116 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSL-------------LLTAL----SIP------------DDGKITAIDFDREAYEIGLPFIR---  116 (237)
T ss_dssp             TTCCEEEEECCTTSHHH-------------HHHHH----HSC------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             hCCCEEEEeCCCCCHHH-------------HHHHH----hCC------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            45669999999999988             44433    110            25689999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C-----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV  194 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~  194 (241)
                                            +.++. ++++++.+|+.+. + .     +.++||+|++...   ..+....++.+.++
T Consensus       117 ----------------------~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~  170 (237)
T 3c3y_A          117 ----------------------KAGVE-HKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKL  170 (237)
T ss_dssp             ----------------------HTTCG-GGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHH
T ss_pred             ----------------------HcCCC-CcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHh
Confidence                                  55654 4689999987653 2 1     1468999997632   34567899999999


Q ss_pred             ccCCcEEEEEe
Q psy1420         195 LKPGGRFLCLE  205 (241)
Q Consensus       195 LkpgG~l~i~~  205 (241)
                      |+|||++++.+
T Consensus       171 L~pGG~lv~d~  181 (237)
T 3c3y_A          171 VKVGGIVAYDN  181 (237)
T ss_dssp             EEEEEEEEEEC
T ss_pred             cCCCeEEEEec
Confidence            99999998854

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.03  E-value=6.2e-10  Score=101.24  Aligned_cols=125  Identities=22%  Similarity=0.176  Sum_probs=92.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.                   ...+++++|+++.+++.+++++.    
T Consensus       209 ~~~~VLDlg~G~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~~~~a~~n~~----  252 (382)
T 1wxx_A          209 RGERALDVFSYAGGFA-------------LHLAL-------------------GFREVVAVDSSAEALRRAEENAR----  252 (382)
T ss_dssp             CEEEEEEETCTTTHHH-------------HHHHH-------------------HEEEEEEEESCHHHHHHHHHHHH----
T ss_pred             CCCeEEEeeeccCHHH-------------HHHHH-------------------hCCEEEEEECCHHHHHHHHHHHH----
Confidence            6779999999999998             44444                   23579999999999999999988    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeeh---------hhccccHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFG---------IRNVTRIDKALS  189 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~---------l~~~~~~~~~l~  189 (241)
                                           ..++.  +++++++|+.+...    ...+||+|++.-.         .........++.
T Consensus       253 ---------------------~n~~~--~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~  309 (382)
T 1wxx_A          253 ---------------------LNGLG--NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNL  309 (382)
T ss_dssp             ---------------------HTTCT--TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHH
T ss_pred             ---------------------HcCCC--CceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHH
Confidence                                 55655  48899999876421    1468999998421         122345678999


Q ss_pred             HHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEE
Q psy1420         190 EAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~  226 (241)
                      .+.++|+|||.+++.+.+.        +.+.+.+.++|.....+.
T Consensus       310 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~  354 (382)
T 1wxx_A          310 RAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE  354 (382)
T ss_dssp             HHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            9999999999999987654        344556677886554443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.03  E-value=1.3e-09  Score=99.87  Aligned_cols=127  Identities=13%  Similarity=0.082  Sum_probs=89.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|.++             ..++.                   ....++++|+|+.+++.+++++.   
T Consensus       213 ~~g~~VLDlg~GtG~~s-------------l~~a~-------------------~ga~V~avDis~~al~~a~~n~~---  257 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFA-------------LRAAR-------------------KGAYALAVDKDLEALGVLDQAAL---  257 (393)
T ss_dssp             CTTCEEEEESCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             cCCCeEEEcccchhHHH-------------HHHHH-------------------cCCeEEEEECCHHHHHHHHHHHH---
Confidence            35789999999999998             44443                   23449999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehh---------hccccHHHHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGI---------RNVTRIDKALSEA  191 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l---------~~~~~~~~~l~~~  191 (241)
                                            ..++.   .++.++|+.+. +...+.||+|++.-..         ....+...++..+
T Consensus       258 ----------------------~ng~~---~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a  312 (393)
T 4dmg_A          258 ----------------------RLGLR---VDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREA  312 (393)
T ss_dssp             ----------------------HHTCC---CEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHH
T ss_pred             ----------------------HhCCC---CcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence                                  55554   24567887654 1213349999975322         1123556889999


Q ss_pred             HHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEe
Q psy1420         192 YRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .++|+|||+|++.+.+.        +.+.+.+..+|....-....
T Consensus       313 ~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~~~  357 (393)
T 4dmg_A          313 LRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHRVT  357 (393)
T ss_dssp             HHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEEEc
Confidence            99999999999777655        34555666777665544433

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.03  E-value=1.5e-09  Score=96.20  Aligned_cols=132  Identities=15%  Similarity=0.184  Sum_probs=87.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++++..+ 
T Consensus        94 ~~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~ar~~~~~~-  142 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVL-------------REVVK--------H---------PSVESVVQCEIDEDVIQVSKKFLPGM-  142 (304)
T ss_dssp             SSCCEEEEEECTTSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH-
T ss_pred             CCCCEEEEECCCchHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHhHHh-
Confidence            45579999999999988             44433        1         02468999999999999999876510 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccc----cHHHHHHHHHHhcc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLK  196 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~----~~~~~l~~~~~~Lk  196 (241)
                                            ..++..++++++.+|+.. ++...++||+|++....+..+    ....+++++.++|+
T Consensus       143 ----------------------~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lk  200 (304)
T 2o07_A          143 ----------------------AIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALK  200 (304)
T ss_dssp             ----------------------HGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEE
T ss_pred             ----------------------hcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccC
Confidence                                  012212578999999765 333457899999865433221    12478999999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEE
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      |||++++...+.       ..+.+.+++. |..++...
T Consensus       201 pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~  237 (304)
T 2o07_A          201 EDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAY  237 (304)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred             CCeEEEEecCCcccchHHHHHHHHHHHHh-CCCceeEE
Confidence            999999865331       3344444444 76666553

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.02  E-value=7.5e-10  Score=99.15  Aligned_cols=120  Identities=12%  Similarity=0.170  Sum_probs=92.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|.++             .. +.                   ...+++++|+++.+++.+++++.   
T Consensus       194 ~~~~~VLDlg~G~G~~~-------------l~-a~-------------------~~~~V~~vD~s~~ai~~a~~n~~---  237 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFS-------------IA-CK-------------------NAKKIYAIDINPHAIELLKKNIK---  237 (336)
T ss_dssp             CTTCEEEETTCTTSHHH-------------HH-TT-------------------TSSEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEccCccCHHH-------------Hh-cc-------------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            46789999999999988             33 32                   35679999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++. ++++++++|+....   ++||+|++...-    ....++..+.++|+|||.+
T Consensus       238 ----------------------~n~l~-~~v~~~~~D~~~~~---~~fD~Vi~dpP~----~~~~~l~~~~~~L~~gG~l  287 (336)
T 2yx1_A          238 ----------------------LNKLE-HKIIPILSDVREVD---VKGNRVIMNLPK----FAHKFIDKALDIVEEGGVI  287 (336)
T ss_dssp             ----------------------HTTCT-TTEEEEESCGGGCC---CCEEEEEECCTT----TGGGGHHHHHHHEEEEEEE
T ss_pred             ----------------------HcCCC-CcEEEEECChHHhc---CCCcEEEECCcH----hHHHHHHHHHHHcCCCCEE
Confidence                                  55654 47899999998775   789999985321    1237888999999999999


Q ss_pred             EEEecCH--HHHHHHHHHC-CCceEEEEE
Q psy1420         202 LCLEFSH--EEFKSMIESA-GFQYVTYEN  227 (241)
Q Consensus       202 ~i~~~~~--~~~~~~l~~~-Gf~~~~~~~  227 (241)
                      ++.+++.  +.+.+.++++ |+.+.....
T Consensus       288 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~  316 (336)
T 2yx1_A          288 HYYTIGKDFDKAIKLFEKKCDCEVLEKRI  316 (336)
T ss_dssp             EEEEEESSSHHHHHHHHHHSEEEEEEEEE
T ss_pred             EEEEeecCchHHHHHHHHhcCCcEEEEEE
Confidence            8876655  6667777777 776544443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.02  E-value=1e-10  Score=102.46  Aligned_cols=113  Identities=9%  Similarity=-0.010  Sum_probs=74.4

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+.+....+++.+|||+|||+|.++             ..++.                   . ..++++|+++ +...+
T Consensus        73 ~i~~~~~~~~g~~VLDlGcGtG~~s-------------~~la~-------------------~-~~V~gVD~s~-m~~~a  118 (276)
T 2wa2_A           73 WIDERGGVELKGTVVDLGCGRGSWS-------------YYAAS-------------------Q-PNVREVKAYT-LGTSG  118 (276)
T ss_dssp             HHHHTTSCCCCEEEEEESCTTCHHH-------------HHHHT-------------------S-TTEEEEEEEC-CCCTT
T ss_pred             HHHHcCCCCCCCEEEEeccCCCHHH-------------HHHHH-------------------c-CCEEEEECch-hhhhh
Confidence            3334434467889999999999998             33333                   2 5799999998 53221


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEE--ecccCCCCCCCCceeEEeeeehhhcccc-----H--
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVTR-----I--  184 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~D~V~~~~~l~~~~~-----~--  184 (241)
                      .....                        ...... .++.++  ++|+..+|  +++||+|+|..+ +...+     .  
T Consensus       119 ~~~~~------------------------~~~~~~-~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~  170 (276)
T 2wa2_A          119 HEKPR------------------------LVETFG-WNLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRT  170 (276)
T ss_dssp             SCCCC------------------------CCCCTT-GGGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHH
T ss_pred             hhchh------------------------hhhhcC-CCeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHH
Confidence            11000                        000000 157888  88988876  578999999876 33222     1  


Q ss_pred             HHHHHHHHHhccCCc--EEEEEecCH
Q psy1420         185 DKALSEAYRVLKPGG--RFLCLEFSH  208 (241)
Q Consensus       185 ~~~l~~~~~~LkpgG--~l~i~~~~~  208 (241)
                      ..+|+.+.++|||||  .+++..+..
T Consensus       171 l~~L~~~~r~LkpGG~~~~v~~~~~~  196 (276)
T 2wa2_A          171 LTVLNVISRWLEYNQGCGFCVKVLNP  196 (276)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             HHHHHHHHHHhccCCCcEEEEEeCCC
Confidence            147899999999999  998876654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.01  E-value=9.8e-10  Score=95.39  Aligned_cols=133  Identities=11%  Similarity=-0.019  Sum_probs=90.1

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      .+.+|||+|||+|..+             ..++.                  .. .+++++|+++.+++.+++.+..+  
T Consensus        72 ~~~~VL~iG~G~G~~~-------------~~ll~------------------~~-~~v~~veid~~~i~~ar~~~~~~--  117 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELA-------------HQLFK------------------YD-THIDFVQADEKILDSFISFFPHF--  117 (262)
T ss_dssp             CCCEEEEESSCCHHHH-------------HHHTT------------------SS-CEEEEECSCHHHHGGGTTTSTTH--
T ss_pred             CCCEEEEEeCCcCHHH-------------HHHHh------------------CC-CEEEEEECCHHHHHHHHHHHHhh--
Confidence            4569999999999988             54444                  12 57999999999999987654300  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                           ..++..++++++.+|+....   ++||+|++.     ..++..+++.+.++|+|||+++
T Consensus       118 ---------------------~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d-----~~dp~~~~~~~~~~L~pgG~lv  168 (262)
T 2cmg_A          118 ---------------------HEVKNNKNFTHAKQLLDLDI---KKYDLIFCL-----QEPDIHRIDGLKRMLKEDGVFI  168 (262)
T ss_dssp             ---------------------HHHHTCTTEEEESSGGGSCC---CCEEEEEES-----SCCCHHHHHHHHTTEEEEEEEE
T ss_pred             ---------------------ccccCCCeEEEEechHHHHH---hhCCEEEEC-----CCChHHHHHHHHHhcCCCcEEE
Confidence                                 00112247889999987754   689999975     3466679999999999999999


Q ss_pred             EEecCH----HHHH---HHHHHCCCceEEEEEec---CceeEEEeee
Q psy1420         203 CLEFSH----EEFK---SMIESAGFQYVTYENLT---FGVVAIHSGF  239 (241)
Q Consensus       203 i~~~~~----~~~~---~~l~~~Gf~~~~~~~~~---~~~~~~~~~~  239 (241)
                      +...+.    ..+.   ..+++. |..+......   .|..++..+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as  214 (262)
T 2cmg_A          169 SVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYAS  214 (262)
T ss_dssp             EEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEE
T ss_pred             EEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEee
Confidence            864332    2333   334443 7766554432   3555554444

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.01  E-value=4.2e-10  Score=110.26  Aligned_cols=128  Identities=12%  Similarity=0.124  Sum_probs=95.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|.++             ..++.                  ....+++++|+|+.+++.+++++.    
T Consensus       539 ~g~~VLDlg~GtG~~s-------------l~aa~------------------~ga~~V~aVD~s~~al~~a~~N~~----  583 (703)
T 3v97_A          539 KGKDFLNLFSYTGSAT-------------VHAGL------------------GGARSTTTVDMSRTYLEWAERNLR----  583 (703)
T ss_dssp             TTCEEEEESCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH----
T ss_pred             CCCcEEEeeechhHHH-------------HHHHH------------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence            5779999999999988             43332                  023469999999999999999988    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeee-----------hhhccccHHHHHHH
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAF-----------GIRNVTRIDKALSE  190 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~-----------~l~~~~~~~~~l~~  190 (241)
                                           ..++..++++++++|+.. ++...++||+|++.-           .+....+....+..
T Consensus       584 ---------------------~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~  642 (703)
T 3v97_A          584 ---------------------LNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKD  642 (703)
T ss_dssp             ---------------------HTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHH
T ss_pred             ---------------------HcCCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHH
Confidence                                 556653479999999876 333457899999853           22334567788999


Q ss_pred             HHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEE
Q psy1420         191 AYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~  226 (241)
                      +.++|+|||+|++...+.  ..-.+.+++.||+...+.
T Consensus       643 a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i~  680 (703)
T 3v97_A          643 LKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEIT  680 (703)
T ss_dssp             HHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEECT
T ss_pred             HHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeeee
Confidence            999999999999876552  223567888998754443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.00  E-value=1.3e-10  Score=101.07  Aligned_cols=113  Identities=8%  Similarity=-0.014  Sum_probs=74.2

Q ss_pred             HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      .+.+....+++.+|||+|||+|.++             ..++.                   . ..++++|+++ +...+
T Consensus        65 ~i~~~~~~~~g~~VLDlGcGtG~~s-------------~~la~-------------------~-~~V~gvD~s~-m~~~a  110 (265)
T 2oxt_A           65 WMEERGYVELTGRVVDLGCGRGGWS-------------YYAAS-------------------R-PHVMDVRAYT-LGVGG  110 (265)
T ss_dssp             HHHHHTSCCCCEEEEEESCTTSHHH-------------HHHHT-------------------S-TTEEEEEEEC-CCCSS
T ss_pred             HHHHcCCCCCCCEEEEeCcCCCHHH-------------HHHHH-------------------c-CcEEEEECch-hhhhh
Confidence            3444444567889999999999998             33333                   2 5799999988 42211


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEE--ecccCCCCCCCCceeEEeeeehhhccccH-------
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVTRI-------  184 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~D~V~~~~~l~~~~~~-------  184 (241)
                      .....    .                  ....+   .++.++  ++|+..++  +++||+|+|..+ +...++       
T Consensus       111 ~~~~~----~------------------~~~~~---~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~  162 (265)
T 2oxt_A          111 HEVPR----I------------------TESYG---WNIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERT  162 (265)
T ss_dssp             CCCCC----C------------------CCBTT---GGGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHH
T ss_pred             hhhhh----h------------------hhccC---CCeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHH
Confidence            10000    0                  00001   147788  88988876  578999999766 332221       


Q ss_pred             HHHHHHHHHhccCCc--EEEEEecCH
Q psy1420         185 DKALSEAYRVLKPGG--RFLCLEFSH  208 (241)
Q Consensus       185 ~~~l~~~~~~LkpgG--~l~i~~~~~  208 (241)
                      ..+|..+.++|||||  .+++..+..
T Consensus       163 l~~L~~~~r~LkpGG~~~fv~kv~~~  188 (265)
T 2oxt_A          163 IKILELLEKWKVKNPSADFVVKVLCP  188 (265)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred             HHHHHHHHHHhccCCCeEEEEEeCCC
Confidence            138899999999999  999877654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.00  E-value=1.2e-09  Score=97.68  Aligned_cols=128  Identities=16%  Similarity=0.172  Sum_probs=90.6

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      .+.++.+|||+|||+|.++             ..+..    .+.....        ....++|+|+++.+++.++.++. 
T Consensus       127 ~~~~~~~VlDp~cGsG~~l-------------~~~~~----~~~~~~~--------~~~~v~GiDi~~~~~~~a~~n~~-  180 (344)
T 2f8l_A          127 QKKKNVSILDPACGTANLL-------------TTVIN----QLELKGD--------VDVHASGVDVDDLLISLALVGAD-  180 (344)
T ss_dssp             TTCSEEEEEETTCTTSHHH-------------HHHHH----HHHTTSS--------CEEEEEEEESCHHHHHHHHHHHH-
T ss_pred             CCCCCCEEEeCCCCccHHH-------------HHHHH----HHHHhcC--------CCceEEEEECCHHHHHHHHHHHH-
Confidence            4456789999999999987             43333    1111000        12579999999999999998876 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH---------------
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI---------------  184 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~---------------  184 (241)
                                              ..++   ++.+.++|..... ..++||+|+++-.+.+++..               
T Consensus       181 ------------------------~~g~---~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~  232 (344)
T 2f8l_A          181 ------------------------LQRQ---KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHS  232 (344)
T ss_dssp             ------------------------HHTC---CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCE
T ss_pred             ------------------------hCCC---CceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcc
Confidence                                    3333   3677888876532 35689999998665444322               


Q ss_pred             ---HHHHHHHHHhccCCcEEEEEecC-------HHHHHHHHHHCCCc
Q psy1420         185 ---DKALSEAYRVLKPGGRFLCLEFS-------HEEFKSMIESAGFQ  221 (241)
Q Consensus       185 ---~~~l~~~~~~LkpgG~l~i~~~~-------~~~~~~~l~~~Gf~  221 (241)
                         ..++..+.+.|+|||+++++...       ...+++++.+.|+.
T Consensus       233 ~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~  279 (344)
T 2f8l_A          233 FAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHI  279 (344)
T ss_dssp             EHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEE
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeE
Confidence               25799999999999999887622       27888888888763

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.99  E-value=5.7e-10  Score=100.19  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.        .         ....+++++|+++.+++.+++++..+ 
T Consensus       119 ~~~~~VLdIG~G~G~~a-------------~~la~--------~---------~~~~~V~~VDis~~~l~~Ar~~~~~~-  167 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVL-------------REVAR--------H---------ASIEQIDMCEIDKMVVDVSKQFFPDV-  167 (334)
T ss_dssp             SCCCEEEEETCSSSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH-
T ss_pred             CCCCEEEEECCCccHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHHHhh-
Confidence            45579999999999988             44433        1         02468999999999999999876510 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehh--hcccc--HHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGI--RNVTR--IDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l--~~~~~--~~~~l~~~~~~L  195 (241)
                                            ..++..++++++.+|+...  ..+.++||+|++....  +....  ...+++.+.++|
T Consensus       168 ----------------------~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~L  225 (334)
T 1xj5_A          168 ----------------------AIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARAL  225 (334)
T ss_dssp             ----------------------HGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHE
T ss_pred             ----------------------ccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhc
Confidence                                  0122224789999997653  2335689999986432  11111  368999999999


Q ss_pred             cCCcEEEEE
Q psy1420         196 KPGGRFLCL  204 (241)
Q Consensus       196 kpgG~l~i~  204 (241)
                      +|||++++.
T Consensus       226 kpgG~lv~~  234 (334)
T 1xj5_A          226 RPGGVVCTQ  234 (334)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCcEEEEe
Confidence            999999985

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.97  E-value=1e-09  Score=90.62  Aligned_cols=114  Identities=14%  Similarity=0.206  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|.++             ..++.                   ....++++|+++..        .  
T Consensus        23 ~~~g~~VLDlG~G~G~~s-------------~~la~-------------------~~~~V~gvD~~~~~--------~--   60 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWT-------------QVLNS-------------------LARKIISIDLQEME--------E--   60 (191)
T ss_dssp             SCTTCEEEEESCTTCHHH-------------HHHTT-------------------TCSEEEEEESSCCC--------C--
T ss_pred             CCCCCEEEEEeecCCHHH-------------HHHHH-------------------cCCcEEEEeccccc--------c--
Confidence            367889999999999998             33333                   25679999998741        0  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-------C----CceeEEeeeehhh-----c----
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-------S----DSYSAYTIAFGIR-----N----  180 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~----~~~D~V~~~~~l~-----~----  180 (241)
                                                .  ++++++++|+.+.+..       .    ++||+|++.....     .    
T Consensus        61 --------------------------~--~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~  112 (191)
T 3dou_A           61 --------------------------I--AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHA  112 (191)
T ss_dssp             --------------------------C--TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHH
T ss_pred             --------------------------C--CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHH
Confidence                                      0  2578899998876421       1    4899999854221     1    


Q ss_pred             --cccHHHHHHHHHHhccCCcEEEEEecCHH---HHHHHHHHCCCceEEE
Q psy1420         181 --VTRIDKALSEAYRVLKPGGRFLCLEFSHE---EFKSMIESAGFQYVTY  225 (241)
Q Consensus       181 --~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~l~~~Gf~~~~~  225 (241)
                        ......+++.+.++|||||.|++..+..+   ++...++. .|..+++
T Consensus       113 ~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~F~~v~~  161 (191)
T 3dou_A          113 VSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-NFSSYKI  161 (191)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-GEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-hcCEEEE
Confidence              11235788999999999999998877663   44444533 3665554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.97  E-value=9.7e-09  Score=94.98  Aligned_cols=136  Identities=12%  Similarity=0.113  Sum_probs=95.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+...++.+|||+|||+|.++             ..++.                   ...+++++|+++.++
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~-------------~~la~-------------------~~~~V~gvD~s~~al  321 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFT-------------LPLAT-------------------QAASVVGVEGVPALV  321 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTH-------------HHHHT-------------------TSSEEEEEESCHHHH
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHH-------------HHHHh-------------------hCCEEEEEeCCHHHH
Confidence            4455666666677889999999999998             44443                   356899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccccHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVTRIDK  186 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~~~~~  186 (241)
                      +.+++++.                         ..++.  +++++++|+.+    ++.+.++||+|++.---...   ..
T Consensus       322 ~~A~~n~~-------------------------~~~~~--~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~  371 (433)
T 1uwv_A          322 EKGQQNAR-------------------------LNGLQ--NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AG  371 (433)
T ss_dssp             HHHHHHHH-------------------------HTTCC--SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HH
T ss_pred             HHHHHHHH-------------------------HcCCC--ceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH---HH
Confidence            99999987                         55554  68999999877    23445689999974322211   23


Q ss_pred             HHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEec
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      .++.+.+ ++|++.++++....  ..-...+.+.||++.++....
T Consensus       372 ~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~~~~~d  415 (433)
T 1uwv_A          372 VMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD  415 (433)
T ss_dssp             HHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHHHHh-cCCCeEEEEECChHHHHhhHHHHHHCCcEEEEEEEec
Confidence            4444443 68888887753322  222355677899988876653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.97  E-value=6e-10  Score=101.67  Aligned_cols=124  Identities=15%  Similarity=0.103  Sum_probs=90.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..++.                  ....+++++|+++.+++.+++++.   
T Consensus       216 ~~~~~VLDl~~G~G~~~-------------~~la~------------------~g~~~v~~vD~s~~~l~~a~~n~~---  261 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFA-------------IHAAI------------------AGADEVIGIDKSPRAIETAKENAK---  261 (396)
T ss_dssp             CTTCEEEETTCTTTHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH---
T ss_pred             hCCCeEEEecCCCCHHH-------------HHHHH------------------CCCCEEEEEeCCHHHHHHHHHHHH---
Confidence            36789999999999988             44443                  113479999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeeh---------hhccccHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFG---------IRNVTRIDKAL  188 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~---------l~~~~~~~~~l  188 (241)
                                            ..++. ++++++++|+.+...    +..+||+|++.-.         .+...+...++
T Consensus       262 ----------------------~n~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l  318 (396)
T 2as0_A          262 ----------------------LNGVE-DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVN  318 (396)
T ss_dssp             ----------------------HTTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHH
T ss_pred             ----------------------HcCCC-ccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence                                  55554 368899999876421    2468999998421         12235567899


Q ss_pred             HHHHHhccCCcEEEEEecCH----HH----HHHHHHHCCCce
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH----EE----FKSMIESAGFQY  222 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~----~~----~~~~l~~~Gf~~  222 (241)
                      ..+.++|+|||.+++.+.+.    +.    +.+.+..+|...
T Consensus       319 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~  360 (396)
T 2as0_A          319 FAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL  360 (396)
T ss_dssp             HHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred             HHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            99999999999998887654    33    344555666543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.96  E-value=9.1e-10  Score=89.56  Aligned_cols=124  Identities=16%  Similarity=0.203  Sum_probs=76.8

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .+++.+|||+|||+|.++             ..++..++.- .....       .....++++|+++.+        .  
T Consensus        20 ~~~~~~vLDlGcG~G~~~-------------~~la~~~~~~-~~~~~-------~~~~~v~~vD~s~~~--------~--   68 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWS-------------QVAVQKVNAA-GTDPS-------SPVGFVLGVDLLHIF--------P--   68 (196)
T ss_dssp             CCTTCEEEEETCCSCHHH-------------HHHHHHTTTT-CCCTT-------SCCCEEEEECSSCCC--------C--
T ss_pred             CCCCCEEEEeCCCCCHHH-------------HHHHHHhccc-ccccc-------CCCceEEEEechhcc--------c--
Confidence            467889999999999988             4444311100 00000       012679999998831        0  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEE-ecccCCCC--------CCCCceeEEeeeehhhc----cccH---
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL-EANAEELP--------IESDSYSAYTIAFGIRN----VTRI---  184 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~--------~~~~~~D~V~~~~~l~~----~~~~---  184 (241)
                                                .  .+++++ .+|+...+        .+.++||+|++...++.    ..+.   
T Consensus        69 --------------------------~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~  120 (196)
T 2nyu_A           69 --------------------------L--EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRL  120 (196)
T ss_dssp             --------------------------C--TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHH
T ss_pred             --------------------------C--CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHH
Confidence                                      0  135666 67765432        23458999998654432    2232   


Q ss_pred             ----HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEE
Q psy1420         185 ----DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVT  224 (241)
Q Consensus       185 ----~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~  224 (241)
                          ..+++++.++|||||++++..+..   .++.+.++.. |..++
T Consensus       121 ~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~  166 (196)
T 2nyu_A          121 ISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVR  166 (196)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceE
Confidence                488999999999999999987765   4455555543 54443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.96  E-value=3.5e-09  Score=92.49  Aligned_cols=141  Identities=11%  Similarity=0.083  Sum_probs=91.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|..+             ..++.                  ....+++++|+++.+++.+++++. + 
T Consensus        74 ~~~~~VLdiG~G~G~~~-------------~~l~~------------------~~~~~v~~vDid~~~i~~ar~~~~-~-  120 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTV-------------REVLQ------------------HDVDEVIMVEIDEDVIMVSKDLIK-I-  120 (281)
T ss_dssp             SCCCEEEEEECTTSHHH-------------HHHTT------------------SCCSEEEEEESCHHHHHHHHHHTC-T-
T ss_pred             CCCCeEEEEcCCcCHHH-------------HHHHh------------------CCCCEEEEEECCHHHHHHHHHHHh-h-
Confidence            34569999999999988             44443                  124589999999999999998762 1 


Q ss_pred             CccccccccceecceeeeeeccccCC-------CCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc--c--HHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDI-------PNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT--R--IDKALS  189 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~--~--~~~~l~  189 (241)
                                            ..++       ..++++++.+|+... +. .++||+|++....+..+  .  ...+++
T Consensus       121 ----------------------~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~  177 (281)
T 1mjf_A          121 ----------------------DNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYR  177 (281)
T ss_dssp             ----------------------TTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHH
T ss_pred             ----------------------ccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHH
Confidence                                  0011       124789999987642 22 56899999865432211  1  267899


Q ss_pred             HHHHhccCCcEEEEEecC----H---HHHHHHHHHCCCceEEEEEec----CceeEEEeee
Q psy1420         190 EAYRVLKPGGRFLCLEFS----H---EEFKSMIESAGFQYVTYENLT----FGVVAIHSGF  239 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~----~---~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~~~  239 (241)
                      .+.++|+|||++++...+    .   ..+.+.+++. |..+......    .|..+...+.
T Consensus       178 ~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~vP~~~g~~~~~~as  237 (281)
T 1mjf_A          178 YVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSFPVIGYASPWAFLVGV  237 (281)
T ss_dssp             HHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEECCTTSSSSEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceEEEEEecCCCCceEEEEEee
Confidence            999999999999886422    2   3444445444 7666654432    2444444444

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.93  E-value=6.8e-09  Score=92.63  Aligned_cols=126  Identities=13%  Similarity=0.121  Sum_probs=86.8

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      ..+|||+|||+|..+             ..++.    .   .          +..+++++|+++.+++.+++.+.     
T Consensus        90 ~~rVLdIG~G~G~la-------------~~la~----~---~----------p~~~v~~VEidp~vi~~Ar~~~~-----  134 (317)
T 3gjy_A           90 KLRITHLGGGACTMA-------------RYFAD----V---Y----------PQSRNTVVELDAELARLSREWFD-----  134 (317)
T ss_dssp             GCEEEEESCGGGHHH-------------HHHHH----H---S----------TTCEEEEEESCHHHHHHHHHHSC-----
T ss_pred             CCEEEEEECCcCHHH-------------HHHHH----H---C----------CCcEEEEEECCHHHHHHHHHhcc-----
Confidence            359999999999988             33332    0   1          24579999999999999998765     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhcc-c-c--HHHHHHHHHHhccC
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNV-T-R--IDKALSEAYRVLKP  197 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~-~-~--~~~~l~~~~~~Lkp  197 (241)
                                          ..  ..++++++.+|+...  ..+.++||+|++....+.. + .  ...+++.++++|+|
T Consensus       135 --------------------~~--~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~Lkp  192 (317)
T 3gjy_A          135 --------------------IP--RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAP  192 (317)
T ss_dssp             --------------------CC--CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEE
T ss_pred             --------------------cc--CCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCC
Confidence                                11  124799999997754  2345789999986433321 1 1  26899999999999


Q ss_pred             CcEEEEEecCH------HHHHHHHHHCCCceEEEEE
Q psy1420         198 GGRFLCLEFSH------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       198 gG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      ||++++...+.      ..+...+++. |..+....
T Consensus       193 gGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~~  227 (317)
T 3gjy_A          193 GGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVIA  227 (317)
T ss_dssp             EEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEEE
T ss_pred             CcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEEE
Confidence            99998865432      2344455554 66555543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.89  E-value=9.9e-09  Score=90.47  Aligned_cols=89  Identities=16%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.+
T Consensus        29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt-------------~~La~-------------------~~~~v~~vDi~~~~   76 (299)
T 2h1r_A           29 GILDKIIYAAKIKSSDIVLEIGCGTGNLT-------------VKLLP-------------------LAKKVITIDIDSRM   76 (299)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTH-------------HHHTT-------------------TSSEEEEECSCHHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCcCcHHH-------------HHHHh-------------------cCCEEEEEECCHHH
Confidence            34566777777788889999999999999             44444                   34689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR  179 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~  179 (241)
                      ++.+++++.                         ..+.  ++++++++|+...+.  .+||+|+++...+
T Consensus        77 ~~~a~~~~~-------------------------~~~~--~~v~~~~~D~~~~~~--~~~D~Vv~n~py~  117 (299)
T 2h1r_A           77 ISEVKKRCL-------------------------YEGY--NNLEVYEGDAIKTVF--PKFDVCTANIPYK  117 (299)
T ss_dssp             HHHHHHHHH-------------------------HTTC--CCEEC----CCSSCC--CCCSEEEEECCGG
T ss_pred             HHHHHHHHH-------------------------HcCC--CceEEEECchhhCCc--ccCCEEEEcCCcc
Confidence            999998876                         3343  368899999988765  3799999876554

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.89  E-value=3.3e-09  Score=93.98  Aligned_cols=56  Identities=11%  Similarity=0.132  Sum_probs=41.2

Q ss_pred             CeeEEec-ccCCCCCCCCceeEEeeeehhh---ccccHH---HHHHHHHHhccCCcEEEEEecCH
Q psy1420         151 RLRFLEA-NAEELPIESDSYSAYTIAFGIR---NVTRID---KALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       151 ~~~~~~~-d~~~~~~~~~~~D~V~~~~~l~---~~~~~~---~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ++.++++ |+..++  ..+||+|+|....+   +..+..   .+|..+.++|||||.|++..+..
T Consensus       132 ~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          132 LVRLQSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             GEEEECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CeEEEeccccccCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            5788888 877664  46899999976543   222222   58899999999999999876655

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.88  E-value=2.6e-08  Score=86.67  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=94.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|||+|||+|.++             ..+..       .          .+...|.++|+++.+++.++.++.   
T Consensus       131 ~~p~~VLDLGCG~GpLA-------------l~~~~-------~----------~p~a~y~a~DId~~~le~a~~~l~---  177 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLA-------------APWMG-------L----------PAETVYIASDIDARLVGFVDEALT---  177 (281)
T ss_dssp             CCCSEEEETTCTTGGGC-------------CTTTT-------C----------CTTCEEEEEESBHHHHHHHHHHHH---
T ss_pred             CCCceeeeeccCccHHH-------------HHHHh-------h----------CCCCEEEEEeCCHHHHHHHHHHHH---
Confidence            34669999999999988             33322       1          246789999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG  199 (241)
                                            ..++.   .++...|....+ +.+++|++++.-.++++++..  ..+ ++...|+|+|
T Consensus       178 ----------------------~~g~~---~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~  230 (281)
T 3lcv_B          178 ----------------------RLNVP---HRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPN  230 (281)
T ss_dssp             ----------------------HTTCC---EEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSE
T ss_pred             ----------------------hcCCC---ceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCC
Confidence                                  55544   677788877655 357899999999999887653  445 8999999999


Q ss_pred             EEEEEecCH-------------HHHHHHHHHCCCceEEEE
Q psy1420         200 RFLCLEFSH-------------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       200 ~l~i~~~~~-------------~~~~~~l~~~Gf~~~~~~  226 (241)
                      .++-.....             +.|++.+.+.|..+.+.+
T Consensus       231 vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~  270 (281)
T 3lcv_B          231 IVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLE  270 (281)
T ss_dssp             EEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeee
Confidence            988655411             888888999998544333

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.77  E-value=4.2e-08  Score=89.87  Aligned_cols=154  Identities=14%  Similarity=0.105  Sum_probs=97.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC--------CCc-----chhhh-----
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ--------WKP-----YQYLV-----   93 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~-----   93 (241)
                      ...++....+.++..|||++||+|.++             +..+....+...+.        |..     |+-+.     
T Consensus       190 Aa~ll~l~~~~~~~~vlDp~CGSGt~~-------------ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~  256 (393)
T 3k0b_A          190 AAALVLLTSWHPDRPFYDPVCGSGTIP-------------IEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAED  256 (393)
T ss_dssp             HHHHHHHSCCCTTSCEEETTCTTSHHH-------------HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEEEcCCCCCHHH-------------HHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHH
Confidence            456677778888899999999999987             33332111100000        000     00000     


Q ss_pred             ---cccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCcee
Q psy1420          94 ---ESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYS  170 (241)
Q Consensus        94 ---~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  170 (241)
                         ......++++|+++.+++.++.++.                         ..++. .++++.+.|+...+.+ ++||
T Consensus       257 ~~~~~~~~~V~GvDid~~al~~Ar~Na~-------------------------~~gl~-~~I~~~~~D~~~~~~~-~~fD  309 (393)
T 3k0b_A          257 LANYDQPLNIIGGDIDARLIEIAKQNAV-------------------------EAGLG-DLITFRQLQVADFQTE-DEYG  309 (393)
T ss_dssp             HCCTTCCCCEEEEESCHHHHHHHHHHHH-------------------------HTTCT-TCSEEEECCGGGCCCC-CCSC
T ss_pred             hhcccCCceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChHhCCCC-CCCC
Confidence               0022569999999999999999998                         66665 4689999999988754 5899


Q ss_pred             EEeee--ehhhcc--ccHHHHHHHHHHhccC--CcEEEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420         171 AYTIA--FGIRNV--TRIDKALSEAYRVLKP--GGRFLCLEFSHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       171 ~V~~~--~~l~~~--~~~~~~l~~~~~~Lkp--gG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +|+++  ++.+..  .+...+...+.+.||+  ||.+++.+...+    +.+..|.+..+...+.
T Consensus       310 ~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~----l~~~~g~~~~~~~~l~  370 (393)
T 3k0b_A          310 VVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYEL----FEEVYGKKATKKRKLY  370 (393)
T ss_dssp             EEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTT----HHHHHTSCCSEEEEEC
T ss_pred             EEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCHH----HHHHhCCCcccceEEe
Confidence            99998  444322  2334455555556655  898888765443    2334466655555554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.75  E-value=2.7e-08  Score=92.22  Aligned_cols=134  Identities=14%  Similarity=0.032  Sum_probs=87.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+.+.+.+.++.+|+|+|||+|.+.             ..+...    +......-.-........++|+|+++.+
T Consensus       158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl-------------~~~~~~----l~~~~~~~~~~~~~~~~~i~G~Ei~~~~  220 (445)
T 2okc_A          158 PLIQAMVDCINPQMGETVCDPACGTGGFL-------------LTAYDY----MKGQSASKEKRDFLRDKALHGVDNTPLV  220 (445)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTCHHH-------------HHHHHH----HHTCC-CCHHHHHHHHTTEEEEESCHHH
T ss_pred             HHHHHHHHHhCCCCCCEEeccCCCcchHH-------------HHHHHH----HHHhcCCHHHHHhhcCeEEEEEeCCHHH
Confidence            34566777777788889999999999987             333331    1110000000000023579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc------
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR------  183 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~------  183 (241)
                      ++.|+.++.                         ..++...+..+.++|....+.. .+||+|+++-.+.....      
T Consensus       221 ~~lA~~nl~-------------------------l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~  274 (445)
T 2okc_A          221 VTLASMNLY-------------------------LHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDIN  274 (445)
T ss_dssp             HHHHHHHHH-------------------------HTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCC
T ss_pred             HHHHHHHHH-------------------------HhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhh
Confidence            999998876                         3343211466788888776543 48999998744432111      


Q ss_pred             -----------HHHHHHHHHHhccCCcEEEEEec
Q psy1420         184 -----------IDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       184 -----------~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                                 ...++..+.++|||||++.++..
T Consensus       275 ~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          275 RPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             CTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence                       14789999999999999987763

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.75  E-value=2.2e-07  Score=79.92  Aligned_cols=102  Identities=16%  Similarity=0.061  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|.++             ..+.+                    ...++++|+++.+++.+++.+.   
T Consensus       104 ~~p~~VLDlGCG~gpLa-------------l~~~~--------------------~~~y~a~DId~~~i~~ar~~~~---  147 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLA-------------LYERG--------------------IASVWGCDIHQGLGDVITPFAR---  147 (253)
T ss_dssp             CCCSEEEEETCTTTHHH-------------HHHTT--------------------CSEEEEEESBHHHHHHHHHHHH---
T ss_pred             CCCCeEEEecCCccHHH-------------HHhcc--------------------CCeEEEEeCCHHHHHHHHHHHH---
Confidence            45779999999999888             22222                    5689999999999999999987   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH-HHHHHHHHHhccCCcE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGR  200 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~-~~~l~~~~~~LkpgG~  200 (241)
                                            ..+.   +.++...|....+.+ +++|+|++.-.+|++++. ....-++...|+++|.
T Consensus       148 ----------------------~~g~---~~~~~v~D~~~~~~~-~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~v  201 (253)
T 3frh_A          148 ----------------------EKDW---DFTFALQDVLCAPPA-EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRM  201 (253)
T ss_dssp             ----------------------HTTC---EEEEEECCTTTSCCC-CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEE
T ss_pred             ----------------------hcCC---CceEEEeecccCCCC-CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCE
Confidence                                  4442   478888998887754 589999999888887654 2333378889999988


Q ss_pred             EEEEe
Q psy1420         201 FLCLE  205 (241)
Q Consensus       201 l~i~~  205 (241)
                      ++-..
T Consensus       202 vVsfP  206 (253)
T 3frh_A          202 AVSFP  206 (253)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            87554

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.73  E-value=5e-10  Score=95.57  Aligned_cols=111  Identities=12%  Similarity=0.123  Sum_probs=78.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.++
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~-------------~~l~~-------------------~~~~v~~id~~~~~~   64 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLT-------------TKLAK-------------------ISKQVTSIELDSHLF   64 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCS-------------HHHHH-------------------HSSEEEESSSSCSSS
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHH-------------HHHHH-------------------hCCeEEEEECCHHHH
Confidence            4566777777788889999999999998             44444                   346799999999998


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehh-----------
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGI-----------  178 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l-----------  178 (241)
                      +.++++..                           .  .++++++++|+...+++. ++| .|+++...           
T Consensus        65 ~~a~~~~~---------------------------~--~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~  114 (245)
T 1yub_A           65 NLSSEKLK---------------------------L--NTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             SSSSCTTT---------------------------T--CSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHH
T ss_pred             HHHHHHhc---------------------------c--CCceEEEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHH
Confidence            87765543                           1  136889999999887653 578 56654221           


Q ss_pred             hccccHHHHH----HHHHHhccCCcEEEE
Q psy1420         179 RNVTRIDKAL----SEAYRVLKPGGRFLC  203 (241)
Q Consensus       179 ~~~~~~~~~l----~~~~~~LkpgG~l~i  203 (241)
                      .+.......+    +.+.|+|+|||.+.+
T Consensus       115 ~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A          115 FESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             HHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             hCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            1122233344    668899999998765

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.73  E-value=5e-08  Score=83.36  Aligned_cols=86  Identities=10%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..+.+.+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt-------------~~l~~-------------------~~~~v~~vD~~~~   63 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-------------LELVQ-------------------RCNFVTAIEIDHK   63 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEECSCHH
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHH-------------HHHHH-------------------cCCeEEEEECCHH
Confidence            345677777878788889999999999998             54444                   3468999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeee
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAF  176 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~  176 (241)
                      +++.++++..                         .  .  ++++++++|+...+++. ..+ .|+++.
T Consensus        64 ~~~~a~~~~~-------------------------~--~--~~v~~~~~D~~~~~~~~~~~~-~vv~nl  102 (244)
T 1qam_A           64 LCKTTENKLV-------------------------D--H--DNFQVLNKDILQFKFPKNQSY-KIFGNI  102 (244)
T ss_dssp             HHHHHHHHTT-------------------------T--C--CSEEEECCCGGGCCCCSSCCC-EEEEEC
T ss_pred             HHHHHHHhhc-------------------------c--C--CCeEEEEChHHhCCcccCCCe-EEEEeC
Confidence            9999988765                         2  1  36899999999887653 345 355443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.72  E-value=3.6e-08  Score=89.23  Aligned_cols=131  Identities=11%  Similarity=0.123  Sum_probs=90.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+.+.+... +.+|||++||+|.++             ..++.                   ...+++++|+++.++
T Consensus       202 l~~~~~~~~~~~-~~~vLDl~cG~G~~~-------------l~la~-------------------~~~~V~gvd~~~~ai  248 (369)
T 3bt7_A          202 MLEWALDVTKGS-KGDLLELYCGNGNFS-------------LALAR-------------------NFDRVLATEIAKPSV  248 (369)
T ss_dssp             HHHHHHHHTTTC-CSEEEEESCTTSHHH-------------HHHGG-------------------GSSEEEEECCCHHHH
T ss_pred             HHHHHHHHhhcC-CCEEEEccCCCCHHH-------------HHHHh-------------------cCCEEEEEECCHHHH
Confidence            345555655543 568999999999998             43333                   345799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCC--------------CceeEEee
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IES--------------DSYSAYTI  174 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~--------------~~~D~V~~  174 (241)
                      +.+++++.                         ..++.  +++++.+|+.+..  ...              .+||+|++
T Consensus       249 ~~a~~n~~-------------------------~ng~~--~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~  301 (369)
T 3bt7_A          249 AAAQYNIA-------------------------ANHID--NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV  301 (369)
T ss_dssp             HHHHHHHH-------------------------HTTCC--SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE
T ss_pred             HHHHHHHH-------------------------HcCCC--ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE
Confidence            99999988                         55554  6888988876541  111              37999986


Q ss_pred             eehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEec
Q psy1420         175 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       175 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      .---      ..+..++.+.|+|+|+++.++..+    +++..+. + ||++.+...+.
T Consensus       302 dPPr------~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~-~-~y~~~~~~~~D  352 (369)
T 3bt7_A          302 DPPR------SGLDSETEKMVQAYPRILYISCNPETLCKNLETLS-Q-THKVERLALFD  352 (369)
T ss_dssp             CCCT------TCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-H-HEEEEEEEEEC
T ss_pred             CcCc------cccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh-h-CcEEEEEEeec
Confidence            3211      123445667778999998888777    4444443 2 68887777664

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.71  E-value=1.2e-07  Score=86.71  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=99.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC--------CCc-----chhhh----
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ--------WKP-----YQYLV----   93 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~----   93 (241)
                      +...++....+.++..++|.+||+|.++             +..+....+...+.        |..     |+-+.    
T Consensus       182 LAaall~l~~~~~~~~llDp~CGSGt~l-------------IEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~  248 (384)
T 3ldg_A          182 MAAAIILLSNWFPDKPFVDPTCGSGTFC-------------IEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEAD  248 (384)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHH-------------HHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCcCCHHH-------------HHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHH
Confidence            3455677778888999999999999987             44332111100000        000     00000    


Q ss_pred             ----cccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCce
Q psy1420          94 ----ESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSY  169 (241)
Q Consensus        94 ----~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  169 (241)
                          ......++|+|+++.+++.+++++.                         ..++. +.+++.+.|+...+.+ ++|
T Consensus       249 ~~~~~~~~~~v~GvDid~~al~~Ar~Na~-------------------------~~gl~-~~I~~~~~D~~~l~~~-~~f  301 (384)
T 3ldg_A          249 EQADYDIQLDISGFDFDGRMVEIARKNAR-------------------------EVGLE-DVVKLKQMRLQDFKTN-KIN  301 (384)
T ss_dssp             HHCCTTCCCCEEEEESCHHHHHHHHHHHH-------------------------HTTCT-TTEEEEECCGGGCCCC-CCS
T ss_pred             HhhhccCCceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChHHCCcc-CCc
Confidence                0012569999999999999999998                         66765 4699999999988754 589


Q ss_pred             eEEeee--ehhhc--cccHHHHHHHHHHhccC--CcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         170 SAYTIA--FGIRN--VTRIDKALSEAYRVLKP--GGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       170 D~V~~~--~~l~~--~~~~~~~l~~~~~~Lkp--gG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |+|+++  ++.+.  ..+...+...+.+.||+  ||.+++.+...+    +.+..|.+..+...+
T Consensus       302 D~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~----l~~~~g~~~~~~~~l  362 (384)
T 3ldg_A          302 GVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTD----FEQKFGRKADKKRKL  362 (384)
T ss_dssp             CEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT----HHHHHTSCCSEEEEE
T ss_pred             CEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH----HHHHhCCCccceeEE
Confidence            999998  54442  23445666666667766  999888776443    233446665555444

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.70  E-value=4.4e-08  Score=89.14  Aligned_cols=125  Identities=14%  Similarity=0.120  Sum_probs=87.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+.+.+...++.+|||+|||+|.++             ..++..++                ....++|+|+++.+
T Consensus        26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~-------------~~~~~~~~----------------~~~~i~gvDi~~~~   76 (421)
T 2ih2_A           26 EVVDFMVSLAEAPRGGRVLEPACAHGPFL-------------RAFREAHG----------------TAYRFVGVEIDPKA   76 (421)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHH-------------HHHHHHHC----------------SCSEEEEEESCTTT
T ss_pred             HHHHHHHHhhccCCCCEEEECCCCChHHH-------------HHHHHHhC----------------CCCeEEEEECCHHH
Confidence            34566777776656679999999999987             33332100                24579999999987


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh---c------
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR---N------  180 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~---~------  180 (241)
                      ++.+    .                                ++.+.++|+...+. .++||+|+++--..   .      
T Consensus        77 ~~~a----~--------------------------------~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~  119 (421)
T 2ih2_A           77 LDLP----P--------------------------------WAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASKYPI  119 (421)
T ss_dssp             CCCC----T--------------------------------TEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSB
T ss_pred             HHhC----C--------------------------------CCcEEeCChhhcCc-cCCCCEEEECcCccCccccccccc
Confidence            7554    1                                46788888877643 46899999852111   0      


Q ss_pred             -ccc-------------------HHHHHHHHHHhccCCcEEEEEecCH-------HHHHHHHHHCCC
Q psy1420         181 -VTR-------------------IDKALSEAYRVLKPGGRFLCLEFSH-------EEFKSMIESAGF  220 (241)
Q Consensus       181 -~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~Gf  220 (241)
                       ..+                   ...+++.+.++|+|||+++++....       +.+++.+.+.|+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          120 HVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             CCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             ccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence             111                   1266899999999999988875432       788898888887

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.69  E-value=1.2e-07  Score=84.24  Aligned_cols=133  Identities=12%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+.+.++.+|||+|||+|..+             ..++..++                ....++++|+++.+++.++
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt-------------~~la~~~~----------------~~g~V~a~D~~~~~l~~~~  144 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKT-------------SHLAALLK----------------NQGKIFAFDLDAKRLASMA  144 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHHT----------------TCSEEEEEESCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHHHH
Confidence            334556788999999999999988             44444211                2468999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC---CceeEEeee-----eh-hhccc---
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES---DSYSAYTIA-----FG-IRNVT---  182 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~-----~~-l~~~~---  182 (241)
                      +++.                         +.++.  ++.++..|+..++...   .+||.|++.     .+ ++..+   
T Consensus       145 ~n~~-------------------------r~g~~--~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~  197 (309)
T 2b9e_A          145 TLLA-------------------------RAGVS--CCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEP  197 (309)
T ss_dssp             HHHH-------------------------HTTCC--SEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC-----------
T ss_pred             HHHH-------------------------HcCCC--eEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChh
Confidence            9998                         55654  6889999988764321   479999962     22 22111   


Q ss_pred             --------cH-------HHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-C-CceEE
Q psy1420         183 --------RI-------DKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-G-FQYVT  224 (241)
Q Consensus       183 --------~~-------~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-G-f~~~~  224 (241)
                              +.       .++|+.+.++++ ||+|+.++.+.      +.+..++++. + |+.+.
T Consensus       198 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~~  261 (309)
T 2b9e_A          198 GAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAP  261 (309)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEECC
T ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCCCcEEEec
Confidence                    11       246777777776 99988765443      4556666655 3 65543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.63  E-value=1.6e-07  Score=85.74  Aligned_cols=154  Identities=12%  Similarity=0.098  Sum_probs=96.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc--------CCCcc-----hhhh----
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG--------QWKPY-----QYLV----   93 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~----   93 (241)
                      ....++....+.++.+|||++||+|.++             ..++....+...+        .|..+     +-+.    
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~l-------------ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~  249 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTIL-------------IEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAF  249 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHH-------------HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHH-------------HHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHH
Confidence            3456667778888999999999999987             4333211100000        00000     0000    


Q ss_pred             ----cccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCce
Q psy1420          94 ----ESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSY  169 (241)
Q Consensus        94 ----~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  169 (241)
                          ......++|+|+++.+++.++.++.                         ..++. +.+++.+.|+.+++.+ ++|
T Consensus       250 ~~~~~~~~~~V~GvDid~~ai~~Ar~Na~-------------------------~~gl~-~~i~~~~~D~~~l~~~-~~~  302 (385)
T 3ldu_A          250 NKIDNESKFKIYGYDIDEESIDIARENAE-------------------------IAGVD-EYIEFNVGDATQFKSE-DEF  302 (385)
T ss_dssp             HHSCCSCCCCEEEEESCHHHHHHHHHHHH-------------------------HHTCG-GGEEEEECCGGGCCCS-CBS
T ss_pred             HHhhccCCceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChhhcCcC-CCC
Confidence                0022579999999999999999988                         55654 4689999999988654 589


Q ss_pred             eEEeeeehh--hc--cccHHHHHHHHHHhccC--CcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         170 SAYTIAFGI--RN--VTRIDKALSEAYRVLKP--GGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       170 D~V~~~~~l--~~--~~~~~~~l~~~~~~Lkp--gG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      |+|+++--.  +.  ..+...+.+.+.+.||+  |+.+++.+...+    +.+..|.+..+...+
T Consensus       303 D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~----l~~~~g~~~~~~~~l  363 (385)
T 3ldu_A          303 GFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYED----FEYEFGQKADKKRKL  363 (385)
T ss_dssp             CEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTT----HHHHHTSCCSEEEEE
T ss_pred             cEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHH----HHHhhCCCcccceEE
Confidence            999996432  21  23445666666667776  888888765432    233445554444444

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.63  E-value=3.5e-07  Score=84.51  Aligned_cols=123  Identities=13%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ..++.+|||+|||+|.++             ..++.                   ...+++++|+++.+++.+++++.  
T Consensus       288 ~~~~~~VLDlgcG~G~~s-------------l~la~-------------------~~~~V~gvD~s~~ai~~A~~n~~--  333 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFG-------------IYLAK-------------------RGFNVKGFDSNEFAIEMARRNVE--  333 (425)
T ss_dssp             HCCSSEEEEETCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH--
T ss_pred             cCCCCEEEEeeccchHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHHHH--
Confidence            356779999999999998             44443                   34579999999999999999887  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                             ..++.   +++..+|+.+...  .+||+|++.-.-...  ...+++.+. .|+|+|.
T Consensus       334 -----------------------~ngl~---v~~~~~d~~~~~~--~~fD~Vv~dPPr~g~--~~~~~~~l~-~l~p~gi  382 (425)
T 2jjq_A          334 -----------------------INNVD---AEFEVASDREVSV--KGFDTVIVDPPRAGL--HPRLVKRLN-REKPGVI  382 (425)
T ss_dssp             -----------------------HHTCC---EEEEECCTTTCCC--TTCSEEEECCCTTCS--CHHHHHHHH-HHCCSEE
T ss_pred             -----------------------HcCCc---EEEEECChHHcCc--cCCCEEEEcCCccch--HHHHHHHHH-hcCCCcE
Confidence                                   44443   7899999888642  279999975332111  124555554 5899999


Q ss_pred             EEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420         201 FLCLEFSHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       201 l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++++. .+..+..-+....|++.+...+.
T Consensus       383 vyvsc-~p~tlarDl~~l~y~l~~~~~~D  410 (425)
T 2jjq_A          383 VYVSC-NPETFARDVKMLDYRIDEIVALD  410 (425)
T ss_dssp             EEEES-CHHHHHHHHHHSSCCEEEEEEEC
T ss_pred             EEEEC-ChHHHHhHHhhCeEEEEEEEEEC
Confidence            88854 44333322222227777766553

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.63  E-value=8.4e-08  Score=84.71  Aligned_cols=89  Identities=10%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT-------------~~La~-------------------~~~~V~aVEid~~l   84 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILT-------------EELAK-------------------NAKKVYVIEIDKSL   84 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEEESCGGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHH-------------HHHHh-------------------cCCEEEEEECCHHH
Confidence            45677778888888999999999999998             44444                   35679999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR  179 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~  179 (241)
                      ++.+++++.                         .  .  ++++++++|+...+++..+||+|+++...+
T Consensus        85 i~~a~~~~~-------------------------~--~--~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           85 EPYANKLKE-------------------------L--Y--NNIEIIWGDALKVDLNKLDFNKVVANLPYQ  125 (295)
T ss_dssp             HHHHHHHHH-------------------------H--C--SSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred             HHHHHHHhc-------------------------c--C--CCeEEEECchhhCCcccCCccEEEEeCccc
Confidence            999998875                         1  1  368999999999887777899999875544

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.61  E-value=2.9e-07  Score=83.86  Aligned_cols=133  Identities=10%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhh-hcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYL-VESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ..+|+|+|||+|.++             ..++..+.+.+.....   -. .+.+..+++..|+..+.-....+.+...  
T Consensus        53 ~~~IaDlGCssG~Nt-------------~~~v~~ii~~i~~~~~---~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~--  114 (374)
T 3b5i_A           53 PFTAVDLGCSSGANT-------------VHIIDFIVKHISKRFD---AAGIDPPEFTAFFSDLPSNDFNTLFQLLPPL--  114 (374)
T ss_dssp             CEEEEEETCCSSHHH-------------HHHHHHHHHHHHHHHH---HTTCCCCCEEEEEEECTTSCHHHHHHHSCCB--
T ss_pred             ceEEEecCCCCChhH-------------HHHHHHHHHHHHHHHh---hcCCCCCceeEEecCCCccchHHHHhhhhhh--
Confidence            578999999999999             2222222111111100   00 0014567888898888777766665411  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--------------------
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--------------------  182 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--------------------  182 (241)
                       ....       ..+....  ..+..+.-+.-+.+.+..-.++++++|+|+++.++||+.                    
T Consensus       115 -~~~~-------~~~~~~~--~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~  184 (374)
T 3b5i_A          115 -VSNT-------CMEECLA--ADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVF  184 (374)
T ss_dssp             -CCCC---------CCC-----CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSS
T ss_pred             -hhhc-------chhhhcc--ccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceE
Confidence             0000       0000000  000010112334455555557789999999999999976                    


Q ss_pred             ------------------cHHHHHHHHHHhccCCcEEEEE
Q psy1420         183 ------------------RIDKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       183 ------------------~~~~~l~~~~~~LkpgG~l~i~  204 (241)
                                        |...+|+..++.|+|||++++.
T Consensus       185 ~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~  224 (374)
T 3b5i_A          185 IHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV  224 (374)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence                              3345688899999999999875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.54  E-value=8.4e-07  Score=86.86  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=99.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc---------CCC-----cchhhhc--
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG---------QWK-----PYQYLVE--   94 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~--   94 (241)
                      +...++....+.++..++|.+||+|.++             +..+....+...+         .|.     .|+-+.+  
T Consensus       178 LAa~ll~~~~~~~~~~llDP~CGSGt~l-------------IeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea  244 (703)
T 3v97_A          178 LAAAIVMRSGWQPGTPLLDPMCGSGTLL-------------IEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEA  244 (703)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHH-------------HHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCeEEecCCCCcHHH-------------HHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHH
Confidence            3466777778888899999999999987             4333211000000         000     0000000  


Q ss_pred             ---------ccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420          95 ---------SIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE  165 (241)
Q Consensus        95 ---------~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (241)
                               .....++|+|+++.+++.|+.++.                         ..++. +.+.+.+.|+.++..+
T Consensus       245 ~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~-------------------------~agv~-~~i~~~~~D~~~~~~~  298 (703)
T 3v97_A          245 QTRARKGLAEYSSHFYGSDSDARVIQRARTNAR-------------------------LAGIG-ELITFEVKDVAQLTNP  298 (703)
T ss_dssp             HHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHH-------------------------HTTCG-GGEEEEECCGGGCCCS
T ss_pred             HHHhhhccccCCccEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChhhCccc
Confidence                     123579999999999999999998                         66766 4689999999887432


Q ss_pred             --CCceeEEeee--ehhhcc-----ccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420         166 --SDSYSAYTIA--FGIRNV-----TRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       166 --~~~~D~V~~~--~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                        .+++|+|+++  ++.+.-     ...-+.+.+..+.+.|||.+++.+...+    +.+..|.+..+...+.
T Consensus       299 ~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~~----l~~~~glk~~k~~~l~  367 (703)
T 3v97_A          299 LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASPD----LLSCLQLRADKQYKAK  367 (703)
T ss_dssp             CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCHH----HHHTTCCCEEEEEEEE
T ss_pred             cccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCCHH----HHHHhCCCcccceeee
Confidence              3389999998  544422     2223445555666678999998875442    3457788876666664

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.50  E-value=4.8e-07  Score=78.09  Aligned_cols=85  Identities=9%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++.+
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~~La~-------------------~~~~V~avEid~~~   63 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALT-------------DYLLT-------------------ECDNLALVEIDRDL   63 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTH-------------HHHTT-------------------TSSEEEEEECCHHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHH-------------HHHHH-------------------hCCEEEEEECCHHH
Confidence            35566777888888999999999999999             55544                   34689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC----CCceeEEeeee
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE----SDSYSAYTIAF  176 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~D~V~~~~  176 (241)
                      ++.+++++.                         .    .++++++++|+...+++    .+++| |+++.
T Consensus        64 ~~~~~~~~~-------------------------~----~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~Nl  104 (255)
T 3tqs_A           64 VAFLQKKYN-------------------------Q----QKNITIYQNDALQFDFSSVKTDKPLR-VVGNL  104 (255)
T ss_dssp             HHHHHHHHT-------------------------T----CTTEEEEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred             HHHHHHHHh-------------------------h----CCCcEEEEcchHhCCHHHhccCCCeE-EEecC
Confidence            999998876                         2    14789999999988754    24688 55544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.48  E-value=5e-07  Score=85.95  Aligned_cols=155  Identities=14%  Similarity=0.044  Sum_probs=95.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhh-----hcccCCCceeecC
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYL-----VESIRQFPNQIDI  105 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~  105 (241)
                      ..+.+.+.+.+.++.+|+|.+||+|.+.             ..+...    +.........+     .......++|+|+
T Consensus       157 iv~~mv~~l~p~~~~~VlDPaCGSG~fL-------------i~a~~~----l~~~~~~~~~~~~~~~~~~~~~~i~GiEi  219 (541)
T 2ar0_A          157 LIKTIIHLLKPQPREVVQDPAAGTAGFL-------------IEADRY----VKSQTNDLDDLDGDTQDFQIHRAFIGLEL  219 (541)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHH-------------HHHHHH----HHTTTTTTTTSCHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHHHhccCCCCeEecCCcccchHH-------------HHHHHH----HHHhhcccccCCHHHHhhhhcceEEEEcC
Confidence            3456677777788889999999999977             333331    11110000000     0001347999999


Q ss_pred             ChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCC-CCCCceeEEeeeehhhcc
Q psy1420         106 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELP-IESDSYSAYTIAFGIRNV  181 (241)
Q Consensus       106 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~  181 (241)
                      ++.+++.|+.++.                         ..++..   .+..+.++|....+ ....+||+|+++-.+...
T Consensus       220 d~~~~~lA~~nl~-------------------------l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          220 VPGTRRLALMNCL-------------------------LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             CHHHHHHHHHHHH-------------------------TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTC
T ss_pred             CHHHHHHHHHHHH-------------------------HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccc
Confidence            9999999998876                         222220   12567788866543 234689999987433211


Q ss_pred             --------------ccHHHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEe
Q psy1420         182 --------------TRIDKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       182 --------------~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                                    .....++..+.+.|||||++.++....        +.+++.|.+.+ .+..+..+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~-~l~~ii~L  342 (541)
T 2ar0_A          275 AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-HLHTILRL  342 (541)
T ss_dssp             SSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE-EEEEEEEC
T ss_pred             cchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC-CEEEEEEc
Confidence                          112478999999999999988765322        45766666654 34444444

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.44  E-value=5e-07  Score=78.77  Aligned_cols=88  Identities=14%  Similarity=0.088  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..+.+.+.+.++..++ +|||+|||+|..+             ..++.                   ...+++++|+++.
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt-------------~~L~~-------------------~~~~V~avEid~~   79 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALT-------------RALLE-------------------AGAEVTAIEKDLR   79 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHH-------------HHHHH-------------------TTCCEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHH-------------HHHHH-------------------cCCEEEEEECCHH
Confidence            3456777788888888 9999999999999             55555                   3468999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhh
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIR  179 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~  179 (241)
                      +++.+++++.                         .     .+++++++|+...+++. ..+|.|+++.-.+
T Consensus        80 ~~~~l~~~~~-------------------------~-----~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           80 LRPVLEETLS-------------------------G-----LPVRLVFQDALLYPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             GHHHHHHHTT-------------------------T-----SSEEEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred             HHHHHHHhcC-------------------------C-----CCEEEEECChhhCChhhccCccEEEecCccc
Confidence            9999988765                         1     36899999999887653 2678888776544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.39  E-value=7.5e-07  Score=86.09  Aligned_cols=141  Identities=15%  Similarity=0.112  Sum_probs=89.2

Q ss_pred             cchHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      .+..+++|+.=.-+|+...+++...+    .+...+.-...++.+|+|+|||+|-++             ...+.... .
T Consensus       320 ~s~tYevFEkD~vKy~~Ye~AI~~Al----~d~~~~~~~~~~~~vVldVGaGrGpLv-------------~~al~A~a-~  381 (637)
T 4gqb_A          320 ESQTYEVFEKDPIKYSQYQQAIYKCL----LDRVPEEEKDTNVQVLMVLGAGRGPLV-------------NASLRAAK-Q  381 (637)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHH----HHHSCGGGTTTCEEEEEEESCTTSHHH-------------HHHHHHHH-H
T ss_pred             hhhhhhhhcCChhhHHHHHHHHHHHH----HHhhhhccccCCCcEEEEECCCCcHHH-------------HHHHHHHH-h
Confidence            34678888877777877654443221    111111212234557999999999886             22222100 0


Q ss_pred             hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420          82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE  161 (241)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  161 (241)
                        +.          ...+++++|.++. ...+++...                         ..++. ++++++++|+++
T Consensus       382 --~~----------~~vkVyAVEknp~-A~~a~~~v~-------------------------~N~~~-dkVtVI~gd~ee  422 (637)
T 4gqb_A          382 --AD----------RRIKLYAVEKNPN-AVVTLENWQ-------------------------FEEWG-SQVTVVSSDMRE  422 (637)
T ss_dssp             --TT----------CEEEEEEEESCHH-HHHHHHHHH-------------------------HHTTG-GGEEEEESCTTT
T ss_pred             --cC----------CCcEEEEEECCHH-HHHHHHHHH-------------------------hccCC-CeEEEEeCccee
Confidence              00          2236899999975 445555555                         55665 689999999999


Q ss_pred             CCCCCCceeEEeeee----hhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         162 LPIESDSYSAYTIAF----GIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       162 ~~~~~~~~D~V~~~~----~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                      ...+ +++|+|++=+    .++  +.....+....|.|||||.++
T Consensus       423 v~LP-EKVDIIVSEwMG~fLl~--E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          423 WVAP-EKADIIVSELLGSFADN--ELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCS-SCEEEEECCCCBTTBGG--GCHHHHHHHHGGGEEEEEEEE
T ss_pred             ccCC-cccCEEEEEcCcccccc--cCCHHHHHHHHHhcCCCcEEc
Confidence            8765 6899999632    222  223357777889999999976

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.36  E-value=7.9e-07  Score=76.88  Aligned_cols=73  Identities=16%  Similarity=0.298  Sum_probs=52.4

Q ss_pred             CeeEEecccCC-CCCCC----CceeEEeee-ehhhcccc--HHHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCc
Q psy1420         151 RLRFLEANAEE-LPIES----DSYSAYTIA-FGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQ  221 (241)
Q Consensus       151 ~~~~~~~d~~~-~~~~~----~~~D~V~~~-~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~  221 (241)
                      ++++..+|+.+ ++...    ..||+|+.- +.-...++  ...+++.+.++|+|||+|+.  ++. ..++..|+++||.
T Consensus       151 ~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysaa~~vrr~L~~aGF~  228 (257)
T 2qy6_A          151 TLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTSAGFVRRGLQEAGFT  228 (257)
T ss_dssp             EEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCCBHHHHHHHHHHTEE
T ss_pred             EEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeCCHHHHHHHHHCCCE
Confidence            57888999776 34222    279999974 33222233  25799999999999999874  333 6789999999999


Q ss_pred             eEEE
Q psy1420         222 YVTY  225 (241)
Q Consensus       222 ~~~~  225 (241)
                      +.+.
T Consensus       229 v~~~  232 (257)
T 2qy6_A          229 MQKR  232 (257)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            7654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.35  E-value=1.5e-06  Score=78.66  Aligned_cols=124  Identities=9%  Similarity=0.022  Sum_probs=77.2

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhh--cccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLV--ESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      ...+|+|+||++|.++             ..++..+=+.+....   +-+-  +.+..+++..|+..+.-..+.+.+...
T Consensus        51 ~~~~IaDlGCs~G~Nt-------------~~~v~~ii~~i~~~~---~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~  114 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNA-------------LFAVTELIKTVEELR---KKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE  114 (359)
T ss_dssp             SEECCEEESCCSSTTT-------------TTGGGTTHHHHHHHH---HSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS
T ss_pred             CceEEEecCCCCCcch-------------HHHHHHHHHHHHHHH---HhcCCCCCCceEEEecCCCchHHHHHHHhcchh
Confidence            3468999999999999             322221111111100   0000  124568899999998888887766511


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH----------------
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI----------------  184 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~----------------  184 (241)
                      +                   . .+   .+.-+.-+.+.+..-.++++++|+|+++.++||..+.                
T Consensus       115 ~-------------------~-~~---~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~  171 (359)
T 1m6e_X          115 N-------------------D-VD---GVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANT  171 (359)
T ss_dssp             C-------------------S-CT---TCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSS
T ss_pred             c-------------------c-cC---CCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCC
Confidence            0                   0 00   1011223445555556788999999999999986542                


Q ss_pred             -----------------HHHHHHHHHhccCCcEEEEEe
Q psy1420         185 -----------------DKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       185 -----------------~~~l~~~~~~LkpgG~l~i~~  205 (241)
                                       ..+|+..++.|+|||++++..
T Consensus       172 ~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          172 CPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence                             234888899999999998864

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.35  E-value=5.6e-06  Score=78.73  Aligned_cols=145  Identities=12%  Similarity=0.061  Sum_probs=96.3

Q ss_pred             HHHHHhhcC----CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          32 KDIFIDRLG----PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        32 ~~~~~~~l~----~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      .+.|.+.+.    +.++.+|+|.+||+|.+.             ..+..    .+..          .....++|+|+++
T Consensus       206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fL-------------i~a~~----~l~~----------~~~~~i~G~Eid~  258 (542)
T 3lkd_A          206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLL-------------LNAKR----YSRQ----------PQTVVYFGQELNT  258 (542)
T ss_dssp             HHHHHHHHHTTCTTCTTCEEEETTCTTSTTG-------------GGHHH----HCSC----------TTTCEEEEEESCH
T ss_pred             HHHHHHHHhcccCCCCCCEEeecccchhHHH-------------HHHHH----HHHh----------ccCceEEEEECcH
Confidence            344444443    457789999999999987             44433    2211          1356799999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--C-CCCCceeEEeeeehh--hc--
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--P-IESDSYSAYTIAFGI--RN--  180 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~~~~~D~V~~~~~l--~~--  180 (241)
                      .+...|+.++.                         -.++..++..+.++|....  | ....+||+|+++--.  .+  
T Consensus       259 ~~~~lA~~Nl~-------------------------l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~  313 (542)
T 3lkd_A          259 STYNLARMNMI-------------------------LHGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSA  313 (542)
T ss_dssp             HHHHHHHHHHH-------------------------HTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCC
T ss_pred             HHHHHHHHHHH-------------------------HcCCCcCccceEecceecccccccccccccEEEecCCcCCcccc
Confidence            99999998876                         3344322467788887765  3 345689999986211  11  


Q ss_pred             ---------------cc---c-HHHHHHHHHHhcc-CCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEec
Q psy1420         181 ---------------VT---R-IDKALSEAYRVLK-PGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       181 ---------------~~---~-~~~~l~~~~~~Lk-pgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                                     ++   + --.++..+.+.|+ |||++.++....        ..+++.+.+.+. +..+..+.
T Consensus       314 ~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~-l~~II~LP  389 (542)
T 3lkd_A          314 SSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGA-IDTVIGLP  389 (542)
T ss_dssp             CGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             chhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCc-eeEEEEcc
Confidence                           00   0 1248899999999 999988766443        668888887754 44455553

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.34  E-value=2.8e-06  Score=80.87  Aligned_cols=157  Identities=10%  Similarity=0.015  Sum_probs=95.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.|.+.+.+.++ +|+|.+||+|.+.             ..+...+.+......  +.=........++|+|+++.+
T Consensus       232 ~Vv~lmv~ll~p~~~-~VlDPaCGSG~fL-------------i~a~~~l~~~~~~~~--~~~~~~~~~~~i~G~Eid~~~  295 (544)
T 3khk_A          232 SIVTLIVEMLEPYKG-RVYDPAMGSGGFF-------------VSSDKFIEKHANVKH--YNASEQKKQISVYGQESNPTT  295 (544)
T ss_dssp             HHHHHHHHHHCCCSE-EEEESSCTTCHHH-------------HHHHHHHHHHHHHHT--SCHHHHGGGEEEEECCCCHHH
T ss_pred             HHHHHHHHHHhcCCC-eEeCcccCcCcHH-------------HHHHHHHHHhccccc--cchHHHhhhceEEEEeCCHHH
Confidence            345667777776665 9999999999876             332221110000000  000000013579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeee--ehhhc------
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIA--FGIRN------  180 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~--~~l~~------  180 (241)
                      .+.|+.++.                         ..++. .++.+.++|....+ ....+||+|+++  ++...      
T Consensus       296 ~~lA~~Nl~-------------------------l~gi~-~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~  349 (544)
T 3khk_A          296 WKLAAMNMV-------------------------IRGID-FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKL  349 (544)
T ss_dssp             HHHHHHHHH-------------------------HTTCC-CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGG
T ss_pred             HHHHHHHHH-------------------------HhCCC-cccceeccchhcCcccccccccEEEECCCcCCccccchhh
Confidence            999998876                         33333 22334666655443 345689999986  32211      


Q ss_pred             -----------------cc----cHHHHHHHHHHhccCCcEEEEEecCH---------HHHHHHHHHCCCceEEEEEec
Q psy1420         181 -----------------VT----RIDKALSEAYRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       181 -----------------~~----~~~~~l~~~~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                                       .+    ..-.++..+.+.|+|||++.++....         ..+++.+.+.+. +..+..+.
T Consensus       350 ~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~-l~aII~LP  427 (544)
T 3khk_A          350 ADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL-VECMVALP  427 (544)
T ss_dssp             TTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC-EEEEEECC
T ss_pred             hhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc-HhEEEECC
Confidence                             11    01268899999999999988775332         678888888765 45555554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.29  E-value=9.4e-07  Score=80.93  Aligned_cols=105  Identities=11%  Similarity=0.043  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||++||+|..+             ..++.    ..  .          ...+++++|+++.+++.+++++.   
T Consensus        51 ~~g~~VLDlfaGtG~~s-------------l~aa~----~~--~----------ga~~V~avDi~~~av~~~~~N~~---   98 (392)
T 3axs_A           51 GRPVKVADPLSASGIRA-------------IRFLL----ET--S----------CVEKAYANDISSKAIEIMKENFK---   98 (392)
T ss_dssp             CSCEEEEESSCTTSHHH-------------HHHHH----HC--S----------CEEEEEEECSCHHHHHHHHHHHH---
T ss_pred             CCCCEEEECCCcccHHH-------------HHHHH----hC--C----------CCCEEEEEECCHHHHHHHHHHHH---
Confidence            46789999999999988             43333    00  0          12579999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCC-eeEEecccCCCC--CCCCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPR-LRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg  198 (241)
                                            ..++. ++ ++++++|+...-  ...++||+|++.-    ...+..++..+.+.|+||
T Consensus        99 ----------------------~Ngl~-~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP----~g~~~~~l~~a~~~Lk~g  151 (392)
T 3axs_A           99 ----------------------LNNIP-EDRYEIHGMEANFFLRKEWGFGFDYVDLDP----FGTPVPFIESVALSMKRG  151 (392)
T ss_dssp             ----------------------HTTCC-GGGEEEECSCHHHHHHSCCSSCEEEEEECC----SSCCHHHHHHHHHHEEEE
T ss_pred             ----------------------HhCCC-CceEEEEeCCHHHHHHHhhCCCCcEEEECC----CcCHHHHHHHHHHHhCCC
Confidence                                  66665 34 889999976531  1245799999754    123356888999999999


Q ss_pred             cEEEEEe
Q psy1420         199 GRFLCLE  205 (241)
Q Consensus       199 G~l~i~~  205 (241)
                      |++++..
T Consensus       152 Gll~~t~  158 (392)
T 3axs_A          152 GILSLTA  158 (392)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEe
Confidence            9887754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.24  E-value=2.5e-06  Score=74.61  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=57.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhccc-CCCceeecCChH
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESI-RQFPNQIDIPNP  108 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~s~~  108 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.    ...            . ..+++++|+++.
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~~La~----~~~------------~~~~~V~avDid~~   79 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALT-------------GPVIA----RLA------------TPGSPLHAVELDRD   79 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTH-------------HHHHH----HHC------------BTTBCEEEEECCHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHH-------------HHHHH----hCC------------CcCCeEEEEECCHH
Confidence            35567777778888899999999999999             44444    100            1 234999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE  165 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  165 (241)
                      +++.++++..                               ++++++++|+...+++
T Consensus        80 ~l~~a~~~~~-------------------------------~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           80 LIGRLEQRFG-------------------------------ELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHHHG-------------------------------GGEEEEESCGGGCCGG
T ss_pred             HHHHHHHhcC-------------------------------CCcEEEECChhcCChh
Confidence            9999987632                               3688999999988754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.23  E-value=1.1e-06  Score=85.63  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=85.6

Q ss_pred             chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL   81 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (241)
                      +..+++|++=.-+|+...+++...+        .+... ..++..|||+|||+|-++             ...+.... .
T Consensus       376 s~tYe~fekD~vRy~~Y~~AI~~al--------~d~~~~~~~~~VVldVGaGtGpLs-------------~~al~A~~-~  433 (745)
T 3ua3_A          376 SGVYNTFEQDQIKYDVYGEAVVGAL--------KDLGADGRKTVVIYLLGGGRGPIG-------------TKILKSER-E  433 (745)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH--------HHHHTTCCSEEEEEEESCTTCHHH-------------HHHHHHHH-H
T ss_pred             hHHHHHHcCChhhHHHHHHHHHHHH--------HHhhcccCCCcEEEEECCCCCHHH-------------HHHHHHHH-H
Confidence            3566677666666666544443221        11111 123557999999999986             22222100 0


Q ss_pred             hh-----cCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEe
Q psy1420          82 IA-----GQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE  156 (241)
Q Consensus        82 ~~-----~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (241)
                      ..     +..        ....+++++|.++.+...++....                          .++. ++++++.
T Consensus       434 a~~~~~~~~~--------~~~~kVyAVEknp~A~~~l~~~~~--------------------------Ng~~-d~VtVI~  478 (745)
T 3ua3_A          434 YNNTFRQGQE--------SLKVKLYIVEKNPNAIVTLKYMNV--------------------------RTWK-RRVTIIE  478 (745)
T ss_dssp             HHHHHSTTSC--------CCEEEEEEEECCHHHHHHHHHHHH--------------------------HTTT-TCSEEEE
T ss_pred             hCcccccccc--------ccccEEEEEeCChHHHHHHHHHHh--------------------------cCCC-CeEEEEe
Confidence            00     000        012489999999977655544432                          3444 5799999


Q ss_pred             cccCCCCCC-----CCceeEEeeeehhhcc---ccHHHHHHHHHHhccCCcEEE
Q psy1420         157 ANAEELPIE-----SDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       157 ~d~~~~~~~-----~~~~D~V~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~  202 (241)
                      +++++...+     .+++|+|++=+. ..+   +-....|..+.+.|||||.++
T Consensus       479 gd~eev~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          479 SDMRSLPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             SCGGGHHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             CchhhcccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence            999988653     578999997432 222   123467788889999999876

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.20  E-value=9.9e-07  Score=78.00  Aligned_cols=89  Identities=16%  Similarity=0.228  Sum_probs=67.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.    ..             +...++++|.++.+++
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s-------------~~la~----~~-------------~~~~VigvD~d~~al~   64 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHS-------------RAILE----HC-------------PGCRIIGIDVDSEVLR   64 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHH-------------HHHHH----HC-------------TTCEEEEEESCHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHH
Confidence            455667777788899999999999998             44444    10             1468999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CC---CCceeEEeeeehh
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IE---SDSYSAYTIAFGI  178 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~---~~~~D~V~~~~~l  178 (241)
                      .+++++.                         ..+   .+++++++|+..++  ..   ..+||.|++..+.
T Consensus        65 ~A~~~~~-------------------------~~g---~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~gv  108 (301)
T 1m6y_A           65 IAEEKLK-------------------------EFS---DRVSLFKVSYREADFLLKTLGIEKVDGILMDLGV  108 (301)
T ss_dssp             HHHHHTG-------------------------GGT---TTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred             HHHHHHH-------------------------hcC---CcEEEEECCHHHHHHHHHhcCCCCCCEEEEcCcc
Confidence            9999887                         433   36899999988764  11   1579999976543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.19  E-value=1e-06  Score=80.29  Aligned_cols=116  Identities=12%  Similarity=-0.055  Sum_probs=74.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..++.    .             .....++++|+++.+++.+++++..+..
T Consensus        47 ~~~~VLDl~aGtG~~~-------------l~~a~----~-------------~~~~~V~avDi~~~av~~a~~N~~~n~~   96 (378)
T 2dul_A           47 NPKIVLDALSATGIRG-------------IRFAL----E-------------TPAEEVWLNDISEDAYELMKRNVMLNFD   96 (378)
T ss_dssp             CCSEEEESSCTTSHHH-------------HHHHH----H-------------SSCSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEECCCchhHHH-------------HHHHH----h-------------CCCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence            5779999999999988             44443    0             0234699999999999999999882100


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                      .          ............++.  +++++++|+..... ..++||+|+..-    ......++..+.+.|||||.+
T Consensus        97 ~----------~~~~~~~~~~~~gl~--~i~v~~~Da~~~~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l  160 (378)
T 2dul_A           97 G----------ELRESKGRAILKGEK--TIVINHDDANRLMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGIL  160 (378)
T ss_dssp             S----------CCEECSSEEEEESSS--EEEEEESCHHHHHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEE
T ss_pred             c----------ccccccccccccCCC--ceEEEcCcHHHHHHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEE
Confidence            0          000000000000433  37888898766421 135799998532    123467889999999999988


Q ss_pred             EEE
Q psy1420         202 LCL  204 (241)
Q Consensus       202 ~i~  204 (241)
                      ++.
T Consensus       161 ~vt  163 (378)
T 2dul_A          161 GVT  163 (378)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.15  E-value=2.7e-06  Score=74.12  Aligned_cols=63  Identities=11%  Similarity=0.097  Sum_probs=41.0

Q ss_pred             EEecccCCCCCCCCceeEEeeeehhh----ccccH--HHHHHHHHHhccCC-cEEEEEecC--HHHHHHHHH
Q psy1420         154 FLEANAEELPIESDSYSAYTIAFGIR----NVTRI--DKALSEAYRVLKPG-GRFLCLEFS--HEEFKSMIE  216 (241)
Q Consensus       154 ~~~~d~~~~~~~~~~~D~V~~~~~l~----~~~~~--~~~l~~~~~~Lkpg-G~l~i~~~~--~~~~~~~l~  216 (241)
                      .+..+++...+..+++|+|+|....+    .....  ...|+.+.++|+|| |.|++-.|.  .++..++++
T Consensus       126 ~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~  197 (277)
T 3evf_A          126 TFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLE  197 (277)
T ss_dssp             EEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHH
T ss_pred             EEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHH
Confidence            34444444445567899999976554    22221  13478889999999 999998888  444444443

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.10  E-value=2.9e-06  Score=73.02  Aligned_cols=85  Identities=11%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCC--ceeecCCh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQF--PNQIDIPN  107 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~s~  107 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             . + .                   ....  ++++|+++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~-l-~-------------------~~~~~~v~avEid~   53 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALT-------------E-P-V-------------------GERLDQLTVIELDR   53 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTH-------------H-H-H-------------------HTTCSCEEEECCCH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHH-------------H-h-h-------------------hCCCCeEEEEECCH
Confidence            34566777777788889999999999999             4 2 2                   1234  99999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-----CceeEEeeeeh
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-----DSYSAYTIAFG  177 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~V~~~~~  177 (241)
                      .+++.++++..                         ..    ++++++++|+...++++     +..|.|+++..
T Consensus        54 ~~~~~a~~~~~-------------------------~~----~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           54 DLAARLQTHPF-------------------------LG----PKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLP   99 (252)
T ss_dssp             HHHHHHHTCTT-------------------------TG----GGEEEECSCGGGCCHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHhc-------------------------cC----CceEEEECchhhCCHHHhhcccCCceEEEECCC
Confidence            99999987664                         11    36899999998876532     12456666543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.08  E-value=1.4e-05  Score=68.45  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..+.+.+.+.+...++.+|||+|||+|..+             ..++.                  ....+++++|+++.
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt-------------~~L~~------------------~~~~~v~avEid~~   65 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLT-------------KVLLQ------------------HPLKKLYVIELDRE   65 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHH-------------HHHTT------------------SCCSEEEEECCCHH
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHH-------------HHHHH------------------cCCCeEEEEECCHH
Confidence            345677778888888899999999999988             44444                  12368999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES  166 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  166 (241)
                      +++.++++ .                              ..+++++++|+...++++
T Consensus        66 ~~~~~~~~-~------------------------------~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           66 MVENLKSI-G------------------------------DERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHTTS-C------------------------------CTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHhc-c------------------------------CCCeEEEEcchhhCChhH
Confidence            99988754 2                              136899999999887653

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.06  E-value=1.1e-06  Score=75.86  Aligned_cols=85  Identities=15%  Similarity=0.127  Sum_probs=60.2

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh-------H
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN-------P  108 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-------~  108 (241)
                      .+.+...++.+|||+|||+|..+             ..++.                   ...+++++|+++       .
T Consensus        76 ~~a~~~~~~~~VLDlgcG~G~~a-------------~~lA~-------------------~g~~V~~vD~s~~~~~ll~~  123 (258)
T 2r6z_A           76 AKAVNHTAHPTVWDATAGLGRDS-------------FVLAS-------------------LGLTVTAFEQHPAVACLLSD  123 (258)
T ss_dssp             HHHTTGGGCCCEEETTCTTCHHH-------------HHHHH-------------------TTCCEEEEECCHHHHHHHHH
T ss_pred             HHHhCcCCcCeEEEeeCccCHHH-------------HHHHH-------------------hCCEEEEEECChhhhHHHHH
Confidence            33344456779999999999988             43333                   346899999999       8


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCC--CceeEEeeeehh
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IES--DSYSAYTIAFGI  178 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~--~~~D~V~~~~~l  178 (241)
                      +++.+++++.                         ..++. .+++++++|+.+. + .+.  ++||+|++.-.+
T Consensus       124 ~l~~a~~n~~-------------------------~~~~~-~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          124 GIRRALLNPE-------------------------TQDTA-ARINLHFGNAAEQMPALVKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHHHHSHH-------------------------HHHHH-TTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHHhHHH-------------------------hhCCc-cCeEEEECCHHHHHHhhhccCCCccEEEECCCC
Confidence            8888887665                         33332 3588999998764 2 333  679999986443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.03  E-value=4.9e-05  Score=66.92  Aligned_cols=144  Identities=15%  Similarity=0.172  Sum_probs=92.0

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||-+|.|.|..+             +.++.        .         ....+++.+|+++..++.+++.+..+  
T Consensus        83 ~pk~VLIiGgGdG~~~-------------revlk--------~---------~~v~~v~~VEID~~Vv~~a~~~lp~~--  130 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAML-------------REVTR--------H---------KNVESITMVEIDAGVVSFCRQYLPNH--  130 (294)
T ss_dssp             CCCEEEEESCTTSHHH-------------HHHHT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CCCeEEEECCCchHHH-------------HHHHH--------c---------CCcceEEEEcCCHHHHHHHHhcCccc--
Confidence            3459999999999988             55544        1         13568999999999999998765310  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc----cHHHHHHHHHHhccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~----~~~~~l~~~~~~Lkp  197 (241)
                                          .......++++++.+|+... ....++||+|+.-..=...+    --..+++.+++.|+|
T Consensus       131 --------------------~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p  190 (294)
T 3o4f_A          131 --------------------NAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNP  190 (294)
T ss_dssp             --------------------HTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEE
T ss_pred             --------------------cccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCC
Confidence                                00112236899999997764 33467899998643211000    124789999999999


Q ss_pred             CcEEEEEecCH----HHHH---HHHHHCCCceEEEEEec-----CceeEEEeee
Q psy1420         198 GGRFLCLEFSH----EEFK---SMIESAGFQYVTYENLT-----FGVVAIHSGF  239 (241)
Q Consensus       198 gG~l~i~~~~~----~~~~---~~l~~~Gf~~~~~~~~~-----~~~~~~~~~~  239 (241)
                      ||+++...-+.    +.+.   +.+++. |..+......     .|..+...|.
T Consensus       191 ~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v~~~~~~vPty~~g~w~f~~as  243 (294)
T 3o4f_A          191 GGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDVGFYQAAIPTYYGGIMTFAWAT  243 (294)
T ss_dssp             EEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEEEEEEECCTTSSSSCEEEEEEE
T ss_pred             CCEEEEecCCcccChHHHHHHHHHHHhh-CCceeeeeeeeccCCCcceeheeEE
Confidence            99998754222    3333   334444 7666665443     2555554443

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.97  E-value=7.5e-06  Score=74.70  Aligned_cols=73  Identities=18%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             ecccCCCCCCCCceeEEeeeehhhccccHH---------------------------------------HHHHHHHHhcc
Q psy1420         156 EANAEELPIESDSYSAYTIAFGIRNVTRID---------------------------------------KALSEAYRVLK  196 (241)
Q Consensus       156 ~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~---------------------------------------~~l~~~~~~Lk  196 (241)
                      .+.+..-.++++++|+|+++.++||+.+..                                       .+|+..++.|+
T Consensus       137 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~  216 (384)
T 2efj_A          137 PGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELI  216 (384)
T ss_dssp             CSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             chhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334444557789999999999999965432                                       12666689999


Q ss_pred             CCcEEEEEec-------C-----H-------------------------------HHHHHHHHHCC-CceEEEEEe
Q psy1420         197 PGGRFLCLEF-------S-----H-------------------------------EEFKSMIESAG-FQYVTYENL  228 (241)
Q Consensus       197 pgG~l~i~~~-------~-----~-------------------------------~~~~~~l~~~G-f~~~~~~~~  228 (241)
                      |||++++...       .     .                               ++++.+++++| |.+..++..
T Consensus       217 pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~  292 (384)
T 2efj_A          217 SRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETF  292 (384)
T ss_dssp             EEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred             cCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence            9999998632       1     1                               78888898875 788777654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.94  E-value=2.7e-06  Score=78.31  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..+..                   ...+++++|+++.+++.++.++.    
T Consensus        93 ~g~~VLDLgcG~G~~a-------------l~LA~-------------------~g~~V~~VD~s~~~l~~Ar~N~~----  136 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDF-------------IALMS-------------------KASQGIYIERNDETAVAARHNIP----  136 (410)
T ss_dssp             TTCEEEESSCSSSHHH-------------HHHHT-------------------TCSEEEEEESCHHHHHHHHHHHH----
T ss_pred             CCCEEEEeCCCchHHH-------------HHHHh-------------------cCCEEEEEECCHHHHHHHHHhHH----
Confidence            4789999999999987             33333                   35689999999999999999987    


Q ss_pred             ccccccccceecceeeeeecccc--CCCCCCeeEEecccCCC-CC-CCCceeEEeee
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKI--DIPNPRLRFLEANAEEL-PI-ESDSYSAYTIA  175 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~-~~-~~~~~D~V~~~  175 (241)
                                           ..  ++  .+++++++|+... +. +..+||+|++.
T Consensus       137 ---------------------~~~~gl--~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A          137 ---------------------LLLNEG--KDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             ---------------------HHSCTT--CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             ---------------------HhccCC--CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence                                 44  44  3689999998874 32 23579999984

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.92  E-value=6.2e-05  Score=68.28  Aligned_cols=112  Identities=11%  Similarity=0.140  Sum_probs=77.8

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      .++|.++||+||++|.++             ..++.                   ....++++|+.+-. ...   ..  
T Consensus       209 l~~G~~vlDLGAaPGGWT-------------~~l~~-------------------rg~~V~aVD~~~l~-~~l---~~--  250 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWT-------------YQLVK-------------------RNMWVYSVDNGPMA-QSL---MD--  250 (375)
T ss_dssp             SCTTCEEEEETCTTCHHH-------------HHHHH-------------------TTCEEEEECSSCCC-HHH---HT--
T ss_pred             CCCCCEEEEeCcCCCHHH-------------HHHHH-------------------CCCEEEEEEhhhcC-hhh---cc--
Confidence            368999999999999999             44443                   45689999986532 111   11  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCC--
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG--  198 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg--  198 (241)
                                                  .+++++++.|+.....+..++|+|+|-.    ...+...+..+.+.+..+  
T Consensus       251 ----------------------------~~~V~~~~~d~~~~~~~~~~~D~vvsDm----~~~p~~~~~l~~~wl~~~~~  298 (375)
T 4auk_A          251 ----------------------------TGQVTWLREDGFKFRPTRSNISWMVCDM----VEKPAKVAALMAQWLVNGWC  298 (375)
T ss_dssp             ----------------------------TTCEEEECSCTTTCCCCSSCEEEEEECC----SSCHHHHHHHHHHHHHTTSC
T ss_pred             ----------------------------CCCeEEEeCccccccCCCCCcCEEEEcC----CCChHHhHHHHHHHHhcccc
Confidence                                        1478999999888776667899999844    345666777777766655  


Q ss_pred             -cEEEEEecCH-----------HHHHHHHHHCCCce
Q psy1420         199 -GRFLCLEFSH-----------EEFKSMIESAGFQY  222 (241)
Q Consensus       199 -G~l~i~~~~~-----------~~~~~~l~~~Gf~~  222 (241)
                       +.++......           ..+.+.++..||..
T Consensus       299 ~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          299 RETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA  334 (375)
T ss_dssp             SEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             ceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcch
Confidence             4444443322           66777888999864

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.88  E-value=6.1e-05  Score=62.84  Aligned_cols=77  Identities=6%  Similarity=-0.056  Sum_probs=57.0

Q ss_pred             CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCC--CCCCeeEEecccCCC------------
Q psy1420          97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI--PNPRLRFLEANAEEL------------  162 (241)
Q Consensus        97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~------------  162 (241)
                      ..+++.+|.++...+.+++++.                         +.++  . .+++++.+|+.+.            
T Consensus        51 ~g~VvtvE~d~~~~~~ar~~l~-------------------------~~g~~~~-~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           51 GKHVTSVESDRAWARMMKAWLA-------------------------ANPPAEG-TEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHH-------------------------HSCCCTT-CEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHH-------------------------HcCCCCC-CceEEEEeCchhhhcccccccchhh
Confidence            4689999999999999999988                         6665  3 5788888886432            


Q ss_pred             ---C--------C-CCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420         163 ---P--------I-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       163 ---~--------~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~  204 (241)
                         +        . ..++||+|++-....     ...+..+.+.|+|||++++-
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-----~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR-----VGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSSSH-----HHHHHHHHHHCSSCEEEEET
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCCCc-----hhHHHHHHHhcCCCeEEEEe
Confidence               1        1 136899999765322     35566677999999999663

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.84  E-value=0.0001  Score=64.50  Aligned_cols=85  Identities=13%  Similarity=0.212  Sum_probs=59.9

Q ss_pred             ccCCCCCCeeEEecccCC-CC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHH
Q psy1420         144 KIDIPNPRLRFLEANAEE-LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIE  216 (241)
Q Consensus       144 ~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~  216 (241)
                      +.++..++++++.+++.+ +| .+.++||+|+.-...  -......|+.+.+.|+|||++++-+...     +.+.+..+
T Consensus       183 ~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~  260 (282)
T 2wk1_A          183 NYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRA  260 (282)
T ss_dssp             HTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHH
T ss_pred             HcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            666633689999999865 33 334689999876532  2334578999999999999999866542     67788888


Q ss_pred             HCCCceEEEEEecCc
Q psy1420         217 SAGFQYVTYENLTFG  231 (241)
Q Consensus       217 ~~Gf~~~~~~~~~~~  231 (241)
                      +.|... .+..+.++
T Consensus       261 ~~~i~~-~i~~~~~~  274 (282)
T 2wk1_A          261 KFDIAD-ELITIDRD  274 (282)
T ss_dssp             HTTCCS-CCEECSSS
T ss_pred             hcCCce-EEEEecCE
Confidence            888764 34444433

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.83  E-value=1.2e-05  Score=70.17  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=35.7

Q ss_pred             CCCCceeEEeeeehhh----ccccH--HHHHHHHHHhccCC--cEEEEEecC--HHHHHHHHH
Q psy1420         164 IESDSYSAYTIAFGIR----NVTRI--DKALSEAYRVLKPG--GRFLCLEFS--HEEFKSMIE  216 (241)
Q Consensus       164 ~~~~~~D~V~~~~~l~----~~~~~--~~~l~~~~~~Lkpg--G~l~i~~~~--~~~~~~~l~  216 (241)
                      ++..++|+|+|.....    .....  ..+|+-+.++|+||  |.|++-.|.  .++..++++
T Consensus       152 l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~  214 (282)
T 3gcz_A          152 MEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELS  214 (282)
T ss_dssp             SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHH
T ss_pred             cCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHH
Confidence            3457899999876554    12211  23577778999999  999998888  544444443

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.80  E-value=0.00023  Score=67.41  Aligned_cols=156  Identities=16%  Similarity=0.103  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      +...+.|.+.+.+.++.+|+|.+||+|.+.             .....    .+.................++|.|+++.
T Consensus       203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL-------------~~a~~----~l~~~~~~~~~~~~~~~~~i~G~E~~~~  265 (530)
T 3ufb_A          203 RPVVRFMVEVMDPQLGESVLDPACGTGGFL-------------VEAFE----HLERQCKTVEDREVLQESSIFGGEAKSL  265 (530)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHH-------------HHHHH----HHHTTCCSHHHHHHHHTCCEEEECCSHH
T ss_pred             HHHHHHHHHhhccCCCCEEEeCCCCcchHH-------------HHHHH----HHHHhccchhHHHHHhhhhhhhhhccHH
Confidence            345677888888888999999999999876             33333    2211110000000012357999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeehhh--c--
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFGIR--N--  180 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~l~--~--  180 (241)
                      +...++.++.                         -.++.  ...+..+|....|.    ...+||+|+++--+.  .  
T Consensus       266 ~~~la~mNl~-------------------------lhg~~--~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~  318 (530)
T 3ufb_A          266 PYLLVQMNLL-------------------------LHGLE--YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEK  318 (530)
T ss_dssp             HHHHHHHHHH-------------------------HHTCS--CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCH
T ss_pred             HHHHHHHHHH-------------------------hcCCc--cccccccccccCchhhhcccccceEEEecCCCCccccc
Confidence            9999887765                         22332  22345566554332    234799999873331  1  


Q ss_pred             -----cc-------cHHHHHHHHHHhcc-------CCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEec
Q psy1420         181 -----VT-------RIDKALSEAYRVLK-------PGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       181 -----~~-------~~~~~l~~~~~~Lk-------pgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                           .+       .-..++..+.+.||       |||++.++....        ..+++.|-+. +.+..+..+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~-~~l~aII~LP  393 (530)
T 3ufb_A          319 GILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN-FNLHTIVRLP  393 (530)
T ss_dssp             HHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH-SEEEEEEECC
T ss_pred             cccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc-CEEEEEEECC
Confidence                 00       11356777778886       799988875432        4577777666 3455566654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.71  E-value=1.2e-05  Score=88.15  Aligned_cols=130  Identities=15%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      ++..+|||+|.|+|..+             ..++..++    ..+.        ....++.+|+|+...+.+++++.   
T Consensus      1239 ~~~~~ilEigagtg~~t-------------~~il~~l~----~~~~--------~~~~yt~td~s~~~~~~a~~~f~--- 1290 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLY-------------SRIPALLN----TQPV--------MDLDYTATDRNPQALEAAQAKLE--- 1290 (2512)
T ss_dssp             SSEEEEEEESCSSSCCT-------------TTHHHHTT----TSSS--------CEEEEEEECSSSSSTTTTTTTHH---
T ss_pred             CCCceEEEECCCccHHH-------------HHHHHhhc----ccCc--------ccceEEEecCChHHHHHHHHHhh---
Confidence            46789999999999988             55555222    1110        13468889999877766665544   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                            ..     .+.....|.... ++....||+|+++.++|..++....|++++++|||||+
T Consensus      1291 ----------------------~~-----di~~~~~d~~~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~ 1343 (2512)
T 2vz8_A         1291 ----------------------QL-----HVTQGQWDPANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGF 1343 (2512)
T ss_dssp             ----------------------HH-----TEEEECCCSSCCCC-----CCEEEEECC--------------------CCE
T ss_pred             ----------------------hc-----ccccccccccccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcE
Confidence                                  10     011211232221 22345799999999999888999999999999999999


Q ss_pred             EEEEecCH------------------------HHHHHHHHHCCCceEEEE
Q psy1420         201 FLCLEFSH------------------------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       201 l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~  226 (241)
                      +++.+...                        ++|.+.|+++||..+...
T Consensus      1344 l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A         1344 LLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALK 1393 (2512)
T ss_dssp             EEEEEC--------------------------CTTTTSSTTTTEEEEEEE
T ss_pred             EEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCceeeec
Confidence            98865221                        345556677888776654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.69  E-value=0.00012  Score=66.27  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+++++|.+|||+.+|+|.=+             .+++.    +.             ....+++.|+++..++.+.
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT-------------~~la~----~~-------------~~~~l~A~D~~~~R~~~l~  189 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKT-------------LALLQ----TG-------------CCRNLAANDLSPSRIARLQ  189 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHH-------------HHHHH----TT-------------CEEEEEEECSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecCCccHHH-------------HHHHH----hc-------------CCCcEEEEcCCHHHHHHHH
Confidence            344567899999999999999877             44443    11             2346999999999999998


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCC----CCCeeEEecccCCCC-CCCCceeEEee----ee---hhh-cc
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP----NPRLRFLEANAEELP-IESDSYSAYTI----AF---GIR-NV  181 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~~D~V~~----~~---~l~-~~  181 (241)
                      +++.                         +.+..    ..++.+...|....+ ...+.||.|++    +.   +.. .-
T Consensus       190 ~~l~-------------------------r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~  244 (359)
T 4fzv_A          190 KILH-------------------------SYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEE  244 (359)
T ss_dssp             HHHH-------------------------HHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCT
T ss_pred             HHHH-------------------------HhhhhhhccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccC
Confidence            8877                         22221    135777788877653 33568999994    33   111 00


Q ss_pred             c------c----------HHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         182 T------R----------IDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       182 ~------~----------~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      +      .          -.++|..+.+.|||||+|+-++-+.
T Consensus       245 ~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          245 NNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             TCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            0      0          1367888999999999998876554

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.67  E-value=2.3e-05  Score=67.76  Aligned_cols=98  Identities=10%  Similarity=0.063  Sum_probs=61.6

Q ss_pred             HHHHHhhcCCCCC--CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          32 KDIFIDRLGPTHD--TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        32 ~~~~~~~l~~~~~--~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+..+++  .+|||++||+|..+             ..++.                   ...+++++|.++.+
T Consensus        75 ~e~l~~al~l~~g~~~~VLDl~~G~G~da-------------l~lA~-------------------~g~~V~~vE~~~~~  122 (258)
T 2oyr_A           75 GEAVAKAVGIKGDYLPDVVDATAGLGRDA-------------FVLAS-------------------VGCRVRMLERNPVV  122 (258)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCTTCHHH-------------HHHHH-------------------HTCCEEEEECCHHH
T ss_pred             HHHHHHHhcccCCCCCEEEEcCCcCCHHH-------------HHHHH-------------------cCCEEEEEECCHHH
Confidence            3555666666666  89999999999988             43333                   35579999999987


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccC-CCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN  180 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~  180 (241)
                      .+.++..+....                  .+....+ +. .+++++++|..+. +...++||+|++.-...+
T Consensus       123 ~~l~~~~l~~a~------------------~~~~~~~~l~-~~i~~~~~D~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          123 AALLDDGLARGY------------------ADAEIGGWLQ-ERLQLIHASSLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HHHHHHHHHHHH------------------HCTTTHHHHH-HHEEEEESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHHHHHHHHH------------------hhHhhhhhhh-cCEEEEECCHHHHHHhCcccCCEEEEcCCCCC
Confidence            666655443000                  0000001 11 2588999997763 322347999998765544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.50  E-value=0.00052  Score=67.89  Aligned_cols=136  Identities=13%  Similarity=-0.000  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH--HHHHhc
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL--EANAEE  119 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~--~~~~~~  119 (241)
                      .++.+|||.|||+|.+.             ..++.    .+...          ....++|+|+++.+++.|  +.++..
T Consensus       320 ~~g~rVLDPaCGSG~FL-------------IaaA~----~l~ei----------~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLL-------------ATVSA----GFNNV----------MPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CTTCEEEETTCTTSHHH-------------HHHHH----TSTTC----------CGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             CCCCEEEECCCCccHHH-------------HHHHH----Hhccc----------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            46789999999999987             33333    11100          135789999999999998  444330


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhh--c-cc-------------
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIR--N-VT-------------  182 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~--~-~~-------------  182 (241)
                      .                     ....++.  ...+...|+... +....+||+|+++--..  . ..             
T Consensus       373 N---------------------~LlhGi~--~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g  429 (878)
T 3s1s_A          373 P---------------------QLVSSNN--APTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQL  429 (878)
T ss_dssp             T---------------------TTCBTTB--CCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHH
T ss_pred             h---------------------hhhcCCC--cceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhh
Confidence            0                     0001111  123444555442 22346799999863221  0 00             


Q ss_pred             -------------cHHHHHHHHHHhccCCcEEEEEecCH---------HHHHHHHHHCCCceEEEEEe
Q psy1420         183 -------------RIDKALSEAYRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       183 -------------~~~~~l~~~~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                                   -...++..+.+.|+|||++.++....         +.+++.+.+. +.+..+..+
T Consensus       430 ~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~-~~I~aIIdL  496 (878)
T 3s1s_A          430 TGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGN-FGLEHIFLY  496 (878)
T ss_dssp             HSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTT-TCEEEEEEC
T ss_pred             ccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhC-CCeEEEEEC
Confidence                         12356788999999999998876443         5566666555 333444444

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.49  E-value=0.00013  Score=63.75  Aligned_cols=85  Identities=13%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+.+++++.++|++||.|..+             ..++.                   ....++|+|.++.++
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS-------------~~il~-------------------~~g~VigiD~Dp~Ai   57 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHA-------------RGILE-------------------RGGRVIGLDQDPEAV   57 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHH-------------HHHHH-------------------CCCEEEEEeCCHHHH
Confidence            4566777888889999999999999999             55554                   246899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeehh
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFGI  178 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~l  178 (241)
                      +.+++ +.                         .     +++.++++++.+++     ...+++|.|++..+.
T Consensus        58 ~~A~~-L~-------------------------~-----~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~DLGv   99 (285)
T 1wg8_A           58 ARAKG-LH-------------------------L-----PGLTVVQGNFRHLKRHLAALGVERVDGILADLGV   99 (285)
T ss_dssp             HHHHH-TC-------------------------C-----TTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred             HHHHh-hc-------------------------c-----CCEEEEECCcchHHHHHHHcCCCCcCEEEeCCcc
Confidence            99987 65                         2     26778888877653     112468888865443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.46  E-value=0.00048  Score=59.39  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             eEEec-ccCCCCCCCCceeEEeeeehhh----cccc--HHHHHHHHHHhccCCc-EEEEEecCH--HHHHHHH
Q psy1420         153 RFLEA-NAEELPIESDSYSAYTIAFGIR----NVTR--IDKALSEAYRVLKPGG-RFLCLEFSH--EEFKSMI  215 (241)
Q Consensus       153 ~~~~~-d~~~~~~~~~~~D~V~~~~~l~----~~~~--~~~~l~~~~~~LkpgG-~l~i~~~~~--~~~~~~l  215 (241)
                      .+..+ |+.+++  ..++|+|+|-..-.    .+..  ...+|+-+.++|+||| .|++-.|..  +++.+.+
T Consensus       125 ~~~~G~Df~~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l  195 (269)
T 2px2_A          125 TMKSGVDVFYKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKL  195 (269)
T ss_dssp             EEECSCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred             EeeccCCccCCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHH
Confidence            44445 887653  45799999854332    1111  1136777889999999 899888877  5665543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.44  E-value=0.00036  Score=61.70  Aligned_cols=85  Identities=13%  Similarity=0.060  Sum_probs=54.9

Q ss_pred             eeEEecccCC-CC-CCCCceeEEeeee-hhhccccH--HHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCceEEE
Q psy1420         152 LRFLEANAEE-LP-IESDSYSAYTIAF-GIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       152 ~~~~~~d~~~-~~-~~~~~~D~V~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~~~~~  225 (241)
                      +++..+|+.. ++ +...++|+++.-. +-..-+++  ..+++.++++++|||.+.  +++. ..++..|+++||.+.+.
T Consensus       168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYtaag~VRR~L~~aGF~V~k~  245 (308)
T 3vyw_A          168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV--SYSSSLSVRKSLLTLGFKVGSS  245 (308)
T ss_dssp             EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESCCCHHHHHHHHHTTCEEEEE
T ss_pred             EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE--EEeCcHHHHHHHHHCCCEEEec
Confidence            4566777654 22 3344799988532 22222222  589999999999999886  5655 88999999999997766


Q ss_pred             EEecCceeEEEeee
Q psy1420         226 ENLTFGVVAIHSGF  239 (241)
Q Consensus       226 ~~~~~~~~~~~~~~  239 (241)
                      .- .++=-.+.+|.
T Consensus       246 ~G-~g~KReml~A~  258 (308)
T 3vyw_A          246 RE-IGRKRKGTVAS  258 (308)
T ss_dssp             EC-C---CEEEEEE
T ss_pred             CC-CCCCCceeEEe
Confidence            52 23333444443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.30  E-value=0.00035  Score=61.39  Aligned_cols=51  Identities=16%  Similarity=0.120  Sum_probs=34.3

Q ss_pred             CCCceeEEeeeehhh----ccccH--HHHHHHHHHhccCC-cEEEEEecC--HHHHHHHH
Q psy1420         165 ESDSYSAYTIAFGIR----NVTRI--DKALSEAYRVLKPG-GRFLCLEFS--HEEFKSMI  215 (241)
Q Consensus       165 ~~~~~D~V~~~~~l~----~~~~~--~~~l~~~~~~Lkpg-G~l~i~~~~--~~~~~~~l  215 (241)
                      ...++|+|+|...-.    .....  ...|+-+.++|+|| |.|++-.|.  .++..+++
T Consensus       144 ~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll  203 (300)
T 3eld_A          144 PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKL  203 (300)
T ss_dssp             CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHH
T ss_pred             CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHH
Confidence            356899999865544    11111  24577788999999 999999888  54444443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.21  E-value=0.0015  Score=57.43  Aligned_cols=123  Identities=15%  Similarity=0.109  Sum_probs=74.9

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+.+....+++.+|+|+||++|.++             ..++.        ..         ....++++|+...--  
T Consensus        84 ~ei~~~~~l~~~~~VlDLGaapGGws-------------q~~~~--------~~---------gv~~V~avdvG~~~h--  131 (321)
T 3lkz_A           84 RWLVERRFLEPVGKVIDLGCGRGGWC-------------YYMAT--------QK---------RVQEVRGYTKGGPGH--  131 (321)
T ss_dssp             HHHHHTTSCCCCEEEEEETCTTCHHH-------------HHHTT--------CT---------TEEEEEEECCCSTTS--
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCcHH-------------HHHHh--------hc---------CCCEEEEEEcCCCCc--
Confidence            34455556678889999999999999             21221        11         234789999865411  


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccCCCCCCCCceeEEeeeehhhccccH-------
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAEELPIESDSYSAYTIAFGIRNVTRI-------  184 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~V~~~~~l~~~~~~-------  184 (241)
                            ..|....++                  +.+  -+.+... |+..++.  .++|+|+|--+ ..-+++       
T Consensus       132 ------e~P~~~~ql------------------~w~--lV~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rt  182 (321)
T 3lkz_A          132 ------EEPQLVQSY------------------GWN--IVTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRT  182 (321)
T ss_dssp             ------CCCCCCCBT------------------TGG--GEEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHH
T ss_pred             ------cCcchhhhc------------------CCc--ceEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHH
Confidence                  011111111                  111  2556655 6666543  56899998766 333322       


Q ss_pred             HHHHHHHHHhccCC-cEEEEEecCH--HHHHHHHH
Q psy1420         185 DKALSEAYRVLKPG-GRFLCLEFSH--EEFKSMIE  216 (241)
Q Consensus       185 ~~~l~~~~~~Lkpg-G~l~i~~~~~--~~~~~~l~  216 (241)
                      -++|+-+.+.|++| |-++|-.+.+  .++.+.++
T Consensus       183 l~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~  217 (321)
T 3lkz_A          183 IRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME  217 (321)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence            24777778999999 8999888777  55544444

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.12  E-value=0.002  Score=58.58  Aligned_cols=131  Identities=11%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+||-+|.|.|..+             +.++.                  ....+++.+|+++..++.+++....+.
T Consensus       204 ~~pkrVLIIGgGdG~~~-------------revlk------------------h~~~~V~~VEIDp~VVe~ar~yfp~~~  252 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGIL-------------CEIVK------------------LKPKMVTMVEIDQMVIDGCKKYMRKTC  252 (381)
T ss_dssp             CTTCEEEEEECTTCHHH-------------HHHHT------------------TCCSEEEEEESCHHHHHHHHHHCCC--
T ss_pred             CCCCeEEEECCCcHHHH-------------HHHHh------------------cCCceeEEEccCHHHHHHHHhhchhhh
Confidence            34569999999999988             54444                  123579999999999999987654110


Q ss_pred             CccccccccceecceeeeeeccccCC-CCCCeeEEecccCCC----CCCCCceeEEeeeehhhc-ccc---------HHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRN-VTR---------IDK  186 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~-~~~---------~~~  186 (241)
                        ..                  .... ..++++++..|+...    +...++||+|+.-..-.. ..+         ...
T Consensus       253 --~~------------------~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~e  312 (381)
T 3c6k_A          253 --GD------------------VLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRL  312 (381)
T ss_dssp             ----------------------CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHH
T ss_pred             --hh------------------hhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHH
Confidence              00                  0000 013578888886542    122467999986532110 011         246


Q ss_pred             HHHHHHHhccCCcEEEEEe---cCH---HHHHHHHHHCCCceEE
Q psy1420         187 ALSEAYRVLKPGGRFLCLE---FSH---EEFKSMIESAGFQYVT  224 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~---~~~---~~~~~~l~~~Gf~~~~  224 (241)
                      +++.+++.|+|||+++...   +..   ..+.+.+++. |..+.
T Consensus       313 Fy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v-F~~v~  355 (381)
T 3c6k_A          313 ILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCPVE  355 (381)
T ss_dssp             HHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSCEE
T ss_pred             HHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh-CCcce
Confidence            7889999999999998642   222   4455566665 44443

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.91  E-value=0.0094  Score=50.91  Aligned_cols=115  Identities=13%  Similarity=0.137  Sum_probs=71.1

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+.+....+++.+|+|+||++|.++             ..++.        ..         ....++++|+...-.  
T Consensus        68 ~ei~ek~~l~~g~~VvDLGaapGGWS-------------q~~a~--------~~---------g~~~V~avdvG~~gh--  115 (267)
T 3p8z_A           68 QWFVERNMVIPEGRVIDLGCGRGGWS-------------YYCAG--------LK---------KVTEVRGYTKGGPGH--  115 (267)
T ss_dssp             HHHHHTTSSCCCEEEEEESCTTSHHH-------------HHHHT--------ST---------TEEEEEEECCCSTTS--
T ss_pred             HHHHHhcCCCCCCEEEEcCCCCCcHH-------------HHHHH--------hc---------CCCEEEEEecCCCCc--
Confidence            44555556678899999999999999             21221        11         234789999865421  


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccCCCCCCCCceeEEeeeehhhccc------cHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAEELPIESDSYSAYTIAFGIRNVT------RID  185 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~V~~~~~l~~~~------~~~  185 (241)
                            +.|....                  .-+++  .++|... |+..++.  .++|.|+|.-+=..-.      ..-
T Consensus       116 ------e~P~~~~------------------s~gwn--~v~fk~gvDv~~~~~--~~~DtllcDIgeSs~~~~vE~~Rtl  167 (267)
T 3p8z_A          116 ------EEPVPMS------------------TYGWN--IVKLMSGKDVFYLPP--EKCDTLLCDIGESSPSPTVEESRTI  167 (267)
T ss_dssp             ------CCCCCCC------------------CTTTT--SEEEECSCCGGGCCC--CCCSEEEECCCCCCSCHHHHHHHHH
T ss_pred             ------cCcchhh------------------hcCcC--ceEEEeccceeecCC--ccccEEEEecCCCCCChhhhhhHHH
Confidence                  1122111                  22333  5778877 8765543  5699999865442211      112


Q ss_pred             HHHHHHHHhccCCcEEEEEecCH
Q psy1420         186 KALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      ++|+-+.+.|++ |-++|-.+.+
T Consensus       168 rvLela~~wL~~-~~fc~KVl~p  189 (267)
T 3p8z_A          168 RVLKMVEPWLKN-NQFCIKVLNP  189 (267)
T ss_dssp             HHHHHHGGGCSS-CEEEEEESCC
T ss_pred             HHHHHHHHhccc-CCEEEEEccC
Confidence            477777899998 7888876665

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.32  E-value=0.0034  Score=54.66  Aligned_cols=54  Identities=7%  Similarity=0.051  Sum_probs=42.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++... .++..|||++||+|.++             ..+..                   .+..++++|+++.+++
T Consensus       225 ~~~~i~~~~-~~~~~vlD~f~GsGt~~-------------~~a~~-------------------~g~~~~g~e~~~~~~~  271 (297)
T 2zig_A          225 AERLVRMFS-FVGDVVLDPFAGTGTTL-------------IAAAR-------------------WGRRALGVELVPRYAQ  271 (297)
T ss_dssp             HHHHHHHHC-CTTCEEEETTCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHH
T ss_pred             HHHHHHHhC-CCCCEEEECCCCCCHHH-------------HHHHH-------------------cCCeEEEEeCCHHHHH
Confidence            344444444 57889999999999988             44433                   4568999999999999


Q ss_pred             HHHHHHh
Q psy1420         112 FLEANAE  118 (241)
Q Consensus       112 ~~~~~~~  118 (241)
                      .+++++.
T Consensus       272 ~a~~r~~  278 (297)
T 2zig_A          272 LAKERFA  278 (297)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998876

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.14  E-value=0.0053  Score=54.94  Aligned_cols=55  Identities=15%  Similarity=0.066  Sum_probs=44.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+.+++++.++|+.+|.|..+             ..++..++                ....++++|.++.++
T Consensus        45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS-------------~~iL~~lg----------------~~GrVig~D~Dp~Al   95 (347)
T 3tka_A           45 LLDEAVNGLNIRPDGIYIDGTFGRGGHS-------------RLILSQLG----------------EEGRLLAIDRDPQAI   95 (347)
T ss_dssp             TTHHHHHHTCCCTTCEEEESCCTTSHHH-------------HHHHTTCC----------------TTCEEEEEESCHHHH
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHH
Confidence            4577788888899999999999999998             44444221                356899999999999


Q ss_pred             HHHH
Q psy1420         111 RFLE  114 (241)
Q Consensus       111 ~~~~  114 (241)
                      +.++
T Consensus        96 ~~A~   99 (347)
T 3tka_A           96 AVAK   99 (347)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9873

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.41  E-value=0.073  Score=46.86  Aligned_cols=71  Identities=10%  Similarity=0.046  Sum_probs=45.6

Q ss_pred             EEecccCCCCCCCCceeEEeeeehh-----hcccc------HHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420         154 FLEANAEELPIESDSYSAYTIAFGI-----RNVTR------IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG  219 (241)
Q Consensus       154 ~~~~d~~~~~~~~~~~D~V~~~~~l-----~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G  219 (241)
                      ++++|...... .++||+|++-..-     .....      -+.+++-+.+.|+|||.|++-.|..   +.+.++. + -
T Consensus       156 ~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lr-k-~  232 (344)
T 3r24_A          156 TLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM-G-H  232 (344)
T ss_dssp             EEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH-T-T
T ss_pred             EEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHH-h-h
Confidence            47777655432 4789999964221     11111      3577788889999999999987766   3444433 3 6


Q ss_pred             CceEEEEE
Q psy1420         220 FQYVTYEN  227 (241)
Q Consensus       220 f~~~~~~~  227 (241)
                      |..++...
T Consensus       233 F~~VK~fK  240 (344)
T 3r24_A          233 FSWWTAFV  240 (344)
T ss_dssp             EEEEEEEE
T ss_pred             CCeEEEEC
Confidence            87776663

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.96  E-value=0.056  Score=46.81  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=54.4

Q ss_pred             CeeEEecccCC-CC-CCCCceeEEeeeehhhc--------------------cccHHHHHHHHHHhccCCcEEEEEecC-
Q psy1420         151 RLRFLEANAEE-LP-IESDSYSAYTIAFGIRN--------------------VTRIDKALSEAYRVLKPGGRFLCLEFS-  207 (241)
Q Consensus       151 ~~~~~~~d~~~-~~-~~~~~~D~V~~~~~l~~--------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~-  207 (241)
                      +.+++++|..+ ++ +++++||+|+++--...                    .......+.++.++|||||.+++..-. 
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~  100 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV  100 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence            57889999776 22 45678999998632210                    112356788999999999998875321 


Q ss_pred             ---------------HHHHHHHHHHCCCceEEEEEe
Q psy1420         208 ---------------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       208 ---------------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                                     +..+..+++++||......-|
T Consensus       101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW  136 (297)
T 2zig_A          101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIW  136 (297)
T ss_dssp             EEECC----EEEECHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccccccCCcccccccHHHHHHHHHHcCCeeeccEEE
Confidence                           146888999999987765544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=94.71  E-value=0.0084  Score=47.49  Aligned_cols=39  Identities=13%  Similarity=0.026  Sum_probs=28.2

Q ss_pred             CCCCeEEEEecCCCc-chhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          42 THDTKLLDVAGGTDP-LANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .++.+|||+|||.|. ++             ..+.                  +..+..++++|+++..++
T Consensus        34 ~~~~rVlEVG~G~g~~vA-------------~~La------------------~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVS-------------DYIR------------------KHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CSSSEEEEETCTTCCHHH-------------HHHH------------------HHSCCEEEEECSSCSSTT
T ss_pred             CCCCcEEEEccCCChHHH-------------HHHH------------------HhCCCeEEEEECCccccc
Confidence            345799999999995 65             2221                  124567999999998776

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=94.21  E-value=0.16  Score=43.47  Aligned_cols=75  Identities=11%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             CCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-------HHHHHHHH
Q psy1420         150 PRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------EEFKSMIE  216 (241)
Q Consensus       150 ~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------~~~~~~l~  216 (241)
                      ++++++.+++.+. |     .+..++|++..-...  -......++.+...|+|||++++-++..       +.+.+.+.
T Consensus       158 ~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~~  235 (257)
T 3tos_A          158 QRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLG  235 (257)
T ss_dssp             CSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHTC
T ss_pred             CcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHHh
Confidence            6899999998764 2     234579999876542  2344567889999999999999977632       77788888


Q ss_pred             HCCCceEEEE
Q psy1420         217 SAGFQYVTYE  226 (241)
Q Consensus       217 ~~Gf~~~~~~  226 (241)
                      +.|.++...-
T Consensus       236 ~~~~~i~~~p  245 (257)
T 3tos_A          236 LDHAPLRLLP  245 (257)
T ss_dssp             TTSSCCEECT
T ss_pred             hCCCeEEEcc
Confidence            8887755443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.15  E-value=0.13  Score=49.57  Aligned_cols=75  Identities=16%  Similarity=0.263  Sum_probs=50.2

Q ss_pred             CeeEEecccCCC-C-CC---CCceeEEeeeehhhcc-cc--HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCce
Q psy1420         151 RLRFLEANAEEL-P-IE---SDSYSAYTIAFGIRNV-TR--IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQY  222 (241)
Q Consensus       151 ~~~~~~~d~~~~-~-~~---~~~~D~V~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~  222 (241)
                      .+++..+|+.+. + ..   ...+|+++.-..--.- ++  -..++..+.++++|||.+.- -.....++..+.++||.+
T Consensus       149 ~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t-~~~~~~vr~~l~~aGf~~  227 (689)
T 3pvc_A          149 TLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST-FTAAGFVRRGLQQAGFNV  227 (689)
T ss_dssp             EEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE-SCCCHHHHHHHHHTTCEE
T ss_pred             EEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe-ccCcHHHHHHHHhCCeEE
Confidence            477888887542 2 11   3679999863211110 11  15788999999999998753 223378999999999987


Q ss_pred             EEEE
Q psy1420         223 VTYE  226 (241)
Q Consensus       223 ~~~~  226 (241)
                      .+..
T Consensus       228 ~~~~  231 (689)
T 3pvc_A          228 TKVK  231 (689)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            7655

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.12  E-value=0.054  Score=45.99  Aligned_cols=53  Identities=11%  Similarity=0.020  Sum_probs=41.1

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++... .++..|||..||+|.++             .....                   .+..++++|+++..++.
T Consensus       203 ~~~i~~~~-~~~~~vlD~f~GsGtt~-------------~~a~~-------------------~gr~~ig~e~~~~~~~~  249 (260)
T 1g60_A          203 ERIIRASS-NPNDLVLDCFMGSGTTA-------------IVAKK-------------------LGRNFIGCDMNAEYVNQ  249 (260)
T ss_dssp             HHHHHHHC-CTTCEEEESSCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHH
T ss_pred             HHHHHHhC-CCCCEEEECCCCCCHHH-------------HHHHH-------------------cCCeEEEEeCCHHHHHH
Confidence            33444433 67889999999999988             43333                   46789999999999999


Q ss_pred             HHHHHh
Q psy1420         113 LEANAE  118 (241)
Q Consensus       113 ~~~~~~  118 (241)
                      +.+++.
T Consensus       250 ~~~r~~  255 (260)
T 1g60_A          250 ANFVLN  255 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998887

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=93.49  E-value=0.11  Score=46.50  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=40.0

Q ss_pred             HHHHHhhcCCC------CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecC
Q psy1420          32 KDIFIDRLGPT------HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDI  105 (241)
Q Consensus        32 ~~~~~~~l~~~------~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  105 (241)
                      .+.+.+.++..      ++..|||+|.|.|.++             ..++.    ..             ...+++++|+
T Consensus        41 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT-------------~~Ll~----~~-------------~~~~vvavE~   90 (353)
T 1i4w_A           41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQS-------------AIFYN----KY-------------CPRQYSLLEK   90 (353)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHH-------------HHHHH----HH-------------CCSEEEEECC
T ss_pred             HHHHHHhccCCcccCcCCCCEEEEECCCCCHHH-------------HHHHh----hC-------------CCCEEEEEec
Confidence            44555555543      3578999999999999             55554    00             1357999999


Q ss_pred             ChHhHHHHHHHH
Q psy1420         106 PNPRLRFLEANA  117 (241)
Q Consensus       106 s~~~~~~~~~~~  117 (241)
                      ++.++...+...
T Consensus        91 D~~l~~~L~~~~  102 (353)
T 1i4w_A           91 RSSLYKFLNAKF  102 (353)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999998887654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=93.48  E-value=0.21  Score=47.89  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=49.5

Q ss_pred             CeeEEecccCCC-C-CC---CCceeEEeeee-hhhcccc--HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCce
Q psy1420         151 RLRFLEANAEEL-P-IE---SDSYSAYTIAF-GIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQY  222 (241)
Q Consensus       151 ~~~~~~~d~~~~-~-~~---~~~~D~V~~~~-~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~  222 (241)
                      .+++..+|+.+. + ..   ...+|+++.-. .-..-++  -..++..+.++++|||.+.- -.....++..+.++||.+
T Consensus       157 ~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t-~~~~~~vr~~L~~aGf~v  235 (676)
T 3ps9_A          157 TLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT-FTSAGFVRRGLQDAGFTM  235 (676)
T ss_dssp             EEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE-SCCCHHHHHHHHHHTCEE
T ss_pred             EEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe-ccCcHHHHHHHHhCCeEE
Confidence            366777776542 2 11   35799998632 1111122  15789999999999998763 223378999999999987


Q ss_pred             EEEE
Q psy1420         223 VTYE  226 (241)
Q Consensus       223 ~~~~  226 (241)
                      .+..
T Consensus       236 ~~~~  239 (676)
T 3ps9_A          236 QKRK  239 (676)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            7644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.54  E-value=0.29  Score=42.90  Aligned_cols=79  Identities=18%  Similarity=0.102  Sum_probs=53.7

Q ss_pred             CCeeEEecccCC-CC-CCCCceeEEeeeehhh--------------ccccHHHHHHHHHHhccCCcEEEEEecC------
Q psy1420         150 PRLRFLEANAEE-LP-IESDSYSAYTIAFGIR--------------NVTRIDKALSEAYRVLKPGGRFLCLEFS------  207 (241)
Q Consensus       150 ~~~~~~~~d~~~-~~-~~~~~~D~V~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~------  207 (241)
                      .+..++++|..+ ++ ++++++|+|++.--..              +.......+.+++++|+|||.+++..-.      
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~   92 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV   92 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence            356788888654 33 4567899999862221              1224678899999999999999885221      


Q ss_pred             -------HHHHHHHHHHCCCceEEEEEe
Q psy1420         208 -------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       208 -------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                             ...+.++++..||.......|
T Consensus        93 ~~~~~~~~~~i~~~~~~~Gf~~~~~iiW  120 (323)
T 1boo_A           93 PARSIYNFRVLIRMIDEVGFFLAEDFYW  120 (323)
T ss_dssp             EEECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             cccccchHHHHHHHHHhCCCEEEEEEEE
Confidence                   134556678999987765544

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=91.99  E-value=0.84  Score=40.95  Aligned_cols=43  Identities=12%  Similarity=0.134  Sum_probs=31.4

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      .+++|+-||.|..+             ..+..                  .....+.++|+++.+.+..+.+..
T Consensus         3 ~~vidLFsG~GGls-------------lG~~~------------------aG~~~v~avE~d~~a~~t~~~N~~   45 (376)
T 3g7u_A            3 LNVIDLFSGVGGLS-------------LGAAR------------------AGFDVKMAVEIDQHAINTHAINFP   45 (376)
T ss_dssp             CEEEEETCTTSHHH-------------HHHHH------------------HTCEEEEEECSCHHHHHHHHHHCT
T ss_pred             CeEEEEccCcCHHH-------------HHHHH------------------CCCcEEEEEeCCHHHHHHHHHhCC
Confidence            58999999999988             33322                  123347799999999888877653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=90.82  E-value=2.9  Score=36.36  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=67.7

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      ..|+++|||--.-.             .++..                  .....++-+| -|..++..++.+.+..   
T Consensus       104 ~QvV~LGaGlDTra-------------~Rl~~------------------~~~~~v~evD-~P~vi~~k~~lL~~~~---  148 (310)
T 2uyo_A          104 RQFVILASGLDSRA-------------YRLDW------------------PTGTTVYEID-QPKVLAYKSTTLAEHG---  148 (310)
T ss_dssp             CEEEEETCTTCCHH-------------HHSCC------------------CTTCEEEEEE-CHHHHHHHHHHHHHTT---
T ss_pred             CeEEEeCCCCCchh-------------hhccC------------------CCCcEEEEcC-CHHHHHHHHHHHHhcC---
Confidence            47999999987765             33321                  0245788888 4788877777765210   


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---------CCCCceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---------IESDSYSAYTIAFGIRNVTR--IDKALSEAYR  193 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~  193 (241)
                                           ..++++..++.+|+.. .         +..+..-++++-.+++++++  ...+++.+..
T Consensus       149 ---------------------~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~  206 (310)
T 2uyo_A          149 ---------------------VTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGG  206 (310)
T ss_dssp             ---------------------CCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHH
T ss_pred             ---------------------CCCCCCeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHH
Confidence                                 0122467777787765 2         11223345666677777754  4578888888


Q ss_pred             hccCCcEEEEEecC
Q psy1420         194 VLKPGGRFLCLEFS  207 (241)
Q Consensus       194 ~LkpgG~l~i~~~~  207 (241)
                      .+.||+.+++....
T Consensus       207 ~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          207 LSAVGSRIAVETSP  220 (310)
T ss_dssp             TCCTTCEEEEECCC
T ss_pred             hCCCCeEEEEEecC
Confidence            88899888876443

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=90.62  E-value=0.76  Score=40.60  Aligned_cols=126  Identities=9%  Similarity=0.071  Sum_probs=68.2

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+...|+.+|||.....             .++..                 ......++-+|. |..++.-++.+.+.+
T Consensus        96 ~~~~qVV~LGaGlDTr~-------------~RL~~-----------------~~~~~~~~EvD~-P~vi~~K~~~l~~~~  144 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRM-------------LPLLQ-----------------MFPHLAYVDIDY-NESVELKNSILRESE  144 (334)
T ss_dssp             CSSEEEEEETCTTCCTH-------------HHHHH-----------------HCTTEEEEEEEC-HHHHHHHHHHHHHSH
T ss_pred             CCCcEEEEeCCCCccHH-------------HHhcC-----------------cCCCCEEEECCC-HHHHHHHHHHhhhcc
Confidence            45678999999999877             44432                 012446777777 666666555554221


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC---------CCCceeEEeeeehhhcccc--HHHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI---------ESDSYSAYTIAFGIRNVTR--IDKALSE  190 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~~D~V~~~~~l~~~~~--~~~~l~~  190 (241)
                      ...............      ....+.+++..++.+|+.+...         ..+...++++-.++.+++.  ....++.
T Consensus       145 ~l~~~l~~~~~~~~~------~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~  218 (334)
T 1rjd_A          145 ILRISLGLSKEDTAK------SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINT  218 (334)
T ss_dssp             HHHHHHTCCSSCCCC------TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             chhhhcccccccccc------cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHH
Confidence            000000000000000      0000112467788888776321         2245677777777777654  4577787


Q ss_pred             HHHhccCCcEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLE  205 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~  205 (241)
                      +.+.. |+|.+++.+
T Consensus       219 ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          219 IMSKF-SHGLWISYD  232 (334)
T ss_dssp             HHHHC-SSEEEEEEE
T ss_pred             HHhhC-CCcEEEEEe
Confidence            87776 778776554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.30  E-value=0.44  Score=40.24  Aligned_cols=76  Identities=12%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             eEEecccCCC--CCCCCceeEEeeeehh--h------------ccccHHHHHHHHHHhccCCcEEEEEe--cCHHHHHHH
Q psy1420         153 RFLEANAEEL--PIESDSYSAYTIAFGI--R------------NVTRIDKALSEAYRVLKPGGRFLCLE--FSHEEFKSM  214 (241)
Q Consensus       153 ~~~~~d~~~~--~~~~~~~D~V~~~~~l--~------------~~~~~~~~l~~~~~~LkpgG~l~i~~--~~~~~~~~~  214 (241)
                      +++++|....  ..+++++|+|++.--.  .            +..-....++++.++|+|||.+++..  +....+..+
T Consensus         6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~~~~~   85 (260)
T 1g60_A            6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQY   85 (260)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHH
T ss_pred             eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHHHHHHHH
Confidence            4566665331  1335678888865211  1            01234578888999999999988763  112455667


Q ss_pred             HHHCCCceEEEEEe
Q psy1420         215 IESAGFQYVTYENL  228 (241)
Q Consensus       215 l~~~Gf~~~~~~~~  228 (241)
                      +.+.||.......|
T Consensus        86 ~~~~gf~~~~~iiW   99 (260)
T 1g60_A           86 LVSKGMIFQNWITW   99 (260)
T ss_dssp             HHHTTCEEEEEEEE
T ss_pred             HHhhccceeEEEEE
Confidence            88999987765555

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=90.07  E-value=0.42  Score=41.47  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=81.9

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +..+||+=+|+|..+             ...+.                   ...+++.+|.++...+..++++.     
T Consensus        92 ~~~~LDlfaGSGaLg-------------iEaLS-------------------~~d~~vfvE~~~~a~~~L~~Nl~-----  134 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFA-------------INQLR-------------------SQDRLYLCELHPTEYNFLLKLPH-----  134 (283)
T ss_dssp             SSSSCCEEECHHHHH-------------HHHSC-------------------TTSEEEEECCSHHHHHHHTTSCC-----
T ss_pred             CCCceeEeCCcHHHH-------------HHHcC-------------------CCCeEEEEeCCHHHHHHHHHHhC-----
Confidence            457899999999988             55444                   35789999999999999887776     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCC-CC---CCCCceeEEeeeehhhccccHHHHHHHHHH--hccC
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LP---IESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKP  197 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~--~Lkp  197 (241)
                                          .    .+++++++.|... +.   .+..+||+|++-=....-.+..+.++.+.+  .+.|
T Consensus       135 --------------------~----~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~  190 (283)
T 2oo3_A          135 --------------------F----NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFS  190 (283)
T ss_dssp             --------------------T----TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCT
T ss_pred             --------------------c----CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCC
Confidence                                2    1468888888543 21   223579999975444323355666666655  4568


Q ss_pred             CcEEEEEec--CH---HHHHHHHHHCCCceEEEE
Q psy1420         198 GGRFLCLEF--SH---EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       198 gG~l~i~~~--~~---~~~~~~l~~~Gf~~~~~~  226 (241)
                      +|.+++.=.  ..   +.+.+-+++.|..+...+
T Consensus       191 ~Gi~v~WYPi~~~~~~~~~~~~l~~~~~~~l~~e  224 (283)
T 2oo3_A          191 TGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIE  224 (283)
T ss_dssp             TSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             CeEEEEEEeccchHHHHHHHHHHHhcCCCeEEEE
Confidence            999887522  22   566666666676554443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=88.89  E-value=0.76  Score=40.48  Aligned_cols=32  Identities=13%  Similarity=0.066  Sum_probs=24.2

Q ss_pred             ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .+|+|+.+.+-      ...++.+.+.|+|+|++++..
T Consensus       258 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          258 GVNFALESTGS------PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             CEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCcEEEECCCC------HHHHHHHHHHHhcCCEEEEeC
Confidence            69999865432      246788889999999988753

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=88.01  E-value=0.94  Score=39.97  Aligned_cols=46  Identities=13%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      ..+++|+-||.|..+             ..+..      ++.          ....+.++|+++.+++..+.+..
T Consensus         2 ~~~v~dLFaG~Gg~~-------------~g~~~------~G~----------~~~~v~~~E~d~~a~~~~~~N~~   47 (343)
T 1g55_A            2 PLRVLELYSGVGGMH-------------HALRE------SCI----------PAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             CEEEEEETCTTCHHH-------------HHHHH------HTC----------SEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHH-------------HHHHH------CCC----------CceEEEEEeCCHHHHHHHHHhcc
Confidence            358999999999988             33322      000          02358999999999999888765

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.83  E-value=1.1  Score=39.89  Aligned_cols=39  Identities=13%  Similarity=0.085  Sum_probs=28.3

Q ss_pred             CceeEEeeeehhh---------ccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         167 DSYSAYTIAFGIR---------NVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       167 ~~~D~V~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ..+|+|+.+-+-.         +.+++...++.+.++|+++|++++..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            3689998765432         23445567888999999999987653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=87.17  E-value=1  Score=40.17  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             ceeEEeeeehhhcc--------ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         168 SYSAYTIAFGIRNV--------TRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       168 ~~D~V~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .+|+|+.+-+-...        .++...++.+.++|+|+|++++..
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            69999876543211        113356888899999999987643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=86.25  E-value=1.7  Score=37.92  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~  204 (241)
                      ..+|+|+.+.+-      ...++.+.+.|+|+|++++.
T Consensus       234 ~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          234 KGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CCEEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEe
Confidence            469999864432      13577788899999998864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.20  E-value=0.82  Score=39.91  Aligned_cols=95  Identities=9%  Similarity=0.046  Sum_probs=57.4

Q ss_pred             hhcCCCCCCeEEEEecCC-CcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGT-DPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      .....+++.+||-.|+|. |..+             .+++..                  ...++++++.++...+.+++
T Consensus       170 ~~~~~~~g~~VlV~GaG~vG~~a-------------~qla~~------------------~Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          170 KFSKVTKGTKVGVAGFGGLGSMA-------------VKYAVA------------------MGAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             HHTTCCTTCEEEEESCSHHHHHH-------------HHHHHH------------------TTCEEEEECSSSTTHHHHHH
T ss_pred             HhcCCCCCCEEEEECCcHHHHHH-------------HHHHHH------------------CCCeEEEEeCCHHHHHHHHh
Confidence            344678899999998642 2222             333331                  34579999999988887764


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                      .                             +..    .++ .+....   ...+|+|+.+.+-.      ..++.+.+.|
T Consensus       219 l-----------------------------Ga~----~v~-~~~~~~---~~~~D~vid~~g~~------~~~~~~~~~l  255 (348)
T 3two_A          219 M-----------------------------GVK----HFY-TDPKQC---KEELDFIISTIPTH------YDLKDYLKLL  255 (348)
T ss_dssp             T-----------------------------TCS----EEE-SSGGGC---CSCEEEEEECCCSC------CCHHHHHTTE
T ss_pred             c-----------------------------CCC----eec-CCHHHH---hcCCCEEEECCCcH------HHHHHHHHHH
Confidence            2                             111    122 222222   12799998654322      2466677899


Q ss_pred             cCCcEEEEEe
Q psy1420         196 KPGGRFLCLE  205 (241)
Q Consensus       196 kpgG~l~i~~  205 (241)
                      +|+|++++..
T Consensus       256 ~~~G~iv~~G  265 (348)
T 3two_A          256 TYNGDLALVG  265 (348)
T ss_dssp             EEEEEEEECC
T ss_pred             hcCCEEEEEC
Confidence            9999988753

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=85.62  E-value=0.93  Score=40.08  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=24.8

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      +.+|+|+.+.+-      ...++.+.++|++||++++..
T Consensus       252 gg~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          252 GGVDVVIECAGV------AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             TCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEe
Confidence            479999965432      246788889999999998753

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=85.50  E-value=4.4  Score=35.50  Aligned_cols=47  Identities=11%  Similarity=0.059  Sum_probs=32.6

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCc-eeecCChHhHHHHHHHHh
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFP-NQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~s~~~~~~~~~~~~  118 (241)
                      ...+++|+-||.|..+             ..+..      ++-          ....+ .++|+++.+.+..+.+..
T Consensus         9 ~~~~vidLFaG~GG~~-------------~G~~~------aG~----------~~~~v~~a~e~d~~a~~ty~~N~~   56 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLR-------------SSYER------SSI----------NINATFIPFDINEIANKIYSKNFK   56 (327)
T ss_dssp             CCEEEEEETCTTTHHH-------------HHHHH------SSC----------CCCEEEEEECCCHHHHHHHHHHHC
T ss_pred             CCCEEEEECCChhHHH-------------HHHHH------cCC----------CceEEEEEEECCHHHHHHHHHHCC
Confidence            4568999999999987             32222      000          01345 699999999988887765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=85.48  E-value=3  Score=36.36  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=24.9

Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ...+|+|+.+.+-      ...++.+.++|+++|++++..
T Consensus       250 g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          250 GIEPAVALECTGV------ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             SCCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECC
T ss_pred             CCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEc
Confidence            3478999865432      235778889999999998753

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=85.31  E-value=5.6  Score=34.75  Aligned_cols=45  Identities=9%  Similarity=0.055  Sum_probs=33.7

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      .+.+++|+-||.|..+             ..+..                  .....+.++|+++.+.+..+.+..
T Consensus        10 ~~~~~~dLFaG~Gg~~-------------~g~~~------------------aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFR-------------LALES------------------CGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TTCEEEEETCTTTHHH-------------HHHHH------------------TTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCcCHHH-------------HHHHH------------------CCCeEEEEEeCCHHHHHHHHHHcC
Confidence            3568999999999988             33322                  023458899999999999888765

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=83.32  E-value=1.8  Score=37.81  Aligned_cols=77  Identities=14%  Similarity=0.067  Sum_probs=50.1

Q ss_pred             eeEE-ecccCCC--CCCCCceeEEeeeehh--h---------ccccHHHHHHHHHHhccCCcEEEEEecCH---------
Q psy1420         152 LRFL-EANAEEL--PIESDSYSAYTIAFGI--R---------NVTRIDKALSEAYRVLKPGGRFLCLEFSH---------  208 (241)
Q Consensus       152 ~~~~-~~d~~~~--~~~~~~~D~V~~~~~l--~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------  208 (241)
                      ..++ ++|....  .++++++|+|++.--.  .         +.......+.++.++|+|||.+++..-..         
T Consensus        39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~~  118 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGD  118 (319)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCC
T ss_pred             ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccccccccc
Confidence            4566 7886542  2345689999975221  1         12235678889999999999998853221         


Q ss_pred             -HHHHHHHHHCC-CceEEEEEe
Q psy1420         209 -EEFKSMIESAG-FQYVTYENL  228 (241)
Q Consensus       209 -~~~~~~l~~~G-f~~~~~~~~  228 (241)
                       ..+...+...| |......-|
T Consensus       119 l~~l~~~i~~~G~~~~~~~IIW  140 (319)
T 1eg2_A          119 LISIISHMRQNSKMLLANLIIW  140 (319)
T ss_dssp             HHHHHHHHHHHCCCEEEEEEEE
T ss_pred             HHHHHHHHhCcccceeEEEEEE
Confidence             45556667778 887765555

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=83.16  E-value=1.3  Score=40.10  Aligned_cols=50  Identities=14%  Similarity=0.071  Sum_probs=37.6

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      .+++..++|+|++.|..+             ..++.    ....           ...+++++|++|...+.+++++.
T Consensus       224 l~~~~~viDvGAn~G~~s-------------~~~a~----~~~~-----------~~~~V~afEP~p~~~~~L~~n~~  273 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESL-------------AGLIG----VTKG-----------KFERVWMIEPDRINLQTLQNVLR  273 (409)
T ss_dssp             CCSSCEEEEETCTTSHHH-------------HHHHH----HHTS-----------CCSEEEEECCCHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCHHH-------------HHHHH----HhcC-----------CCCEEEEEcCCHHHHHHHHHHHH
Confidence            368889999999999988             33221    0000           23689999999999999999887

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=81.65  E-value=1.9  Score=37.32  Aligned_cols=32  Identities=19%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .+|.|+...+      -...++.+.+.|+|+|++++..
T Consensus       232 ~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          232 GAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SEEEEEESSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeC
Confidence            6888875432      1346788889999999988753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=81.38  E-value=2.9  Score=32.98  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=24.2

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ..+|+++.+.+       ...++.+.+.|+|+|+++...
T Consensus       106 ~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          106 YGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence            36999986543       145778889999999988753

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=81.35  E-value=5.2  Score=36.05  Aligned_cols=57  Identities=5%  Similarity=-0.022  Sum_probs=35.8

Q ss_pred             cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      +.......|+|+|.|+|.++             ..++..    +...+..      ....++..+|+|+...+.-++.+.
T Consensus        76 ~g~p~~~~ivElGaG~GtLa-------------~diL~~----l~~~p~~------~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           76 ADEPQTLRLIEIGPGRGTMM-------------ADALRA----LRVLPIL------YQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             TTCCSSEEEEEECCTTSHHH-------------HHHHHH----HTTSHHH------HTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cCCCCCcEEEEECCCcchHH-------------HHHHHH----HHhCCcc------ccccEEEEEecCHHHHHHHHHHhc
Confidence            34344567999999999988             455442    1111100      023478999999988876555544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=80.71  E-value=1.5  Score=38.46  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ..+|+|+.+.+-       ..+..+.+.|+|+|++++..
T Consensus       256 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          256 RGADHILEIAGG-------AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             CCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEEC
T ss_pred             CCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEe
Confidence            379999976551       24666778999999988763

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=80.45  E-value=1.7  Score=37.24  Aligned_cols=94  Identities=12%  Similarity=0.175  Sum_probs=54.9

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      +....+++.+||-.|+  |...          ....+++..                  .+.++++++ ++...+.+++.
T Consensus       136 ~~~~~~~g~~VlV~Ga--G~vG----------~~a~qlak~------------------~Ga~Vi~~~-~~~~~~~~~~l  184 (315)
T 3goh_A          136 EKIPLTKQREVLIVGF--GAVN----------NLLTQMLNN------------------AGYVVDLVS-ASLSQALAAKR  184 (315)
T ss_dssp             TTSCCCSCCEEEEECC--SHHH----------HHHHHHHHH------------------HTCEEEEEC-SSCCHHHHHHH
T ss_pred             hhcCCCCCCEEEEECC--CHHH----------HHHHHHHHH------------------cCCEEEEEE-ChhhHHHHHHc
Confidence            5566788999999998  3333          011333331                  345799999 88888877653


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK  196 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk  196 (241)
                      -.                                 ..++. |.+.+   ...+|+|+.+.+-.       .+..+.++|+
T Consensus       185 Ga---------------------------------~~v~~-d~~~v---~~g~Dvv~d~~g~~-------~~~~~~~~l~  220 (315)
T 3goh_A          185 GV---------------------------------RHLYR-EPSQV---TQKYFAIFDAVNSQ-------NAAALVPSLK  220 (315)
T ss_dssp             TE---------------------------------EEEES-SGGGC---CSCEEEEECC--------------TTGGGEE
T ss_pred             CC---------------------------------CEEEc-CHHHh---CCCccEEEECCCch-------hHHHHHHHhc
Confidence            21                                 11111 22222   45799998654321       2345678999


Q ss_pred             CCcEEEEEe
Q psy1420         197 PGGRFLCLE  205 (241)
Q Consensus       197 pgG~l~i~~  205 (241)
                      |+|++++..
T Consensus       221 ~~G~~v~~g  229 (315)
T 3goh_A          221 ANGHIICIQ  229 (315)
T ss_dssp             EEEEEEEEC
T ss_pred             CCCEEEEEe
Confidence            999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	2e-06
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	5e-05
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	1e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	2e-04
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	6e-04
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	6e-04
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.003

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1  MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGT 54
          MKL  +E ++ +A++YD+M +   + ++      F++        ++LD+ GGT
Sbjct: 1  MKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPC-RVLDLGGGT 53

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 22/248 (8%), Positives = 58/248 (23%), Gaps = 72/248 (29%)

Query: 6   YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLR 65
           +  F N +  +  M +     + +    I         + K+L + GG            
Sbjct: 7   FRRFLNHSTEHQCMQEF----MDKKLPGIIGRIGDTKSEIKILSIGGGA----------- 51

Query: 66  AYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125
                        G++        Q     +      ++    ++   +    ++    +
Sbjct: 52  -------------GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLEN 98

Query: 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID 185
              A+                           +      E   +    +   +  V  I 
Sbjct: 99  VKFAWHKETSSEYQ------------------SRMLEKKELQKWDFIHMIQMLYYVKDIP 140

Query: 186 KALSEAYRVLKPGGRFLCLEFSH--------------------------EEFKSMIESAG 219
             L   + +L    + L +  S                           ++   M+++ G
Sbjct: 141 ATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLG 200

Query: 220 FQYVTYEN 227
            +Y  Y+ 
Sbjct: 201 LKYECYDL 208

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 1/83 (1%)

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTI-AFGIRNVT 182
           +D  + Y           +      +        +           +   I         
Sbjct: 184 ADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGP 243

Query: 183 RIDKALSEAYRVLKPGGRFLCLE 205
            +D  L E +  +K GGR +  +
Sbjct: 244 EVDHQLKERFANMKEGGRIVSSK 266

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 22/62 (35%)

Query: 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYE 226
           D Y        + ++T  +  L +    +K GG+ +C E       +     G +   + 
Sbjct: 93  DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFI 152

Query: 227 NL 228
            L
Sbjct: 153 QL 154

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 27/85 (31%)

Query: 169 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------------------- 208
           +   T  +   + + + KA+ E  RVLK  GRFL ++                       
Sbjct: 83  FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPS 142

Query: 209 -------EEFKSMIESAGFQYVTYE 226
                   E+++M  +    Y   +
Sbjct: 143 HVRESSLSEWQAMFSANQLAYQDIQ 167

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 27/221 (12%), Positives = 60/221 (27%), Gaps = 29/221 (13%)

Query: 4   PMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFV 63
           P +E         D+ +  MS     L  +   D    +    +LDV GG   +   +  
Sbjct: 43  PFWEDLSADVALADSFDALMS-CDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAI-- 99

Query: 64  LRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123
                     ++ + G     + +             +++ +             ++ + 
Sbjct: 100 ALRAPHLRGTLVELAGPAERARRRFADA------GLADRVTVAEGDFFKPLPVTADVVLL 153

Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
           S     ++    +  +    +   P  RL  L+    E       +S             
Sbjct: 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL---------- 203

Query: 184 IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVT 224
                 +   +   GGR      + +E   +  SAG    +
Sbjct: 204 ------DLRMLTFMGGR----VRTRDEVVDLAGSAGLALAS 234

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 22/95 (23%)

Query: 154 FLEANAEELPIESDSYSAYTIAFGI----RNVTRIDKALSEAYRVLKPGG---------- 199
                            A   AF +     ++    +AL     +L+PGG          
Sbjct: 143 HQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE 202

Query: 200 --------RFLCLEFSHEEFKSMIESAGFQYVTYE 226
                   R   +  S EE +  +  +G++     
Sbjct: 203 SWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 5  MYEVFENVAKSYDTM--NDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGT 54
          MYE++  +A+ YDT+             + +            ++LD+A GT
Sbjct: 1  MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGT 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.88
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.88
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.85
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.82
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.82
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.82
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.8
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.76
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.76
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.75
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.73
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.72
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.71
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.7
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.69
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.68
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.66
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.66
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.65
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.64
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.63
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.63
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.62
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.62
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.61
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.58
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.58
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.57
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.56
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.56
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.56
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.53
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.51
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.5
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.49
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.48
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.48
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.38
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.37
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.35
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.33
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.29
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.26
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.26
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.24
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.24
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.19
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.17
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.14
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.14
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.09
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.07
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.07
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.03
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.01
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.01
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.93
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.92
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.83
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.74
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.72
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.69
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.69
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.68
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.58
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.58
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.56
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.55
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.47
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.41
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.31
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.28
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.26
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.25
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.25
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.25
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.22
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.19
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.15
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.14
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.13
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.06
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.05
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.02
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.02
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.0
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.99
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.97
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.87
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.83
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.62
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.58
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.42
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.39
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.36
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.33
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.98
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.65
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.83
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.64
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.76
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.24
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	91.83
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.07
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.5
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	89.31
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.78
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	88.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.91
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.76
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	87.03
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	86.92
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	86.91
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	86.71
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	85.2
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.72
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.44
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	83.25
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	82.37
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.71
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.42
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	80.83

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.88  E-value=1.8e-22  Score=168.25  Aligned_cols=137  Identities=23%  Similarity=0.374  Sum_probs=117.6

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+++....+++.+|||+|||+|.++             ..+++                   ...+++|+|+|+.|++.
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~i~~   52 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVA-------------NAFAP-------------------FVKKVVAFDLTEDILKV   52 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHH-------------HHHGG-------------------GSSEEEEEESCHHHHHH
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHH-------------HHHHH-------------------hCCEEEEEECCHHHHhh
Confidence            45667778899999999999999988             55554                   35679999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      |++++.                         ..+.+  ++++.++|+..+|++.++||+|+|..+++|++++.+++++++
T Consensus        53 A~~~~~-------------------------~~~~~--~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~  105 (231)
T d1vl5a_          53 ARAFIE-------------------------GNGHQ--QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAY  105 (231)
T ss_dssp             HHHHHH-------------------------HTTCC--SEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred             hhhccc-------------------------ccccc--cccccccccccccccccccccccccccccccCCHHHHHHHHH
Confidence            998887                         44544  799999999999988899999999999999999999999999


Q ss_pred             HhccCCcEEEEEecCH---------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         193 RVLKPGGRFLCLEFSH---------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++|||||++++.++..                           .++.++++++||.++++..+
T Consensus       106 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  168 (231)
T d1vl5a_         106 RVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF  168 (231)
T ss_dssp             HHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred             HhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence            9999999999876332                           77899999999998877654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=2.5e-22  Score=168.91  Aligned_cols=141  Identities=23%  Similarity=0.374  Sum_probs=122.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+++.++.+|+.+|||+|||+|..+             ..+..                   ...+++|+|+|+.|
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~-------------~~la~-------------------~~~~v~gvD~S~~~   50 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTA-------------LAFSP-------------------YVQECIGVDATKEM   50 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHH
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHH-------------HHHHH-------------------hCCeEEEEeCChhh
Confidence            44567888889999999999999999998             44444                   34579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      ++.|++++.                         +.+++  ++.+.++|++++|+++++||+|+|..++++++++..+++
T Consensus        51 l~~A~~~~~-------------------------~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~  103 (234)
T d1xxla_          51 VEVASSFAQ-------------------------EKGVE--NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVR  103 (234)
T ss_dssp             HHHHHHHHH-------------------------HHTCC--SEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHH
T ss_pred             hhhhhhhhc-------------------------ccccc--cccccccccccccccccccceeeeeceeecccCHHHHHH
Confidence            999999887                         55554  699999999999999999999999999999999999999


Q ss_pred             HHHHhccCCcEEEEEecCH---------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEFSH---------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~---------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++++|||||++++.++..                           .++.++++++||.+.++..+.
T Consensus       104 ~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~  170 (234)
T d1xxla_         104 EVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  170 (234)
T ss_dssp             HHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeEEEEee
Confidence            9999999999999976432                           678899999999988777654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=3e-21  Score=158.94  Aligned_cols=150  Identities=21%  Similarity=0.320  Sum_probs=117.2

Q ss_pred             HHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420           5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG   84 (241)
Q Consensus         5 ~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (241)
                      |.++||.+++.||.+......... ...+.+. .+  .++.+|||+|||+|.++             ..+          
T Consensus         2 ~~~~f~~~a~~Yd~w~~~~~~~~~-~~~~~~~-~~--~~~~~vLDiGcG~G~~~-------------~~~----------   54 (208)
T d1vlma_           2 MWHIFERFVNEYERWFLVHRFAYL-SELQAVK-CL--LPEGRGVEIGVGTGRFA-------------VPL----------   54 (208)
T ss_dssp             TTHHHHHTHHHHHHHHHHTHHHHH-HHHHHHH-HH--CCSSCEEEETCTTSTTH-------------HHH----------
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH-hh--CCCCeEEEECCCCcccc-------------ccc----------
Confidence            578999999999885322211111 1112222 22  34568999999999987             221          


Q ss_pred             CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420          85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI  164 (241)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  164 (241)
                                   ..++|+|+|+.+++.++++                                  ++.++++|++.++.
T Consensus        55 -------------~~~~giD~s~~~~~~a~~~----------------------------------~~~~~~~d~~~l~~   87 (208)
T d1vlma_          55 -------------KIKIGVEPSERMAEIARKR----------------------------------GVFVLKGTAENLPL   87 (208)
T ss_dssp             -------------TCCEEEESCHHHHHHHHHT----------------------------------TCEEEECBTTBCCS
T ss_pred             -------------ceEEEEeCChhhccccccc----------------------------------cccccccccccccc
Confidence                         2468999999999987743                                  36789999999999


Q ss_pred             CCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------------------------HHHHHHHHHC
Q psy1420         165 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------EEFKSMIESA  218 (241)
Q Consensus       165 ~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------~~~~~~l~~~  218 (241)
                      ++++||+|++..+++|++++.+++++++++|+|||.+++.+...                          +++.++++++
T Consensus        88 ~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~  167 (208)
T d1vlma_          88 KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKA  167 (208)
T ss_dssp             CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHc
Confidence            88999999999999999999999999999999999999876432                          8899999999


Q ss_pred             CCceEEEEEe
Q psy1420         219 GFQYVTYENL  228 (241)
Q Consensus       219 Gf~~~~~~~~  228 (241)
                      ||+.+++...
T Consensus       168 Gf~~i~v~~~  177 (208)
T d1vlma_         168 GFEEFKVVQT  177 (208)
T ss_dssp             TCEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            9998877653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.82  E-value=3.9e-20  Score=159.65  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=118.3

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.......++.+|||+|||+|..+             ..++.                  .....++|+|+|+.+++.
T Consensus        57 ~~l~~~~~l~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~i~~  105 (282)
T d2o57a1          57 SELAMTGVLQRQAKGLDLGAGYGGAA-------------RFLVR------------------KFGVSIDCLNIAPVQNKR  105 (282)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHH-------------hhhhc------------------cCCcEEEEEeccchhhhh
Confidence            44444556788999999999999988             33333                  134679999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      ++++..                         ..++. +++++.++|+.++|+++++||+|++..+++|++++.+++++++
T Consensus       106 a~~~~~-------------------------~~gl~-~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~  159 (282)
T d2o57a1         106 NEEYNN-------------------------QAGLA-DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECA  159 (282)
T ss_dssp             HHHHHH-------------------------HHTCT-TTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred             hhcccc-------------------------ccccc-ccccccccccccccccccccchhhccchhhhccCHHHHHHHHH
Confidence            999887                         66666 6899999999999998899999999999999999999999999


Q ss_pred             HhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         193 RVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++|||||++++.++..                        .++.++++++||..+...+.+
T Consensus       160 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~  220 (282)
T d2o57a1         160 RVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP  220 (282)
T ss_dssp             HHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             HhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEECc
Confidence            9999999999876322                        777899999999988877653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.9e-20  Score=154.35  Aligned_cols=131  Identities=18%  Similarity=0.210  Sum_probs=108.3

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|..+             ..++.                  ....+++++|+|+.|++.|++++. 
T Consensus        57 ~~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~l~~ak~~~~-  104 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRIT-------------KRLLL------------------PLFREVDMVDITEDFLVQAKTYLG-  104 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHH-------------HHTTT------------------TTCSEEEEEESCHHHHHHHHHHTG-
T ss_pred             CCCCCCEEEEeccCCCHhh-------------HHHHH------------------hcCCEEEEeecCHHHhhccccccc-
Confidence            3466779999999999988             44332                  124579999999999999999876 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccC
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKP  197 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkp  197 (241)
                                              ..+.+  ++++.++|+.+++.+.++||+|++..+++|++++  .+++++++++|||
T Consensus       105 ------------------------~~~~~--~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~  158 (222)
T d2ex4a1         105 ------------------------EEGKR--VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP  158 (222)
T ss_dssp             ------------------------GGGGG--EEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             ------------------------ccccc--ccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCC
Confidence                                    33332  5789999999998888899999999999999876  4899999999999


Q ss_pred             CcEEEEEecCH-----------------HHHHHHHHHCCCceEEEEEe
Q psy1420         198 GGRFLCLEFSH-----------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       198 gG~l~i~~~~~-----------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ||.+++.+...                 ++++++++++||++++.+..
T Consensus       159 ~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q  206 (222)
T d2ex4a1         159 NGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ  206 (222)
T ss_dssp             EEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence            99999875322                 88999999999999888764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=5e-20  Score=153.85  Aligned_cols=142  Identities=25%  Similarity=0.342  Sum_probs=109.1

Q ss_pred             CcchHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420           1 MKLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ   80 (241)
Q Consensus         1 ~~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~   80 (241)
                      ||....++|++++..||...+.........+...++.... +++.+|||+|||+|..+             ..+..    
T Consensus         1 ~~~~~~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~-------------~~l~~----   62 (246)
T d2avna1           1 MKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWS-------------LFLQE----   62 (246)
T ss_dssp             EECCHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHH-------------HHHHT----
T ss_pred             CCCcHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc-CCCCEEEEECCCCchhc-------------ccccc----
Confidence            7888999999999999875433332222222222222222 35669999999999998             44444    


Q ss_pred             hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC
Q psy1420          81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE  160 (241)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  160 (241)
                                     .+.+++|+|+|+.|++.++++..                                 ..++.+++.
T Consensus        63 ---------------~~~~v~giD~s~~~l~~a~~~~~---------------------------------~~~~~~~~~   94 (246)
T d2avna1          63 ---------------RGFEVVLVDPSKEMLEVAREKGV---------------------------------KNVVEAKAE   94 (246)
T ss_dssp             ---------------TTCEEEEEESCHHHHHHHHHHTC---------------------------------SCEEECCTT
T ss_pred             ---------------cceEEEEeecccccccccccccc---------------------------------ccccccccc
Confidence                           35689999999999999987643                                 235688999


Q ss_pred             CCCCCCCceeEEeee-ehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         161 ELPIESDSYSAYTIA-FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       161 ~~~~~~~~~D~V~~~-~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      .+|+++++||+|++. .+++|++++.++|+++.++|||||++++.....
T Consensus        95 ~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1          95 DLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             SCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             ccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            999988999999985 578999999999999999999999999876554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.80  E-value=1e-18  Score=145.80  Aligned_cols=142  Identities=16%  Similarity=0.149  Sum_probs=106.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..++.    ...           .+..+++|+|+|+.|++.|++++.   
T Consensus        38 ~~~~~vLDlGCGtG~~~-------------~~l~~----~~~-----------~~~~~v~giD~S~~ml~~A~~~~~---   86 (225)
T d1im8a_          38 TADSNVYDLGCSRGAAT-------------LSARR----NIN-----------QPNVKIIGIDNSQPMVERCRQHIA---   86 (225)
T ss_dssp             CTTCEEEEESCTTCHHH-------------HHHHH----TCC-----------CSSCEEEEECSCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEeccchhhHH-------------HHHHH----hhc-----------CCCCceEEeCCCHHHHHHHHHHhH---
Confidence            56789999999999988             33333    111           146789999999999999999876   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~~~~~~LkpgG  199 (241)
                                            ..... .++.+...|..+.+  .+.+|+|+++.+++++  +++.++|++++++|||||
T Consensus        87 ----------------------~~~~~-~~~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG  141 (225)
T d1im8a_          87 ----------------------AYHSE-IPVEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG  141 (225)
T ss_dssp             ----------------------TSCCS-SCEEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEE
T ss_pred             ----------------------hhccc-chhhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCc
Confidence                                  33322 35777777777665  4578999999999987  478899999999999999


Q ss_pred             EEEEEecCH--------------------------------------------HHHHHHHHHCCCceEEEEEecCceeEE
Q psy1420         200 RFLCLEFSH--------------------------------------------EEFKSMIESAGFQYVTYENLTFGVVAI  235 (241)
Q Consensus       200 ~l~i~~~~~--------------------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~  235 (241)
                      .+++.+...                                            +++.++++++||+.++.---++. .+.
T Consensus       142 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~~-f~~  220 (225)
T d1im8a_         142 VLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFN-FGS  220 (225)
T ss_dssp             EEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEETT-EEE
T ss_pred             eeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeCc-eEE
Confidence            999986432                                            67889999999998776433333 233


Q ss_pred             Eeeec
Q psy1420         236 HSGFK  240 (241)
Q Consensus       236 ~~~~~  240 (241)
                      ++|.|
T Consensus       221 ~~a~k  225 (225)
T d1im8a_         221 MIAVK  225 (225)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            56654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=3.6e-19  Score=149.74  Aligned_cols=139  Identities=22%  Similarity=0.347  Sum_probs=104.6

Q ss_pred             HHHHHhhhhhccccchhhhh--hhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420           5 MYEVFENVAKSYDTMNDAMS--FGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI   82 (241)
Q Consensus         5 ~~~~f~~~~~~yd~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (241)
                      |.++|+.++..||.+.....  ......+...+.+.....+..+|||+|||+|..+             ..++.      
T Consensus         1 ~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~-------------~~l~~------   61 (251)
T d1wzna1           1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPT-------------LELAE------   61 (251)
T ss_dssp             CCGGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHH-------------HHHHH------
T ss_pred             CcchhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccc-------------hhhcc------
Confidence            35678889999988632221  1212223444555666677789999999999988             44444      


Q ss_pred             hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420          83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL  162 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  162 (241)
                                   ....++|+|+|+.|++.|++++.                         +.+.   ++.+.++|+.++
T Consensus        62 -------------~~~~v~gvD~s~~mi~~a~~~~~-------------------------~~~~---~i~~~~~d~~~l  100 (251)
T d1wzna1          62 -------------RGYEVVGLDLHEEMLRVARRKAK-------------------------ERNL---KIEFLQGDVLEI  100 (251)
T ss_dssp             -------------TTCEEEEEESCHHHHHHHHHHHH-------------------------HTTC---CCEEEESCGGGC
T ss_pred             -------------cceEEEEEeeccccccccccccc-------------------------cccc---cchheehhhhhc
Confidence                         35679999999999999999887                         4332   488999999999


Q ss_pred             CCCCCceeEEeeee-hhhcc--ccHHHHHHHHHHhccCCcEEEEE
Q psy1420         163 PIESDSYSAYTIAF-GIRNV--TRIDKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       163 ~~~~~~~D~V~~~~-~l~~~--~~~~~~l~~~~~~LkpgG~l~i~  204 (241)
                      +++ ++||+|+|.+ +++++  ++..++|++++++|||||++++.
T Consensus       101 ~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         101 AFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             CCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            876 5899999874 55554  45679999999999999999873

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.1e-19  Score=150.78  Aligned_cols=139  Identities=16%  Similarity=0.139  Sum_probs=117.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.+...|+.+|||+|||+|..+             ..+..                  .....++|+|+|+.+++
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~-------------~~la~------------------~~~~~v~GvD~s~~~~~   70 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGSGEML-------------CTWAR------------------DHGITGTGIDMSSLFTA   70 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHH-------------HHHHH------------------HTCCEEEEEESCHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHH-------------HHHHH------------------hcCCEEEEEecccchhh
Confidence            456778888899999999999999887             33332                  13468999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .+++++.                         +.++. +++++..+|+.++. ++++||+|+|..++++++++.++++++
T Consensus        71 ~ar~~~~-------------------------~~gl~-~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~  123 (245)
T d1nkva_          71 QAKRRAE-------------------------ELGVS-ERVHFIHNDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELL  123 (245)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEEESCCTTCC-CSSCEEEEEEESCGGGTSSSHHHHHHH
T ss_pred             HHHHHHH-------------------------Hhhcc-ccchhhhhHHhhcc-ccCceeEEEEEehhhccCCHHHHHHHH
Confidence            9999888                         66665 57999999999874 568999999999999999999999999


Q ss_pred             HHhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420         192 YRVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++|||||++++.+...                        .++...++++||.++.....
T Consensus       124 ~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~~~~~  184 (245)
T d1nkva_         124 AQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLA  184 (245)
T ss_dssp             TTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred             HHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEEEEeC
Confidence            99999999999976321                        77899999999988765543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.76  E-value=2.9e-18  Score=146.55  Aligned_cols=137  Identities=16%  Similarity=0.238  Sum_probs=113.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.                  .....++++|+++.|++
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t-------------~~ll~------------------~~~~~v~~vD~s~~~l~  130 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRIT-------------KNLLT------------------KLYATTDLLEPVKHMLE  130 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHH-------------HHTHH------------------HHCSEEEEEESCHHHHH
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhh-------------HHHHh------------------hcCceEEEEcCCHHHHH
Confidence            456677777778889999999999988             44443                  13457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~  189 (241)
                      .|+++..                         .  .  +.+++.+.|+.+.+.+.++||+|++.++++|+++.  .++|+
T Consensus       131 ~a~~~~~-------------------------~--~--~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~  181 (254)
T d1xtpa_         131 EAKRELA-------------------------G--M--PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFK  181 (254)
T ss_dssp             HHHHHTT-------------------------T--S--SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             hhhcccc-------------------------c--c--ccceeEEccccccccCCCccceEEeeccccccchhhhHHHHH
Confidence            9998765                         1  1  35789999999998888899999999999999876  48899


Q ss_pred             HHHHhccCCcEEEEEecC------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEFS------------------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~------------------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++++|||||++++.+..                  .++++++++++||++++.+.-
T Consensus       182 ~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q  238 (254)
T d1xtpa_         182 HCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             HHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             HHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence            999999999999986532                  178999999999999887653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=3.7e-18  Score=140.57  Aligned_cols=107  Identities=21%  Similarity=0.324  Sum_probs=90.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..+..                   ....++|+|+|+.|++.|++++.   
T Consensus        36 ~~~~~ILDiGcG~G~~~-------------~~la~-------------------~~~~v~giD~S~~~i~~ak~~~~---   80 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFS-------------FLLED-------------------YGFEVVGVDISEDMIRKAREYAK---   80 (226)
T ss_dssp             CSCCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCEEEEECCCcchhh-------------hhHhh-------------------hhcccccccccccchhhhhhhhc---
Confidence            46679999999999988             44444                   35689999999999999998876   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG  199 (241)
                                            +.+.   .+.+++.|+..++.+.++||+|+|..+++|++  ++.++|+++.++|||||
T Consensus        81 ----------------------~~~~---~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG  135 (226)
T d1ve3a1          81 ----------------------SRES---NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG  135 (226)
T ss_dssp             ----------------------HTTC---CCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEE
T ss_pred             ----------------------cccc---cccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCc
Confidence                                  3332   46788999999998889999999999999986  67789999999999999


Q ss_pred             EEEEEecCH
Q psy1420         200 RFLCLEFSH  208 (241)
Q Consensus       200 ~l~i~~~~~  208 (241)
                      ++++.....
T Consensus       136 ~lii~~~~~  144 (226)
T d1ve3a1         136 KFIMYFTDL  144 (226)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEEcCc
Confidence            998877654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.75  E-value=1.1e-17  Score=140.81  Aligned_cols=133  Identities=20%  Similarity=0.281  Sum_probs=95.2

Q ss_pred             HHhhhhhccccchhh-hhhhhHHHHHHHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420           8 VFENVAKSYDTMNDA-MSFGIHRLWKDIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG   84 (241)
Q Consensus         8 ~f~~~~~~yd~~~~~-~~~~~~~~~~~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (241)
                      +|+++|..||..... +.   .+.+.+.+.+.+.  ..++.+|||+|||+|..+             ..+++        
T Consensus         2 ~y~~~A~~YD~l~~~~~~---y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~-------------~~l~~--------   57 (246)
T d1y8ca_           2 CYNKFAHIYDKLIRADVD---YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLT-------------ENLCP--------   57 (246)
T ss_dssp             CHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTH-------------HHHGG--------
T ss_pred             CHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHH-------------HHHHH--------
Confidence            467778888753211 11   1223333333222  234568999999999998             55554        


Q ss_pred             CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420          85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI  164 (241)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  164 (241)
                                 .+.+++|+|+|+.|++.|++++.                         ..+.   +++++++|+..++.
T Consensus        58 -----------~g~~v~GvD~S~~ml~~A~~~~~-------------------------~~~~---~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          58 -----------KFKNTWAVDLSQEMLSEAENKFR-------------------------SQGL---KPRLACQDISNLNI   98 (246)
T ss_dssp             -----------GSSEEEEECSCHHHHHHHHHHHH-------------------------HTTC---CCEEECCCGGGCCC
T ss_pred             -----------hCCccEeeccchhhhhhcccccc-------------------------ccCc---cceeeccchhhhcc
Confidence                       35679999999999999998876                         4343   48899999998876


Q ss_pred             CCCceeEEeee-ehhhccc---cHHHHHHHHHHhccCCcEEEEE
Q psy1420         165 ESDSYSAYTIA-FGIRNVT---RIDKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       165 ~~~~~D~V~~~-~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~  204 (241)
                       .++||+|+|. .+++++.   ++.++|++++++|||||.|++.
T Consensus        99 -~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          99 -NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence             4689999986 4566554   5668999999999999998863

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.73  E-value=1.7e-17  Score=138.48  Aligned_cols=122  Identities=10%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||+|||+|..+             ..+..                   ...+++|+|+|+.+++.++++..    
T Consensus        20 ~~~~VLDiGcG~G~~~-------------~~l~~-------------------~g~~v~giD~s~~~i~~a~~~~~----   63 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFT-------------SRLQE-------------------HFNDITCVEASEEAISHAQGRLK----   63 (225)
T ss_dssp             CSSCEEEESCTTSHHH-------------HHHTT-------------------TCSCEEEEESCHHHHHHHHHHSC----
T ss_pred             CCCcEEEEeCCCcHHH-------------HHHHH-------------------cCCeEEEEeCcHHHhhhhhcccc----
Confidence            4568999999999988             44433                   35679999999999999987754    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH-HhccCCcEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRF  201 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~-~~LkpgG~l  201 (241)
                                                 .++.+..+++...+. +++||+|++..+++|++++..+|.+++ ++|||||.+
T Consensus        64 ---------------------------~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l  115 (225)
T d2p7ia1          64 ---------------------------DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRL  115 (225)
T ss_dssp             ---------------------------SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEE
T ss_pred             ---------------------------ccccccccccccccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceE
Confidence                                       358889999888765 478999999999999999999999998 799999999


Q ss_pred             EEEecC-----------------------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420         202 LCLEFS-----------------------------------HEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       202 ~i~~~~-----------------------------------~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ++....                                   .+.++++++++||++++.+..
T Consensus       116 ~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~~~  177 (225)
T d2p7ia1         116 FLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI  177 (225)
T ss_dssp             EEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEEEE
Confidence            986422                                   278999999999998886643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.72  E-value=4.1e-17  Score=140.97  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=105.3

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++.+|||+|||+|.++             ..++.    ...            ....++|+|+|+.+++.++++.. 
T Consensus        24 ~~~~~~~ILDiGcG~G~~~-------------~~la~----~~~------------~~~~v~giD~s~~~l~~a~~~~~-   73 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLG-------------LVLMP----LLP------------EGSKYTGIDSGETLLAEARELFR-   73 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHH-------------HHHTT----TSC------------TTCEEEEEECCHHHHHHHHHHHH-
T ss_pred             ccCCcCEEEEecCcCCHHH-------------HHHHH----hCC------------CCCEEEEEecchhHhhhhhcccc-
Confidence            4467789999999999988             33333    100            24679999999999999999887 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                              ..+   .++++.+.|+.+++.+ ++||+|++..+++|++++..++++++++|||||
T Consensus        74 ------------------------~~~---~~~~f~~~d~~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG  125 (281)
T d2gh1a1          74 ------------------------LLP---YDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG  125 (281)
T ss_dssp             ------------------------SSS---SEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE
T ss_pred             ------------------------ccc---cccccccccccccccc-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCc
Confidence                                    332   2488999999988764 579999999999999999999999999999999


Q ss_pred             EEEEEecCH-----------------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420         200 RFLCLEFSH-----------------------------------------EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       200 ~l~i~~~~~-----------------------------------------~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .+++.+...                                         .++..+++++||+.++...
T Consensus       126 ~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~eaGf~~i~~~~  194 (281)
T d2gh1a1         126 KIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRV  194 (281)
T ss_dssp             EEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCeEEEEEE
Confidence            999987432                                         3466779999999887654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.71  E-value=9e-17  Score=136.61  Aligned_cols=140  Identities=20%  Similarity=0.249  Sum_probs=112.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.++..+..+|||||||+|.++             ..++.       .          .+...++++|+ +.+++
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~-------------~~la~-------~----------~p~~~~~~~D~-~~~~~  117 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFA-------------AAIAR-------R----------APHVSATVLEM-AGTVD  117 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHH-------------HHHHH-------H----------CTTCEEEEEEC-TTHHH
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHH-------------HHHHH-------h----------cceeEEEEccC-HHHHH
Confidence            456667777778889999999999988             44443       1          13567889998 67888


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~  189 (241)
                      .+++++.                         +.++. +++++..+|+.+. . ..+||+|++..++|++++.+  ++|+
T Consensus       118 ~a~~~~~-------------------------~~~~~-~rv~~~~~D~~~~-~-~~~~D~v~~~~vlh~~~d~~~~~~L~  169 (253)
T d1tw3a2         118 TARSYLK-------------------------DEGLS-DRVDVVEGDFFEP-L-PRKADAIILSFVLLNWPDHDAVRILT  169 (253)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEEECCTTSC-C-SSCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             HHHHHHH-------------------------Hhhcc-cchhhccccchhh-c-ccchhheeeccccccCCchhhHHHHH
Confidence            8888887                         55655 6899999998653 2 24699999999999997764  7899


Q ss_pred             HHHHhccCCcEEEEEecCH----------------------------HHHHHHHHHCCCceEEEEEecC
Q psy1420         190 EAYRVLKPGGRFLCLEFSH----------------------------EEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~----------------------------~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      +++++|||||++++.+...                            ++++++++++||+++++..+..
T Consensus       170 ~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~  238 (253)
T d1tw3a2         170 RCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS  238 (253)
T ss_dssp             HHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence            9999999999999987432                            7889999999999999887753

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.70  E-value=1e-16  Score=135.92  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      ++..+..+++... +++.+|||+|||+|..+             ..++.                  .....++|+|+|+
T Consensus        10 ~N~vK~~lI~~~~-~~~~~VLDlGCG~G~~~-------------~~~~~------------------~~~~~v~GiD~S~   57 (252)
T d1ri5a_          10 NNFIKACLIRLYT-KRGDSVLDLGCGKGGDL-------------LKYER------------------AGIGEYYGVDIAE   57 (252)
T ss_dssp             HHHHHHHHHHHHC-CTTCEEEEETCTTTTTH-------------HHHHH------------------HTCSEEEEEESCH
T ss_pred             HHHHHHHHHHHhC-CCcCEEEEecccCcHHH-------------HHHHH------------------cCCCeEEEecCCH
Confidence            3444455555433 46779999999999887             44443                  1345799999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccc----
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVT----  182 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~----  182 (241)
                      .|++.|+++..                         ..+.. .++.+.++|+...+. ..++||+|+|.+++|++.    
T Consensus        58 ~~l~~A~~r~~-------------------------~~~~~-~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~  111 (252)
T d1ri5a_          58 VSINDARVRAR-------------------------NMKRR-FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSE  111 (252)
T ss_dssp             HHHHHHHHHHH-------------------------TSCCS-SEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHH
T ss_pred             HHHHHHHHHHH-------------------------hcCCC-cceEEEEcchhhhcccccccceEEEEcceeeecCCCHH
Confidence            99999998876                         33332 468899999877665 356899999999999873    


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLEFSH  208 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~~~~  208 (241)
                      +...++++++++|||||++++.....
T Consensus       112 ~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_         112 SLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             HHHHHHHHHhceeCCCCEEEEEecCH
Confidence            34689999999999999998865443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=2.1e-16  Score=137.35  Aligned_cols=138  Identities=17%  Similarity=0.185  Sum_probs=115.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+..+||.+|||+|||.|..+             ..++.                  ..+++++|+++|+.+++
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a-------------~~~a~------------------~~g~~v~git~s~~Q~~   99 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATM-------------MRAVE------------------KYDVNVVGLTLSKNQAN   99 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHH-------------HHHHh------------------cCCcceEEEeccHHHHH
Confidence            577888889999999999999999988             44443                  25689999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~  189 (241)
                      .+++++.                         ..+.. +++++...|...++   ++||.|++...+.|+.  +...+++
T Consensus       100 ~a~~~~~-------------------------~~g~~-~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~  150 (285)
T d1kpga_         100 HVQQLVA-------------------------NSENL-RSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFS  150 (285)
T ss_dssp             HHHHHHH-------------------------TCCCC-SCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHH
T ss_pred             HHHHHHH-------------------------hhhhh-hhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHH
Confidence            9999987                         66666 68999999988774   5799999999999985  4589999


Q ss_pred             HHHHhccCCcEEEEEecC-------------------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEFS-------------------------------------HEEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~-------------------------------------~~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      +++++|||||++++.++.                                     ..++..+++++||.+++++++.
T Consensus       151 ~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         151 LAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhcccccch
Confidence            999999999999985543                                     1667788999999999888763

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=3.2e-16  Score=136.54  Aligned_cols=138  Identities=14%  Similarity=0.193  Sum_probs=113.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.++.++|.+|||||||.|..+             ..++.                  ...+.++|+++|+.+++
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~-------------~~~a~------------------~~g~~v~git~s~~q~~   98 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTM-------------RHAVA------------------EYDVNVIGLTLSENQYA   98 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHH-------------HHHHH------------------hcCcceeeccchHHHHH
Confidence            567888889999999999999999987             44433                  25678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--------
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--------  183 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--------  183 (241)
                      .+++++.                         ..++. .++.+...|...   .+++||.|++...+.|+.+        
T Consensus        99 ~a~~~~~-------------------------~~~l~-~~v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~  149 (291)
T d1kpia_          99 HDKAMFD-------------------------EVDSP-RRKEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFE  149 (291)
T ss_dssp             HHHHHHH-------------------------HSCCS-SCEEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTT
T ss_pred             HHHHHHH-------------------------hhccc-hhhhhhhhcccc---cccccceEeechhHHhcchhhhhhHHH
Confidence            9999988                         66666 567777777643   3578999999999999865        


Q ss_pred             -HHHHHHHHHHhccCCcEEEEEecC-------------------------------------HHHHHHHHHHCCCceEEE
Q psy1420         184 -IDKALSEAYRVLKPGGRFLCLEFS-------------------------------------HEEFKSMIESAGFQYVTY  225 (241)
Q Consensus       184 -~~~~l~~~~~~LkpgG~l~i~~~~-------------------------------------~~~~~~~l~~~Gf~~~~~  225 (241)
                       ....+++++++|||||++++.++.                                     ..++...++++||+++..
T Consensus       150 ~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~  229 (291)
T d1kpia_         150 RYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY  229 (291)
T ss_dssp             HHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhccccccccee
Confidence             579999999999999999986532                                     177788899999999888


Q ss_pred             EEec
Q psy1420         226 ENLT  229 (241)
Q Consensus       226 ~~~~  229 (241)
                      +++.
T Consensus       230 ~~~~  233 (291)
T d1kpia_         230 HRIG  233 (291)
T ss_dssp             EECG
T ss_pred             eecc
Confidence            7763

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=135.78  Aligned_cols=139  Identities=13%  Similarity=0.250  Sum_probs=101.1

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ..++..+|||+|||+|..+             ..++..+..   ..+.        ....++++|+|+.|++.++++...
T Consensus        37 ~~~~~~~VLDiGcG~G~~~-------------~~ll~~l~~---~~~~--------~~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          37 DTKSEIKILSIGGGAGEID-------------LQILSKVQA---QYPG--------VCINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             TTCSEEEEEEETCTTSHHH-------------HHHHHHHHH---HSTT--------CEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             cCCCCCeEEEEcCCCCHHH-------------HHHHHHhhh---hccC--------CceEEEEEeCcHHHHHHHHHHHhh
Confidence            3456668999999999988             444442211   1111        234689999999999999998762


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC------CCCCCCceeEEeeeehhhccccHHHHHHHHHH
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE------LPIESDSYSAYTIAFGIRNVTRIDKALSEAYR  193 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~  193 (241)
                      .                        ..+..-.+.+...++++      .+.+.++||+|++..++++++++.++|+++++
T Consensus        93 ~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~  148 (280)
T d1jqea_          93 I------------------------SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHS  148 (280)
T ss_dssp             C------------------------CSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred             c------------------------cccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHh
Confidence            1                        11121123445555432      24557899999999999999999999999999


Q ss_pred             hccCCcEEEEEecCH--------------------------HHHHHHHHHCCCceEEEE
Q psy1420         194 VLKPGGRFLCLEFSH--------------------------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       194 ~LkpgG~l~i~~~~~--------------------------~~~~~~l~~~Gf~~~~~~  226 (241)
                      +|+|||.+++...+.                          +.+.++|++.||..+...
T Consensus       149 ~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~G~~~~~~~  207 (280)
T d1jqea_         149 LLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYD  207 (280)
T ss_dssp             TEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred             hCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHCCCceEEEe
Confidence            999999998876443                          789999999999865543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=4.6e-16  Score=134.74  Aligned_cols=137  Identities=16%  Similarity=0.167  Sum_probs=112.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+..+||.+|||+|||+|..+             ..++.                  ..+..++++|+|+.+++
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a-------------~~~a~------------------~~g~~v~gi~ls~~q~~   89 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTM-------------RRAVE------------------RFDVNVIGLTLSKNQHA   89 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHH-------------HHHHH------------------hCceeEEEecchHHHHH
Confidence            567888888999999999999999887             33332                  24678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~  189 (241)
                      .+++++.                         +.++. ..+.+...|....   +++||.|++..++.|+.+  ...+++
T Consensus        90 ~a~~~~~-------------------------~~~l~-~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~  140 (280)
T d2fk8a1          90 RCEQVLA-------------------------SIDTN-RSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFK  140 (280)
T ss_dssp             HHHHHHH-------------------------TSCCS-SCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHH
T ss_pred             HHHHHHH-------------------------hhccc-cchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHH
Confidence            9999988                         66665 5677777776655   468999999999999864  489999


Q ss_pred             HHHHhccCCcEEEEEec-------------------------------------CHHHHHHHHHHCCCceEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLEF-------------------------------------SHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~-------------------------------------~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++++|||||++++.+.                                     +..++.+.++++||.+...+++
T Consensus       141 ~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         141 RCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSL  216 (280)
T ss_dssp             HHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred             HHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhccccceeeec
Confidence            99999999999998541                                     1167888899999999887765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.4e-16  Score=129.95  Aligned_cols=162  Identities=14%  Similarity=0.113  Sum_probs=101.8

Q ss_pred             HHHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          32 KDIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        32 ~~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.  ..++.+|||+|||+|..+             ..++.                  .....++|+|+|+.+
T Consensus        38 ~~~~~~~~~~~~~~g~~vLDlGcG~G~~~-------------~~~~~------------------~~~~~v~giD~S~~~   86 (257)
T d2a14a1          38 LECLHKTFGPGGLQGDTLIDIGSGPTIYQ-------------VLAAC------------------DSFQDITLSDFTDRN   86 (257)
T ss_dssp             HHHHHHHHSTTSCCEEEEEESSCTTCCGG-------------GTTGG------------------GTEEEEEEEESCHHH
T ss_pred             HHHHHHHhcccCCCCCEEEEECCCCCHhH-------------HHHhc------------------cccCcEEEecCCHHH
Confidence            344444433  356779999999999877             22221                  123479999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeee---ecc---ccCCCCCCe-eE----EecccCCCCCCCCceeEEeeeehh
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVT---RID---KIDIPNPRL-RF----LEANAEELPIESDSYSAYTIAFGI  178 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~-~~----~~~d~~~~~~~~~~~D~V~~~~~l  178 (241)
                      ++.+++++...+   ..+.+......+..+.   ...   ..... ..+ ..    ...+....+.+.++||+|++.+++
T Consensus        87 i~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l  162 (257)
T d2a14a1          87 REELEKWLKKEP---GAYDWTPAVKFACELEGNSGRWEEKEEKLR-AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM  162 (257)
T ss_dssp             HHHHHHHHHTCT---TCCCCHHHHHHHHHHTTCGGGHHHHHHHHH-HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred             HHHHHHHHhhcc---ccchhhhHHHHHHHhccccchHHHHHHHHh-hhhhcccccccccccccccccCCcccEEeehhhH
Confidence            999999887321   1111111000000000   000   00000 000 01    111222235567899999999999


Q ss_pred             hccc----cHHHHHHHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCceEEEEEe
Q psy1420         179 RNVT----RIDKALSEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       179 ~~~~----~~~~~l~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +++.    ++..++++++++|||||++++.++                  +.++++++++++||++++++..
T Consensus       163 ~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         163 ECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             HHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence            9874    567899999999999999998763                  2399999999999999888654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=7.3e-16  Score=125.84  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      ...++++|||+|||+|..+             ..++.                   ...+++++|+|+.+++.+++.+. 
T Consensus        27 ~~~~~grvLDiGcG~G~~~-------------~~la~-------------------~g~~v~gvD~s~~~l~~a~~~~~-   73 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGNGRNS-------------LYLAA-------------------NGYDVTAWDKNPASMANLERIKA-   73 (198)
T ss_dssp             TTSCSCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH-
T ss_pred             ccCCCCcEEEECCCCCHHH-------------HHHHH-------------------HhhhhccccCcHHHHHHHHHHhh-
Confidence            3334459999999999988             44444                   45689999999999999998887 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccC
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKP  197 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkp  197 (241)
                                              ..+++  ++.+...|+...+. +++||+|++..+++++++.  .+++++++++|+|
T Consensus        74 ------------------------~~~~~--~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~p  126 (198)
T d2i6ga1          74 ------------------------AEGLD--NLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKP  126 (198)
T ss_dssp             ------------------------HTTCT--TEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEE
T ss_pred             ------------------------hcccc--chhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCC
Confidence                                    55555  68889999888775 5789999999999998654  5899999999999


Q ss_pred             CcEEEEEecCH----------------HHHHHHHHHCCCceEEEE
Q psy1420         198 GGRFLCLEFSH----------------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       198 gG~l~i~~~~~----------------~~~~~~l~~~Gf~~~~~~  226 (241)
                      ||++++..+..                .++.+.+  +||.++...
T Consensus       127 gG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~--~~~~i~~~~  169 (198)
T d2i6ga1         127 GGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY--EGWDMLKYN  169 (198)
T ss_dssp             EEEEEEEEEBC---------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred             CcEEEEEEecCCccCCCCCCCCCccCHHHHHHHh--CCCeEEEee
Confidence            99998875432                4666665  577776544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.7e-16  Score=133.03  Aligned_cols=165  Identities=14%  Similarity=0.166  Sum_probs=116.2

Q ss_pred             chHHHHHhhhhhccccchhhhhhh-------hHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhh
Q psy1420           3 LPMYEVFENVAKSYDTMNDAMSFG-------IHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVI   75 (241)
Q Consensus         3 ~~~~~~f~~~~~~yd~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~   75 (241)
                      +.+...|++.+..|+..+......       +.+...+.+.+.+. .+|.+|||||||+|..+             ..++
T Consensus         7 e~~~~~w~~~~~~yd~~~~~l~~~~~~~m~~w~~~~~~~la~~~~-~~g~~VLdIGcG~G~~a-------------~~~a   72 (229)
T d1zx0a1           7 ENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAAS-SKGGRVLEVGFGMAIAA-------------SKVQ   72 (229)
T ss_dssp             CBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHHT-TTCEEEEEECCTTSHHH-------------HHHH
T ss_pred             ccchhhhhhhhhcCCcHHHHHHHhchHHHHHHHHHHHHHHHHhhc-cCCCeEEEeeccchHHH-------------HHHH
Confidence            456788999998898754322111       22233344544444 56789999999999888             4333


Q ss_pred             hhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEE
Q psy1420          76 PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL  155 (241)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (241)
                      .                  ....+++++|+|+.+++.++++..                         ...   .++.++
T Consensus        73 ~------------------~~~~~v~~id~s~~~~~~a~~~~~-------------------------~~~---~~~~~~  106 (229)
T d1zx0a1          73 E------------------APIDEHWIIECNDGVFQRLRDWAP-------------------------RQT---HKVIPL  106 (229)
T ss_dssp             T------------------SCEEEEEEEECCHHHHHHHHHHGG-------------------------GCS---SEEEEE
T ss_pred             H------------------cCCCeEEEeCCCHHHHHHHHHHhh-------------------------hcc---cccccc
Confidence            3                  123579999999999999999877                         322   245666


Q ss_pred             ecccCCC--CCCCCceeEEe-----eeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----------------HHH
Q psy1420         156 EANAEEL--PIESDSYSAYT-----IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----------------EEF  211 (241)
Q Consensus       156 ~~d~~~~--~~~~~~~D~V~-----~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------~~~  211 (241)
                      ..++...  +.+.++||.|+     +...++++.++..++++++|+|||||+|++.+...                 +.+
T Consensus       107 ~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (229)
T d1zx0a1         107 KGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQ  186 (229)
T ss_dssp             ESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHT
T ss_pred             cccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHH
Confidence            6665533  45567888887     45677788899999999999999999998743211                 566


Q ss_pred             HHHHHHCCCceEEEEE
Q psy1420         212 KSMIESAGFQYVTYEN  227 (241)
Q Consensus       212 ~~~l~~~Gf~~~~~~~  227 (241)
                      ...+.++||+..+++.
T Consensus       187 ~~~l~~agF~~~~i~~  202 (229)
T d1zx0a1         187 VPALLEAGFRRENIRT  202 (229)
T ss_dssp             HHHHHHTTCCGGGEEE
T ss_pred             HHHHHHCCCeeEEEEE
Confidence            6788899998766654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.63  E-value=2.6e-15  Score=128.02  Aligned_cols=139  Identities=17%  Similarity=0.214  Sum_probs=110.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+++.++..+..+|||||||+|..+             ..++.       .          .+..+++++|+ +.+++
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~-------------~~l~~-------~----------~P~~~~~~~Dl-p~~~~  118 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGML-------------AAIAL-------R----------APHLRGTLVEL-AGPAE  118 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHH-------------HHHHH-------H----------CTTCEEEEEEC-HHHHH
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHH-------------HHHHH-------h----------hcCcEEEEecC-hHHHH
Confidence            355666667777789999999999988             44443       1          13567899997 77888


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~  189 (241)
                      .+++++.                         ..+.. +++.+...|+.. +.+ .++|+|++.+++|++++.  .++|+
T Consensus       119 ~a~~~~~-------------------------~~~~~-~ri~~~~~d~~~-~~p-~~~D~v~~~~vLh~~~d~~~~~lL~  170 (256)
T d1qzza2         119 RARRRFA-------------------------DAGLA-DRVTVAEGDFFK-PLP-VTADVVLLSFVLLNWSDEDALTILR  170 (256)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEEECCTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             HHHHHHh-------------------------hcCCc-ceeeeeeeeccc-ccc-ccchhhhccccccccCcHHHHHHHH
Confidence            8888877                         55555 578999998775 333 459999999999999765  47799


Q ss_pred             HHHHhccCCcEEEEEecCH-----------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420         190 EAYRVLKPGGRFLCLEFSH-----------------------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~-----------------------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ++++.|||||++++.+...                             ++|+++++++||++++.....
T Consensus       171 ~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~~~  239 (256)
T d1qzza2         171 GCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSG  239 (256)
T ss_dssp             HHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEEC
T ss_pred             HHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEEeC
Confidence            9999999999999987532                             789999999999999987754

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=1.7e-15  Score=123.06  Aligned_cols=133  Identities=17%  Similarity=0.172  Sum_probs=109.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ...+..++..+.+.++.+|||+|||+|..+             ..++.                   ...+++++|+++.
T Consensus        19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s-------------~~lA~-------------------~~~~V~avD~~~~   66 (186)
T d1l3ia_          19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVT-------------LELAG-------------------RVRRVYAIDRNPE   66 (186)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHH-------------HHHHT-------------------TSSEEEEEESCHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCeEccc-------------ccccc-------------------cceEEEEecCCHH
Confidence            446777888889999999999999999988             44443                   3567999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      +++.+++++.                         +.++. ++++++++|+.+.+.+...||+|++....+   +....+
T Consensus        67 ~l~~a~~n~~-------------------------~~gl~-~~v~~~~gda~~~~~~~~~~D~v~~~~~~~---~~~~~~  117 (186)
T d1l3ia_          67 AISTTEMNLQ-------------------------RHGLG-DNVTLMEGDAPEALCKIPDIDIAVVGGSGG---ELQEIL  117 (186)
T ss_dssp             HHHHHHHHHH-------------------------HTTCC-TTEEEEESCHHHHHTTSCCEEEEEESCCTT---CHHHHH
T ss_pred             HHHHHHHHHH-------------------------HcCCC-cceEEEECchhhcccccCCcCEEEEeCccc---cchHHH
Confidence            9999999998                         77775 589999999888776677899999876654   456789


Q ss_pred             HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCce
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQY  222 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~  222 (241)
                      +.+.+.|||||++++.....   ..+.+.+++.|+..
T Consensus       118 ~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         118 RIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             HHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCe
Confidence            99999999999998876654   55667888888853

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=1.3e-15  Score=128.44  Aligned_cols=134  Identities=15%  Similarity=0.142  Sum_probs=105.5

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      +.+..+||.+|||+|||+|.++             ..++.. +                +...++++|+|+.|++.+..+
T Consensus        68 ~~l~ikpG~~VLDlGcGsG~~~-------------~~la~~-~----------------~~g~V~aVDiS~~~i~~a~~~  117 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASAGTTP-------------SHVADI-A----------------DKGIVYAIEYAPRIMRELLDA  117 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHH-------------HHHHHH-T----------------TTSEEEEEESCHHHHHHHHHH
T ss_pred             HhCCCCCCCEEEEeCEEcCHHH-------------HHHHHh-C----------------CCCEEEEEeCcHHHHHHHHHH
Confidence            4556799999999999999988             555441 0                246899999999999999888


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                      +.                         +.    +++..+..|....+ +....+|++++...+++..++..++.++++.|
T Consensus       118 a~-------------------------~~----~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~L  168 (230)
T d1g8sa_         118 CA-------------------------ER----ENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFL  168 (230)
T ss_dssp             TT-------------------------TC----TTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHE
T ss_pred             Hh-------------------------hh----cccceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhc
Confidence            76                         21    35666777766553 44456777777777888888999999999999


Q ss_pred             cCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec
Q psy1420         196 KPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       196 kpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      ||||++++.....            ++..+.|+++||++++..++.
T Consensus       169 KpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~  214 (230)
T d1g8sa_         169 KKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIE  214 (230)
T ss_dssp             EEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECT
T ss_pred             ccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence            9999998875333            777889999999999888773

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=7e-15  Score=119.97  Aligned_cols=129  Identities=14%  Similarity=0.261  Sum_probs=101.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+++.+...++.+|||+|||+|..+             ..++.                   ....++++|+++.+++
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~-------------~~la~-------------------~~~~v~~iD~s~~~i~   88 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIG-------------IALAD-------------------EVKSTTMADINRRAIK   88 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHHHH
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhH-------------HHHHh-------------------hccccceeeeccccch
Confidence            456778888889999999999999988             44433                   3457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc-HHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-IDKALSE  190 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~-~~~~l~~  190 (241)
                      .+++++.                         ..++.+.++++..+|..+ +.++++||+|+++..+++..+ ...++.+
T Consensus        89 ~a~~n~~-------------------------~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~  142 (194)
T d1dusa_          89 LAKENIK-------------------------LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEE  142 (194)
T ss_dssp             HHHHHHH-------------------------HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHH
T ss_pred             hHHHHHH-------------------------HhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHH
Confidence            9999988                         666665678999999876 456789999999888877665 4788999


Q ss_pred             HHHhccCCcEEEEEecCH---HHHHHHHHHC
Q psy1420         191 AYRVLKPGGRFLCLEFSH---EEFKSMIESA  218 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~---~~~~~~l~~~  218 (241)
                      +.++|||||.+++.....   +.+...+++.
T Consensus       143 ~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~  173 (194)
T d1dusa_         143 GKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             HHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             HHHhcCcCcEEEEEEeCcCCHHHHHHHHHHh
Confidence            999999999987754333   3444555543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.58  E-value=1.8e-15  Score=121.23  Aligned_cols=144  Identities=6%  Similarity=0.004  Sum_probs=101.5

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+...|+.+|||+|||+|..+             ..++.                   .+..++|+|+|+.|++.++
T Consensus        12 ~~~~l~~~~~~rvLd~GCG~G~~a-------------~~la~-------------------~G~~V~gvD~S~~~i~~a~   59 (201)
T d1pjza_          12 YWSSLNVVPGARVLVPLCGKSQDM-------------SWLSG-------------------QGYHVVGAELSEAAVERYF   59 (201)
T ss_dssp             HHHHHCCCTTCEEEETTTCCSHHH-------------HHHHH-------------------HCCEEEEEEECHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCcCCHHH-------------HHHHH-------------------cCCceEeecccHHHHHHHH
Confidence            344567789999999999999988             43333                   4678999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhcccc--HHHHHHHH
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEA  191 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~--~~~~l~~~  191 (241)
                      +++...          ............  .+   ....+.++|+..++.. ...+|+|++..+++++++  ....++++
T Consensus        60 ~~~~~~----------~~~~~~~~~~~~--~~---~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i  124 (201)
T d1pjza_          60 TERGEQ----------PHITSQGDFKVY--AA---PGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHL  124 (201)
T ss_dssp             HHHCSC----------SEEEEETTEEEE--EC---SSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             HHhccc----------cchhhhhhhhhc--cc---cccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHH
Confidence            987621          111111111111  01   3467888998887533 458999999999998764  57899999


Q ss_pred             HHhccCCcEEEEEecCH--------------HHHHHHHHHCCCceEEEE
Q psy1420         192 YRVLKPGGRFLCLEFSH--------------EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~--------------~~~~~~l~~~Gf~~~~~~  226 (241)
                      .++|||||++++..+..              +++++++ +.+|.+..++
T Consensus       125 ~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~-~~~~~i~~~~  172 (201)
T d1pjza_         125 EALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVM-SGNWEVTKVG  172 (201)
T ss_dssp             HHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTS-CSSEEEEEEE
T ss_pred             HHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHh-CCCcEEEEEE
Confidence            99999999988765433              5566655 3567654443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.1e-15  Score=123.09  Aligned_cols=155  Identities=9%  Similarity=0.004  Sum_probs=107.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .+.+.+.+.+...++.+|||+|||+|..+             ..++.                   .+..++|+|+|+.+
T Consensus        32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a-------------~~LA~-------------------~G~~V~gvD~S~~a   79 (229)
T d2bzga1          32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEM-------------KWFAD-------------------RGHSVVGVEISELG   79 (229)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHH-------------HHHHH-------------------TTCEEEEECSCHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHH-------------HHHHh-------------------CCCcEEEEeCCHHH
Confidence            34455556667778889999999999998             44444                   46789999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccc--cHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVT--RIDK  186 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~--~~~~  186 (241)
                      ++.+++.....+          ...................++++.++|+..++ ...+.||+|+...++++++  +...
T Consensus        80 i~~a~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~  149 (229)
T d2bzga1          80 IQEFFTEQNLSY----------SEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKC  149 (229)
T ss_dssp             HHHHHHHTTCCE----------EEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHH
T ss_pred             HHHHHHHhhccc----------cccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHH
Confidence            999988765110          00000000000000111246899999988875 4467899999999999874  5578


Q ss_pred             HHHHHHHhccCCcEEEEEecC--------------HHHHHHHHHHCCCceEEEEE
Q psy1420         187 ALSEAYRVLKPGGRFLCLEFS--------------HEEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~~~--------------~~~~~~~l~~~Gf~~~~~~~  227 (241)
                      .++++.++|||||++++..+.              .+++.+++.. +|.+..++.
T Consensus       150 ~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~le~  203 (229)
T d2bzga1         150 YADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCLEK  203 (229)
T ss_dssp             HHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred             HHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEEEE
Confidence            999999999999998776532              2778888854 677655543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.57  E-value=1.3e-14  Score=123.58  Aligned_cols=132  Identities=13%  Similarity=0.152  Sum_probs=100.5

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..++..++.+||.+|||+|||+|..+             ..++..++                ...+++++|.++.+++.
T Consensus        75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt-------------~~la~~v~----------------~~g~V~~vD~~e~~~~~  125 (250)
T d1yb2a1          75 SYIIMRCGLRPGMDILEVGVGSGNMS-------------SYILYALN----------------GKGTLTVVERDEDNLKK  125 (250)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHH-------------HHHHHHHT----------------TSSEEEEECSCHHHHHH
T ss_pred             HHHHHHcCCCCcCEEEEeeeeCcHHH-------------HHHHHHhC----------------CCcEEEEEECCHHHHHH
Confidence            45677788899999999999999988             44444222                45789999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~  192 (241)
                      |++++.                         +.+.. .++++...|+.+. .++..||+|++     +++++..++..+.
T Consensus       126 A~~n~~-------------------------~~~~~-~nv~~~~~Di~~~-~~~~~fD~V~l-----d~p~p~~~l~~~~  173 (250)
T d1yb2a1         126 AMDNLS-------------------------EFYDI-GNVRTSRSDIADF-ISDQMYDAVIA-----DIPDPWNHVQKIA  173 (250)
T ss_dssp             HHHHHH-------------------------TTSCC-TTEEEECSCTTTC-CCSCCEEEEEE-----CCSCGGGSHHHHH
T ss_pred             HHHHHH-------------------------HhcCC-CceEEEEeeeecc-cccceeeeeee-----cCCchHHHHHHHH
Confidence            999987                         43332 4789999998875 44678999985     5788889999999


Q ss_pred             HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEE
Q psy1420         193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~  225 (241)
                      ++|||||++++.....   ..+.+.+++.||...+.
T Consensus       174 ~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~  209 (250)
T d1yb2a1         174 SMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLET  209 (250)
T ss_dssp             HTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEE
T ss_pred             HhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEE
Confidence            9999999999887766   44555667789865443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=123.08  Aligned_cols=155  Identities=17%  Similarity=0.186  Sum_probs=99.2

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      +..++.++||+|||+|..+             ...+.                  ....+++++|+|+.|++.+++++..
T Consensus        51 g~~~g~~vLDiGcG~g~~~-------------~~~~~------------------~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQ-------------LLSAC------------------SHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGG-------------GTTGG------------------GGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEeccCCCHHH-------------HHHhc------------------ccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            3457889999999999766             11111                  1345799999999999999988762


Q ss_pred             CCCccccccccceecceeeeee---ccc---cCCCCCCeeEEecccCC------CCCCCCceeEEeeeehhhccc----c
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTR---IDK---IDIPNPRLRFLEANAEE------LPIESDSYSAYTIAFGIRNVT----R  183 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~d~~~------~~~~~~~~D~V~~~~~l~~~~----~  183 (241)
                      -+   ..+.|.....-......   ...   ............+|+..      .+.+.++||+|++.++++++.    +
T Consensus       100 ~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~  176 (263)
T d2g72a1         100 EP---GAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLAS  176 (263)
T ss_dssp             CT---TCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHH
T ss_pred             Cc---ccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHH
Confidence            21   12222111110000000   000   00000011233444432      233456899999999999874    5


Q ss_pred             HHHHHHHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCceEEEEEe
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.+++++++++|||||+|++...                  +.++++++++++||++++.+..
T Consensus       177 ~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~  239 (263)
T d2g72a1         177 FQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTY  239 (263)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence            78999999999999999988542                  3399999999999999877654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.56  E-value=1.9e-14  Score=119.36  Aligned_cols=143  Identities=12%  Similarity=0.083  Sum_probs=101.5

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .+..+|+.+|||+|||+|..+             ..++..+                 +...++++|+|+.|++.+++++
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~-------------~~la~~v-----------------~~g~V~gvDis~~~i~~a~~~a  100 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTV-------------SHLADIV-----------------DEGIIYAVEYSAKPFEKLLELV  100 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHH-------------HHHHHHT-----------------TTSEEEEECCCHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEeCCcCCHHH-------------HHHHHhc-----------------cCCeEEEEeCCHHHHHHHHHHh
Confidence            466799999999999999988             4444411                 1357999999999999999888


Q ss_pred             hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEee-eehhhccccHHHHHHHHHHhcc
Q psy1420         118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTI-AFGIRNVTRIDKALSEAYRVLK  196 (241)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~-~~~l~~~~~~~~~l~~~~~~Lk  196 (241)
                      .                         +.    +++.++..|+..++.....+|.+.+ ...+.+..+...++++++++||
T Consensus       101 ~-------------------------~~----~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~Lk  151 (209)
T d1nt2a_         101 R-------------------------ER----NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLK  151 (209)
T ss_dssp             H-------------------------HC----SSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEE
T ss_pred             h-------------------------cc----CCceEEEeeccCccccccccceEEEEEecccChhhHHHHHHHHHHHhc
Confidence            7                         32    3688888988876544443333322 2345566778899999999999


Q ss_pred             CCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec-C-ceeEEEeeec
Q psy1420         197 PGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT-F-GVVAIHSGFK  240 (241)
Q Consensus       197 pgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~-~-~~~~~~~~~~  240 (241)
                      |||++++.....            +.....+ ++||++++..++. + --+.++.++|
T Consensus       152 pgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~i~L~P~~~~H~~v~~~r  208 (209)
T d1nt2a_         152 EKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKHGSLMPYHRDHIFIHAYR  208 (209)
T ss_dssp             EEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEEEECTTTCTTEEEEEEEE
T ss_pred             cCCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEEEccCCCccCcEEEEEEe
Confidence            999999876433            2222333 4799999888774 2 3445555554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=9.1e-15  Score=124.88  Aligned_cols=125  Identities=22%  Similarity=0.215  Sum_probs=98.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+|||+|..+             ..+..                   ...+++++|+++.+++.+++++.   
T Consensus       119 ~~g~~VLDiGcGsG~l~-------------i~aa~-------------------~g~~V~gvDis~~av~~A~~na~---  163 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLA-------------IAAEK-------------------LGGKALGVDIDPMVLPQAEANAK---  163 (254)
T ss_dssp             CTTCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCGGGHHHHHHHHH---
T ss_pred             CccCEEEEcccchhHHH-------------HHHHh-------------------cCCEEEEEECChHHHHHHHHHHH---
Confidence            67889999999999887             43333                   34679999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF  201 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  201 (241)
                                            ..++.   .++.++|+... .+.++||+|+++...+   .....+..+.++|||||++
T Consensus       164 ----------------------~n~~~---~~~~~~d~~~~-~~~~~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~l  214 (254)
T d2nxca1         164 ----------------------RNGVR---PRFLEGSLEAA-LPFGPFDLLVANLYAE---LHAALAPRYREALVPGGRA  214 (254)
T ss_dssp             ----------------------HTTCC---CEEEESCHHHH-GGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------------HcCCc---eeEEecccccc-ccccccchhhhccccc---cHHHHHHHHHHhcCCCcEE
Confidence                                  66654   56788887653 3457899999875443   3567788999999999999


Q ss_pred             EEEecC---HHHHHHHHHHCCCceEEEEEecC
Q psy1420         202 LCLEFS---HEEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       202 ~i~~~~---~~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      +++.+.   .+++.+.++++||++++......
T Consensus       215 ilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~~  246 (254)
T d2nxca1         215 LLTGILKDRAPLVREAMAGAGFRPLEEAAEGE  246 (254)
T ss_dssp             EEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             EEEecchhhHHHHHHHHHHCCCEEEEEEEECC
Confidence            986543   38889999999999888776543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=2.7e-14  Score=122.59  Aligned_cols=134  Identities=10%  Similarity=0.136  Sum_probs=106.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...++..++.+||.+|||+|||+|..+             ..++..+|                +..+++++|.++.+++
T Consensus        85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt-------------~~La~~vg----------------p~G~V~~~d~~~~~~~  135 (264)
T d1i9ga_          85 AAQIVHEGDIFPGARVLEAGAGSGALT-------------LSLLRAVG----------------PAGQVISYEQRADHAE  135 (264)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEECSCHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEecCcCCcHHH-------------HHHHHhhC----------------CCcEEEEecCCHHHHH
Confidence            466788889999999999999999998             55555333                4678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      .|++++.                         .. +...+++.+.+.|+.+.++++++||+|++     ++++|..++.+
T Consensus       136 ~Ar~n~~-------------------------~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~  185 (264)
T d1i9ga_         136 HARRNVS-------------------------GCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDA  185 (264)
T ss_dssp             HHHHHHH-------------------------HHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHH
T ss_pred             HHHHhhh-------------------------hhccCCCceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHH
Confidence            9999877                         22 11125789999999988888899999985     57999999999


Q ss_pred             HHHhccCCcEEEEEecCHH---HHHHHH-HHCCCceEE
Q psy1420         191 AYRVLKPGGRFLCLEFSHE---EFKSMI-ESAGFQYVT  224 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~~~~~---~~~~~l-~~~Gf~~~~  224 (241)
                      +.++|||||++++.....+   ...+.+ .+.||..++
T Consensus       186 ~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         186 VSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             HHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCE
T ss_pred             HHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecce
Confidence            9999999999998877773   334444 355786533

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=1.2e-13  Score=115.92  Aligned_cols=144  Identities=17%  Similarity=0.035  Sum_probs=107.2

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      +.+..+||.+|||+|||+|.++             ..++..+|                ....++++|+++.+++.+.++
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t-------------~~la~~VG----------------~~G~V~aVD~s~~~l~~a~~~  117 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTA-------------SHVSDIVG----------------WEGKIFGIEFSPRVLRELVPI  117 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHH-------------HHHHHHHC----------------TTSEEEEEESCHHHHHHHHHH
T ss_pred             cccccCCCCEEEEeccCCCHHH-------------HHHHHHhC----------------CCCEEEEEeCcHHHHHHHHHH
Confidence            3456799999999999999999             66666554                467899999999999999988


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCCCceeEEeeeehhhccccHHHHHHHHHH
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTRIDKALSEAYR  193 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~  193 (241)
                      +.                         +.    +++..+..|....   +.....+|+|++  .+.+..+...+++++.+
T Consensus       118 a~-------------------------~~----~~~~~i~~d~~~~~~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~  166 (227)
T d1g8aa_         118 VE-------------------------ER----RNIVPILGDATKPEEYRALVPKVDVIFE--DVAQPTQAKILIDNAEV  166 (227)
T ss_dssp             HS-------------------------SC----TTEEEEECCTTCGGGGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHH
T ss_pred             HH-------------------------hc----CCceEEEEECCCcccccccccceEEEEE--EccccchHHHHHHHHHH
Confidence            76                         22    2456666776543   333467888875  34556677889999999


Q ss_pred             hccCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec--CceeEEEeeecC
Q psy1420         194 VLKPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT--FGVVAIHSGFKL  241 (241)
Q Consensus       194 ~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~~  241 (241)
                      .|||||+++++....            ++.+. +.+.||++.+..++.  ..-+.+++++|.
T Consensus       167 ~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~-l~~~gf~iie~i~L~p~~~~H~~vv~rK~  227 (227)
T d1g8aa_         167 YLKRGGYGMIAVKSRSIDVTKEPEQVFREVER-ELSEYFEVIERLNLEPYEKDHALFVVRKT  227 (227)
T ss_dssp             HEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHH-HHHTTSEEEEEEECTTTSSSEEEEEEECC
T ss_pred             hcccCCeEEEEEECCccCCCCCHHHHHHHHHH-HHHcCCEEEEEEcCCCCCCceEEEEEEeC
Confidence            999999999875433            33333 456799999887763  235788888873

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=6.1e-14  Score=120.43  Aligned_cols=134  Identities=14%  Similarity=0.154  Sum_probs=105.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...++..++.+|+.+|||+|||+|..+             ..++..++                +.++++++|+++.+++
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt-------------~~lA~~~~----------------~~G~V~~vD~~~~~~~  142 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMC-------------AVLARAVG----------------SSGKVFAYEKREEFAK  142 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHTT----------------TTCEEEEECCCHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHH-------------HHHHHHhC----------------CCcEEEEEeCCHHHHH
Confidence            356788889999999999999999988             44444222                4678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .|++++.                         +.++. .++.+...|+... +....+|.|+     .+++++..++.++
T Consensus       143 ~A~~~~~-------------------------~~g~~-~~v~~~~~d~~~~-~~~~~~D~V~-----~d~p~p~~~l~~~  190 (266)
T d1o54a_         143 LAESNLT-------------------------KWGLI-ERVTIKVRDISEG-FDEKDVDALF-----LDVPDPWNYIDKC  190 (266)
T ss_dssp             HHHHHHH-------------------------HTTCG-GGEEEECCCGGGC-CSCCSEEEEE-----ECCSCGGGTHHHH
T ss_pred             HHHHHHH-------------------------Hhccc-cCcEEEecccccc-ccccceeeeE-----ecCCCHHHHHHHH
Confidence            9999988                         55554 4677777775432 4456789887     4688999999999


Q ss_pred             HHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420         192 YRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE  226 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~  226 (241)
                      .++|||||++++.....   +.+.+.+++.||..++..
T Consensus       191 ~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~  228 (266)
T d1o54a_         191 WEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVW  228 (266)
T ss_dssp             HHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             HhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEE
Confidence            99999999999887776   556677888999765543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.2e-14  Score=120.42  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=82.4

Q ss_pred             CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420          41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL  120 (241)
Q Consensus        41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~  120 (241)
                      +.++.+|||+|||+|..+             ..+..    ..             ....++|+|+|+.+++.++++..  
T Consensus        82 ~~~~~~iLDiGcG~G~~~-------------~~l~~----~~-------------~~~~~~giD~s~~~~~~a~~~~~--  129 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYT-------------HAFAD----AL-------------PEITTFGLDVSKVAIKAAAKRYP--  129 (268)
T ss_dssp             CTTCCEEEEETCTTSTTH-------------HHHHH----TC-------------TTSEEEEEESCHHHHHHHHHHCT--
T ss_pred             CCCCCEEEEeCCCCcHHH-------------HHHHH----HC-------------CCCEEEEecchHhhhhhhhcccc--
Confidence            356679999999999988             43333    10             24678999999999999876643  


Q ss_pred             CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420         121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR  200 (241)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~  200 (241)
                                                    ++.+..+|+..+|+++++||+|++.+++++       ++++.|+|||||+
T Consensus       130 ------------------------------~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~  172 (268)
T d1p91a_         130 ------------------------------QVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGW  172 (268)
T ss_dssp             ------------------------------TSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEE
T ss_pred             ------------------------------cccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcE
Confidence                                          588999999999999999999999887765       5689999999999


Q ss_pred             EEEEecCHHH
Q psy1420         201 FLCLEFSHEE  210 (241)
Q Consensus       201 l~i~~~~~~~  210 (241)
                      +++.+...+.
T Consensus       173 l~~~~p~~~~  182 (268)
T d1p91a_         173 VITATPGPRH  182 (268)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEeeCCcc
Confidence            9999877633

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=5e-14  Score=121.44  Aligned_cols=116  Identities=17%  Similarity=0.151  Sum_probs=80.1

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+.+.+..+++.+|||+|||+|..+             ..++.                   .+..++|+|+|+.|++.
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~-------------~~la~-------------------~g~~v~gvD~S~~ml~~   93 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDS-------------IMLVE-------------------EGFSVTSVDASDKMLKY   93 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHH
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHH-------------HHHHH-------------------cCCeeeeccCchHHHHH
Confidence            34444555566779999999999988             44444                   35689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCC--CCeeEEecccCCCC---CCCCceeEEeeee-hhhcccc---
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN--PRLRFLEANAEELP---IESDSYSAYTIAF-GIRNVTR---  183 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~---~~~~~~D~V~~~~-~l~~~~~---  183 (241)
                      |+++..                         ..+...  ....+...++...+   ...++||+|+|.+ ++.|+++   
T Consensus        94 A~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~  148 (292)
T d1xvaa_          94 ALKERW-------------------------NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKG  148 (292)
T ss_dssp             HHHHHH-------------------------HTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTS
T ss_pred             HHHHHH-------------------------hcccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCccc
Confidence            988876                         222110  01223344433221   1246899999764 6777643   


Q ss_pred             ----HHHHHHHHHHhccCCcEEEEEe
Q psy1420         184 ----IDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       184 ----~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                          ...+|++++++|||||+|++..
T Consensus       149 ~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         149 DQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             SSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHcCcCcEEEEee
Confidence                5689999999999999998843

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=5.3e-14  Score=116.81  Aligned_cols=113  Identities=19%  Similarity=0.322  Sum_probs=90.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+++.++.+++.+|||+|||+|+.+             ..++..++                ....++++|+++.++
T Consensus        63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s-------------~~la~~~~----------------~~g~V~~id~~~~~~  113 (213)
T d1dl5a1          63 LMALFMEWVGLDKGMRVLEIGGGTGYNA-------------AVMSRVVG----------------EKGLVVSVEYSRKIC  113 (213)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTCEEEEEESCHHHH
T ss_pred             hhHHHHHhhhccccceEEEecCccchhH-------------HHHHHHhC----------------CCCcEEEeecchhhH
Confidence            4566788899999999999999999998             33333211                356899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         +.++.  ++.+..+|........++||+|++..+++++++      .
T Consensus       114 ~~a~~~~~-------------------------~~~~~--n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p~------~  160 (213)
T d1dl5a1         114 EIAKRNVE-------------------------RLGIE--NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE------T  160 (213)
T ss_dssp             HHHHHHHH-------------------------HTTCC--SEEEEESCGGGCCGGGCCEEEEEECSBBSCCCH------H
T ss_pred             HHhhhhHh-------------------------hhccc--ccccccCchHHccccccchhhhhhhccHHHhHH------H
Confidence            99999988                         55554  678888998876666678999999999888753      4


Q ss_pred             HHHhccCCcEEEEEe
Q psy1420         191 AYRVLKPGGRFLCLE  205 (241)
Q Consensus       191 ~~~~LkpgG~l~i~~  205 (241)
                      +.+.|||||+|++..
T Consensus       161 l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         161 WFTQLKEGGRVIVPI  175 (213)
T ss_dssp             HHHHEEEEEEEEEEB
T ss_pred             HHHhcCCCcEEEEEE
Confidence            678899999998743

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.38  E-value=2.4e-12  Score=106.20  Aligned_cols=122  Identities=11%  Similarity=0.091  Sum_probs=94.6

Q ss_pred             CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420          44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE  123 (241)
Q Consensus        44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~  123 (241)
                      +-.|||+|||+|..+             ..++.       ..          +...++|+|+++.++..+.+++.     
T Consensus        30 ~PlvLeIGcG~G~~~-------------~~lA~-------~~----------p~~~~iGiD~~~~~i~~a~~~~~-----   74 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFI-------------SGMAK-------QN----------PDINYIGIELFKSVIVTAVQKVK-----   74 (204)
T ss_dssp             CCEEEEECCTTSHHH-------------HHHHH-------HC----------TTSEEEEECSCHHHHHHHHHHHH-----
T ss_pred             CceEEEEEecCcHHH-------------HHHHH-------hC----------CCCcEEEeecchHHHHHHHHHHH-----
Confidence            347999999999988             44433       11          46789999999999999999888     


Q ss_pred             cccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccccH--------HHHHHHHHH
Q psy1420         124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRI--------DKALSEAYR  193 (241)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~--------~~~l~~~~~  193 (241)
                                          +.++.  ++.++++|+..+.  ++++++|.|++.+...+....        ..+++++++
T Consensus        75 --------------------~~~l~--Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r  132 (204)
T d2fcaa1          75 --------------------DSEAQ--NVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEE  132 (204)
T ss_dssp             --------------------HSCCS--SEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHH
T ss_pred             --------------------HHhcc--CchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHH
Confidence                                66665  7999999988764  667889999987766554332        489999999


Q ss_pred             hccCCcEEEEEecCH---HHHHHHHHHCCCce
Q psy1420         194 VLKPGGRFLCLEFSH---EEFKSMIESAGFQY  222 (241)
Q Consensus       194 ~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~  222 (241)
                      +|||||.|.+.+-..   +.+.+.+.+.++..
T Consensus       133 ~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~  164 (204)
T d2fcaa1         133 VMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL  164 (204)
T ss_dssp             HHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             hCCCCcEEEEEECChHHHHHHHHHHHHCCCcc
Confidence            999999998875333   56667777777653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-12  Score=114.51  Aligned_cols=143  Identities=11%  Similarity=0.157  Sum_probs=99.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...++..++.+||.+|||+|||+|..+             ..++..+|                ...+++++|+++.+++
T Consensus        87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt-------------~~LAr~vg----------------~~G~V~t~E~~~~~~~  137 (324)
T d2b25a1          87 INMILSMMDINPGDTVLEAGSGSGGMS-------------LFLSKAVG----------------SQGRVISFEVRKDHHD  137 (324)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTCEEEEEESSHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEecccccHHH-------------HHHHHHhC----------------CCcEEEEecCCHHHHH
Confidence            356778889999999999999999998             55555333                4678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      .|++++..+-              .... ........ +++.+...|+....  .++..||.|+.     .+++|..++.
T Consensus       138 ~A~~n~~~~~--------------~~~~-~~~~~~~~-~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~  196 (324)
T d2b25a1         138 LAKKNYKHWR--------------DSWK-LSHVEEWP-DNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLP  196 (324)
T ss_dssp             HHHHHHHHHH--------------HHHT-TTCSSCCC-CCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHH
T ss_pred             HHHHHHHHhh--------------hhhh-hhhhhccc-cceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHH
Confidence            9999876210              0000 00001122 57889999987653  34568999985     5678888999


Q ss_pred             HHHHhccCCcEEEEEecCHHHHHH---HHHHCC--CceEE
Q psy1420         190 EAYRVLKPGGRFLCLEFSHEEFKS---MIESAG--FQYVT  224 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~~~~~~~~~---~l~~~G--f~~~~  224 (241)
                      ++.++|||||+|++...+.+++..   .|+..+  |..++
T Consensus       197 ~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~  236 (324)
T d2b25a1         197 VFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEK  236 (324)
T ss_dssp             HHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeE
Confidence            999999999999998877755544   455444  54443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.35  E-value=8.1e-12  Score=105.61  Aligned_cols=142  Identities=15%  Similarity=0.185  Sum_probs=107.2

Q ss_pred             HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      .+.+.+... .....+|||+|||+|..+             ..++.       ..          +..+.+..|..+.  
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~-------------~~l~~-------~~----------P~l~~~v~Dlp~v--  116 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNL-------------ELIIS-------KY----------PLIKGINFDLPQV--  116 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHH-------------HHHHH-------HC----------TTCEEEEEECHHH--
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHH-------------HHHHH-------HC----------CCCeEEEecchhh--
Confidence            455666666 456679999999999988             44443       12          4567788887432  


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKAL  188 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l  188 (241)
                            ++                         ..... +++++..+|+.+. .+  ..|+|++..++|++++.  .++|
T Consensus       117 ------i~-------------------------~~~~~-~ri~~~~gd~~~~-~p--~~D~~~l~~vLh~~~de~~~~iL  161 (244)
T d1fp1d2         117 ------IE-------------------------NAPPL-SGIEHVGGDMFAS-VP--QGDAMILKAVCHNWSDEKCIEFL  161 (244)
T ss_dssp             ------HT-------------------------TCCCC-TTEEEEECCTTTC-CC--CEEEEEEESSGGGSCHHHHHHHH
T ss_pred             ------hh-------------------------ccCCC-CCeEEecCCcccc-cc--cceEEEEehhhhhCCHHHHHHHH
Confidence                  12                         11112 5799999998753 33  35999999999999875  4889


Q ss_pred             HHHHHhccCCcEEEEEecCH-------------------------------HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH-------------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHS  237 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~-------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  237 (241)
                      +++++.|+|||++++.+...                               ++|+++++++||+.+++.....+..+++-
T Consensus       162 ~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE  241 (244)
T d1fp1d2         162 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME  241 (244)
T ss_dssp             HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEE
T ss_pred             HHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEE
Confidence            99999999999999987421                               89999999999999999877778888888


Q ss_pred             eec
Q psy1420         238 GFK  240 (241)
Q Consensus       238 ~~~  240 (241)
                      ++|
T Consensus       242 ~~K  244 (244)
T d1fp1d2         242 FYK  244 (244)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            776

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=109.71  Aligned_cols=115  Identities=20%  Similarity=0.184  Sum_probs=87.2

Q ss_pred             HHHHHHhhc--CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          31 WKDIFIDRL--GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        31 ~~~~~~~~l--~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ....+++.+  ..+|+.+|||+|||+|+.+             .-++.    +..            ....++++|.++.
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~t-------------a~la~----l~~------------~~g~V~~ie~~~~  112 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILT-------------ACFAR----MVG------------CTGKVIGIDHIKE  112 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHH-------------HHHHH----HHC------------TTCEEEEEESCHH
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHH-------------HHHHH----HhC------------CCceEEEEcCCHH
Confidence            345677776  5689999999999999988             22222    111            3568999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCC---CCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP---NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID  185 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~  185 (241)
                      +++.+++++.                         +.+..   ..++.+..+|....+.+..+||+|++..+++++++  
T Consensus       113 l~~~a~~~l~-------------------------~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip~--  165 (224)
T d1i1na_         113 LVDDSVNNVR-------------------------KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQ--  165 (224)
T ss_dssp             HHHHHHHHHH-------------------------HHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH--
T ss_pred             HHHHHHHhcc-------------------------ccCcccccccceEEEEeecccccchhhhhhhhhhhcchhhcCH--
Confidence            9999998876                         33221   13678889998877666779999999988887653  


Q ss_pred             HHHHHHHHhccCCcEEEEEe
Q psy1420         186 KALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       186 ~~l~~~~~~LkpgG~l~i~~  205 (241)
                          .+.+.|||||+|++..
T Consensus       166 ----~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         166 ----ALIDQLKPGGRLILPV  181 (224)
T ss_dssp             ----HHHHTEEEEEEEEEEE
T ss_pred             ----HHHhhcCCCcEEEEEE
Confidence                4778999999998853

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.5e-13  Score=115.82  Aligned_cols=125  Identities=14%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      ...+++.++.+++.+|||+|||+|..+             ..++.    .             .....++|+|+++.+++
T Consensus       140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~-------------~~~a~----~-------------~~~~~~~Gid~s~~~~~  189 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLGSGVGQVV-------------LQVAA----A-------------TNCKHHYGVEKADIPAK  189 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEETCTTSHHH-------------HHHHH----H-------------CCCSEEEEEECSHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEcCCCCCHHH-------------HHHHH----H-------------hCCCeEEEEeCCHHHHH
Confidence            466778888899999999999999988             44433    0             12457999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCce--eEEeeeehhhccccHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSY--SAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--D~V~~~~~l~~~~~~~~~l~  189 (241)
                      .|+......                  -.+....+....+++++++|+.+.++.+..+  |+|++ ..+.+.+++..+|.
T Consensus       190 ~a~~~~~~~------------------~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~  250 (328)
T d1nw3a_         190 YAETMDREF------------------RKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLK  250 (328)
T ss_dssp             HHHHHHHHH------------------HHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHH
T ss_pred             HHHHHHHHH------------------HHHhhhccccCCceEEEECcccccccccccCcceEEEE-cceecchHHHHHHH
Confidence            988765410                  0000122344457999999999887655444  55665 45567788999999


Q ss_pred             HHHHhccCCcEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLE  205 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~  205 (241)
                      ++.+.|||||++++.+
T Consensus       251 e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         251 ERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHTTCCTTCEEEESS
T ss_pred             HHHHhCCCCcEEEEec
Confidence            9999999999998754

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.3e-11  Score=103.46  Aligned_cols=148  Identities=16%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+..++... ..+.+|||+|||+|..+             ..++.       .          .+...++++|+|+.+++
T Consensus        98 v~~~l~~~~-~~~~~vlDlGtGSG~I~-------------i~la~-------~----------~p~~~v~avDis~~Al~  146 (274)
T d2b3ta1          98 VEQALARLP-EQPCRILDLGTGTGAIA-------------LALAS-------E----------RPDCEIIAVDRMPDAVS  146 (274)
T ss_dssp             HHHHHHHSC-SSCCEEEEETCTTSHHH-------------HHHHH-------H----------CTTSEEEEECSSHHHHH
T ss_pred             hhhHhhhhc-ccccceeeeehhhhHHH-------------HHHHh-------h----------CCcceeeeccchhHHHh
Confidence            344444433 45678999999999988             33322       1          14678999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh-------------h
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG-------------I  178 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~-------------l  178 (241)
                      .|++++.                         +.++.  ++.++++|..+. .+..+||+|+++--             +
T Consensus       147 ~A~~Na~-------------------------~~~~~--~v~~~~~d~~~~-~~~~~fDlIvsNPPYi~~~~~~~~~~v~  198 (274)
T d2b3ta1         147 LAQRNAQ-------------------------HLAIK--NIHILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDV  198 (274)
T ss_dssp             HHHHHHH-------------------------HHTCC--SEEEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGG
T ss_pred             HHHHHHH-------------------------HhCcc--cceeeecccccc-cCCCceeEEEecchhhhhhhhccccccc
Confidence            9999998                         66665  689999998763 44578999998721             1


Q ss_pred             hcc------------ccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEeee
Q psy1420         179 RNV------------TRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSGF  239 (241)
Q Consensus       179 ~~~------------~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~  239 (241)
                      .+-            ....+.+..+.++|+|||.+++ +.+.   +.+.++++++||..+++..=..|.-.+++|+
T Consensus       199 ~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         199 RFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             GSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             ccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECchHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence            111            1235788999999999999987 4333   8899999999997665444445655555553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.26  E-value=3.9e-11  Score=98.73  Aligned_cols=122  Identities=14%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420          45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES  124 (241)
Q Consensus        45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~  124 (241)
                      -.|||+|||+|..+             ..++.       ..          +...++|+|+++.++..+.+++.      
T Consensus        33 plvLdIGcG~G~~~-------------~~lA~-------~~----------p~~~~iGid~~~~~v~~a~~~~~------   76 (204)
T d1yzha1          33 PIHVEVGSGKGAFV-------------SGMAK-------QN----------PDINYIGIDIQKSVLSYALDKVL------   76 (204)
T ss_dssp             CEEEEESCTTSHHH-------------HHHHH-------HC----------TTSEEEEEESCHHHHHHHHHHHH------
T ss_pred             CeEEEEeccCCHHH-------------HHHHH-------HC----------CCCceEEEeccHHHHHHHHHhhh------
Confidence            37999999999987             44433       11          46789999999999999988888      


Q ss_pred             ccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcccc--------HHHHHHHHHHh
Q psy1420         125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRV  194 (241)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~--------~~~~l~~~~~~  194 (241)
                                         +.+++  ++.+..+|+..+.  ++..++|.|++.+.-.+...        -..+|+.+.++
T Consensus        77 -------------------~~~l~--Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~  135 (204)
T d1yzha1          77 -------------------EVGVP--NIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRI  135 (204)
T ss_dssp             -------------------HHCCS--SEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHH
T ss_pred             -------------------hhccc--cceeeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHh
Confidence                               66665  7999999988764  56788999987665433221        16899999999


Q ss_pred             ccCCcEEEEEecCH---HHHHHHHHHCCCceE
Q psy1420         195 LKPGGRFLCLEFSH---EEFKSMIESAGFQYV  223 (241)
Q Consensus       195 LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~  223 (241)
                      |||||.|.+.+-..   +.+.+.+.+.++...
T Consensus       136 LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~  167 (204)
T d1yzha1         136 LPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  167 (204)
T ss_dssp             SCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence            99999998866333   455566667776543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.24  E-value=1.2e-11  Score=103.36  Aligned_cols=107  Identities=13%  Similarity=0.161  Sum_probs=83.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+++.++.+++.+|||+|||+|+.+             ..+..                   ...+++++|+++.+.
T Consensus        58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~t-------------a~La~-------------------l~~~V~aiE~~~~~~  105 (224)
T d1vbfa_          58 LGIFMLDELDLHKGQKVLEIGTGIGYYT-------------ALIAE-------------------IVDKVVSVEINEKMY  105 (224)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEEESCHHHH
T ss_pred             hHHHHHHHhhhcccceEEEecCCCCHHH-------------HHHHH-------------------HhcccccccccHHHH
Confidence            3456788889999999999999999988             32222                   345799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.++++..                         +.    .++.++.+|......+..+||+|++..++.++++      .
T Consensus       106 ~~A~~~~~-------------------------~~----~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~------~  150 (224)
T d1vbfa_         106 NYASKLLS-------------------------YY----NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC------K  150 (224)
T ss_dssp             HHHHHHHT-------------------------TC----SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCH------H
T ss_pred             HHHHHHHh-------------------------cc----cccccccCchhhcchhhhhHHHHHhhcchhhhhH------H
Confidence            99998766                         21    3788999997664444578999999888776653      4


Q ss_pred             HHHhccCCcEEEEE
Q psy1420         191 AYRVLKPGGRFLCL  204 (241)
Q Consensus       191 ~~~~LkpgG~l~i~  204 (241)
                      +.+.|||||+|++.
T Consensus       151 l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         151 PYEQLKEGGIMILP  164 (224)
T ss_dssp             HHHTEEEEEEEEEE
T ss_pred             HHHhcCCCCEEEEE
Confidence            56789999999874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=6.1e-12  Score=110.22  Aligned_cols=113  Identities=15%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+.+.....++.+|||+|||+|..+             ..++.                  ....+++++|.++ +.+
T Consensus        27 ~~aI~~~~~~~~~~~VLDlGcGtG~ls-------------~~aa~------------------~Ga~~V~avd~s~-~~~   74 (328)
T d1g6q1_          27 RNAIIQNKDLFKDKIVLDVGCGTGILS-------------MFAAK------------------HGAKHVIGVDMSS-IIE   74 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHH-------------HHHHH------------------TCCSEEEEEESST-HHH
T ss_pred             HHHHHhccccCCcCEEEEeCCCCCHHH-------------HHHHH------------------hCCCEEEEEeCCH-HHH
Confidence            333443333356789999999999887             32222                  1235799999986 567


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh---ccccHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR---NVTRIDKAL  188 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~---~~~~~~~~l  188 (241)
                      .+++...                         +.+.. .++.++++++.+++.++.++|+|++....+   +......++
T Consensus        75 ~a~~~~~-------------------------~~~~~-~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~  128 (328)
T d1g6q1_          75 MAKELVE-------------------------LNGFS-DKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVL  128 (328)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHH
T ss_pred             HHHHHHH-------------------------HhCcc-ccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHH
Confidence            7777766                         55555 579999999999998888999999865544   445678899


Q ss_pred             HHHHHhccCCcEEE
Q psy1420         189 SEAYRVLKPGGRFL  202 (241)
Q Consensus       189 ~~~~~~LkpgG~l~  202 (241)
                      ....++|||||+++
T Consensus       129 ~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         129 YARDHYLVEGGLIF  142 (328)
T ss_dssp             HHHHHHEEEEEEEE
T ss_pred             HHHHhccCCCeEEE
Confidence            99999999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=2.3e-11  Score=105.94  Aligned_cols=103  Identities=14%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+|||+|.++             ..++.                  ....+++++|.++.+ ..+.+.+.   
T Consensus        32 ~~~~~VLDiGcG~G~ls-------------~~aa~------------------~Ga~~V~avd~s~~~-~~a~~~~~---   76 (316)
T d1oria_          32 FKDKVVLDVGSGTGILC-------------MFAAK------------------AGARKVIGIECSSIS-DYAVKIVK---   76 (316)
T ss_dssp             HTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEECSTTH-HHHHHHHH---
T ss_pred             CCcCEEEEEecCCcHHH-------------HHHHH------------------hCCCEEEEEcCcHHH-hhhhhHHH---
Confidence            46789999999999887             32222                  123479999999865 55555555   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc---cccHHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN---VTRIDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~---~~~~~~~l~~~~~~Lkpg  198 (241)
                                            +.++. +++.++++++.+++.+.+++|+|++....+.   -..++.++..+.++||||
T Consensus        77 ----------------------~n~~~-~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~  133 (316)
T d1oria_          77 ----------------------ANKLD-HVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD  133 (316)
T ss_dssp             ----------------------HTTCT-TTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred             ----------------------HhCCc-cccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC
Confidence                                  45555 6799999999999888889999988655443   346789999999999999


Q ss_pred             cEEE
Q psy1420         199 GRFL  202 (241)
Q Consensus       199 G~l~  202 (241)
                      |.++
T Consensus       134 G~ii  137 (316)
T d1oria_         134 GLIF  137 (316)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9987

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.17  E-value=4.2e-11  Score=99.37  Aligned_cols=110  Identities=14%  Similarity=0.191  Sum_probs=87.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+++.++.+++.+|||+|||+|+.+             .-+..    +              ....++++|.++.+.
T Consensus        66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~t-------------aila~----l--------------~g~~V~~ie~~~~l~  114 (215)
T d1jg1a_          66 MVAIMLEIANLKPGMNILEVGTGSGWNA-------------ALISE----I--------------VKTDVYTIERIPELV  114 (215)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHH-------------HHHHH----H--------------HCSCEEEEESCHHHH
T ss_pred             hHHHHHHhhccCccceEEEecCCCChhH-------------HHHHH----h--------------hCceeEEEeccHHHH
Confidence            3567788889999999999999999998             22222    2              134699999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      +.+++++.                         +.++.  ++.++++|.........+||+|++..++..+++.      
T Consensus       115 ~~a~~~l~-------------------------~~g~~--nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~~------  161 (215)
T d1jg1a_         115 EFAKRNLE-------------------------RAGVK--NVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEP------  161 (215)
T ss_dssp             HHHHHHHH-------------------------HTTCC--SEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHH------
T ss_pred             HHHHHHHH-------------------------HcCCc--eeEEEECccccCCcccCcceeEEeecccccCCHH------
Confidence            99999998                         55655  7999999988765556789999998888776542      


Q ss_pred             HHHhccCCcEEEEE
Q psy1420         191 AYRVLKPGGRFLCL  204 (241)
Q Consensus       191 ~~~~LkpgG~l~i~  204 (241)
                      +.+.|+|||+|++.
T Consensus       162 l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         162 LIEQLKIGGKLIIP  175 (215)
T ss_dssp             HHHTEEEEEEEEEE
T ss_pred             HHHhcCCCCEEEEE
Confidence            56679999999874

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.14  E-value=2.8e-10  Score=95.88  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=96.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      ....+|+|||||+|..+             ..++.       ..          +..+.+..|..+.        ++   
T Consensus        79 ~~~~~vvDvGGG~G~~~-------------~~l~~-------~~----------P~l~~~v~Dlp~v--------i~---  117 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTA-------------KIICE-------TF----------PKLKCIVFDRPQV--------VE---  117 (244)
T ss_dssp             TTCSEEEEETCTTSHHH-------------HHHHH-------HC----------TTCEEEEEECHHH--------HT---
T ss_pred             cCceEEEEecCCccHHH-------------HHHHH-------hC----------CCCeEEEecCHHH--------HH---
Confidence            34468999999999988             44443       11          4567888897432        22   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCC-
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPG-  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~Lkpg-  198 (241)
                                            ..+.. +++++..+|+.+. .+  .+|++++..++|++++.+  ++|+++++.|+|| 
T Consensus       118 ----------------------~~~~~-~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg  171 (244)
T d1fp2a2         118 ----------------------NLSGS-NNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDG  171 (244)
T ss_dssp             ----------------------TCCCB-TTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGG
T ss_pred             ----------------------hCccc-CceEEEecCcccC-CC--CCcEEEEEeecccCChHHHHHHHHHHHHHcCccc
Confidence                                  12222 5899999998864 22  579999999999998774  8999999999998 


Q ss_pred             --cEEEEEecCH------------------------------HHHHHHHHHCCCceEEEEEecCceeEEEeee
Q psy1420         199 --GRFLCLEFSH------------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGF  239 (241)
Q Consensus       199 --G~l~i~~~~~------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~  239 (241)
                        |++++.+...                              ++|+++++++||+.+++..... ...++-++
T Consensus       172 ~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~~~~-~~svIE~~  243 (244)
T d1fp2a2         172 KRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTG-FLSLIEIY  243 (244)
T ss_dssp             CCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEEET-TEEEEEEE
T ss_pred             CCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEECCC-CeEEEEEe
Confidence              7788776311                              8999999999999999987764 44555443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.3e-11  Score=101.62  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=83.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+.+.....++.+|||+|||+|..+             ..++.                  ....+++++|.++.+.
T Consensus        23 y~~ai~~~~~~~~~~~VLDiGcG~G~ls-------------l~aa~------------------~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          23 YRDFIYQNPHIFKDKVVLDVGCGTGILS-------------MFAAK------------------AGAKKVLGVDQSEILY   71 (311)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEESSTHHH
T ss_pred             HHHHHHhccccCCcCEEEEECCCCCHHH-------------HHHHH------------------cCCCEEEEEeCHHHHH
Confidence            3444555555567889999999999887             32322                  1235799999999887


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc---ccHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---TRIDKA  187 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~---~~~~~~  187 (241)
                      ...+ ...                         +.+.. +++.++++++.+++.+.++||+|++....+..   ..+...
T Consensus        72 ~a~~-~~~-------------------------~~~~~-~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~  124 (311)
T d2fyta1          72 QAMD-IIR-------------------------LNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSV  124 (311)
T ss_dssp             HHHH-HHH-------------------------HTTCT-TTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHH
T ss_pred             HHHH-HHH-------------------------HhCCC-ccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHH
Confidence            5444 433                         33444 57999999999998888899999986555433   245677


Q ss_pred             HHHHHHhccCCcEEE
Q psy1420         188 LSEAYRVLKPGGRFL  202 (241)
Q Consensus       188 l~~~~~~LkpgG~l~  202 (241)
                      +....+.|||||+++
T Consensus       125 ~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         125 LYAKNKYLAKGGSVY  139 (311)
T ss_dssp             HHHHHHHEEEEEEEE
T ss_pred             HHHHHhcCCCCcEEe
Confidence            777889999999987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.09  E-value=8.1e-10  Score=92.73  Aligned_cols=134  Identities=19%  Similarity=0.226  Sum_probs=96.3

Q ss_pred             HHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          32 KDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        32 ~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ...++..... .+..+|+|||||+|..+             ..++.       ..          +..+.+..|..+.. 
T Consensus        69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~-------------~~l~~-------~~----------P~l~~~v~Dlp~vi-  117 (243)
T d1kyza2          69 MKKILETYTGFEGLKSLVDVGGGTGAVI-------------NTIVS-------KY----------PTIKGINFDLPHVI-  117 (243)
T ss_dssp             HHHHHHHCCTTSSCSEEEEETCTTSHHH-------------HHHHH-------HC----------TTSEEEEEECTTTT-
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHH-------------HHHHH-------HC----------CCCeEEEcccHHhh-
Confidence            3455555554 44568999999999988             55544       11          45678888986531 


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKAL  188 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l  188 (241)
                             +                         ..... +++++...|+.+. .+.  .|.++...++|.+++  ...+|
T Consensus       118 -------~-------------------------~~~~~-~r~~~~~~d~~~~-~P~--ad~~~l~~vlh~~~d~~~~~iL  161 (243)
T d1kyza2         118 -------E-------------------------DAPSY-PGVEHVGGDMFVS-IPK--ADAVFMKWICHDWSDEHCLKFL  161 (243)
T ss_dssp             -------T-------------------------TCCCC-TTEEEEECCTTTC-CCC--CSCEECSSSSTTSCHHHHHHHH
T ss_pred             -------h-------------------------hcccC-CceEEeccccccc-CCC--cceEEEEEEeecCCHHHHHHHH
Confidence                   1                         11111 5789999998653 332  477888899998865  46899


Q ss_pred             HHHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEEecCce
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLTFGV  232 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~  232 (241)
                      +++++.|+|||++++.+...                                ++++++++++||+.+++....++.
T Consensus       162 ~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~  237 (243)
T d1kyza2         162 KNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNT  237 (243)
T ss_dssp             HHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTE
T ss_pred             HHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence            99999999999999876321                                799999999999999987664443

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=2.7e-10  Score=92.84  Aligned_cols=130  Identities=18%  Similarity=0.313  Sum_probs=100.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+.+.++..++|++||+|..+             ..++..                 .+...++++|.++.++
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs-------------~~il~~-----------------~~~~~vi~~D~d~~~l   60 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHS-------------RAILEH-----------------CPGCRIIGIDVDSEVL   60 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHH-------------HHHHHH-----------------CTTCEEEEEESCHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHH-------------HHHHhc-----------------CCCCeEEEeechHHHH
Confidence            4567788889999999999999999998             444441                 1256899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeehh-------
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFGI-------  178 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~l-------  178 (241)
                      +.++++..                         +.+   .++.++++++.++.     ...+++|.|+...++       
T Consensus        61 ~~a~~~l~-------------------------~~~---~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~  112 (192)
T d1m6ya2          61 RIAEEKLK-------------------------EFS---DRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKG  112 (192)
T ss_dssp             HHHHHHTG-------------------------GGT---TTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHT
T ss_pred             HHHHHhhc-------------------------ccc---ccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhh
Confidence            99999876                         322   46888999887652     335789999987776       


Q ss_pred             --hccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHC
Q psy1420         179 --RNVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESA  218 (241)
Q Consensus       179 --~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~  218 (241)
                        +.+....+.|..+.++|+|||+++++++..   +.+++.+++.
T Consensus       113 ~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~  157 (192)
T d1m6ya2         113 ENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNS  157 (192)
T ss_dssp             SHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHC
T ss_pred             hhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhc
Confidence              344556789999999999999999999887   3345555543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.07  E-value=1.2e-10  Score=97.10  Aligned_cols=122  Identities=17%  Similarity=0.172  Sum_probs=84.8

Q ss_pred             HHHHHHhhc--CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          31 WKDIFIDRL--GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        31 ~~~~~~~~l--~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ....+++.+  +.+++.+|||+|||+|+.+             .-+..    ++....-       ....+++++|.++.
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~t-------------a~la~----l~g~~g~-------~~~~~V~~iE~~~~  121 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLT-------------ACFYR----YIKAKGV-------DADTRIVGIEHQAE  121 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHH-------------HHHHH----HHHHSCC-------CTTCEEEEEESCHH
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHH-------------HHHHH----HhhhccC-------CcccEEEEEecCHH
Confidence            345667766  5689999999999999998             22222    2221100       02347999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      +.+.++++....                    .....+.  .++.+..+|......+..+||+|++..++..+++     
T Consensus       122 l~~~a~~~l~~~--------------------~~~~~~~--~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~-----  174 (223)
T d1r18a_         122 LVRRSKANLNTD--------------------DRSMLDS--GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT-----  174 (223)
T ss_dssp             HHHHHHHHHHHH--------------------HHHHHHH--TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH-----
T ss_pred             HHHHHHHhhhhc--------------------chhhcCc--cEEEEEecccccccccccceeeEEEEeechhchH-----
Confidence            999998875410                    0001111  3688999998876555678999999988876653     


Q ss_pred             HHHHHhccCCcEEEEE
Q psy1420         189 SEAYRVLKPGGRFLCL  204 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~  204 (241)
                       .+.+.|||||++++.
T Consensus       175 -~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         175 -ELINQLASGGRLIVP  189 (223)
T ss_dssp             -HHHHTEEEEEEEEEE
T ss_pred             -HHHHhcCCCcEEEEE
Confidence             367899999999874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=6.5e-10  Score=94.48  Aligned_cols=128  Identities=14%  Similarity=0.192  Sum_probs=96.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      +..+.+.+  +++.+|||+|||+|.++             ..++.                  ....+++++|+++.+++
T Consensus        98 r~ri~~~~--~~g~~VlD~~aG~G~~~-------------l~~a~------------------~~~~~V~avd~n~~a~~  144 (260)
T d2frna1          98 RVRMAKVA--KPDELVVDMFAGIGHLS-------------LPIAV------------------YGKAKVIAIEKDPYTFK  144 (260)
T ss_dssp             HHHHHHHC--CTTCEEEETTCTTTTTH-------------HHHHH------------------HTCCEEEEECCCHHHHH
T ss_pred             HHHHHhhc--CCccEEEECcceEcHHH-------------HHHHH------------------hCCcEEEEecCCHHHHH
Confidence            34454443  57889999999999998             44333                  12458999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA  191 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~  191 (241)
                      .+++++.                         ..++. ++++++++|+...+. .+.+|.|++...    +....++..+
T Consensus       145 ~~~~N~~-------------------------~n~l~-~~v~~~~~D~~~~~~-~~~~D~Ii~~~p----~~~~~~l~~a  193 (260)
T d2frna1         145 FLVENIH-------------------------LNKVE-DRMSAYNMDNRDFPG-ENIADRILMGYV----VRTHEFIPKA  193 (260)
T ss_dssp             HHHHHHH-------------------------HTTCT-TTEEEECSCTTTCCC-CSCEEEEEECCC----SSGGGGHHHH
T ss_pred             HHHHHHH-------------------------HhCCC-ceEEEEEcchHHhcc-CCCCCEEEECCC----CchHHHHHHH
Confidence            9999998                         66776 579999999988754 468999986432    2334577788


Q ss_pred             HHhccCCcEEEEEecCH---------HHHHHHHHHCCCceE
Q psy1420         192 YRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYV  223 (241)
Q Consensus       192 ~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~  223 (241)
                      .+.|+|||.+.+..+.+         +.+.++.+..|+.+.
T Consensus       194 ~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~  234 (260)
T d2frna1         194 LSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  234 (260)
T ss_dssp             HHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             HhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceE
Confidence            89999999986644322         567788889999764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=8.8e-11  Score=105.89  Aligned_cols=126  Identities=11%  Similarity=0.066  Sum_probs=83.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ....+++.++.+++.+|||+|||+|..+             ..++.    .             .....++|+|+++.++
T Consensus       204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~v-------------l~aA~----~-------------~g~~~v~GIDiS~~~i  253 (406)
T d1u2za_         204 FLSDVYQQCQLKKGDTFMDLGSGVGNCV-------------VQAAL----E-------------CGCALSFGCEIMDDAS  253 (406)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHH-------------HHHHH----H-------------HCCSEEEEEECCHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCCcHHH-------------HHHHH----H-------------cCCCeEEEEeCCHHHH
Confidence            4567888889999999999999999988             44443    1             1234799999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeE-EecccCCCCCC---CCceeEEeeeehhhccccHHH
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRF-LEANAEELPIE---SDSYSAYTIAFGIRNVTRIDK  186 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~~  186 (241)
                      +.|++++...              +.+..    ..+.......+ ...++...+..   -...|+|+++. ..+.+++..
T Consensus       254 ~~Ak~~~~e~--------------~~~~~----~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~  314 (406)
T d1u2za_         254 DLTILQYEEL--------------KKRCK----LYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNK  314 (406)
T ss_dssp             HHHHHHHHHH--------------HHHHH----HTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHH
T ss_pred             HHHHHHHHHH--------------hhhhh----hhccccccceeeeeechhhccccccccccceEEEEec-ccCchHHHH
Confidence            9999887610              00000    00111112222 23433332211   12467777654 456788899


Q ss_pred             HHHHHHHhccCCcEEEEEe
Q psy1420         187 ALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       187 ~l~~~~~~LkpgG~l~i~~  205 (241)
                      .|.++.+.|||||++++.+
T Consensus       315 ~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         315 KVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHHHHHTTCCTTCEEEESS
T ss_pred             HHHHHHHhcCCCcEEEEec
Confidence            9999999999999998754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=4.5e-10  Score=98.08  Aligned_cols=127  Identities=23%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||++||+|..+             ..++.                   ...+++++|.|+.+++.+++++.   
T Consensus       144 ~~g~rVLDl~~gtG~~s-------------~~~a~-------------------g~~~V~~vD~s~~al~~a~~n~~---  188 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFA-------------LHLAL-------------------GFREVVAVDSSAEALRRAEENAR---  188 (318)
T ss_dssp             CCEEEEEEETCTTTHHH-------------HHHHH-------------------HEEEEEEEESCHHHHHHHHHHHH---
T ss_pred             hCCCeeeccCCCCcHHH-------------HHHHh-------------------cCCcEEeecchHHHHHHHHHHHH---
Confidence            46789999999999988             44433                   34579999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehh---------hccccHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGI---------RNVTRIDKAL  188 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l---------~~~~~~~~~l  188 (241)
                                            ..++.  ++++++.|+.+.    +...++||+|++.---         ....+...++
T Consensus       189 ----------------------~ngl~--~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~  244 (318)
T d1wxxa2         189 ----------------------LNGLG--NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVN  244 (318)
T ss_dssp             ----------------------HTTCT--TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHH
T ss_pred             ----------------------HcCCC--CcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHH
Confidence                                  66765  688999997653    3345789999974211         1233456788


Q ss_pred             HHHHHhccCCcEEEEEecCH----HHH----HHHHHHCCCceEEEEE
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH----EEF----KSMIESAGFQYVTYEN  227 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~----~~~----~~~l~~~Gf~~~~~~~  227 (241)
                      ..+.++|+|||.|++.+.+.    +++    .+.+..+|-++.-+..
T Consensus       245 ~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~~  291 (318)
T d1wxxa2         245 LRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEK  291 (318)
T ss_dssp             HHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence            89999999999999887654    444    4455667765544443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=7.4e-10  Score=96.81  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=86.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||++||+|..+             ..++.                  ....+++++|+++.+++.+++++.   
T Consensus       144 ~~g~~VLDl~~g~G~~s-------------i~~a~------------------~ga~~V~~vD~s~~al~~a~~N~~---  189 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFA-------------IHAAI------------------AGADEVIGIDKSPRAIETAKENAK---  189 (324)
T ss_dssp             CTTCEEEETTCTTTHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH---
T ss_pred             CCCCeeecccCcccchh-------------hhhhh------------------cCCcEEEeecCCHHHHHHHHHHHH---
Confidence            56889999999999988             43332                  023479999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehh---h------ccccHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGI---R------NVTRIDKAL  188 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l---~------~~~~~~~~l  188 (241)
                                            ..++. .+++++++|+.+.    +....+||+|++.-..   +      ...+..+.+
T Consensus       190 ----------------------~ngl~-~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~  246 (324)
T d2as0a2         190 ----------------------LNGVE-DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVN  246 (324)
T ss_dssp             ----------------------HTTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHH
T ss_pred             ----------------------HcCCC-ccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHH
Confidence                                  66775 4788999997642    2345789999974221   1      122346688


Q ss_pred             HHHHHhccCCcEEEEEecCH----HHHHHHHH
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH----EEFKSMIE  216 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~----~~~~~~l~  216 (241)
                      ..+.++|+|||+|++++.++    +++.+++.
T Consensus       247 ~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~  278 (324)
T d2as0a2         247 FAGLNLVKDGGILVTCSCSQHVDLQMFKDMII  278 (324)
T ss_dssp             HHHHTTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHcCCCcEEEEEeCCccCCHHHHHHHHH
Confidence            88999999999999887665    55555443

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.92  E-value=1.1e-09  Score=88.94  Aligned_cols=136  Identities=15%  Similarity=0.109  Sum_probs=81.4

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|+++|||+|..+           |+..+  .+.+.....         ....+++++|+++.+++.|+...... 
T Consensus        23 ~~~lrIwsaGCstGeE~-----------YSlA~--~l~e~~~~~---------~~~~~I~atDi~~~~l~~A~~g~y~~-   79 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEP-----------YSIAI--TLADALGMA---------PGRWKVFASDIDTEVLEKARSGIYRL-   79 (193)
T ss_dssp             CSCEEEEESCCTTTHHH-----------HHHHH--HHHHHHCSC---------TTSEEEEEEESCHHHHHHHHHTEEEG-
T ss_pred             CCCeEEEEeCCCCchhH-----------HHHHH--HHHHhhhhc---------CCceEEEeecCChHHhhHhhcCcccH-
Confidence            45679999999999977           33332  222211111         12357999999999999998754411 


Q ss_pred             Cccccccccceecceeeeeecc---------ccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccH--HHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRID---------KIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRI--DKALS  189 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~--~~~l~  189 (241)
                         .+.+..+-...-+...+..         +..+. ..+.+...+....+ .+.++||+|+|.+++.++++.  .++++
T Consensus        80 ---~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~  155 (193)
T d1af7a2          80 ---SELKTLSPQQLQRYFMRGTGPHEGLVRVRQELA-NYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILR  155 (193)
T ss_dssp             ---GGGTTSCHHHHHHHEEECCTTSCSEEEECHHHH-TTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHH
T ss_pred             ---HHHhhhhHHHHhhceeecCCCccceeehHHHHH-HHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHH
Confidence               1100000000000010000         00000 23555555555432 335789999999999988766  68999


Q ss_pred             HHHHhccCCcEEEEE
Q psy1420         190 EAYRVLKPGGRFLCL  204 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~  204 (241)
                      .+++.|+|||+|++-
T Consensus       156 ~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         156 RFVPLLKPDGLLFAG  170 (193)
T ss_dssp             HHGGGEEEEEEEEEC
T ss_pred             HHHHHhCCCcEEEEe
Confidence            999999999998874

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.83  E-value=6.2e-09  Score=90.71  Aligned_cols=129  Identities=11%  Similarity=0.154  Sum_probs=92.3

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+.||+|.++             ..++.                  .....++++|.++.+++.+++++.   
T Consensus       143 ~~g~~VLdlf~~~G~~s-------------l~aa~------------------~ga~~V~~vD~s~~a~~~a~~N~~---  188 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFS-------------VAAAM------------------GGAMATTSVDLAKRSRALSLAHFE---  188 (317)
T ss_dssp             TBTCEEEEETCTTTHHH-------------HHHHH------------------TTBSEEEEEESCTTHHHHHHHHHH---
T ss_pred             hCCCceeecCCCCcHHH-------------HHHHh------------------CCCceEEEecCCHHHHHHHHHHHH---
Confidence            46789999999999988             33322                  023469999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeee---eh-----h-hccccHHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIA---FG-----I-RNVTRIDKAL  188 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~---~~-----l-~~~~~~~~~l  188 (241)
                                            ..++...++++++.|+...    .....+||+|++.   ++     + ....+..+.+
T Consensus       189 ----------------------~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~  246 (317)
T d2b78a2         189 ----------------------ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLI  246 (317)
T ss_dssp             ----------------------HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHH
T ss_pred             ----------------------HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHH
Confidence                                  6677656789999997542    2235689999974   11     1 1223456788


Q ss_pred             HHHHHhccCCcEEEEEecCH----HHHHHH----HHHCCCceEEEE
Q psy1420         189 SEAYRVLKPGGRFLCLEFSH----EEFKSM----IESAGFQYVTYE  226 (241)
Q Consensus       189 ~~~~~~LkpgG~l~i~~~~~----~~~~~~----l~~~Gf~~~~~~  226 (241)
                      ..+.++|+|||.|+++..+.    +++.++    +..+|.++....
T Consensus       247 ~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~~  292 (317)
T d2b78a2         247 RQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQ  292 (317)
T ss_dssp             HHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             HHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            99999999999999887654    555444    445566555443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.74  E-value=7.7e-09  Score=80.51  Aligned_cols=114  Identities=13%  Similarity=0.177  Sum_probs=80.0

Q ss_pred             HHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          33 DIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        33 ~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      +.+...+.. -++.+|||++||+|..+             ...+.       +           ...+++++|.++.+++
T Consensus         3 e~~fn~l~~~~~g~~vlDl~~GtG~~~-------------iea~~-------r-----------ga~~v~~ve~~~~a~~   51 (152)
T d2esra1           3 GAIFNMIGPYFNGGRVLDLFAGSGGLA-------------IEAVS-------R-----------GMSAAVLVEKNRKAQA   51 (152)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHH-------------HHHHH-------T-----------TCCEEEEECCCHHHHH
T ss_pred             HHHHHHHHhhCCCCeEEEcCCccCHHH-------------HHHHH-------h-----------Ccceeeeehhchhhhh
Confidence            334444443 36789999999999988             43332       1           2358999999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSE  190 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l~~  190 (241)
                      .+++++.                         +.++. .++++++.|+... +...++||+|++.-... .......+..
T Consensus        52 ~~~~n~~-------------------------~~~~~-~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~-~~~~~~~l~~  104 (152)
T d2esra1          52 IIQDNII-------------------------MTKAE-NRFTLLKMEAERAIDCLTGRFDLVFLDPPYA-KETIVATIEA  104 (152)
T ss_dssp             HHHHHHH-------------------------TTTCG-GGEEEECSCHHHHHHHBCSCEEEEEECCSSH-HHHHHHHHHH
T ss_pred             hhhhhhh-------------------------hcccc-cchhhhcccccccccccccccceeEechhhc-cchHHHHHHH
Confidence            9999998                         66665 5789999997663 34467899998753211 1223455555


Q ss_pred             HH--HhccCCcEEEEE
Q psy1420         191 AY--RVLKPGGRFLCL  204 (241)
Q Consensus       191 ~~--~~LkpgG~l~i~  204 (241)
                      +.  +.|+|||.+++-
T Consensus       105 i~~~~~L~~~g~iiiE  120 (152)
T d2esra1         105 LAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             HHHTTCEEEEEEEEEE
T ss_pred             HHHCCCcCCCeEEEEE
Confidence            54  579999998874

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.72  E-value=1.2e-08  Score=88.45  Aligned_cols=107  Identities=15%  Similarity=0.219  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||+.||+|.++             ..++.                   ...+++++|.|+.+++.+++++.   
T Consensus       131 ~~~~rVLdlf~~tG~~s-------------l~aa~-------------------~GA~V~~VD~s~~al~~a~~N~~---  175 (309)
T d2igta1         131 DRPLKVLNLFGYTGVAS-------------LVAAA-------------------AGAEVTHVDASKKAIGWAKENQV---  175 (309)
T ss_dssp             SSCCEEEEETCTTCHHH-------------HHHHH-------------------TTCEEEEECSCHHHHHHHHHHHH---
T ss_pred             cCCCeEEEecCCCcHHH-------------HHHHh-------------------CCCeEEEEeChHHHHHHHHHhhh---
Confidence            46779999999999988             44433                   35689999999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeee---ehhh------cc-ccHHHH
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIA---FGIR------NV-TRIDKA  187 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~---~~l~------~~-~~~~~~  187 (241)
                                            ..++.+.++++++.|+...    .....+||+|++.   ++..      .+ .+....
T Consensus       176 ----------------------ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l  233 (309)
T d2igta1         176 ----------------------LAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLM  233 (309)
T ss_dssp             ----------------------HHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHH
T ss_pred             ----------------------hhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHH
Confidence                                  6676655789999997653    1235689999973   2211      11 233566


Q ss_pred             HHHHHHhccCCcEEEEEe
Q psy1420         188 LSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~  205 (241)
                      +..+.++|+|||.+++..
T Consensus       234 ~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         234 LDICREILSPKALGLVLT  251 (309)
T ss_dssp             HHHHHHTBCTTCCEEEEE
T ss_pred             HHHHHHhcCCCCCEEEEe
Confidence            677888999999755543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=7.9e-09  Score=85.13  Aligned_cols=121  Identities=11%  Similarity=0.123  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      +..+|||+|||+|..+             ..++..++                ...+++++|.++.+.+.+++.+.    
T Consensus        56 kpk~ILEiGt~~G~St-------------i~la~al~----------------~~g~v~sid~~~~~~~~a~~~~~----  102 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSA-------------VRMARLLQ----------------PGARLLTMEMNPDYAAITQQMLN----  102 (214)
T ss_dssp             CCSEEEEECCTTSHHH-------------HHHHTTCC----------------TTCEEEEEESCHHHHHHHHHHHH----
T ss_pred             CCCEEEEEccCchhHH-------------HHHHHhCC----------------CccEEEEEeccHHHHHHHHHHHH----
Confidence            4459999999999988             33333111                35789999999999999999988    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk  196 (241)
                                           +.++. ++++++.+|..+. +     ...++||+|++...-. .......+.+..++|+
T Consensus       103 ---------------------~~gl~-~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~-~~~~~~~l~~~~~lLk  159 (214)
T d2cl5a1         103 ---------------------FAGLQ-DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD-RYLPDTLLLEKCGLLR  159 (214)
T ss_dssp             ---------------------HHTCG-GGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGG-GHHHHHHHHHHTTCEE
T ss_pred             ---------------------HcCCC-ccceeeeccccccccchhhcccccccceeeeccccc-ccccHHHHHHHhCccC
Confidence                                 77776 6799999997653 2     2346799998753211 1122345677788999


Q ss_pred             CCcEEEEEe---cCHHHHHHHHHHCC
Q psy1420         197 PGGRFLCLE---FSHEEFKSMIESAG  219 (241)
Q Consensus       197 pgG~l~i~~---~~~~~~~~~l~~~G  219 (241)
                      |||++++-+   .+.....+.++...
T Consensus       160 pGGvIv~Ddvl~~g~~~~~~~vr~~~  185 (214)
T d2cl5a1         160 KGTVLLADNVIVPGTPDFLAYVRGSS  185 (214)
T ss_dssp             EEEEEEESCCCCCCCHHHHHHHHHCT
T ss_pred             CCcEEEEeCcCCCCChHHHHHHhccC
Confidence            999887622   12244545555443

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.69  E-value=3e-08  Score=79.75  Aligned_cols=131  Identities=18%  Similarity=0.244  Sum_probs=100.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+++.+.+++++.++|+.+|.|..+             ..++.                   ...+++++|..+.++
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs-------------~~iL~-------------------~~~~viaiD~D~~ai   53 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHA-------------RGILE-------------------RGGRVIGLDQDPEAV   53 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHH-------------HHHhc-------------------ccCcEEEEhhhhhHH
Confidence            3456677888899999999999999988             55555                   356899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeehhhcc----
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFGIRNV----  181 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~l~~~----  181 (241)
                      +.++....                               +++.+++.++..+.     ...+++|.|+...++...    
T Consensus        54 ~~a~~~~~-------------------------------~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~  102 (182)
T d1wg8a2          54 ARAKGLHL-------------------------------PGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDD  102 (182)
T ss_dssp             HHHHHTCC-------------------------------TTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHC
T ss_pred             HHHhhccc-------------------------------cceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhc
Confidence            88875422                               46888888877653     234679999987766432    


Q ss_pred             -----ccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEE
Q psy1420         182 -----TRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVT  224 (241)
Q Consensus       182 -----~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~  224 (241)
                           ......|....+.|+|||++.+..+..   +.+++.+++.++....
T Consensus       103 ~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i~  153 (182)
T d1wg8a2         103 PSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVLT  153 (182)
T ss_dssp             GGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEESC
T ss_pred             chHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceecc
Confidence                 234567888889999999999999877   5578888888876543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.4e-07  Score=76.80  Aligned_cols=142  Identities=10%  Similarity=0.103  Sum_probs=94.8

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..++||+|||+|..+             ..++.    ..             +..+++++|+++.+++.|++++.   
T Consensus        60 ~~~~~~LDiGtGsg~I~-------------~~l~~----~~-------------~~~~~~~~Di~~~al~~A~~N~~---  106 (250)
T d2h00a1          60 STLRRGIDIGTGASCIY-------------PLLGA----TL-------------NGWYFLATEVDDMCFNYAKKNVE---  106 (250)
T ss_dssp             CCCCEEEEESCTTTTHH-------------HHHHH----HH-------------HCCEEEEEESCHHHHHHHHHHHH---
T ss_pred             cccceEEEeCCCchHHH-------------HHHHH----hC-------------CCccccceecCHHHHHHHHHHHH---
Confidence            44568999999999987             22211    11             35789999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC------CCCCceeEEeeeehhhcc--------------
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP------IESDSYSAYTIAFGIRNV--------------  181 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D~V~~~~~l~~~--------------  181 (241)
                                            +.++. .++.+...+....-      ...++||+|+|+--....              
T Consensus       107 ----------------------~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~  163 (250)
T d2h00a1         107 ----------------------QNNLS-DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRR  163 (250)
T ss_dssp             ----------------------HTTCT-TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC----------------
T ss_pred             ----------------------HhCCC-cceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccc
Confidence                                  66666 56777765543321      224579999987433210              


Q ss_pred             ---------------------ccHHHHHHHHHHhccCCcEEEEEec---CHHHHHHHHHHCCCceEEEEEec-CceeEEE
Q psy1420         182 ---------------------TRIDKALSEAYRVLKPGGRFLCLEF---SHEEFKSMIESAGFQYVTYENLT-FGVVAIH  236 (241)
Q Consensus       182 ---------------------~~~~~~l~~~~~~LkpgG~l~i~~~---~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~  236 (241)
                                           .-..+.+++...++++.|++.+..-   ..+.+.+.+++.|+..++..... +....-+
T Consensus       164 ~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ie~~qG~~~r~i  243 (250)
T d2h00a1         164 PPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWA  243 (250)
T ss_dssp             ---------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEE
T ss_pred             cCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEEEecCCCEeEEE
Confidence                                 0134456677778899998765332   22789999999999766666553 4344444


Q ss_pred             eee
Q psy1420         237 SGF  239 (241)
Q Consensus       237 ~~~  239 (241)
                      +|+
T Consensus       244 iaW  246 (250)
T d2h00a1         244 LAW  246 (250)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=5.3e-08  Score=82.96  Aligned_cols=130  Identities=15%  Similarity=0.113  Sum_probs=85.9

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++.....+..+++|+|||+|..+             ..++.                  .+..+++++|+|+.+++.
T Consensus       100 ~~~~~~~~~~~~~~vld~g~GsG~i~-------------~~la~------------------~~~~~v~a~Dis~~Al~~  148 (271)
T d1nv8a_         100 ELALELIRKYGIKTVADIGTGSGAIG-------------VSVAK------------------FSDAIVFATDVSSKAVEI  148 (271)
T ss_dssp             HHHHHHHHHHTCCEEEEESCTTSHHH-------------HHHHH------------------HSSCEEEEEESCHHHHHH
T ss_pred             hhhhhhhccccccEEEEeeeeeehhh-------------hhhhh------------------cccceeeechhhhhHHHH
Confidence            33444333344558999999999877             22221                  146689999999999999


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeeh-------hhc-c-c
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFG-------IRN-V-T  182 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~-------l~~-~-~  182 (241)
                      +++++.                         +.++. .++.+...+..+.. ...++||+|+++--       +.. + -
T Consensus       149 A~~Na~-------------------------~~~~~-~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~  202 (271)
T d1nv8a_         149 ARKNAE-------------------------RHGVS-DRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLF  202 (271)
T ss_dssp             HHHHHH-------------------------HTTCT-TSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCC
T ss_pred             HHHHHH-------------------------HcCCC-ceeEEeecccccccccccCcccEEEEcccccCcccccceeeee
Confidence            999998                         66665 46777788876642 23468999998721       000 0 0


Q ss_pred             cHH----------HHH-HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCC
Q psy1420         183 RID----------KAL-SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGF  220 (241)
Q Consensus       183 ~~~----------~~l-~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf  220 (241)
                      +|.          .++ +-+.++|+|||.+++ +.+.   +.+.+++++.||
T Consensus       203 EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~-Eig~~Q~~~v~~l~~~~g~  253 (271)
T d1nv8a_         203 EPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGEDQVEELKKIVSDTVF  253 (271)
T ss_dssp             SCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTTCHHHHTTTSTTCEE
T ss_pred             ccccccccccchHHHHHHHHHHhcCCCCEEEE-EECHHHHHHHHHHHHhCCE
Confidence            111          122 224578999998776 4443   778888888887

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5e-08  Score=80.57  Aligned_cols=107  Identities=12%  Similarity=0.100  Sum_probs=81.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+|||+|||+|..+             ..++..+.                ...+++++|.++...+.+++...   
T Consensus        58 ~~~k~vLEiGt~~GySt-------------l~~a~al~----------------~~g~i~tie~~~~~~~~A~~~~~---  105 (219)
T d2avda1          58 IQAKKALDLGTFTGYSA-------------LALALALP----------------ADGRVVTCEVDAQPPELGRPLWR---  105 (219)
T ss_dssp             TTCCEEEEECCTTSHHH-------------HHHHTTSC----------------TTCEEEEEESCSHHHHHHHHHHH---
T ss_pred             cCCCeEEEEechhhHHH-------------HHHHHhCC----------------CCceEEEEeechhHHHHHHHHHH---
Confidence            34559999999999988             44433111                36789999999999999999998   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                            +.++. .+++++.+|+.+. +     ...++||+|+....   -......++.+.+.|
T Consensus       106 ----------------------~ag~~-~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL  159 (219)
T d2avda1         106 ----------------------QAEAE-HKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLL  159 (219)
T ss_dssp             ----------------------HTTCT-TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHE
T ss_pred             ----------------------hcCcc-ceEEEEEeehhhcchhhhhhcccCCccEEEEeCC---HHHHHHHHHHHHHHh
Confidence                                  77776 6899999987653 1     23568999997432   245567788889999


Q ss_pred             cCCcEEEEEec
Q psy1420         196 KPGGRFLCLEF  206 (241)
Q Consensus       196 kpgG~l~i~~~  206 (241)
                      +|||.+++-..
T Consensus       160 ~~GGvii~Dn~  170 (219)
T d2avda1         160 RPGGILAVLRV  170 (219)
T ss_dssp             EEEEEEEEECC
T ss_pred             cCCcEEEEeCC
Confidence            99999988543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.56  E-value=2.5e-07  Score=75.11  Aligned_cols=127  Identities=10%  Similarity=0.100  Sum_probs=81.4

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      ...+.-.|.+|||+|||+|..+             ..++.                  .....++++|+++.+++.++++
T Consensus        40 ~~~~dl~g~~vLDlg~GtG~l~-------------i~a~~------------------~g~~~v~~vdi~~~~~~~a~~N   88 (201)
T d1wy7a1          40 YSLGDIEGKVVADLGAGTGVLS-------------YGALL------------------LGAKEVICVEVDKEAVDVLIEN   88 (201)
T ss_dssp             HHTTSSTTCEEEEETCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEECcCcchHHH-------------HHHHH------------------cCCCEEEEEcCcHHHHHHHHHH
Confidence            3344456789999999999987             33332                  0235799999999999999999


Q ss_pred             HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHh
Q psy1420         117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRV  194 (241)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~  194 (241)
                      +.                         ..+.   +.++...|+...   .++||+|+++--.....  .....+...   
T Consensus        89 ~~-------------------------~~~~---~~~~~~~d~~~~---~~~fD~Vi~nPP~~~~~~~~d~~~l~~~---  134 (201)
T d1wy7a1          89 LG-------------------------EFKG---KFKVFIGDVSEF---NSRVDIVIMNPPFGSQRKHADRPFLLKA---  134 (201)
T ss_dssp             TG-------------------------GGTT---SEEEEESCGGGC---CCCCSEEEECCCCSSSSTTTTHHHHHHH---
T ss_pred             HH-------------------------HcCC---CceEEECchhhh---CCcCcEEEEcCccccccccccHHHHHHH---
Confidence            87                         4443   478888888775   46799999874432211  112333333   


Q ss_pred             ccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEe
Q psy1420         195 LKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       195 LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.+++.++......    .-++.+....|+.+......
T Consensus       135 ~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~~~~  172 (201)
T d1wy7a1         135 FEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTT  172 (201)
T ss_dssp             HHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HhhcccchhcccchHHHHHHHHHHHhhcCceEEEEEEe
Confidence            33344444433222    34567778888876655443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=1.6e-08  Score=80.23  Aligned_cols=103  Identities=13%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .++.+|||++||+|..+             ...+.                   ...+++++|.++.+++.+++++.   
T Consensus        40 ~~g~~vLDl~~G~G~~~-------------i~a~~-------------------~ga~vv~vD~~~~a~~~~~~N~~---   84 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVG-------------LEAAS-------------------EGWEAVLVEKDPEAVRLLKENVR---   84 (171)
T ss_dssp             TTCCEEEEETCSSCHHH-------------HHHHH-------------------TTCEEEEECCCHHHHHHHHHHHH---
T ss_pred             cCCCeEEEeccccchhh-------------hhhhh-------------------ccchhhhcccCHHHHhhhhHHHH---
Confidence            46779999999999988             44433                   45678899999999999999988   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccC--CCCCCCCceeEEeeeehhhccccHHHHHHHH--HHhccC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTRIDKALSEA--YRVLKP  197 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~--~~~Lkp  197 (241)
                                            ..++. .++....+|..  ......++||+|++.--.+.  +..+.+..+  ..+|+|
T Consensus        85 ----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~--~~~~~l~~l~~~~ll~~  139 (171)
T d1ws6a1          85 ----------------------RTGLG-ARVVALPVEVFLPEAKAQGERFTVAFMAPPYAM--DLAALFGELLASGLVEA  139 (171)
T ss_dssp             ----------------------HHTCC-CEEECSCHHHHHHHHHHTTCCEEEEEECCCTTS--CTTHHHHHHHHHTCEEE
T ss_pred             ----------------------hhccc-cceeeeehhcccccccccCCccceeEEcccccc--CHHHHHHHHHHcCCcCC
Confidence                                  55554 23333333321  11233568999997422111  112223333  357999


Q ss_pred             CcEEEEE
Q psy1420         198 GGRFLCL  204 (241)
Q Consensus       198 gG~l~i~  204 (241)
                      ||++++-
T Consensus       140 ~g~ivie  146 (171)
T d1ws6a1         140 GGLYVLQ  146 (171)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEE
Confidence            9988764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=6.3e-07  Score=77.26  Aligned_cols=143  Identities=15%  Similarity=0.158  Sum_probs=91.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420          32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR  111 (241)
Q Consensus        32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~  111 (241)
                      .+.+...+..+++.+|+|.+||+|.+.             ..+..    .+.....        ....++|+|+++.+++
T Consensus       106 ~~l~~~~~~~~~~~~vlDp~~GsG~~l-------------~~~~~----~l~~~~~--------~~~~~~g~di~~~~~~  160 (328)
T d2f8la1         106 AYLLEKVIQKKKNVSILDPACGTANLL-------------TTVIN----QLELKGD--------VDVHASGVDVDDLLIS  160 (328)
T ss_dssp             HHHHHHHHTTCSEEEEEETTCTTSHHH-------------HHHHH----HHHTTSS--------CEEEEEEEESCHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCcchhH-------------HHHHH----HHHhccC--------ccceEEEecccHHHHH
Confidence            334444556678889999999999877             43333    1211111        2457899999999999


Q ss_pred             HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc---------
Q psy1420         112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---------  182 (241)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~---------  182 (241)
                      .|+.+..                         ..+.   .....+.|..... ...+||+|+++--.....         
T Consensus       161 ~a~~~~~-------------------------~~~~---~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~  211 (328)
T d2f8la1         161 LALVGAD-------------------------LQRQ---KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFE  211 (328)
T ss_dssp             HHHHHHH-------------------------HHTC---CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTST
T ss_pred             HHHHHHH-------------------------Hhhh---hhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcc
Confidence            9887766                         2222   2455566654432 346899999884332111         


Q ss_pred             ---------cHHHHHHHHHHhccCCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEec
Q psy1420         183 ---------RIDKALSEAYRVLKPGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       183 ---------~~~~~l~~~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                               -...++..+.+.|+|||++.++....       +.+++.+.+.+ .+..+..+.
T Consensus       212 ~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~-~i~~ii~lp  273 (328)
T d2f8la1         212 LCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG-HIEGIIKLP  273 (328)
T ss_dssp             TCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE-EEEEEEECC
T ss_pred             hhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC-cEEEEEECC
Confidence                     12347899999999999987765433       66777777764 555555543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.41  E-value=2e-07  Score=75.66  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420          40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE  119 (241)
Q Consensus        40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~  119 (241)
                      +.-.|.+|||+|||+|..+             ..++.                  .....++++|+++.+++.+++++. 
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~-------------i~a~~------------------~ga~~V~~vDid~~a~~~ar~N~~-   92 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILA-------------CGSYL------------------LGAESVTAFDIDPDAIETAKRNCG-   92 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHH-------------HHHHH------------------TTBSEEEEEESCHHHHHHHHHHCT-
T ss_pred             CCCCCCEEEEeCCCCcHHH-------------HHHHH------------------cCCCcccccccCHHHHHHHHHccc-
Confidence            3346789999999999877             32222                  023469999999999999998765 


Q ss_pred             CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee
Q psy1420         120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF  176 (241)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~  176 (241)
                                                     ++++.++|+.+++   ++||+|+++-
T Consensus        93 -------------------------------~~~~~~~D~~~l~---~~fD~Vi~NP  115 (197)
T d1ne2a_          93 -------------------------------GVNFMVADVSEIS---GKYDTWIMNP  115 (197)
T ss_dssp             -------------------------------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred             -------------------------------cccEEEEehhhcC---CcceEEEeCc
Confidence                                           5788999988764   6799999873

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.31  E-value=2.9e-07  Score=76.27  Aligned_cols=105  Identities=11%  Similarity=0.040  Sum_probs=80.4

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      +..+|||+|+++|..+             ..++..++                ..++++.+|.++...+.|++.+.    
T Consensus        59 ~~k~iLEiGT~~GySt-------------l~la~al~----------------~~g~v~tie~~~~~~~~A~~~~~----  105 (227)
T d1susa1          59 NAKNTMEIGVYTGYSL-------------LATALAIP----------------EDGKILAMDINKENYELGLPVIK----  105 (227)
T ss_dssp             TCCEEEEECCGGGHHH-------------HHHHHHSC----------------TTCEEEEEESCCHHHHHHHHHHH----
T ss_pred             CCCcEEEecchhhhhH-------------HHHHhhCC----------------CCcEEEEEeccchhHHHHHHHHH----
Confidence            4559999999999988             33332111                36799999999999999999998    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C------CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P------IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL  195 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L  195 (241)
                                           +.++. ++++++.+++.+. +      ...++||+|+.-.   .-......++.+.++|
T Consensus       106 ---------------------~~g~~-~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll  160 (227)
T d1susa1         106 ---------------------KAGVD-HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLV  160 (227)
T ss_dssp             ---------------------HTTCG-GGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHB
T ss_pred             ---------------------Hhccc-cceeeeehHHHHHHHHHHhccccCCceeEEEecc---chhhhHHHHHHHHhhc
Confidence                                 77776 6899999997653 1      1246899999753   2245678888889999


Q ss_pred             cCCcEEEEEe
Q psy1420         196 KPGGRFLCLE  205 (241)
Q Consensus       196 kpgG~l~i~~  205 (241)
                      +|||.+++-.
T Consensus       161 ~~gGiii~DN  170 (227)
T d1susa1         161 KVGGVIGYDN  170 (227)
T ss_dssp             CTTCCEEEET
T ss_pred             CCCcEEEEcc
Confidence            9999998843

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.2e-06  Score=69.84  Aligned_cols=122  Identities=16%  Similarity=0.285  Sum_probs=89.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+++|+|+|.|--+             ..++-    +   .          +..+++.+|.+..-+.+.+....    
T Consensus        65 ~~~~ilDiGsGaG~PG-------------i~laI----~---~----------p~~~~~Lves~~KK~~FL~~~~~----  110 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPG-------------IPLSI----V---R----------PEAHFTLLDSLGKRVRFLRQVQH----  110 (207)
T ss_dssp             CSSEEEEETCTTTTTH-------------HHHHH----H---C----------TTSEEEEEESCHHHHHHHHHHHH----
T ss_pred             cCCceeeeeccCCcee-------------eehhh----h---c----------ccceEEEEecchHHHHHHHHHHH----
Confidence            4568999999999887             22211    1   1          46789999999999999988877    


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL  202 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  202 (241)
                                           +.++.  ++.+++..+++... ..+||+|++    +.+.++...++-+...++++|.++
T Consensus       111 ---------------------~L~L~--nv~v~~~R~E~~~~-~~~fD~V~s----RA~~~~~~ll~~~~~~l~~~g~~~  162 (207)
T d1jsxa_         111 ---------------------ELKLE--NIEPVQSRVEEFPS-EPPFDGVIS----RAFASLNDMVSWCHHLPGEQGRFY  162 (207)
T ss_dssp             ---------------------HTTCS--SEEEEECCTTTSCC-CSCEEEEEC----SCSSSHHHHHHHHTTSEEEEEEEE
T ss_pred             ---------------------HcCCc--ceeeeccchhhhcc-ccccceehh----hhhcCHHHHHHHHHHhcCCCcEEE
Confidence                                 55655  78999999998753 457999987    778889999999999999999998


Q ss_pred             EEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420         203 CLEFSH--EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       203 i~~~~~--~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      +.--..  +++..+  +.+++.......
T Consensus       163 ~~KG~~~~eEl~~~--~~~~~~~~~~~~  188 (207)
T d1jsxa_         163 ALKGQMPEDEIALL--PEEYQVESVVKL  188 (207)
T ss_dssp             EEESSCCHHHHHTS--CTTEEEEEEEEE
T ss_pred             EECCCCHHHHHHhh--hcCCEEEEEEEe
Confidence            865322  443322  246665544433

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=8.3e-06  Score=70.77  Aligned_cols=138  Identities=11%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420          28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN  107 (241)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~  107 (241)
                      ...+.+.+.+.+...++.+|+|+-||+|.++             ..++.                   ...+++++|.++
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fs-------------l~La~-------------------~~~~V~gvE~~~  244 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFT-------------LPLAT-------------------QAASVVGVEGVP  244 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTH-------------HHHHT-------------------TSSEEEEEESCH
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccc-------------hhccc-------------------cccEEEeccCcH
Confidence            3445566777778888889999999999999             44433                   467899999999


Q ss_pred             HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhcccc
Q psy1420         108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTR  183 (241)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~  183 (241)
                      .+++.|++++.                         ..++.  ++.++.++.+..    +....++|+|+..=-= .-  
T Consensus       245 ~ai~~A~~na~-------------------------~n~i~--n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR-~G--  294 (358)
T d1uwva2         245 ALVEKGQQNAR-------------------------LNGLQ--NVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR-AG--  294 (358)
T ss_dssp             HHHHHHHHHHH-------------------------HTTCC--SEEEEECCTTSCCSSSGGGTTCCSEEEECCCT-TC--
T ss_pred             HHHHHHHHhHH-------------------------hcccc--cceeeecchhhhhhhhhhhhccCceEEeCCCC-cc--
Confidence            99999999988                         66665  788888887653    2224578998753110 00  


Q ss_pred             HHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEecC
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLTF  230 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~~  230 (241)
                      ..+.+..+.+. +|.-.++++ -.+    +++. .|.+.||++.++..+.+
T Consensus       295 ~~~~~~~l~~~-~~~~ivYVS-Cnp~TlaRDl~-~l~~~gy~l~~i~~~D~  342 (358)
T d1uwva2         295 AAGVMQQIIKL-EPIRIVYVS-CNPATLARDSE-ALLKAGYTIARLAMLDM  342 (358)
T ss_dssp             CHHHHHHHHHH-CCSEEEEEE-SCHHHHHHHHH-HHHHTTCEEEEEEEECC
T ss_pred             HHHHHHHHHHc-CCCEEEEEe-CCHHHHHHHHH-HHHHCCCeEeEEEEEec
Confidence            12455555553 677666664 334    4443 35678999998887753

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.25  E-value=1e-06  Score=70.32  Aligned_cols=117  Identities=15%  Similarity=0.181  Sum_probs=83.5

Q ss_pred             HHHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          30 LWKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        30 ~~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      ..++.+...+.. ..+.+|||+.||+|.++             ...+.       +           ...+++++|.++.
T Consensus        27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g-------------~ea~s-------r-----------Ga~~v~~ve~~~~   75 (182)
T d2fhpa1          27 KVKESIFNMIGPYFDGGMALDLYSGSGGLA-------------IEAVS-------R-----------GMDKSICIEKNFA   75 (182)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHH-------------HHHHH-------T-----------TCSEEEEEESCHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEccccccccc-------------ceeee-------c-----------chhHHHHHHHHHH
Confidence            456677676653 57889999999999998             44433       0           2347999999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccH
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRI  184 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~  184 (241)
                      +++.+++++.                         ..+.. .++.+++.|+...    .....+||+|++.--. .....
T Consensus        76 a~~~~~~N~~-------------------------~~~~~-~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY-~~~~~  128 (182)
T d2fhpa1          76 ALKVIKENIA-------------------------ITKEP-EKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-AKQEI  128 (182)
T ss_dssp             HHHHHHHHHH-------------------------HHTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-GGCCH
T ss_pred             HHHHHHHHhh-------------------------hhhcc-cccccccccchhhhhhhcccCCCcceEEechhh-hhhHH
Confidence            9999999988                         44544 4688999997652    1234589999975322 23345


Q ss_pred             HHHHHHHHH--hccCCcEEEEE
Q psy1420         185 DKALSEAYR--VLKPGGRFLCL  204 (241)
Q Consensus       185 ~~~l~~~~~--~LkpgG~l~i~  204 (241)
                      ...+..+..  +|+|+|.+++-
T Consensus       129 ~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         129 VSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCCCCEEEEEE
Confidence            667777654  69999988763

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=7.6e-06  Score=68.02  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=95.5

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+++|+|+|.|--.             ..+    +.+   .          +..+++.+|.+..-..+.+....   
T Consensus        69 ~~~~~ilDiGSGaGfPG-------------i~l----aI~---~----------p~~~v~Lves~~KK~~FL~~v~~---  115 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPS-------------LPI----KIC---F----------PHLHVTIVDSLNKRITFLEKLSE---  115 (239)
T ss_dssp             GGCCEEEEECSSSCTTH-------------HHH----HHH---C----------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred             cCCCeEEeecCCCchHH-------------HHH----HHh---C----------CCccceeecchHHHHHHHHHHHH---
Confidence            45678999999999887             211    111   1          35689999999999999888777   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC---CCCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI---ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG  198 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg  198 (241)
                                            +.++.  ++.+++..++....   ..++||+|++    +.+..+...++-+...+++|
T Consensus       116 ----------------------~L~L~--n~~i~~~R~E~~~~~~~~~~~~D~v~s----RAva~l~~ll~~~~~~l~~~  167 (239)
T d1xdza_         116 ----------------------ALQLE--NTTFCHDRAETFGQRKDVRESYDIVTA----RAVARLSVLSELCLPLVKKN  167 (239)
T ss_dssp             ----------------------HHTCS--SEEEEESCHHHHTTCTTTTTCEEEEEE----ECCSCHHHHHHHHGGGEEEE
T ss_pred             ----------------------HhCCC--CcEEEeehhhhccccccccccceEEEE----hhhhCHHHHHHHHhhhcccC
Confidence                                  55665  67888888776532   2458999998    67889999999999999999


Q ss_pred             cEEEEEecCH-----HHHHHHHHHCCCceEEEEEec
Q psy1420         199 GRFLCLEFSH-----EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       199 G~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                      |.+++.--..     ++.+..+...|+++.++....
T Consensus       168 g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~  203 (239)
T d1xdza_         168 GLFVALKAASAEEELNAGKKAITTLGGELENIHSFK  203 (239)
T ss_dssp             EEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEe
Confidence            9998865333     444567788899887776653

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=9e-07  Score=70.57  Aligned_cols=137  Identities=12%  Similarity=0.128  Sum_probs=87.6

Q ss_pred             HHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          31 WKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        31 ~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .++.+...+.. -.+.+|||++||+|..+             ...+.                  ....+++.+|.++.+
T Consensus        30 vre~lfn~l~~~~~~~~vLDlfaGsG~~g-------------ieals------------------rGa~~v~~VE~~~~a   78 (183)
T d2fpoa1          30 VRETLFNWLAPVIVDAQCLDCFAGSGALG-------------LEALS------------------RYAAGATLIEMDRAV   78 (183)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHH-------------HHHHH------------------TTCSEEEEECSCHHH
T ss_pred             HHHHHHhhhhcccchhhhhhhhcccccee-------------eeEEe------------------cCcceeEEEEEeech
Confidence            34444444332 35679999999999998             44433                  033579999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKAL  188 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l  188 (241)
                      ++.+++++.                         ..+..  +..++..|+... .....+||+|++.--.. .....+.+
T Consensus        79 ~~~~k~N~~-------------------------~~~~~--~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~-~~~~~~~l  130 (183)
T d2fpoa1          79 SQQLIKNLA-------------------------TLKAG--NARVVNSNAMSFLAQKGTPHNIVFVDPPFR-RGLLEETI  130 (183)
T ss_dssp             HHHHHHHHH-------------------------HTTCC--SEEEECSCHHHHHSSCCCCEEEEEECCSSS-TTTHHHHH
T ss_pred             hhHHHHHHh-------------------------hcccc--ceeeeeecccccccccccccCEEEEcCccc-cchHHHHH
Confidence            999999988                         44443  577888886643 33457899999853322 23455667


Q ss_pred             HHHHH--hccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         189 SEAYR--VLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       189 ~~~~~--~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ..+.+  +|+|+|.+++-......+..  ...||.+.+....
T Consensus       131 ~~l~~~~~L~~~~iIiiE~~~~~~~~~--~~~~~~i~k~k~y  170 (183)
T d2fpoa1         131 NLLEDNGWLADEALIYVESEVENGLPT--VPANWSLHREKVA  170 (183)
T ss_dssp             HHHHHTTCEEEEEEEEEEEEGGGCSCC--CCTTEEEEEEEEE
T ss_pred             HHHHHCCCCCCCeEEEEEecCcCCccc--CCCCcEEEEEEEe
Confidence            66665  69999988874322211111  1246766665433

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.22  E-value=2.2e-06  Score=71.09  Aligned_cols=85  Identities=8%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      ...+.+.+.++..++.+|||+|||+|..+             ..++.                   ....++++|+++.+
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT-------------~~Ll~-------------------~~~~v~avE~D~~l   55 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFT-------------LELVQ-------------------RCNFVTAIEIDHKL   55 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEECSCHHH
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHH-------------HHHHh-------------------CcCceEEEeeccch
Confidence            34567778888889999999999999999             66665                   45689999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA  175 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~  175 (241)
                      .+.++++..                         .    .++++++++|+...+++......|+.+
T Consensus        56 ~~~l~~~~~-------------------------~----~~n~~i~~~D~l~~~~~~~~~~~vv~N   92 (235)
T d1qama_          56 CKTTENKLV-------------------------D----HDNFQVLNKDILQFKFPKNQSYKIFGN   92 (235)
T ss_dssp             HHHHHHHTT-------------------------T----CCSEEEECCCGGGCCCCSSCCCEEEEE
T ss_pred             HHHHHHHhh-------------------------c----ccchhhhhhhhhhccccccccceeeee
Confidence            999887765                         1    147999999999887665444445543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.19  E-value=3.7e-06  Score=72.50  Aligned_cols=134  Identities=14%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ...+++.+|.+|||+.+|+|.=+             ..++.    ++.            ....+++.|.++..++.+.+
T Consensus       109 ~~~l~~~~g~~vlD~CAapGgKt-------------~~l~~----~~~------------~~~~i~a~d~~~~r~~~l~~  159 (313)
T d1ixka_         109 PVALDPKPGEIVADMAAAPGGKT-------------SYLAQ----LMR------------NDGVIYAFDVDENRLRETRL  159 (313)
T ss_dssp             HHHHCCCTTCEEEECCSSCSHHH-------------HHHHH----HTT------------TCSEEEEECSCHHHHHHHHH
T ss_pred             hhcccCCccceeeecccchhhhh-------------Hhhhh----hcc------------cccceeeeccCHHHHHHHHH
Confidence            34567889999999999999877             44433    111            35679999999999999988


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hhhccc-------
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GIRNVT-------  182 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l~~~~-------  182 (241)
                      +..                         +.++.  ++.....|....+.....||.|++--      +++.-+       
T Consensus       160 ~~~-------------------------r~~~~--~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~  212 (313)
T d1ixka_         160 NLS-------------------------RLGVL--NVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRT  212 (313)
T ss_dssp             HHH-------------------------HHTCC--SEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CC
T ss_pred             HHH-------------------------HHHhh--ccccccccccccccccccccEEEEccccccCCceeeccchhhhhh
Confidence            888                         55654  56667777766665567899998521      121111       


Q ss_pred             --c-------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCCCceEEE
Q psy1420         183 --R-------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       183 --~-------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~Gf~~~~~  225 (241)
                        +       -.+.|..+.+.|||||+++-++-+-      +-++..+++.+|+.+..
T Consensus       213 ~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~~~~  270 (313)
T d1ixka_         213 MDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPL  270 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             hhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEEeec
Confidence              1       1477888999999999988776554      56677778887766543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.15  E-value=5.9e-06  Score=73.79  Aligned_cols=157  Identities=15%  Similarity=0.059  Sum_probs=98.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP  108 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~  108 (241)
                      +...+.|.+.+.+.++.+|+|..||+|.+.             ..+..    .+........-........++|.|+++.
T Consensus       148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL-------------~~a~~----~~~~~~~~~~~~~~~~~~~l~g~E~~~~  210 (425)
T d2okca1         148 RPLIQAMVDCINPQMGETVCDPACGTGGFL-------------LTAYD----YMKGQSASKEKRDFLRDKALHGVDNTPL  210 (425)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHH-------------HHHHH----HHHTCC-CCHHHHHHHHTTEEEEESCHH
T ss_pred             hhhhHhhheeccCcccceeeccccccCccH-------------HHHHH----HHHhhccchhhhhhhhhhhhhhhhccHH
Confidence            345678888888888899999999999987             33333    2221111000000001346899999999


Q ss_pred             hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh--ccc----
Q psy1420         109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--NVT----  182 (241)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~--~~~----  182 (241)
                      +...+..+..                         -.+.......+...|....+ ...+||+|+++--..  ...    
T Consensus       211 ~~~la~~n~~-------------------------l~g~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~  264 (425)
T d2okca1         211 VVTLASMNLY-------------------------LHGIGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDI  264 (425)
T ss_dssp             HHHHHHHHHH-------------------------HTTCCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCC
T ss_pred             HHHHHHhhhh-------------------------hcCCccccceeecCchhhhh-cccccceEEecCCCCCCccccchh
Confidence            9999888766                         22333223455666655433 346899999874331  110    


Q ss_pred             -----------cHHHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEec
Q psy1420         183 -----------RIDKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       183 -----------~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                                 ....++..+.+.|+|||++.++....        +.+++.|.+.+ .+..+..+.
T Consensus       265 ~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~-~i~aIi~LP  329 (425)
T d2okca1         265 NRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF-NLHTILRLP  329 (425)
T ss_dssp             CCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE-EEEEEEECC
T ss_pred             hhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHhc-chhHhhcCC
Confidence                       12368899999999999988765433        56777777664 344555443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.14  E-value=7e-06  Score=69.52  Aligned_cols=138  Identities=10%  Similarity=0.093  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      .+..+||.+|+|.|..+             ..++.        .          ...+++.+|+++..++.+++......
T Consensus        71 ~~p~~vLiiG~G~G~~~-------------~~~l~--------~----------~~~~v~~VEiD~~Vi~~a~~~f~~~~  119 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTV-------------REVLQ--------H----------DVDEVIMVEIDEDVIMVSKDLIKIDN  119 (276)
T ss_dssp             SCCCEEEEEECTTSHHH-------------HHHTT--------S----------CCSEEEEEESCHHHHHHHHHHTCTTT
T ss_pred             CCCceEEEecCCchHHH-------------HHHHH--------h----------CCceEEEecCCHHHHHHHHHhhhhcc
Confidence            34559999999999877             43333        1          23478999999999999986543000


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc----HHHHHHHHHHhccC
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKP  197 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lkp  197 (241)
                         .             ... .......++++++.+|+...-...++||+|++-..-..-+.    -..+++.+++.|+|
T Consensus       120 ---~-------------~~~-~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~  182 (276)
T d1mjfa_         120 ---G-------------LLE-AMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN  182 (276)
T ss_dssp             ---T-------------HHH-HHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEE
T ss_pred             ---c-------------hhh-hhhccCCCCceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCC
Confidence               0             000 00011235899999997643223568999996432211111    15789999999999


Q ss_pred             CcEEEEEecC----HHHH---HHHHHHCCCceEEEEEe
Q psy1420         198 GGRFLCLEFS----HEEF---KSMIESAGFQYVTYENL  228 (241)
Q Consensus       198 gG~l~i~~~~----~~~~---~~~l~~~Gf~~~~~~~~  228 (241)
                      ||.+++...+    .+.+   .+.+++. |..+.....
T Consensus       183 ~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~  219 (276)
T d1mjfa_         183 PGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSF  219 (276)
T ss_dssp             EEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEE
T ss_pred             CceEEEecCCcchhHHHHHHHHHHHHhh-CCeeEEEEe
Confidence            9999875422    2333   3444454 777666543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=7.7e-06  Score=70.00  Aligned_cols=143  Identities=13%  Similarity=0.095  Sum_probs=91.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||-+|+|.|..+             ..++.        .         ....+++++|+++..++.+++.....  
T Consensus        89 ~pk~VLiiGgG~G~~~-------------r~~l~--------~---------~~~~~i~~VEIDp~Vi~~a~~~~~~~--  136 (295)
T d1inla_          89 NPKKVLIIGGGDGGTL-------------REVLK--------H---------DSVEKAILCEVDGLVIEAARKYLKQT--  136 (295)
T ss_dssp             SCCEEEEEECTTCHHH-------------HHHTT--------S---------TTCSEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CCceEEEecCCchHHH-------------HHHHh--------c---------CCCceEEEecCCHHHHHHHHHHHHhh--
Confidence            3459999999999887             44433        1         13567999999999999998764310  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc-cc----cHHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN-VT----RIDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~-~~----~~~~~l~~~~~~Lk  196 (241)
                                           ...+.+++++++..|+... ...+++||+|++-..-.. .+    --..+++.+++.|+
T Consensus       137 ---------------------~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~  195 (295)
T d1inla_         137 ---------------------SCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK  195 (295)
T ss_dssp             ---------------------HGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEE
T ss_pred             ---------------------cccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcC
Confidence                                 1122336889999996653 233568999997532211 11    12588999999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEec---C--ceeEEEeee
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENLT---F--GVVAIHSGF  239 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~~---~--~~~~~~~~~  239 (241)
                      |||.+++...+.       ..+.+.+++. |..+......   +  |.-+...|.
T Consensus       196 ~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPtyp~G~w~f~~aS  249 (295)
T d1inla_         196 EDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYTFAS  249 (295)
T ss_dssp             EEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEEEEE
T ss_pred             CCcEEEEecCChhhhhHHHHHHHHHHHhh-cceeEEEEeeeceecCcccEEEEEe
Confidence            999998865443       3344445555 7666655432   2  555555554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.06  E-value=7.1e-07  Score=74.68  Aligned_cols=87  Identities=9%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+.+.++..++.+|||+|||+|..+             ..++.                   ...+++++|+++.+.
T Consensus        17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT-------------~~L~~-------------------~~~~v~aIE~D~~l~   64 (245)
T d1yuba_          17 VLNQIIKQLNLKETDTVYEIGTGKGHLT-------------TKLAK-------------------ISKQVTSIELDSHLF   64 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCS-------------HHHHH-------------------HSSEEEESSSSCSSS
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCccHHH-------------HHHHh-------------------hcCceeEeeecccch
Confidence            3567888888889999999999999999             55555                   456899999999888


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI  178 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l  178 (241)
                      +.++++..                             ..++++++++|+...+++....+.|+++.-.
T Consensus        65 ~~l~~~~~-----------------------------~~~n~~ii~~D~l~~~~~~~~~~~vv~NLPY  103 (245)
T d1yuba_          65 NLSSEKLK-----------------------------LNTRVTLIHQDILQFQFPNKQRYKIVGNIPY  103 (245)
T ss_dssp             SSSSCTTT-----------------------------TCSEEEECCSCCTTTTCCCSSEEEEEEECCS
T ss_pred             hhhhhhhh-----------------------------hccchhhhhhhhhccccccceeeeEeeeeeh
Confidence            77655443                             1147999999999988877777777765544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=1e-05  Score=69.69  Aligned_cols=132  Identities=17%  Similarity=0.240  Sum_probs=84.6

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||.+|+|.|..+             ..++.        .         ....+++++|+++..++.+++.....  
T Consensus        77 ~pk~VLiiG~G~G~~~-------------~~ll~--------~---------~~~~~v~~VEiD~~Vi~~a~~~f~~~--  124 (312)
T d1uira_          77 EPKRVLIVGGGEGATL-------------REVLK--------H---------PTVEKAVMVDIDGELVEVAKRHMPEW--  124 (312)
T ss_dssp             CCCEEEEEECTTSHHH-------------HHHTT--------S---------TTCCEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CcceEEEeCCCchHHH-------------HHHHh--------c---------CCcceEEEecCCHHHHHHHHhcCccc--
Confidence            3458999999999887             44332        1         13568999999999999998765310  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeeh--hh--ccc-c--HHHHHHHHHHh
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFG--IR--NVT-R--IDKALSEAYRV  194 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~--l~--~~~-~--~~~~l~~~~~~  194 (241)
                                          .......++++++.+|+... ...+++||+|++-..  ..  ... .  -..+++.+++.
T Consensus       125 --------------------~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~  184 (312)
T d1uira_         125 --------------------HQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAH  184 (312)
T ss_dssp             --------------------HTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHT
T ss_pred             --------------------ccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHh
Confidence                                01111235889999997763 223568999996432  11  111 1  25789999999


Q ss_pred             ccCCcEEEEEe----cCH----HHHHHHHHHCCCceEEEEE
Q psy1420         195 LKPGGRFLCLE----FSH----EEFKSMIESAGFQYVTYEN  227 (241)
Q Consensus       195 LkpgG~l~i~~----~~~----~~~~~~l~~~Gf~~~~~~~  227 (241)
                      |+|||.+++..    ...    ..+.+.+++. |..+....
T Consensus       185 L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~~y~  224 (312)
T d1uira_         185 LNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYK  224 (312)
T ss_dssp             EEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEE
T ss_pred             cCCCceEEEecCCcccchHHHHHHHHHHHHHh-CceEEEEE
Confidence            99999998743    122    2333445555 76666544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.02  E-value=1.7e-05  Score=67.07  Aligned_cols=132  Identities=11%  Similarity=0.127  Sum_probs=87.6

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||-+|.|.|..+             ..++.        .         ....+++.+|+++..++.+++.....  
T Consensus        75 ~p~~vLiiGgG~G~~~-------------~~~l~--------~---------~~~~~i~~VEID~~Vi~~a~~~~~~~--  122 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVI-------------REILK--------H---------PSVKKATLVDIDGKVIEYSKKFLPSI--  122 (274)
T ss_dssp             SCCEEEEESCTTCHHH-------------HHHTT--------C---------TTCSEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CcceEEecCCCCcHHH-------------HHHHh--------c---------CCcceEEEecCCHHHHHHHHHhChhh--
Confidence            4459999999999988             44443        1         13568999999999999998765310  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhcc--c--cHHHHHHHHHHhccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNV--T--RIDKALSEAYRVLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~--~--~~~~~l~~~~~~Lkp  197 (241)
                                           ......++++++..|+... ...+++||+|+.-..-..-  .  --..+++.+++.|+|
T Consensus       123 ---------------------~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~  181 (274)
T d1iy9a_         123 ---------------------AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKE  181 (274)
T ss_dssp             ---------------------HTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEE
T ss_pred             ---------------------cccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCC
Confidence                                 1112336899999996652 2235689999865321110  1  125889999999999


Q ss_pred             CcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420         198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      ||.++....+.       ..+.+.+++. |..+.....
T Consensus       182 ~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~v~~y~~  218 (274)
T d1iy9a_         182 DGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYTA  218 (274)
T ss_dssp             EEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEE
T ss_pred             CceEEEecCCccccHHHHHHHHHhhhhh-cCceEEEEE
Confidence            99998764333       4455555555 666655543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=6.2e-06  Score=66.13  Aligned_cols=123  Identities=15%  Similarity=0.138  Sum_probs=78.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.|.+.+...++.+|||.|||+|.+.             ..+...+.                ....++++|+++...
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl-------------~~~~~~~~----------------~~~~i~g~ei~~~~~   57 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFL-------------RAFREAHG----------------TAYRFVGVEIDPKAL   57 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHH-------------HHHHHHHC----------------SCSEEEEEESCTTTC
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHH-------------HHHHHhcc----------------ccceEEeeecCHHHH
Confidence            4566778888888999999999999876             33322100                245689999987643


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc---------
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---------  181 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~---------  181 (241)
                      ..+                                    .....++.|...... ..+||+|+++......         
T Consensus        58 ~~~------------------------------------~~~~~~~~~~~~~~~-~~~fd~ii~npP~~~~~~~~~~~~~  100 (223)
T d2ih2a1          58 DLP------------------------------------PWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIH  100 (223)
T ss_dssp             CCC------------------------------------TTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBC
T ss_pred             hhc------------------------------------ccceeeeeehhcccc-ccccceecccCccccccccccccch
Confidence            221                                    124455666554432 4578888876432110         


Q ss_pred             -------------------c-cHHHHHHHHHHhccCCcEEEEEecCH-------HHHHHHHHHCC
Q psy1420         182 -------------------T-RIDKALSEAYRVLKPGGRFLCLEFSH-------EEFKSMIESAG  219 (241)
Q Consensus       182 -------------------~-~~~~~l~~~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~G  219 (241)
                                         . -...++..+.+.|+|||++.++....       +.+++.+.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~  165 (223)
T d2ih2a1         101 VFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG  165 (223)
T ss_dssp             CCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred             hhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcC
Confidence                               0 12356788889999999988765333       67777776664

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.00  E-value=1.6e-05  Score=68.44  Aligned_cols=143  Identities=12%  Similarity=0.084  Sum_probs=89.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||.+|.|.|..+             ..++.        .         ....+++.+|+++..++.+++-....  
T Consensus       106 ~pk~VLIiGgG~G~~~-------------rellk--------~---------~~v~~v~~VEID~~Vv~~a~~~~~~~--  153 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGIL-------------REVLK--------H---------ESVEKVTMCEIDEMVIDVAKKFLPGM--  153 (312)
T ss_dssp             SCCEEEEESCTTSHHH-------------HHHTT--------C---------TTCCEEEEECSCHHHHHHHHHHCTTT--
T ss_pred             CCCeEEEeCCCchHHH-------------HHHHH--------c---------CCcceEEEEcccHHHHHHHHhhchhh--
Confidence            3458999999999988             44443        1         13468999999999999998765411  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc----cHHHHHHHHHHhccC
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKP  197 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~----~~~~~l~~~~~~Lkp  197 (241)
                                           ......++++++..|+... ....++||+|++-..-...+    --..+++.+++.|+|
T Consensus       154 ---------------------~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~  212 (312)
T d2b2ca1         154 ---------------------SCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKE  212 (312)
T ss_dssp             ---------------------SGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEE
T ss_pred             ---------------------ccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCC
Confidence                                 0112236889998886653 22356899999643221111    125788999999999


Q ss_pred             CcEEEEEecCH-------HHHHHHHHHCCCceEEEEEec-----CceeEEEeee
Q psy1420         198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYENLT-----FGVVAIHSGF  239 (241)
Q Consensus       198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~~-----~~~~~~~~~~  239 (241)
                      ||.++...-+.       ..+.+.+++. |..+......     .|..+...|.
T Consensus       213 ~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y~~~vPtyp~G~w~f~~aS  265 (312)
T d2b2ca1         213 DGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQSIVSTYPSGSMGYLICA  265 (312)
T ss_dssp             EEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEEEE
T ss_pred             CcEEEEecCChHHhHHHHHHHHHHhhhc-cceEEEeeeccCCcCCccceeeEEE
Confidence            99998864333       3344444454 7766655442     2555555554

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.2e-05  Score=66.68  Aligned_cols=144  Identities=15%  Similarity=0.167  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      ....+||-+|.|.|..+             ..++.        .         ....+++.+|+++..++.+++..... 
T Consensus        77 ~~pk~vLiiGgG~G~~~-------------~~~l~--------~---------~~~~~v~~vEiD~~Vv~~a~~~~~~~-  125 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVL-------------REVVK--------H---------PSVESVVQCEIDEDVIQVSKKFLPGM-  125 (285)
T ss_dssp             SSCCEEEEEECTTSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH-
T ss_pred             cCcCeEEEeCCCchHHH-------------HHHHH--------c---------CCcceeeeccCCHHHHHHHHhhchhh-
Confidence            34458999999999888             44443        1         13568999999999999998765310 


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhcc-c---cHHHHHHHHHHhcc
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNV-T---RIDKALSEAYRVLK  196 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~-~---~~~~~l~~~~~~Lk  196 (241)
                                            .....+++++++..|+... ....++||+|++-..-... +   --..+++.+++.|+
T Consensus       126 ----------------------~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~  183 (285)
T d2o07a1         126 ----------------------AIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALK  183 (285)
T ss_dssp             ----------------------HGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEE
T ss_pred             ----------------------ccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcC
Confidence                                  0112236899999996643 2235689999975321111 1   11378899999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEec-----CceeEEEeee
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENLT-----FGVVAIHSGF  239 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~~-----~~~~~~~~~~  239 (241)
                      |||.+++...+.       ..+.+.+++. |..+......     .|..+...|.
T Consensus       184 ~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~vP~~~~g~w~f~~aS  237 (285)
T d2o07a1         184 EDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAYCTIPTYPSGQIGFMLCS  237 (285)
T ss_dssp             EEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEEEE
T ss_pred             CCCeEEEeccchhhhHHHHHHHHHHHHhc-CCeeeEEeeeeeecCCCCeEEEEEE
Confidence            999998865443       3444555555 7777654431     3455555544

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.97  E-value=1.9e-05  Score=67.35  Aligned_cols=144  Identities=17%  Similarity=0.188  Sum_probs=92.0

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ...+||-+|.|.|..+             +.++.        .         ....++..+|+++..++.+++.....  
T Consensus        80 ~pk~VLiiGgG~G~~~-------------r~~l~--------~---------~~~~~i~~VEiD~~Vi~~~~~~f~~~--  127 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVL-------------REVAR--------H---------ASIEQIDMCEIDKMVVDVSKQFFPDV--  127 (290)
T ss_dssp             CCCEEEEETCSSSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH--
T ss_pred             CCcceEEecCCchHHH-------------HHHHh--------c---------ccceeeEEecCCHHHHHHHHHhchhh--
Confidence            3458999999999988             44443        1         13457999999999999998765310  


Q ss_pred             ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhc-cc---cHHHHHHHHHHhcc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRN-VT---RIDKALSEAYRVLK  196 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~-~~---~~~~~l~~~~~~Lk  196 (241)
                                           .....+++++++..|+...  ...+++||+|+.-..=.. .+   --..+++.+++.|+
T Consensus       128 ---------------------~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~  186 (290)
T d1xj5a_         128 ---------------------AIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALR  186 (290)
T ss_dssp             ---------------------HGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEE
T ss_pred             ---------------------hccccCCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcC
Confidence                                 1112236889999986543  233468999996432111 11   12578999999999


Q ss_pred             CCcEEEEEecCH-------HHHHHHHHHCCCceEEEE--Ee-cC--ceeEEEeee
Q psy1420         197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYE--NL-TF--GVVAIHSGF  239 (241)
Q Consensus       197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~--~~-~~--~~~~~~~~~  239 (241)
                      |||.+++...+.       ..+.+.+++.....+.+.  .. ++  |..+...|.
T Consensus       187 ~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as  241 (290)
T d1xj5a_         187 PGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCS  241 (290)
T ss_dssp             EEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEe
Confidence            999999865443       445555666655544432  22 22  555555443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.8e-05  Score=61.64  Aligned_cols=116  Identities=19%  Similarity=0.236  Sum_probs=74.6

Q ss_pred             CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420          42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP  121 (241)
Q Consensus        42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~  121 (241)
                      +++.+|||+||++|.|+          ||......                   ....+.++|+.+.         .   
T Consensus        21 k~~~~vlDLg~aPGgw~----------q~~~~~~~-------------------~~~~v~~vDl~~~---------~---   59 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWS----------QYVVTQIG-------------------GKGRIIACDLLPM---------D---   59 (180)
T ss_dssp             CTTCEEEEESCTTCHHH----------HHHHHHHC-------------------TTCEEEEEESSCC---------C---
T ss_pred             CCCCeEEEEeccCCcce----------EEEEeecc-------------------ccceEEEeecccc---------c---
Confidence            68889999999999999          44443333                   3457888886441         1   


Q ss_pred             CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeehhhccc-----------
Q psy1420         122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVT-----------  182 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~l~~~~-----------  182 (241)
                                              .+  ++..++.+|+....        ....++|+|++-.+.....           
T Consensus        60 ------------------------~i--~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~  113 (180)
T d1ej0a_          60 ------------------------PI--VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMY  113 (180)
T ss_dssp             ------------------------CC--TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHH
T ss_pred             ------------------------cc--CCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHH
Confidence                                    11  25667777766532        2346799999875543211           


Q ss_pred             cHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEE
Q psy1420         183 RIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTY  225 (241)
Q Consensus       183 ~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~  225 (241)
                      -...++.-+.++|++||.+++-.|..   .++...++.. |+-+.+
T Consensus       114 L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~-F~~V~~  158 (180)
T d1ej0a_         114 LVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKV  158 (180)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEE
T ss_pred             HHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhh-cCEEEE
Confidence            12467788889999999999977765   4444444433 544433

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.83  E-value=2.6e-05  Score=61.77  Aligned_cols=138  Identities=13%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             HHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420          31 WKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR  109 (241)
Q Consensus        31 ~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~  109 (241)
                      .++.+...+.. -.+.+|||+-||||..+             ...+.                  ....+++.+|.+..+
T Consensus        30 vrealFn~l~~~~~~~~vLDlFaGsG~~g-------------lEalS------------------RGA~~v~fVE~~~~a   78 (183)
T d2ifta1          30 VKETLFNWLMPYIHQSECLDGFAGSGSLG-------------FEALS------------------RQAKKVTFLELDKTV   78 (183)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHH-------------HHHHH------------------TTCSEEEEECSCHHH
T ss_pred             HHHHHHHHhhhhcccceEeecccCcccee-------------eeeee------------------ecceeeEEeecccch
Confidence            34444444432 35679999999999998             44433                  134589999999999


Q ss_pred             HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC---CCCCCCceeEEeeeehhhccccHHH
Q psy1420         110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE---LPIESDSYSAYTIAFGIRNVTRIDK  186 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~V~~~~~l~~~~~~~~  186 (241)
                      ++.++++++                         +.+..+....+...|...   ......+||+|++.--.. .....+
T Consensus        79 ~~~ik~Ni~-------------------------~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~-~~~~~~  132 (183)
T d2ifta1          79 ANQLKKNLQ-------------------------TLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-FNLAEQ  132 (183)
T ss_dssp             HHHHHHHHH-------------------------HTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-SCHHHH
T ss_pred             hhhHhhHHh-------------------------hhcccccccccccccccccccccccCCcccEEEechhHh-hhhHHH
Confidence            999999998                         555543456666666432   223345799998743222 233456


Q ss_pred             HHHHHHH--hccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420         187 ALSEAYR--VLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       187 ~l~~~~~--~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .+..+..  +|+++|.+++-......   +....+|.+.+....
T Consensus       133 ~l~~l~~~~~L~~~~liiiE~~~~~~---~~~~~~~~~~k~kky  173 (183)
T d2ifta1         133 AISLLCENNWLKPNALIYVETEKDKP---LITPENWTLLKEKTT  173 (183)
T ss_dssp             HHHHHHHTTCEEEEEEEEEEEESSSC---CCCCTTEEEEEEEEE
T ss_pred             HHHHHHHhCCcCCCcEEEEEecCCCC---CCCCCCcEEEEEEec
Confidence            6776654  79999988874322211   112356777665544

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.00014  Score=61.34  Aligned_cols=133  Identities=14%  Similarity=0.172  Sum_probs=88.6

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      ....+.+.++.+|||+.+|+|.=+             ..++.    +.             ....+++.|.++..++...
T Consensus        94 ~~~~L~~~~g~~vLD~CAaPGgKt-------------~~la~----l~-------------~~~~i~a~d~~~~R~~~l~  143 (284)
T d1sqga2          94 CMTWLAPQNGEHILDLCAAPGGKT-------------THILE----VA-------------PEAQVVAVDIDEQRLSRVY  143 (284)
T ss_dssp             HHHHHCCCTTCEEEEESCTTCHHH-------------HHHHH----HC-------------TTCEEEEEESSTTTHHHHH
T ss_pred             cccccCccccceeEeccCccccch-------------hhhhh----hh-------------hhhhhhhhhcchhhhhhHh
Confidence            344567889999999999999987             44443    11             2467999999999999999


Q ss_pred             HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeee------ehhhcccc----
Q psy1420         115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIA------FGIRNVTR----  183 (241)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~------~~l~~~~~----  183 (241)
                      .++.                         +.++.  .+.....+.... ......||.|++-      ..++.-++    
T Consensus       144 ~~~~-------------------------r~g~~--~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~  196 (284)
T d1sqga2         144 DNLK-------------------------RLGMK--ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWL  196 (284)
T ss_dssp             HHHH-------------------------HTTCC--CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHH
T ss_pred             hhhh-------------------------ccccc--ceeeeccccccchhcccccccEEEEeccccccCccccccchhhc
Confidence            9988                         55554  333333333222 1234679999942      22221111    


Q ss_pred             ------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEE
Q psy1420         184 ------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVT  224 (241)
Q Consensus       184 ------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~  224 (241)
                                  -.+.|+.+.+.|||||+|+-++-+-      +.++.++++. +|+.++
T Consensus       197 ~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~~  256 (284)
T d1sqga2         197 RRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE  256 (284)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEEec
Confidence                        1477888899999999998876554      5566677764 466554

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.0003  Score=59.56  Aligned_cols=127  Identities=9%  Similarity=0.072  Sum_probs=82.2

Q ss_pred             HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ...+.+.++.+|||+++|+|.-+             .+++..++                ....+++.|+++..++.+++
T Consensus        87 ~~~L~~~~g~~vLD~cAapGgKt-------------~~la~l~~----------------~~~~i~a~d~~~~R~~~l~~  137 (293)
T d2b9ea1          87 AMLLDPPPGSHVIDACAAPGNKT-------------SHLAALLK----------------NQGKIFAFDLDAKRLASMAT  137 (293)
T ss_dssp             HHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHHT----------------TCSEEEEEESCHHHHHHHHH
T ss_pred             ccccCCCccceEEecccchhhHH-------------HHHHHHhc----------------CCceEeeecCCHHHHHHHHH
Confidence            34457789999999999999977             44444221                34679999999999999999


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeee------ehhhccc----
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIA------FGIRNVT----  182 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~------~~l~~~~----  182 (241)
                      ++.                         +.++.  ++.+...|+...+..   .++||.|++-      .+++..+    
T Consensus       138 ~l~-------------------------r~g~~--~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~  190 (293)
T d2b9ea1         138 LLA-------------------------RAGVS--CCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPG  190 (293)
T ss_dssp             HHH-------------------------HTTCC--SEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------
T ss_pred             HHH-------------------------hcCcc--ceeeeehhhhhhcccccccceeeEEeecCcccchhhhcccchhhc
Confidence            988                         66665  677888887765322   2579999843      1111111    


Q ss_pred             -----c--H-------HHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC
Q psy1420         183 -----R--I-------DKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG  219 (241)
Q Consensus       183 -----~--~-------~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G  219 (241)
                           +  .       .+.+..+. .++|||.|+-++-+-      +-++..+++..
T Consensus       191 ~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~  246 (293)
T d2b9ea1         191 AGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQNP  246 (293)
T ss_dssp             ------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             cCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHhCC
Confidence                 0  0       12334444 478999988766544      44555665543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00016  Score=61.04  Aligned_cols=86  Identities=10%  Similarity=0.167  Sum_probs=65.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+.+..+..++..|||+|+|+|..+             ..++.                   ...+++++|+++.+.
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT-------------~~Ll~-------------------~~~~v~aiE~D~~l~   56 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMT-------------VKLLE-------------------KAKKVVACELDPRLV   56 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTH-------------HHHHH-------------------HSSEEEEEESCHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHH-------------HHHHh-------------------cCCcEEEEEEccchh
Confidence            4566777778888899999999999999             66665                   456899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF  176 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~  176 (241)
                      +.+.+...                         ..... ++++++.+|+.....+.  .+.|+.+.
T Consensus        57 ~~L~~~~~-------------------------~~~~~-~~~~~i~~D~l~~~~~~--~~~vV~NL   94 (278)
T d1zq9a1          57 AELHKRVQ-------------------------GTPVA-SKLQVLVGDVLKTDLPF--FDTCVANL   94 (278)
T ss_dssp             HHHHHHHT-------------------------TSTTG-GGEEEEESCTTTSCCCC--CSEEEEEC
T ss_pred             HHHHHHHh-------------------------hhccc-cchhhhHHHHhhhhhhh--hhhhhcch
Confidence            99988876                         22221 47899999998876542  45666543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00011  Score=61.06  Aligned_cols=72  Identities=14%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      ..+.+.+.+...++..|||+|||+|..+             ..++.                   ...+++++|+++.+.
T Consensus         9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT-------------~~Ll~-------------------~~~~v~aiEiD~~l~   56 (252)
T d1qyra_           9 VIDSIVSAINPQKGQAMVEIGPGLAALT-------------EPVGE-------------------RLDQLTVIELDRDLA   56 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTH-------------HHHHT-------------------TCSCEEEECCCHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHH-------------HHHHc-------------------cCCceEEEEeccchh
Confidence            4566777778888999999999999999             55555                   456899999999999


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP  163 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  163 (241)
                      +.++....                             ..+++.++.+|+...+
T Consensus        57 ~~L~~~~~-----------------------------~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_          57 ARLQTHPF-----------------------------LGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHTCTT-----------------------------TGGGEEEECSCGGGCC
T ss_pred             HHHHHHhh-----------------------------hccchhHHhhhhhhhc
Confidence            99876433                             1147899999998764

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.39  E-value=0.00054  Score=59.71  Aligned_cols=76  Identities=13%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             eEEecccCCCCCCCCceeEEeeeehhhccc---------------------------------cHHHHHHHHHHhccCCc
Q psy1420         153 RFLEANAEELPIESDSYSAYTIAFGIRNVT---------------------------------RIDKALSEAYRVLKPGG  199 (241)
Q Consensus       153 ~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~---------------------------------~~~~~l~~~~~~LkpgG  199 (241)
                      .-+.+.+..-=+|.++.++++++.++||+.                                 |...+|+.=.+-|+|||
T Consensus       124 ~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG  203 (359)
T d1m6ex_         124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG  203 (359)
T ss_dssp             EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred             EecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            334555555446788999999999998753                                 22457777778899999


Q ss_pred             EEEEEecCH-----------------------------------------------HHHHHHHHHCC-CceEEEEEe
Q psy1420         200 RFLCLEFSH-----------------------------------------------EEFKSMIESAG-FQYVTYENL  228 (241)
Q Consensus       200 ~l~i~~~~~-----------------------------------------------~~~~~~l~~~G-f~~~~~~~~  228 (241)
                      +++++.++.                                               +|++..+++.| |.+.+++..
T Consensus       204 ~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~  280 (359)
T d1m6ex_         204 RMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS  280 (359)
T ss_dssp             EEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred             EEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEee
Confidence            999865332                                               99999999888 777777643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00032  Score=63.87  Aligned_cols=158  Identities=15%  Similarity=0.045  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhh-----hcccCCCceee
Q psy1420          29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYL-----VESIRQFPNQI  103 (241)
Q Consensus        29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  103 (241)
                      +...+.|.+.+.+.++.+|+|..||+|.+.             .....    .+.........+     .......++|.
T Consensus       150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL-------------~~a~~----~l~~~~~~~~~~~~~~~~~~~~~~~~G~  212 (524)
T d2ar0a1         150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFL-------------IEADR----YVKSQTNDLDDLDGDTQDFQIHRAFIGL  212 (524)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHH-------------HHHHH----HHHTTTTTTTTSCHHHHHHHHHTSEEEE
T ss_pred             cchhHhhhhcccCccchhhcchhhhcchhh-------------HHHHH----HHHHhcCcccccchhHHHHHHHhhhhhh
Confidence            344677888888888999999999999976             33333    111110000000     00012368999


Q ss_pred             cCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCC-CCCCceeEEeeeehhh
Q psy1420         104 DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELP-IESDSYSAYTIAFGIR  179 (241)
Q Consensus       104 D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~  179 (241)
                      |+++.+...+..++.-+                         +...   ....+...+....+ ....+||+|+++--+.
T Consensus       213 E~~~~~~~la~~nl~l~-------------------------~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         213 ELVPGTRRLALMNCLLH-------------------------DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG  267 (524)
T ss_dssp             ESCHHHHHHHHHHHHTT-------------------------TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCT
T ss_pred             ccCHHHHHHHHHHHHhh-------------------------cccccccccchhhhhhhhhhcccccccceeEEecCCcc
Confidence            99999999888776511                         1110   01122233322211 1235799998763321


Q ss_pred             --ccc------------cHHHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEec
Q psy1420         180 --NVT------------RIDKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENLT  229 (241)
Q Consensus       180 --~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~~  229 (241)
                        ...            ..-.++..+.+.|+|||++.++....        ..+++.|-+.+ .+..+..+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~-~i~aII~LP  338 (524)
T d2ar0a1         268 SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-HLHTILRLP  338 (524)
T ss_dssp             TCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE-EEEEEEECC
T ss_pred             ccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC-CceEEEECC
Confidence              111            12358999999999999988765332        56777776664 455555554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.33  E-value=6.2e-05  Score=62.01  Aligned_cols=55  Identities=11%  Similarity=0.117  Sum_probs=34.2

Q ss_pred             CCeeEEecccCCCC----CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420         150 PRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       150 ~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                      .+++++++|.....    .....+|.|+.-.. |.-......+ ...+.|+|||++++-+.
T Consensus       129 ~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         129 ENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             TTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             cceeeeecccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            46888888865442    22345788776543 3322222333 35689999999998764

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.98  E-value=0.0006  Score=56.49  Aligned_cols=50  Identities=12%  Similarity=0.108  Sum_probs=32.6

Q ss_pred             CCceeEEeeeehhhc----c--ccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHH
Q psy1420         166 SDSYSAYTIAFGIRN----V--TRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMI  215 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~----~--~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l  215 (241)
                      ....|+|+|--+-..    +  ....+.|+.+.+.|+|||-+++-.+.+  .++.+.|
T Consensus       130 ~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~l  187 (257)
T d2p41a1         130 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKM  187 (257)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHH
T ss_pred             CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHH
Confidence            467899998654321    1  112367788889999999998876663  4444433

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.65  E-value=0.00094  Score=58.43  Aligned_cols=116  Identities=13%  Similarity=0.010  Sum_probs=74.9

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI  122 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~  122 (241)
                      ++.+|||..||+|..+             .+++.                 |....++++.|+|+..++.+++++..   
T Consensus        45 ~~~~vLD~~sasG~rs-------------iRya~-----------------E~~~~~V~~nDis~~A~~~i~~N~~l---   91 (375)
T d2dula1          45 NPKIVLDALSATGIRG-------------IRFAL-----------------ETPAEEVWLNDISEDAYELMKRNVML---   91 (375)
T ss_dssp             CCSEEEESSCTTSHHH-------------HHHHH-----------------HSSCSEEEEEESCHHHHHHHHHHHHH---
T ss_pred             CCCEEEEcCCCccHHH-------------HHHHH-----------------hCCCCEEEEecCCHHHHHHHHHHHHh---
Confidence            4669999999999988             44432                 11345799999999999999999871   


Q ss_pred             ccccccccceecceeeeeecc--ccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420         123 ESDSYSAYTIAFGIRNVTRID--KIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG  199 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG  199 (241)
                                 ++..+.....  ........+.+.+.|+..... ....||+|..-    -+..+..+|+.+.+.++.||
T Consensus        92 -----------N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~G  156 (375)
T d2dula1          92 -----------NFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRG  156 (375)
T ss_dssp             -----------HCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEE
T ss_pred             -----------cCccccccccccccccccceeEeehhhhhhhhHhhcCcCCcccCC----CCCCcHHHHHHHHHHhccCC
Confidence                       1111111000  000000235566666544321 24579988752    34567889999999999999


Q ss_pred             EEEEEec
Q psy1420         200 RFLCLEF  206 (241)
Q Consensus       200 ~l~i~~~  206 (241)
                      .|.++..
T Consensus       157 ll~vTaT  163 (375)
T d2dula1         157 ILGVTAT  163 (375)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9998653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.83  E-value=0.029  Score=42.92  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=61.1

Q ss_pred             hhcCCCCCCeEEEEecCC-CcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGT-DPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      +..+.+++.+|+-+|||. |..+             .+++..+                 ....++++|.++..++.+++
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~-------------~q~ak~~-----------------Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMG-------------IAGAKLR-----------------GAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHH-------------HHHHHTT-----------------TCSCEEEECCCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEcCCcchhhh-------------hhhhhcc-----------------cccccccccchhhhHHHHHh
Confidence            456778999999998865 4433             3333311                 12469999999998888875


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-----C-CCCCceeEEeeeehhhccccHHHHHH
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-----P-IESDSYSAYTIAFGIRNVTRIDKALS  189 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~V~~~~~l~~~~~~~~~l~  189 (241)
                      .-.                                 ..++...-...     . .....+|+|+.+-+-      ...++
T Consensus        71 lGa---------------------------------~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~------~~~~~  111 (174)
T d1jqba2          71 YGA---------------------------------TDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG------SETLS  111 (174)
T ss_dssp             HTC---------------------------------SEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC------TTHHH
T ss_pred             hCc---------------------------------cccccccchhHHHHHHHHhhccCcceEEEccCC------HHHHH
Confidence            421                                 11111111100     0 123469999864432      23567


Q ss_pred             HHHHhccCCcEEEEEe
Q psy1420         190 EAYRVLKPGGRFLCLE  205 (241)
Q Consensus       190 ~~~~~LkpgG~l~i~~  205 (241)
                      ...++++|+|++++.-
T Consensus       112 ~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         112 QAVKMVKPGGIISNIN  127 (174)
T ss_dssp             HHHHHEEEEEEEEECC
T ss_pred             HHHHHHhcCCEEEEEe
Confidence            7789999999998854

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.0087  Score=45.51  Aligned_cols=49  Identities=12%  Similarity=-0.054  Sum_probs=33.3

Q ss_pred             hhcCCCCCCeEEEEecCC-CcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGT-DPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      ...+.+++.+|+.+|+|+ |..+             .+++.                  ....+++++|.++..++.+++
T Consensus        21 ~~~~~~~g~~vlI~GaG~vG~~a-------------~q~ak------------------~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          21 VRNGCGPGKKVGIVGLGGIGSMG-------------TLISK------------------AMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             HHTTCSTTCEEEEECCSHHHHHH-------------HHHHH------------------HHTCEEEEEESSSTTHHHHHH
T ss_pred             HHhCcCCCCEEEEECCCCcchhH-------------HHHhh------------------hccccccccccchhHHHHhhc
Confidence            345678999999998762 2222             33332                  135678999999998888775


Q ss_pred             H
Q psy1420         116 N  116 (241)
Q Consensus       116 ~  116 (241)
                      .
T Consensus        70 l   70 (168)
T d1piwa2          70 M   70 (168)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.13  E-value=0.058  Score=40.42  Aligned_cols=34  Identities=15%  Similarity=0.269  Sum_probs=24.8

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                      ..+|+|+.+-+      -...++.+.++++|+|++++.-.
T Consensus        97 ~g~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          97 DLPNVTIDCSG------NEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             SCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             cCCceeeecCC------ChHHHHHHHHHHhcCCceEEEec
Confidence            46899885432      23567888899999999987643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.76  E-value=0.049  Score=42.43  Aligned_cols=105  Identities=13%  Similarity=0.002  Sum_probs=64.2

Q ss_pred             hhcCCCCCCeEEEEecCCCc-chhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDP-LANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA  115 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~  115 (241)
                      +..+.+++.+||.+|||... .+             ..++.    .   .          ....++++|.++..++.+++
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a-------------~~~ak----~---~----------ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAA-------------AASAR----L---L----------GAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHH-------------HHHHH----H---T----------TCSEEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECcCHHHHHH-------------HHHHH----h---h----------cccceeeecccchhhHhhhh
Confidence            44567899999999997632 22             22222    1   0          24579999999999988875


Q ss_pred             HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEe---ccc----CCCCCCCCceeEEeeeehhhc--------
Q psy1420         116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE---ANA----EELPIESDSYSAYTIAFGIRN--------  180 (241)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~----~~~~~~~~~~D~V~~~~~l~~--------  180 (241)
                      .-.                             .    .++.   .++    .+. .....+|+++.+-+...        
T Consensus        69 ~Ga-----------------------------~----~~~~~~~~~~~~~i~~~-t~g~g~D~vid~vG~~~~~~~~~~~  114 (195)
T d1kola2          69 QGF-----------------------------E----IADLSLDTPLHEQIAAL-LGEPEVDCAVDAVGFEARGHGHEGA  114 (195)
T ss_dssp             TTC-----------------------------E----EEETTSSSCHHHHHHHH-HSSSCEEEEEECCCTTCBCSSTTGG
T ss_pred             ccc-----------------------------c----EEEeCCCcCHHHHHHHH-hCCCCcEEEEECccccccCCcccce
Confidence            422                             0    0110   000    000 12346888886544321        


Q ss_pred             -cccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         181 -VTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       181 -~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                       .......++.+.+.++|||++.+.-
T Consensus       115 ~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         115 KHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             GSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             eecCcHHHHHHHHHHHhcCCEEEEee
Confidence             1224578999999999999998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.70  E-value=0.13  Score=39.17  Aligned_cols=103  Identities=15%  Similarity=0.042  Sum_probs=64.1

Q ss_pred             HHhhcCCCCCCeEEEEecCC-CcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGT-DPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL  113 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~  113 (241)
                      +.+....+++.+|+-+|||. |..+             .+++..+                 ....++.+|.++..++.+
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a-------------~~~ak~~-----------------Ga~~Vi~~d~~~~r~~~a   69 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSA-------------IIGCKIA-----------------GASRIIAIDINGEKFPKA   69 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHH-------------HHHHHHT-----------------TCSEEEEECSCGGGHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHH-------------HHHHHHh-----------------CCceeeeeccchHHHHHH
Confidence            44566778999999999877 4444             3444321                 234788999999988888


Q ss_pred             HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-------CCCCceeEEeeeehhhccccHHH
Q psy1420         114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-------IESDSYSAYTIAFGIRNVTRIDK  186 (241)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D~V~~~~~l~~~~~~~~  186 (241)
                      ++.-.                             .    .++.....+..       .....+|+|+-+-+      -..
T Consensus        70 ~~~Ga-----------------------------~----~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G------~~~  110 (174)
T d1e3ia2          70 KALGA-----------------------------T----DCLNPRELDKPVQDVITELTAGGVDYSLDCAG------TAQ  110 (174)
T ss_dssp             HHTTC-----------------------------S----EEECGGGCSSCHHHHHHHHHTSCBSEEEESSC------CHH
T ss_pred             HHhCC-----------------------------C----cccCCccchhhhhhhHhhhhcCCCcEEEEecc------cch
Confidence            76422                             1    11111111000       12356899985432      235


Q ss_pred             HHHHHHHhccCC-cEEEEEec
Q psy1420         187 ALSEAYRVLKPG-GRFLCLEF  206 (241)
Q Consensus       187 ~l~~~~~~Lkpg-G~l~i~~~  206 (241)
                      .++...+.++|| |++++.-.
T Consensus       111 ~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2         111 TLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HHHHHHHTBCTTTCEEEECCC
T ss_pred             HHHHHHHHhhcCCeEEEecCC
Confidence            788899999996 99987643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.24  E-value=0.069  Score=40.62  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=23.9

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ..+|+|+.+-+-      ...++...+.|+|||++++.-
T Consensus        99 ~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          99 RGADFILEATGD------SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEe
Confidence            468999854322      235677889999999988754

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.83  E-value=0.11  Score=43.65  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=35.3

Q ss_pred             CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420          43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE  118 (241)
Q Consensus        43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~  118 (241)
                      .+..|||+|.|.|.++             ..++.    .  .           ...+++++|+++...+.......
T Consensus        43 ~~~~VlEIGPG~G~LT-------------~~Ll~----~--~-----------~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQS-------------AIFYN----K--Y-----------CPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             TTCEEEEESCTTCHHH-------------HHHHH----H--H-----------CCSEEEEECCCHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCHHH-------------HHHHh----c--C-----------CCCEEEEEECCHHHHHHHHHhcc
Confidence            5668999999999999             55554    0  0           12479999999999998876654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.07  E-value=0.47  Score=35.47  Aligned_cols=105  Identities=14%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      ..+.+..+.+++.+|+-+|+|.-...            ..+++..+                 ....+..+|.++..++.
T Consensus        18 ~a~~~~~~~~~g~~VlI~G~G~iG~~------------~~~~ak~~-----------------g~~~v~~~~~~~~k~~~   68 (174)
T d1f8fa2          18 GACINALKVTPASSFVTWGAGAVGLS------------ALLAAKVC-----------------GASIIIAVDIVESRLEL   68 (174)
T ss_dssp             HHHHTTTCCCTTCEEEEESCSHHHHH------------HHHHHHHH-----------------TCSEEEEEESCHHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCHHHhh------------hhhccccc-----------------ccceeeeeccHHHHHHH
Confidence            34456667889999999987642222            02222211                 23467888999988888


Q ss_pred             HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-----CCCCCceeEEeeeehhhccccHHHH
Q psy1420         113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-----PIESDSYSAYTIAFGIRNVTRIDKA  187 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~V~~~~~l~~~~~~~~~  187 (241)
                      +++.-.                                 ..++..+-.+.     ...++.+|+|+.+-+      -...
T Consensus        69 a~~~Ga---------------------------------~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G------~~~~  109 (174)
T d1f8fa2          69 AKQLGA---------------------------------THVINSKTQDPVAAIKEITDGGVNFALESTG------SPEI  109 (174)
T ss_dssp             HHHHTC---------------------------------SEEEETTTSCHHHHHHHHTTSCEEEEEECSC------CHHH
T ss_pred             HHHcCC---------------------------------eEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC------cHHH
Confidence            775422                                 11221111110     112357999985432      2356


Q ss_pred             HHHHHHhccCCcEEEEEe
Q psy1420         188 LSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       188 l~~~~~~LkpgG~l~i~~  205 (241)
                      ++.+.++++|+|++.+.-
T Consensus       110 ~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         110 LKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHHTEEEEEEEEECC
T ss_pred             HHHHHhcccCceEEEEEe
Confidence            778899999999998754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.50  E-value=0.32  Score=38.56  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=49.8

Q ss_pred             EEecccCCC--CCCCCceeEEeeeeh----hh-------ccccHHHHHHHHHHhccCCcEEEEEecCH-----------H
Q psy1420         154 FLEANAEEL--PIESDSYSAYTIAFG----IR-------NVTRIDKALSEAYRVLKPGGRFLCLEFSH-----------E  209 (241)
Q Consensus       154 ~~~~d~~~~--~~~~~~~D~V~~~~~----l~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------~  209 (241)
                      ++.+|..+.  .++++++|+|++.--    ..       +.......+.++.|+|||+|.+++.....           .
T Consensus         7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~   86 (279)
T d1eg2a_           7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS   86 (279)
T ss_dssp             EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred             EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence            444553332  355778999887521    11       12234678899999999999998753211           6


Q ss_pred             HHHHHHHHCCCceEEEEEe
Q psy1420         210 EFKSMIESAGFQYVTYENL  228 (241)
Q Consensus       210 ~~~~~l~~~Gf~~~~~~~~  228 (241)
                      .+..+++..||.......+
T Consensus        87 ~~~~~~~~~~~~~~~~i~~  105 (279)
T d1eg2a_          87 IISHMRQNSKMLLANLIIW  105 (279)
T ss_dssp             HHHHHHHHCCCEEEEEEEE
T ss_pred             HHHHHHhccCceeeeeeee
Confidence            6778889999988766554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.27  Score=36.73  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=24.3

Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~  204 (241)
                      ...+|+|+.+.+       ...++...++|+|+|+++..
T Consensus        95 ~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          95 EKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             cCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence            457999997543       24577788999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.78  E-value=0.45  Score=35.28  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=23.3

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                      +.+|.++..-+-.      ..++...++++|+|++++.-.
T Consensus        92 ~~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          92 KSFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             TCEEEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred             CCCceeeeeeecc------hhHHHHHHHHhcCCEEEEecc
Confidence            5799988654321      235567789999999988643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=0.59  Score=34.65  Aligned_cols=34  Identities=9%  Similarity=0.174  Sum_probs=25.3

Q ss_pred             CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420         167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF  206 (241)
Q Consensus       167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  206 (241)
                      ..+|+|+.+-+-      ...++.+.++++|||++++.-.
T Consensus        96 ~g~Dvvid~~G~------~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTGA------EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccCC------chhHHHHHHHhcCCCEEEEEec
Confidence            468998864432      3468888999999999988654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.91  E-value=0.3  Score=36.20  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=24.5

Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      .+.+|+|+.+.+-      ...++.+.+.++|||++++.-
T Consensus        95 ~~~~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          95 SKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECC
T ss_pred             cccchhhhccccc------chHHHhhhhhcccCCEEEEec
Confidence            3569999864332      345667789999999998764

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.76  E-value=0.69  Score=35.95  Aligned_cols=75  Identities=11%  Similarity=0.123  Sum_probs=48.2

Q ss_pred             EEecccCCC--CCCCCceeEEeeeeh--hh------------ccccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHH
Q psy1420         154 FLEANAEEL--PIESDSYSAYTIAFG--IR------------NVTRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMI  215 (241)
Q Consensus       154 ~~~~d~~~~--~~~~~~~D~V~~~~~--l~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l  215 (241)
                      +.++|..+.  .++++++|+|++.--  +.            ........+++++|+|+|||.+++.....  ..+...+
T Consensus         7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~   86 (256)
T d1g60a_           7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYL   86 (256)
T ss_dssp             EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHH
T ss_pred             EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhhhh
Confidence            455554332  244667888776521  10            11223568899999999999887654322  5677889


Q ss_pred             HHCCCceEEEEEe
Q psy1420         216 ESAGFQYVTYENL  228 (241)
Q Consensus       216 ~~~Gf~~~~~~~~  228 (241)
                      ...||.......|
T Consensus        87 ~~~g~~~~~~iiW   99 (256)
T d1g60a_          87 VSKGMIFQNWITW   99 (256)
T ss_dssp             HHTTCEEEEEEEE
T ss_pred             hcccceeeeeeEe
Confidence            9999987766554

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=87.03  E-value=1  Score=36.20  Aligned_cols=107  Identities=7%  Similarity=-0.098  Sum_probs=62.5

Q ss_pred             CCceeecCChHhHHHHH---HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-----CCCce
Q psy1420          98 QFPNQIDIPNPRLRFLE---ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-----ESDSY  169 (241)
Q Consensus        98 ~~~~~~D~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~  169 (241)
                      ..+++.|+++.+++.+.   .++.                         ..++. ..+.+...|+.....     +....
T Consensus       115 ~~i~G~D~d~~ai~~A~~~r~n~~-------------------------~Agl~-~~i~i~~~d~f~~~~~~~~~~~~~~  168 (249)
T d1o9ga_         115 SERFGKPSYLEAAQAARRLRERLT-------------------------AEGGA-LPCAIRTADVFDPRALSAVLAGSAP  168 (249)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHH-------------------------HTTSS-CCEEEEECCTTCGGGHHHHHTTCCC
T ss_pred             CCccccccCHHHHHHHHHHHHHHH-------------------------HcCCC-ceeeeeecchhccCcchhccCCCCC
Confidence            35778899888888874   4555                         56666 578888888765421     23456


Q ss_pred             eEEeee--ehhhcc-------ccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEecCceeEE
Q psy1420         170 SAYTIA--FGIRNV-------TRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVAI  235 (241)
Q Consensus       170 D~V~~~--~~l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~  235 (241)
                      ++|+++  ++-+--       ....++...+.+++.....++++.- .    +.+...|++-.+...+.-..+.+
T Consensus       169 GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it~~-~----~kl~~~~lr~~~~~~~g~r~~~~  238 (249)
T d1o9ga_         169 DVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR-S----RKIPVAPVKALERLKIGTRSAVM  238 (249)
T ss_dssp             SEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES-S----SCCCCTTSCCSEEEEETTEEEEE
T ss_pred             CEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEEEeCc-h----hhhhccCccccceeeecCcceEE
Confidence            899987  333321       1245666677788865555555432 1    22333456555555553333333

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=86.92  E-value=0.16  Score=41.12  Aligned_cols=53  Identities=13%  Similarity=0.130  Sum_probs=41.4

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +++++.. .+++..|||.=||+|+++             .....                   .+...+|+|+++...+.
T Consensus       241 ~rlI~~~-s~~gdiVlDpF~GSGTT~-------------~AA~~-------------------lgR~~Ig~El~~~y~~~  287 (320)
T d1booa_         241 EFFIRML-TEPDDLVVDIFGGSNTTG-------------LVAER-------------------ESRKWISFEMKPEYVAA  287 (320)
T ss_dssp             HHHHHHH-CCTTCEEEETTCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHH
T ss_pred             HHhhhhc-ccCCCEEEecCCCCcHHH-------------HHHHH-------------------cCCcEEEEeCCHHHHHH
Confidence            3444433 357889999999999988             43333                   46789999999999999


Q ss_pred             HHHHHh
Q psy1420         113 LEANAE  118 (241)
Q Consensus       113 ~~~~~~  118 (241)
                      +.+++.
T Consensus       288 a~~Rl~  293 (320)
T d1booa_         288 SAFRFL  293 (320)
T ss_dssp             HHGGGS
T ss_pred             HHHHHH
Confidence            998876

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=86.91  E-value=0.24  Score=38.82  Aligned_cols=53  Identities=11%  Similarity=0.020  Sum_probs=41.2

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++... ++|..|||.=+|+|+++             .....                   .+...+|+|+++...+.
T Consensus       203 ~~lI~~~s-~~gd~VlDpF~GSGTT~-------------~aa~~-------------------~~R~~ig~El~~~y~~~  249 (256)
T d1g60a_         203 ERIIRASS-NPNDLVLDCFMGSGTTA-------------IVAKK-------------------LGRNFIGCDMNAEYVNQ  249 (256)
T ss_dssp             HHHHHHHC-CTTCEEEESSCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHH
T ss_pred             HHHHHHhC-CCCCEEEECCCCchHHH-------------HHHHH-------------------cCCeEEEEeCCHHHHHH
Confidence            34444433 67889999999999988             33333                   57889999999999999


Q ss_pred             HHHHHh
Q psy1420         113 LEANAE  118 (241)
Q Consensus       113 ~~~~~~  118 (241)
                      |.++++
T Consensus       250 a~~Rl~  255 (256)
T d1g60a_         250 ANFVLN  255 (256)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998875

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=86.71  E-value=0.99  Score=37.97  Aligned_cols=58  Identities=5%  Similarity=-0.027  Sum_probs=36.7

Q ss_pred             hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420          38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA  117 (241)
Q Consensus        38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~  117 (241)
                      .++..+..+|+|+|+|+|.++             ..++..+.    ..+..      .....+..+|.|+...+.-+...
T Consensus        74 ~~~~~~~~~ivE~GaG~G~La-------------~dil~~l~----~~~~~------~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          74 AADEPQTLRLIEIGPGRGTMM-------------ADALRALR----VLPIL------YQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             HTTCCSSEEEEEECCTTSHHH-------------HHHHHHHT----TSHHH------HTTEEEEEECCCHHHHHHHHHHS
T ss_pred             HhCCCccceEEecCCcccHHH-------------Hhhhhhhc----ccccc------cccceEEEeccchhHHHHHHHHh
Confidence            344455678999999999988             44444221    11110      02346888999998777766655


Q ss_pred             h
Q psy1420         118 E  118 (241)
Q Consensus       118 ~  118 (241)
                      .
T Consensus       131 ~  131 (365)
T d1zkda1         131 A  131 (365)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=85.20  E-value=0.36  Score=39.14  Aligned_cols=132  Identities=12%  Similarity=0.104  Sum_probs=73.1

Q ss_pred             HHHHhhcCCCCC--CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420          33 DIFIDRLGPTHD--TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL  110 (241)
Q Consensus        33 ~~~~~~l~~~~~--~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~  110 (241)
                      +.+.+-++.+++  .+|||+=+|.|..+             ..++.                   .+++++++|.++...
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da-------------~vlA~-------------------~G~~V~~iEr~p~l~  123 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDA-------------FVLAS-------------------VGCRVRMLERNPVVA  123 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHH-------------HHHHH-------------------HTCCEEEEECCHHHH
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHH-------------HHHHh-------------------CCCEEEEEccCHHHH
Confidence            345555554433  48999999999988             33333                   467899999999876


Q ss_pred             HHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCC-CCCCCCceeEEeeeehhhccc---c
Q psy1420         111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT---R  183 (241)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~---~  183 (241)
                      ........+...                     ....   -..+++++++|..+ +....++||+|..--.+..-.   .
T Consensus       124 ~ll~d~l~r~~~---------------------~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMFp~~~Ksa~  182 (250)
T d2oyra1         124 ALLDDGLARGYA---------------------DAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSAL  182 (250)
T ss_dssp             HHHHHHHHHHHH---------------------CTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCCCCCC---
T ss_pred             HHHHHHHHHHHh---------------------CchhHHHHhhhheeecCcHHHHHhccCCCCCEEEECCCCcccccccc
Confidence            555544331000                     0000   00368899998654 333356799999755443221   2


Q ss_pred             HHHHHHHHHHhccCCcEEEEEecCHHH-HHHHHHHCCCceEE
Q psy1420         184 IDKALSEAYRVLKPGGRFLCLEFSHEE-FKSMIESAGFQYVT  224 (241)
Q Consensus       184 ~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~l~~~Gf~~~~  224 (241)
                      ..+.++-++.++.++       ...++ ++..++.+.-+++-
T Consensus       183 ~kk~m~~l~~l~~~d-------~d~~~ll~~a~~~a~~RVVV  217 (250)
T d2oyra1         183 VKKEMRVFQSLVGPD-------LDADGLLEPARLLATKRVVV  217 (250)
T ss_dssp             --HHHHHHHHHSCCC-------TTGGGGHHHHHHHCSSEEEE
T ss_pred             chhHHHHHHhhccCC-------CCHHHHHHHHHhhCCCEEEE
Confidence            345555566655432       12233 44455555555443

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.72  E-value=0.34  Score=38.40  Aligned_cols=53  Identities=13%  Similarity=0.105  Sum_probs=41.4

Q ss_pred             HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420          33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF  112 (241)
Q Consensus        33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~  112 (241)
                      +.+++.. ..+|..|||.=+|+|+++             .....                   .+.+.+|+|+++...+.
T Consensus       198 ~~~I~~~-s~~gdiVLDpF~GSGTT~-------------~Aa~~-------------------lgR~~ig~El~~~y~~~  244 (279)
T d1eg2a_         198 ERLVRAL-SHPGSTVLDFFAGSGVTA-------------RVAIQ-------------------EGRNSICTDAAPVFKEY  244 (279)
T ss_dssp             HHHHHHH-SCTTCEEEETTCTTCHHH-------------HHHHH-------------------HTCEEEEEESSTHHHHH
T ss_pred             HHHHHhh-cCCCCEEEecCCCCcHHH-------------HHHHH-------------------hCCeEEEEeCCHHHHHH
Confidence            4444443 367889999999999988             33333                   46789999999999999


Q ss_pred             HHHHHh
Q psy1420         113 LEANAE  118 (241)
Q Consensus       113 ~~~~~~  118 (241)
                      +.+++.
T Consensus       245 a~~Ri~  250 (279)
T d1eg2a_         245 YQKQLT  250 (279)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999887

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.44  E-value=2.5  Score=30.96  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=24.8

Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE  205 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  205 (241)
                      ...+|+|+.+.+-      ...++...+.++++|++++.-
T Consensus        98 ~~g~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          98 GRGVNVAMDFVGS------QATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             TCCEEEEEESSCC------HHHHHHGGGGEEEEEEEEECC
T ss_pred             CCCceEEEEecCc------chHHHHHHHHHhCCCEEEEEe
Confidence            3468998854432      245788889999999998754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=83.25  E-value=3.9  Score=30.18  Aligned_cols=53  Identities=4%  Similarity=-0.180  Sum_probs=36.2

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +.+....+++.+|+-+|||......            .+++..+                 ....++++|.++..++.++
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a------------~~~ak~~-----------------G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSA------------IVGCKAA-----------------GASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHH------------HHHHHHH-----------------TCSEEEEECSCGGGHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHH------------HHHHHHc-----------------CCceeeccCChHHHHHHHH
Confidence            4456677999999999987544330            2222211                 2457999999999999987


Q ss_pred             HH
Q psy1420         115 AN  116 (241)
Q Consensus       115 ~~  116 (241)
                      +.
T Consensus        70 ~l   71 (174)
T d1p0fa2          70 EL   71 (174)
T ss_dssp             HT
T ss_pred             Hc
Confidence            54

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.37  E-value=0.6  Score=34.72  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=24.4

Q ss_pred             CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420         166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL  204 (241)
Q Consensus       166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~  204 (241)
                      ...+|+|+.+-+       .+.++.+.++|+|+|+++..
T Consensus        92 ~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          92 GYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence            457999997544       24567788999999998875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.71  E-value=3.3  Score=30.12  Aligned_cols=53  Identities=8%  Similarity=-0.150  Sum_probs=34.6

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +.+..+.+|+.+||-.|+| |.-.           ...+++..+                 ....++++|.++...+.++
T Consensus        20 l~~~~~~~~G~tVlI~GaG-GvG~-----------~aiq~ak~~-----------------G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLG-GVGL-----------AVIMGCKVA-----------------GASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCS-HHHH-----------HHHHHHHHH-----------------TCSEEEEECSCGGGHHHHH
T ss_pred             HHHhhCCCCCCEEEEecch-hHHH-----------HHHHHHHHH-----------------hcCceEEEcccHHHHHHHH
Confidence            4456677899999999986 3222           002333311                 2457899999999888877


Q ss_pred             HH
Q psy1420         115 AN  116 (241)
Q Consensus       115 ~~  116 (241)
                      +.
T Consensus        71 ~l   72 (176)
T d2fzwa2          71 EF   72 (176)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.42  E-value=3.9  Score=30.24  Aligned_cols=55  Identities=9%  Similarity=-0.095  Sum_probs=37.1

Q ss_pred             HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420          35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE  114 (241)
Q Consensus        35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~  114 (241)
                      +.+..+.+++.+|+-+|+|......            .+.+.        .         ....+++++|.++..++.++
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~a------------i~~ak--------~---------~G~~~Vi~vd~~~~kl~~Ak   71 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSV------------IMGCK--------S---------AGASRIIGIDLNKDKFEKAM   71 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHH------------HHHHH--------H---------TTCSEEEEECSCGGGHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHH------------HHHHH--------H---------cCCceEEEecCcHHHHHHHH
Confidence            4455667899999999987544330            12222        1         12457999999999999998


Q ss_pred             HHHh
Q psy1420         115 ANAE  118 (241)
Q Consensus       115 ~~~~  118 (241)
                      +.-.
T Consensus        72 ~~GA   75 (176)
T d1d1ta2          72 AVGA   75 (176)
T ss_dssp             HHTC
T ss_pred             hcCC
Confidence            7643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.83  E-value=0.71  Score=33.88  Aligned_cols=50  Identities=14%  Similarity=0.139  Sum_probs=32.4

Q ss_pred             hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420          37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN  116 (241)
Q Consensus        37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~  116 (241)
                      +..+.+++.+|+-+|+|.  ...+          ..+++.                  ....+++++|.++..++.+++.
T Consensus        21 ~~~~~~~g~~VlV~GaG~--vG~~----------~~~~ak------------------~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          21 KQTNARPGQWVAISGIGG--LGHV----------AVQYAR------------------AMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHTCCTTCEEEEECCSH--HHHH----------HHHHHH------------------HTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEeeccc--cHHH----------HHHHHH------------------HcCCccceecchhhHHHhhhcc
Confidence            345678899999998754  3300          022222                  1346899999999988887653