Psyllid ID: psy14280
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1891 | 2.2.26 [Sep-21-2011] | |||||||
| P97789 | 1719 | 5'-3' exoribonuclease 1 O | yes | N/A | 0.571 | 0.628 | 0.440 | 0.0 | |
| Q8IZH2 | 1706 | 5'-3' exoribonuclease 1 O | yes | N/A | 0.565 | 0.626 | 0.447 | 0.0 | |
| P40383 | 1328 | 5'-3' exoribonuclease 1 O | yes | N/A | 0.563 | 0.802 | 0.346 | 0.0 | |
| Q9VM71 | 908 | 5'-3' exoribonuclease 2 h | no | N/A | 0.315 | 0.657 | 0.363 | 1e-117 | |
| Q9FQ04 | 947 | 5'-3' exoribonuclease 4 O | yes | N/A | 0.306 | 0.612 | 0.351 | 1e-108 | |
| Q5ZIP4 | 949 | 5'-3' exoribonuclease 2 O | no | N/A | 0.312 | 0.622 | 0.329 | 1e-104 | |
| Q9FQ03 | 1020 | 5'-3' exoribonuclease 3 O | no | N/A | 0.274 | 0.508 | 0.367 | 1e-102 | |
| Q9FQ02 | 1012 | 5'-3' exoribonuclease 2 O | no | N/A | 0.281 | 0.526 | 0.334 | 5e-89 | |
| P22147 | 1528 | 5'-3' exoribonuclease 1 O | yes | N/A | 0.154 | 0.191 | 0.508 | 9e-88 | |
| Q5AMG5 | 968 | 5'-3' exoribonuclease 2 O | N/A | N/A | 0.196 | 0.384 | 0.398 | 3e-85 |
| >sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1149 (44%), Positives = 715/1149 (62%), Gaps = 69/1149 (6%)
Query: 131 ITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFD 190
+ + P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFD
Sbjct: 70 VLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFD 129
Query: 191 SNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHK 250
SNCITPGT FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHK
Sbjct: 130 SNCITPGTEFMARLHEHLKYFVNMKISTDK---------SWQGVTIYFSGHETPGEGEHK 180
Query: 251 IMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQ 310
IM++IR K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + +
Sbjct: 181 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---R 237
Query: 311 IVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP 370
+ PEET F LLHLSLMR+Y++ EF LKE ++F + IE IIDDW+LMGFL+GNDFIP
Sbjct: 238 VCAPEETTFHLLHLSLMREYIDYEFSALKEK--ITFKYDIEKIIDDWILMGFLVGNDFIP 295
Query: 371 NLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+LP LHI + ALPLLY Y +LP L GYINE G+LNL RFE++L KL+ FD E F E +
Sbjct: 296 HLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSEVF 355
Query: 431 ADIQYLEGKMGKKFSDVFH----------KEKSKEMDPDLAALIKATDDDYDDGTEEVLN 480
D+++ E K+G K+ + KEK K + + A D +G V +
Sbjct: 356 VDLKWFESKVGNKYLNEAAGAAAEEAKNCKEKRKPKGQENSLSWAALDKSEGEG---VAS 412
Query: 481 YANYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWN 540
N+E+ ED++ F +EF Q+K YY K+ V++E L +QA CY++AIQW
Sbjct: 413 RDNFED---ETEDDDL---FETEFRQYKRTYYMTKMGVDVVSDEFLANQAACYVQAIQWI 466
Query: 541 LHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELL 600
LHYYY+G SWSWYYP+HYAP++SDI+ S L + +E+G+PF PF+QLLAVLP+ASK LL
Sbjct: 467 LHYYYHGVQSWSWYYPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLL 526
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLT 660
P YQ+LMT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L
Sbjct: 527 PTCYQHLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLK 586
Query: 661 DEERSRNRHGPMLVYTYSNVNLGTALA--PDYFPAINENHAVEKPLYRDDIYVHPNKLRK 718
EER RN+H L+ Y T + P+ FPAI K + D V NK +
Sbjct: 587 KEERKRNQHSECLMCWYDRDTEFTYSSPWPEKFPAIERCCTRYKMISLDAWRVDINKNK- 645
Query: 719 GLCQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII---VQDKVQVPSLK 775
+ + LY FPTLKH++ ++ + V+VFQQ SR E++++ V + ++
Sbjct: 646 -ITRVDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENLMLEISVNAEPDELRIE 704
Query: 776 QVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP--VFERAAKDMQDAFQLSK 833
+A +LGK +F+N+PHL E RV AV+ +++ ++ G V+ QL+
Sbjct: 705 NIASAVLGKAVFVNWPHLEEARVVAVSDGETKFYIEEPPGTQKVYLGKTAPPSKVIQLTD 764
Query: 834 K----------SITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRST 883
K I++ Y + G+ I T +VY Q + RKY G+V ++ + +
Sbjct: 765 KEQSNWTKEIQGISEQYLRRKGIIINETSAVVYAQLLTGRKYQISQNGEVRLEKQWSKQI 824
Query: 884 VTYAYQSAVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGGCVIST---VKEEN 939
+ + YQ+ V +++ KT+D++F P F L P+YG G V + + E
Sbjct: 825 LPFVYQTIVKDIRAFDSRFSNIKTLDDLFPPRTMVFMLGTPYYGCTGEVQDSGDLITEGR 884
Query: 940 SFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTE 999
I++ F + EP+L L+ Q Y P Y +A +L +S L+SRFTGSIFI +
Sbjct: 885 --IRVVFSIPCEPNLDALIQNQHKYSIKYNPGYVLAGRLGVSGYLVSRFTGSIFIGRGSR 942
Query: 1000 ---EGAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGF 1056
G + N+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F +
Sbjct: 943 RNPHGDHKANVGLNLKFNKKNEEVPGYTKK--VGNEWMYSSAAEQLLAEYIERAPELFSY 1000
Query: 1057 LKDHSSDDIYLRDDVFPHQ---GEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLI 1113
+ +S +D++ DD++P + G ++V +I++WLK P + C ++DA +V I
Sbjct: 1001 IAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLHILDAAIVEKI 1060
Query: 1114 EHAVDTCE--KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPL 1171
E V+ C+ K K++ + VKP+ +Y P + PD D +F+LFDRVVN+R+ ++VP+
Sbjct: 1061 EEEVEKCKQRKSNKKVRVTVKPHLMYRPLEQQHGVIPDRDAEFRLFDRVVNVRESFSVPV 1120
Query: 1172 GYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGERLCG 1231
G RGT+IGI D +++V+FD+ FP G+ IRCS RGYR+P A++NLS+G R C
Sbjct: 1121 GLRGTVIGIKGASREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR-CE 1179
Query: 1232 NSNPHVKNI 1240
N + I
Sbjct: 1180 TGNQKLTAI 1188
|
Major 5'-3' exoribonuclease involved in mRNA decay. Required for the 5'-3'-processing of the G4 tetraplex-containing DNA and RNA substrates. The kinetic of hydrolysis is faster for G4 RNA tetraplex than for G4 DNA tetraplex and monomeric RNA tetraplex. Binds to RNA and DNA. Plays a role in replication-dependent histone mRNA degradation. Mus musculus (taxid: 10090) EC: 3EC: .EC: 1EC: .EC: 1EC: 1EC: .EC: - |
| >sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=XRN1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAT1 PE=3 SV=3 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1891 | ||||||
| 156537119 | 1739 | PREDICTED: 5'-3' exoribonuclease 1-like | 0.599 | 0.652 | 0.492 | 0.0 | |
| 345479163 | 1682 | PREDICTED: 5'-3' exoribonuclease 1-like | 0.599 | 0.674 | 0.492 | 0.0 | |
| 332029616 | 1679 | 5'-3' exoribonuclease 1 [Acromyrmex echi | 0.603 | 0.679 | 0.474 | 0.0 | |
| 380020587 | 1627 | PREDICTED: 5'-3' exoribonuclease 1-like | 0.605 | 0.703 | 0.467 | 0.0 | |
| 66514180 | 1633 | PREDICTED: 5'-3' exoribonuclease 1 isofo | 0.605 | 0.701 | 0.464 | 0.0 | |
| 322801303 | 1572 | hypothetical protein SINV_11797 [Solenop | 0.597 | 0.718 | 0.478 | 0.0 | |
| 291220730 | 2104 | PREDICTED: rCG25308-like [Saccoglossus k | 0.611 | 0.549 | 0.448 | 0.0 | |
| 270007014 | 1531 | hypothetical protein TcasGA2_TC013457 [T | 0.566 | 0.699 | 0.486 | 0.0 | |
| 189237444 | 1485 | PREDICTED: similar to 5-3 exoribonucleas | 0.566 | 0.721 | 0.486 | 0.0 | |
| 307180136 | 1644 | 5'-3' exoribonuclease 1 [Camponotus flor | 0.571 | 0.656 | 0.485 | 0.0 |
| >gi|156537119|ref|XP_001603129.1| PREDICTED: 5'-3' exoribonuclease 1-like isoform 1 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/1258 (49%), Positives = 810/1258 (64%), Gaps = 124/1258 (9%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKFFRYISERYPCLSE ++EYQIPEFDNLYLDMNGIIHNCSHPND D FRITE+ I
Sbjct: 1 MGVPKFFRYISERYPCLSEKLKEYQIPEFDNLYLDMNGIIHNCSHPNDADATFRITEETI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F++IFHYIEILFR+IQP+KLFFMA+DGVAPRAK+NQQRGRRFR+AKEAEVLE KA+ KG+
Sbjct: 61 FKNIFHYIEILFRIIQPQKLFFMAVDGVAPRAKINQQRGRRFRAAKEAEVLEAKARAKGQ 120
Query: 121 RLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKG 180
+P E RFD C FM +K+N+Q
Sbjct: 121 EIPKEARFD----SNCITPGTVFM--------SKLNEQ---------------------- 146
Query: 181 ERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVC-VILS 239
L+YF+ KI+TDKLW+ C +ILS
Sbjct: 147 ---------------------------LKYFITYKISTDKLWQK----------CKIILS 169
Query: 240 GHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVK 299
G E PGEGEHKIMDYIRYMK++PDY N RHCLYGLDADLIMLGLC+HEP+FSLLREEVK
Sbjct: 170 GSEVPGEGEHKIMDYIRYMKAQPDYEGNTRHCLYGLDADLIMLGLCSHEPHFSLLREEVK 229
Query: 300 FNTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVL 359
F K I+TPEET F LLHLSLMR+YLE EF +K+ L+F F IE IIDDWVL
Sbjct: 230 FGKTQKK----ILTPEETNFCLLHLSLMREYLEHEFSPVKDK--LTFKFDIEKIIDDWVL 283
Query: 360 MGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLA 419
MGFL+GNDFIP+LP+LHI NGALPLLY Y +VLPTLDGYINE G LNL+RFEKF+ KL
Sbjct: 284 MGFLVGNDFIPHLPNLHIENGALPLLYNAYMDVLPTLDGYINEAGTLNLERFEKFMEKLG 343
Query: 420 SFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKS--------KEMDPDLAALIKATDDDY 471
+D EQF E YAD+++ E K G++ ++ K+ K+ + L ALI AT+++
Sbjct: 344 KYDLEQFDEIYADLKFFEAKTGRRLNESERNSKNSPDENASPKKTNKALNALIMATENEL 403
Query: 472 DDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAE 531
++E L SD D E + EF QHK DYY K++YA V E +R QAE
Sbjct: 404 GADSDEDLEGE-------SDSDTEMQL----EFVQHKRDYYMNKMEYANVDAETMRSQAE 452
Query: 532 CYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAV 591
YIRAIQWNLHYYYNGC SWSWYYPHHYAP+ISDIK+F L L++++GEPF PF+QLLAV
Sbjct: 453 GYIRAIQWNLHYYYNGCCSWSWYYPHHYAPFISDIKNFKDLKLEFDLGEPFKPFEQLLAV 512
Query: 592 LPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKA 651
LPAASK LLP Y LMT E SPI++YYP +F TDLNGKKQ+WEAVVLIP IDE L+KA
Sbjct: 513 LPAASKSLLPTAYHGLMTEEKSPIIKYYPLDFKTDLNGKKQEWEAVVLIPLIDEKSLLKA 572
Query: 652 MDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKPLYRDDIYV 711
M LT EER RN HGPM ++T+ G AP+YFP+I ++A + RDDI V
Sbjct: 573 MKPCNAKLTPEERKRNSHGPMSIFTFIEKEQGIYEAPEYFPSI-RSYAQMMLVNRDDILV 631
Query: 712 HPNKLRKGLCQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQV 771
+L KGLC+ V L +Y FPTL+H+ T + AKVKVF+QPSR E++I+ ++
Sbjct: 632 PLERLVKGLCKGVQLSVYYPGFPTLQHIPHTACLAKAKVKVFEQPSRRENMILTVLPKEL 691
Query: 772 PSLKQVADQILGKTIFINYPHLIEIRVQAVATKDSRISF---------DKNSGPVFERAA 822
P + +A + LGKT+FI +PHL+E V VA ++IS D N E
Sbjct: 692 PPIDDLARKWLGKTVFIAWPHLVEALVVEVANSKTKISITYPQPKHATDGNHNFNTESMN 751
Query: 823 KDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRS 882
+ F + +KSIT+ Y T+LG+D+GN E+L++ P+ R+Y + +GK+T ++ +
Sbjct: 752 DMLLSTFNVQRKSITENYKTRLGIDVGNIEILIHAAPIMGRQYVYSAQGKMTLEKQWSDV 811
Query: 883 TVTYAYQSAVLNLQ-QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVI-STVKEENS 940
YAYQ + ++ + +++ +I ++F P CF L +PHYG+ G V V ++S
Sbjct: 812 PQAYAYQVVLKDISIHNHDFIQFTSITDVFKPKSVCFMLGHPHYGAMGEVTEGGVDLKSS 871
Query: 941 FIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE 1000
+K++ +V EP+ + LQ DT Y+P A +L IS LLSR TG++F+I+ E
Sbjct: 872 RVKVAMRVTSEPNFDRVRQLQADTRMRYMPGNIAAQRLGISSHLLSRITGTVFVING--E 929
Query: 1001 G-----AKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFG 1055
G A ++N+GLN+KF++KNEEV G+T++D W Y+ + V +K+Y+++FPE+F
Sbjct: 930 GVDPAHASKYNLGLNLKFNKKNEEVPGYTKKD-INGTWLYSVKAVDFVKSYIQKFPELFE 988
Query: 1056 FLK-DHSSDDIYLRDDVFPHQGEQRVAQIVSWLKEQPHA-KAEVRPCGAAVVDAKVVSLI 1113
L+ + S D++LR+ +FP+ G + V VSWLKEQ A R CG ++ +VV I
Sbjct: 989 RLEMNLVSSDMFLREHLFPNTGAEGVDATVSWLKEQQKARGTTTRTCGTEELETEVVQAI 1048
Query: 1114 EHAVDTCEKVEKQ----ITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTV 1169
E VD + ++Q + + VKP+ LY P + PDP + + FDR+V +RD +TV
Sbjct: 1049 EKDVDASLEAQRQAGKSVLMQVKPHLLYKPGLNSGSVPPDPKAQHRFFDRIVCVRDSFTV 1108
Query: 1170 PLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIR-CSESRGYRMPAQAMINLSYG 1226
PLGY+GTIIG+ + E MY+V+FD F G+ + CS +R YR+ A IN+SYG
Sbjct: 1109 PLGYKGTIIGVQKNENPLLTMYEVLFDIAFAGGLVMHGCSSNRSYRLAATDFINISYG 1166
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345479163|ref|XP_003423891.1| PREDICTED: 5'-3' exoribonuclease 1-like isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|332029616|gb|EGI69505.1| 5'-3' exoribonuclease 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
| >gi|380020587|ref|XP_003694164.1| PREDICTED: 5'-3' exoribonuclease 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|66514180|ref|XP_393481.2| PREDICTED: 5'-3' exoribonuclease 1 isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|322801303|gb|EFZ21990.1| hypothetical protein SINV_11797 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
| >gi|291220730|ref|XP_002730377.1| PREDICTED: rCG25308-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
| >gi|270007014|gb|EFA03462.1| hypothetical protein TcasGA2_TC013457 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|189237444|ref|XP_974750.2| PREDICTED: similar to 5-3 exoribonuclease 1 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|307180136|gb|EFN68180.1| 5'-3' exoribonuclease 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1891 | ||||||
| UNIPROTKB|E1C8R7 | 1736 | XRN1 "Uncharacterized protein" | 0.408 | 0.445 | 0.467 | 0.0 | |
| UNIPROTKB|F1SKG4 | 1725 | XRN1 "Uncharacterized protein" | 0.403 | 0.442 | 0.464 | 0.0 | |
| UNIPROTKB|E2R2X2 | 1729 | XRN1 "Uncharacterized protein" | 0.404 | 0.441 | 0.466 | 0.0 | |
| UNIPROTKB|J9PAD8 | 1730 | XRN1 "Uncharacterized protein" | 0.404 | 0.441 | 0.466 | 0.0 | |
| MGI|MGI:891964 | 1719 | Xrn1 "5'-3' exoribonuclease 1" | 0.404 | 0.444 | 0.465 | 0.0 | |
| UNIPROTKB|Q8IZH2 | 1706 | XRN1 "5'-3' exoribonuclease 1" | 0.405 | 0.449 | 0.467 | 0.0 | |
| UNIPROTKB|E1BMZ8 | 1723 | E1BMZ8 "Uncharacterized protei | 0.560 | 0.614 | 0.443 | 6.5e-307 | |
| ZFIN|ZDB-GENE-040426-1203 | 1697 | xrn1 "5'-3' exoribonuclease 1" | 0.498 | 0.555 | 0.452 | 3.7e-281 | |
| RGD|1309713 | 1723 | Xrn1 "5'-3' exoribonuclease 1" | 0.407 | 0.446 | 0.466 | 9.5e-248 | |
| FB|FBgn0020261 | 1613 | pcm "pacman" [Drosophila melan | 0.447 | 0.524 | 0.367 | 1.7e-197 |
| UNIPROTKB|E1C8R7 XRN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1858 (659.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 380/813 (46%), Positives = 526/813 (64%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGEILPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ + V LSGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------ITVYLSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KP ++PN RHCLYGLDADLIMLGL THE +F+LLREEV+F K ++ + PEET
Sbjct: 188 EKAKPHHDPNTRHCLYGLDADLIMLGLTTHEAHFALLREEVRFGGKKSQ---RACAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF +K+ +SF + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSPVKDK--ISFDYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY+ Y +LP L GYINE G+LNLKRFEK+LT+L+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXXXXXXXXXXWR 497
K+G K+ + ++E + KA ++
Sbjct: 363 SKVGNKYLNEAAGIAAEEARNNKQKKRKAQENSLCLAALEKNEDEVVTSKTVLEDEPEDD 422
Query: 498 TNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPH 557
F +EF Q+K YY K+ V+++ L DQAECY++AIQW LHYYY+G SWSWYYP+
Sbjct: 423 DLFETEFRQYKRTYYMTKMGIEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYYPY 482
Query: 558 HYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILE 617
HYAPY+SDI++ S L +++E+G+PF+PF+QLLAVLPAASK+LLP YQ+LM ++SPI+E
Sbjct: 483 HYAPYLSDIRNISELKIQFELGKPFMPFEQLLAVLPAASKDLLPRCYQHLMVSQDSPIIE 542
Query: 618 YYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTY 677
YYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM++ L +EE+ RN H L+Y Y
Sbjct: 543 YYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKCLKEEEKRRNVHSACLMYWY 602
Query: 678 S-NVNLG-TALAPDYFPAINENHAVEK--PLYRDDIYVHPNKLRKGLCQDVNLK-LYVTH 732
+ T+ P+ FPAI H K PL + + NK+ K +N LY
Sbjct: 603 DKDAEFPYTSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITK-----INKSALYFCG 657
Query: 733 FPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVADQILGKTIFIN 789
FPTLKH++ ++ + V+VFQQ S E++ I+ +K + +++ VA +LGK +F+N
Sbjct: 658 FPTLKHIKHKFYLKKSGVQVFQQSSHGENMMLEILTDEKSKEQTVENVASSVLGKVVFVN 717
Query: 790 YPHLIEIRVQAVATKDSRISFDKNSG-----------PVFERAAKDMQDAFQLSK-KSIT 837
+PHL E RV AV+ +++ ++ G P D + + L + + ++
Sbjct: 718 WPHLEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVTFVGDKEQSMWLKEVQGVS 777
Query: 838 DGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQ 897
+ Y + G+ I T V+VY Q + +Y G+V ++ + + + + YQ+ V +++
Sbjct: 778 EHYQRRKGIIIHETSVVVYAQLLTGNRYQLNQNGQVYLEKQWSKQALPFVYQTVVKDIKA 837
Query: 898 ARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
+T+D++F PG F L +P+YG G
Sbjct: 838 FDSRFSNIRTLDDLFPPGSTAFMLGSPYYGCMG 870
|
|
| UNIPROTKB|F1SKG4 XRN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R2X2 XRN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9PAD8 XRN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:891964 Xrn1 "5'-3' exoribonuclease 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8IZH2 XRN1 "5'-3' exoribonuclease 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BMZ8 E1BMZ8 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-1203 xrn1 "5'-3' exoribonuclease 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| RGD|1309713 Xrn1 "5'-3' exoribonuclease 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0020261 pcm "pacman" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.13 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1891 | |||
| COG5049 | 953 | COG5049, XRN1, 5'-3' exonuclease [DNA replication, | 0.0 | |
| pfam03159 | 237 | pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus | 1e-122 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 5e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-04 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 6e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.002 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.002 |
| >gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] | Back alignment and domain information |
|---|
Score = 640 bits (1651), Expect = 0.0
Identities = 319/889 (35%), Positives = 451/889 (50%), Gaps = 166/889 (18%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVP FFR++SERYP + +++ E QIPEFDNLYLDMNGI+HNC+HPND P TE+++
Sbjct: 1 MGVPSFFRWLSERYPKIIQLIEEKQIPEFDNLYLDMNGILHNCTHPNDGSP--PETEEEM 58
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
++ +F YI+ + I+P+KL +MA+DGVAPRAKMNQQR RRFRSAK+A KA+ GE
Sbjct: 59 YKAVFEYIDHILLKIRPRKLLYMAVDGVAPRAKMNQQRARRFRSAKDASAAALKAEPNGE 118
Query: 121 RLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKG 180
+P EK ++ E
Sbjct: 119 EIPEEK----------------------------------------------DEIGNEID 132
Query: 181 ERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSG 240
+K+FDSNCITPGTPFM RL + LRY++ K+++D W+++ +I SG
Sbjct: 133 TIDVEKKKFDSNCITPGTPFMERLAKVLRYYIHCKLSSDP---------EWRNLRIIFSG 183
Query: 241 HETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKF 300
H PGEGEHKIM++IR K++P YNPN RHC+YGLDADLIMLGL THEP+F +LRE+V F
Sbjct: 184 HLVPGEGEHKIMNFIRSQKAQPSYNPNTRHCIYGLDADLIMLGLSTHEPHFLILREDVFF 243
Query: 301 ---NTKSNKGGSQIVT---------PEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPF 348
+ + K T F+LLH+SL+R+YLE EF +EP L F F
Sbjct: 244 GSKSRRKRKCTKCGRTGHSDEECKVLTHQPFYLLHISLLREYLEREF---REPT-LPFTF 299
Query: 349 SIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLP------TLDGYIN- 401
+E I+DDW+ + F +GNDF+P+LP L I GA+ L +++++ LP T DG IN
Sbjct: 300 DLERILDDWIFLCFFVGNDFLPHLPCLDIREGAIETLTEIWKKSLPHMKGYITCDGVINL 359
Query: 402 ---EGGYLNLKRFEKFLTK------------LASFDFEQFREKYAD--------IQYLEG 438
E L FE + K L F + R++ + L G
Sbjct: 360 ARLEVILAILGSFEDDIFKKDHIQEERKNESLERFSLRKERKEGLKGMPRVVYEQKKLIG 419
Query: 439 KMGKKFSDVFHKEKS----KEMDPDLAALIKATDD------------------------D 470
+ D ++KS E D AL K D
Sbjct: 420 SIKPTLMDQLQEKKSPDLPDEEFIDTLALPKDLDMKNHELFLKRFANDLGLSISKAIKSK 479
Query: 471 YDDGTEEVLNYANYEEYYYSDEDE----------------------EWRTNFFSEFGQHK 508
+ E + + +E E E E F K
Sbjct: 480 GNYSLEMDIASDSPDEDEEEFESEVDSIRKIPDKYVNIIVEEEEENETEKTVNLRFPGWK 539
Query: 509 TDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKD 568
YY KL + + E +RD A+ Y+ +QW L YYY GC SW WYYP+HYAP +D+
Sbjct: 540 ERYYTSKLHFTTDSEEKIRDMAKEYVEGLQWVLSYYYRGCPSWDWYYPYHYAPLAADLSK 599
Query: 569 FSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLN 628
S ++K+E+G PF PF+QL+AVLPA SK L+PE ++ LM E SPI+++YPEEF D+N
Sbjct: 600 LSDNDIKFELGTPFRPFEQLMAVLPARSKNLVPEGFRPLMDDEKSPIIDFYPEEFKLDMN 659
Query: 629 GKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYS-NVNLGTALA 687
GK W+AVVL+PFIDE +L+ A+ L++EER RN G L+++ + +L
Sbjct: 660 GKTASWQAVVLLPFIDERRLLSAVAVKYPTLSEEERKRNLRGLDLLFSSNKKSDL----- 714
Query: 688 PDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLYVTHFPTLKHVQFTHKIEN 747
+ F + + +K I + + GL V L P L + +
Sbjct: 715 SELFKDL-YSKCKQKE----YITMCSKESPYGLFGTVKLGAEGL-APNLLSLCPISFLSY 768
Query: 748 AKVKVFQQPSRNESII-IVQDKVQVPSLKQVADQILGKTIFINYPHLIE 795
+ VF + S+N+S +++D + K + + K I + +P+L E
Sbjct: 769 PGLMVFLEYSKNQSARLVIEDPKSTVTNKSIVLRGFIKPINVLWPYLRE 817
|
Length = 953 |
| >gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1891 | |||
| KOG2045|consensus | 1493 | 100.0 | ||
| COG5049 | 953 | XRN1 5'-3' exonuclease [DNA replication, recombina | 100.0 | |
| KOG2044|consensus | 931 | 100.0 | ||
| PF03159 | 237 | XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: | 100.0 | |
| cd00128 | 316 | XPG Xeroderma pigmentosum G N- and I-regions (XPGN | 98.44 | |
| KOG2044|consensus | 931 | 98.33 | ||
| PTZ00217 | 393 | flap endonuclease-1; Provisional | 98.13 | |
| PF03159 | 237 | XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: | 98.06 | |
| COG5049 | 953 | XRN1 5'-3' exonuclease [DNA replication, recombina | 97.74 | |
| KOG2045|consensus | 1493 | 97.55 | ||
| PRK03980 | 292 | flap endonuclease-1; Provisional | 97.32 | |
| TIGR03674 | 338 | fen_arch flap structure-specific endonuclease. End | 97.21 | |
| PF00752 | 101 | XPG_N: XPG N-terminal domain; InterPro: IPR006085 | 95.32 | |
| smart00485 | 99 | XPGN Xeroderma pigmentosum G N-region. domain in n | 95.06 | |
| KOG2518|consensus | 556 | 94.63 | ||
| smart00475 | 259 | 53EXOc 5'-3' exonuclease. | 92.93 | |
| PF00867 | 94 | XPG_I: XPG I-region; InterPro: IPR006086 This entr | 88.86 | |
| cd00008 | 240 | 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas | 86.83 |
| >KOG2045|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-304 Score=2677.64 Aligned_cols=1139 Identities=46% Similarity=0.803 Sum_probs=1024.8
Q ss_pred CChhHHHHHHHhhcCCchhhhcccCCCCCCEEEEecCCcccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccceE
Q psy14280 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKL 80 (1891)
Q Consensus 1 MGVP~FfrWL~erYP~i~~~v~e~~ipefDnLYLDMNGIIH~Csh~~~~d~~~~~seeeif~~If~yID~L~~iVrPrKl 80 (1891)
||||+||||++|||||+++++++.+||||||||||||||||+|+|+||+++++|++|||||.+||+|||+||.+|||+|+
T Consensus 1 MGvPKFfR~iSERyP~lseliee~qIPEFDNLYLDMNgIlHNCsH~nDddvt~rLtEeEif~~IfnYIdhLf~~IkPqKl 80 (1493)
T KOG2045|consen 1 MGVPKFFRYISERYPCLSELIEEHQIPEFDNLYLDMNGILHNCSHPNDDDVTFRLTEEEIFQEIFNYIDHLFYLIKPQKL 80 (1493)
T ss_pred CCchHHHHHhhhhchHHHHHhhhccCCcccceeeecccccccCCCCCCCccCcCCCHHHHHHHHHHHHHHHHHhhCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCcchhhhHHHhhhhhhhhHHHHHHHHHhhhCCCCCcccccccccccccCcccceeeeccCCCchhhhhhhhh
Q psy14280 81 FFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160 (1891)
Q Consensus 81 lyiAIDGVAPRAKMnQQRsRRFrsa~ea~~~~~~~k~~g~~l~~e~~fd~~~l~~~~p~k~~~~aiDGvaP~aKmnqQr~ 160 (1891)
||||||||||||||||||+||||+|
T Consensus 81 ffMAVDGvAPRAKMNQQRsRRFrTA------------------------------------------------------- 105 (1493)
T KOG2045|consen 81 FFMAVDGVAPRAKMNQQRSRRFRTA------------------------------------------------------- 105 (1493)
T ss_pred EEEeecccCchhhhhHHHHHhhhhh-------------------------------------------------------
Confidence 9999999999999999999999998
Q ss_pred ccccchHHHHHHHHHHHHhCCCCCCcccCCCCcccCCchHHHHHHHHHHHHHHHhhcCCcccccccccccccceEEEEcC
Q psy14280 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSG 240 (1891)
Q Consensus 161 rrf~s~keae~~~~ka~~~G~~lp~e~~FDSN~ITPGTeFM~kL~~~Lk~fI~~KistDp~W~~~~~~~~~~~lkVIlSg 240 (1891)
++|+.++.||.++|+.+|. ++||||||||||+||.||++.|+|||+.|+++|+.|++ ++|||||
T Consensus 106 ------rdAe~qlaKA~enGe~~p~-erFDSNcITPGTeFM~rl~~~L~yfIktKistDs~Wq~---------~~vIlSG 169 (1493)
T KOG2045|consen 106 ------RDAEQQLAKAAENGELRPH-ERFDSNCITPGTEFMVRLQEGLRYFIKTKISTDSLWQR---------CTVILSG 169 (1493)
T ss_pred ------hhHHHHHHHHHhccccCcc-cccccCCCCCcHHHHHHHHHHHHHHHHhccccchhhcc---------cEEEEeC
Confidence 4567778889999999997 89999999999999999999999999999999999999 9999999
Q ss_pred CCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccCCCCcceE
Q psy14280 241 HETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFF 320 (1891)
Q Consensus 241 s~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~~~~~~F~ 320 (1891)
|+||||||||||||||.+|+||+|||||||||||+|||||||||+||+|||++|||||+|+++.+++ ..+.++|+
T Consensus 170 hevPGEGEHKIMdyIRt~kaq~dydpNTRHClYGLDADLImLGL~tHepHF~lLREEVtFgrrn~~k-----~lehqkFy 244 (1493)
T KOG2045|consen 170 HEVPGEGEHKIMDYIRTMKAQPDYDPNTRHCLYGLDADLIMLGLCTHEPHFVLLREEVTFGRRNKRK-----SLEHQKFY 244 (1493)
T ss_pred CcCCCcchHHHHHHHHHhhcCCCCCCCcceeecccchhhheeeeccCCcceeeeeeeeecccccccc-----hhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999765554 35778999
Q ss_pred EEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCCCCCCccccCCcHHHHHHHHHHHcccCCCcc
Q psy14280 321 LLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYI 400 (1891)
Q Consensus 321 llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLPhLP~L~I~eGald~L~~~Yk~~Lp~l~gYL 400 (1891)
|||||+|||||++||..+++ .+.|+||+|||+||||||+||+|||||||||+|||++|||++|+.+|++++|++||||
T Consensus 245 LLHLsLLREYlelEF~e~rd--t~~fkyd~erIlDD~ILl~flVGNDFLPhLP~LHIn~gAlpllystykkvlpt~~GyI 322 (1493)
T KOG2045|consen 245 LLHLSLLREYLELEFDELRD--TDEFKYDIERILDDWILLGFLVGNDFLPHLPCLHINSGALPLLYSTYKKVLPTLGGYI 322 (1493)
T ss_pred hhHHHHHHHHHHHHHHHhhh--ccchhhhHHHHHHHHHHHHHhhccccccCCCccccCCChHHHHHHHHHHHhccCCccc
Confidence 99999999999999999988 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeecHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhCCCcc----h--------hh--hh------hccccC--C-
Q psy14280 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFS----D--------VF--HK------EKSKEM--D- 457 (1891)
Q Consensus 401 te~G~INl~rL~~fL~~Ls~~E~~~F~~~~~d~~~~e~k~~~k~~----e--------~~--k~------~~~k~~--~- 457 (1891)
||+|.|||.||+.||.+|..+|.++|.++.+|+++.++|..+--. + .. +. ++.+.. +
T Consensus 323 NE~G~lNl~Rle~~L~eL~nfeke~Fke~led~k~~nskr~r~~~~~~~~~~~~dika~t~sq~~d~l~~~~~~~p~i~~ 402 (1493)
T KOG2045|consen 323 NENGKLNLRRLEIFLSELTNFEKEHFKEHLEDLKYMNSKRERFDDPEQQELAEMDIKAITESQNLDSLLGEESKDPLINK 402 (1493)
T ss_pred cccceecHHHHHHHHHHHHhhhHHHHHHHHHhhhhccccccccccHHHHhhhcccHHhhhhhhhhhhhcccccccccccc
Confidence 999999999999999999999999999999999988877543210 0 00 00 000000 0
Q ss_pred -----ccHHHHHhhcC------------------CCCCCChhhh----------hcccccccccCCCcchhhh-cccccc
Q psy14280 458 -----PDLAALIKATD------------------DDYDDGTEEV----------LNYANYEEYYYSDEDEEWR-TNFFSE 503 (1891)
Q Consensus 458 -----~~l~~l~k~~~------------------~~~~d~~~~~----------~~~~~~~~i~~~~d~ee~~-~~~~~~ 503 (1891)
.+-+++++... .++.|+.|++ ..++.++.. .+.+..|+ .++.++
T Consensus 403 ~a~ld~dD~~Fl~~~~eDl~~~~~~s~s~~~~ld~~~~de~EdEf~~~~~t~~ls~~~~~~~~--n~eea~~eKti~n~~ 480 (1493)
T KOG2045|consen 403 SALLDDDDSAFLSDHEEDLSDLEPGSGSDELLLDNLDADELEDEFAVELATLALSGMNDADFA--NDEEACWEKTILNKE 480 (1493)
T ss_pred ccccccchHHHHHHhhhhccccccccCccchhhccccchhhhHHHHHHHHHHHHhcccccccc--chHHHhhhhhhHHHH
Confidence 00001111000 0011111111 011111111 01111233 345677
Q ss_pred ccchHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhhhhhcccccccCcCCCCCccccCCCccccccccccccccccCCCCC
Q psy14280 504 FGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFL 583 (1891)
Q Consensus 504 ~~~~K~~YY~~Kf~~~~~~~e~l~~i~~~YveGLqWVL~YYy~GcpSW~WyYPYHYAP~iSDl~~~~~~~i~Fe~g~Pf~ 583 (1891)
|+.||+.||++|+++++.|+|.++++|++|||||||||+|||+||+||+|||||||||||||++++.+++|+|++|+||+
T Consensus 481 F~rwK~~yYrdKlkf~~~dee~lrelae~YVeaLQWvL~YYYrGc~SWsWyYphHyaP~ISDl~kgldv~ieF~mgtPF~ 560 (1493)
T KOG2045|consen 481 FQRWKRNYYRDKLKFDPNDEELLRELAEHYVEALQWVLDYYYRGCQSWSWYYPHHYAPFISDLKKGLDVEIEFHMGTPFL 560 (1493)
T ss_pred HHHHHHHHhhhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccchhHhHhcccceeEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhhhccCCcccCCCCHhhHhhhcCCCCcccccCCCcceecCCCCccceeeEEecCCcChHHHHHHHHhhcCCCCHHH
Q psy14280 584 PFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEE 663 (1891)
Q Consensus 584 PfeQLmaVLPp~Sk~LLP~~yr~LMtdp~SPI~dFYP~~FeiDlNGKk~~WegVVLLPFIDe~rLl~Am~~~~~~LT~EE 663 (1891)
||||||||||++|+.|||.+||+||.++.|||+||||.+|++|+|||+++||||||||||||+||++||.+++..||.||
T Consensus 561 PFqQLlAVLPaaSa~llPp~frdLM~~~~SPI~DFYPaefelD~NGKtadWEAVVLIpFIdEkRLleAm~pk~~~Ls~EE 640 (1493)
T KOG2045|consen 561 PFQQLLAVLPAASAKLLPPAFRDLMLLPTSPIADFYPAEFELDLNGKTADWEAVVLIPFIDEKRLLEAMLPKEAQLSLEE 640 (1493)
T ss_pred cHHHHHHhchhhhhccCChhhhHhhcCCCCchhhcchhhheecccCCccceeEEEEEeecchHHHHHHHhhHhhhcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCcEEEEecCCCCccccC--CCCCCCcccccceeecccCCccccCCccccccCCccccccccccCCCccccccc
Q psy14280 664 RSRNRHGPMLVYTYSNVNLGTALA--PDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLYVTHFPTLKHVQF 741 (1891)
Q Consensus 664 k~RN~~G~~llF~yd~~~~~~~~S--p~~Fpdi~~~~~~~~~~~~~~~~~p~~~l~~gL~~gv~~~~~~~GFPTL~~Lp~ 741 (1891)
+.||+||++++|.|+......|+| |+.|+++.+|||+.+.+.... ++....++||||||+++++++|||||+||||
T Consensus 641 r~RNs~g~~~vys~~~~~~s~yps~l~g~f~dv~~~~~v~K~y~~~~--~~~se~~~gllPnaklgvff~GFPTm~~L~~ 718 (1493)
T KOG2045|consen 641 RERNSHGPMYVYSYSTVAQSPYPSYLPGRFLDVLYCTEVAKWYHEIA--VNLSESVCGLLPNAKLGVFFPGFPTMQHLPF 718 (1493)
T ss_pred hhhcccCCceeeecchhhcCCCCCCCccccccccccccccccccccc--ccCceeEEEEcCCchhceeccCCcchhcCCc
Confidence 999999999999999999999998 899999999999987765543 4667889999999999999999999999999
Q ss_pred eeeeecceeEEecCCCCCCcEEEEeccCCCc-cHHHHHHHHcCCEEEecCCccceEEEEEEecCCeeEEEecCCCCccc-
Q psy14280 742 THKIENAKVKVFQQPSRNESIIIVQDKVQVP-SLKQVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFE- 819 (1891)
Q Consensus 742 t~~L~~~gV~VFq~pSR~eSMiL~I~~~~~~-sl~eiAk~LLGK~VyVgWP~L~EAKVVsVSD~~~ky~l~~~~g~~~~- 819 (1891)
+++|++++|+||||+||++||||.+.+.... +++++|+++|||+|||+||||+||+||+|+|++..|...+. +...
T Consensus 719 ~~eLry~~~nVFgq~SrnqsmVlkved~~~~~tle~~asq~l~k~I~vdWPyLreAkv~s~~dgd~i~~~~~s--ti~kk 796 (1493)
T KOG2045|consen 719 DFELRYDRVNVFGQVSRNQSMVLKVEDRQLEDTLEAVASQYLGKVIHVDWPYLREAKVVSVADGDQIVDSEGS--TINKK 796 (1493)
T ss_pred cceeeecceeeecccccCcceEechhhhhccchHHHHHHHhcCceEEccCchhheeeeeeecCCCeEEeccCC--chhhh
Confidence 9999999999999999999999999998755 68999999999999999999999999999999988776532 2221
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcccceeecCeeEEEEEEeecceeEEecCCCceeEEeeccccccceecchhcccccccc
Q psy14280 820 RAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQAR 899 (1891)
Q Consensus 820 ~~~~~e~~~w~k~~~~I~e~Y~KR~GI~IGev~VLVhVrpL~Glkyv~~~~Gav~lvK~fS~~e~~YPlQlIV~DV~~~D 899 (1891)
.....|+++|.++|+.+.++|.||+||.+|+.++|++|||++|+.|.+...|.+..-++||+..+.||+|+||+||.++|
T Consensus 797 d~~e~eKrq~~s~~n~l~e~y~krfgi~~a~~~ala~Vrp~tGlvye~~ggg~lk~f~~wss~~~~yPaqlVVedv~~ed 876 (1493)
T KOG2045|consen 797 DMSEEEKRQFDSECNALQEHYIKRFGIQFANYDALAYVRPFTGLVYEFRGGGALKVFDSWSSSVTGYPAQLVVEDVTVED 876 (1493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccceeeEEEEeeccceEeccCCcEEEeeccccCcccccchhhhhhhhhccc
Confidence 13457889999999999999999999999999999999999999998766667777789999999999999999999999
Q ss_pred ccC-ccCCcccccCCCCEEEEeCCCC-CCCcEEEeccc-cccCcEEEEEEEecCCCChhhhhhhcccccccccChHHHHH
Q psy14280 900 ESL-EYKTIDEIFYPGCQCFALSNPH-YGSGGCVISTV-KEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVAS 976 (1891)
Q Consensus 900 ~Rf-~~~pIeEeFPiGSkVffLG~~~-YGs~G~Vvg~~-~~~~~rlkVsv~v~~EP~~~~~~~~~~~~~~~Y~Ps~~VAk 976 (1891)
+|+ +.+|+|++||+||+||+||+++ ||++|+|.|++ ....+.+.+++-+..||.++++++++++...+|||+|+||+
T Consensus 877 ~r~kerlpve~efP~~Skv~~lg~ya~yG~~~tv~g~s~~k~~~~~~e~~gld~epk~ga~r~~me~~~~kyypsyivak 956 (1493)
T KOG2045|consen 877 RRRKERLPVEHEFPVGSKVFLLGPYAYYGSEGTVQGPSLAKTNGRIQESIGLDPEPKVGAARQLMEERDRKYYPSYIVAK 956 (1493)
T ss_pred hhhhccCCceeecCCCCeEEEecCccccCCcccccCccchhhcceEEEeeccCCchhHHHHHHhhhhhhhhhccHHHHhh
Confidence 999 8899999999999999999876 99999999998 34445566666688999999999999999999999999999
Q ss_pred HcCCCHhhHhhhcceEEEecCCccCcceeeeeeeeeeccCCceecCceeccCCCCceEecHHHHHHHHHHHHhChHHHHH
Q psy14280 977 KLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGF 1056 (1891)
Q Consensus 977 ~LGIspl~LSRITGS~~V~~gsr~~~~KiNIGLNLKF~~RnqkVlGYTRk~~~~~~WEYS~kAV~LI~eY~~kFPeLF~~ 1056 (1891)
.|+|+|++||||||+|+|..++ ++++||||+|||.+|++||+||||| +.++|+||++||+|+++|+++||+||.+
T Consensus 957 ~l~ihp~llsrITgtf~i~n~~---rkr~niGlqlkfdar~qkvlgysrR--~~~gweySn~tv~l~key~qtfpdff~~ 1031 (1493)
T KOG2045|consen 957 LLRIHPRLLSRITGTFWIVNGP---RKRHNIGLQLKFDARNQKVLGYSRR--TNNGWEYSNLTVDLMKEYCQTFPDFFDF 1031 (1493)
T ss_pred hhccchHHHhhhcceEEEEcCC---ccceecccccccchhhhhhhhhccc--cCccccchhhHHHHHHHHHhhchHHHHH
Confidence 9999999999999999999986 5899999999999999999999999 9999999999999999999999999999
Q ss_pred hhcCCCCCccccCCCCCc-chHHHHHHHHHHHhhCCCCccccccCCccccCHHHHHHHHHHHHHhhhcc-ccEe--eecC
Q psy14280 1057 LKDHSSDDIYLRDDVFPH-QGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVE-KQIT--LFVK 1132 (1891)
Q Consensus 1057 L~~~~~~d~~~~~DIFp~-~~~~kLkEIkaWLKe~~~~~le~Vscgse~Ldke~IkaIE~~idk~~k~~-K~v~--l~Vk 1132 (1891)
|..+...++....|+||+ ++..+|++|+.|||++++.++++|+|+++.|++++|+.+|++++++.+.+ +.++ +.|+
T Consensus 1032 l~~~~t~d~~~~~d~FP~kd~~~~l~~vk~wlk~~g~~~~~rVsl~sd~l~~e~Ik~~e~~~~~~~s~~~~~~k~l~~vp 1111 (1493)
T KOG2045|consen 1032 LGDNDTADFVFEQDVFPNKDGHRRLEEVKNWLKQQGHMKVERVSLGSDTLCRETIKLLEAAVDDLRSLPVKHVKLLVKVP 1111 (1493)
T ss_pred hcccccccchhhHhhCCCchhhhHHHHHHHHHHhcCcceeeeEeecccchhHHHHHHHHHHHHhhhhccchhhhhhcCcc
Confidence 998888899999999997 88899999999999999999999999999999999999999999988544 3222 3466
Q ss_pred CCccccccCCCCCcCCCCCCCcccCCeEEEEeCCCCccccCceEEEEEecCCCCccceEEEEeecccCCCCccc--cCCC
Q psy14280 1133 PNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIR--CSES 1210 (1891)
Q Consensus 1133 p~~L~kP~~~~~~L~PD~~q~F~LGDRVV~VrdsG~VPfG~kGTVVGI~~~~~~~d~~vDVLFDepF~GGttL~--cs~~ 1210 (1891)
+.++..|......+ ..|.|+||||||||+|+|+||+|++||||||+..++ +++++||||.|+++|++|+ |+++
T Consensus 1112 r~a~lnp~~~~v~l---~sq~f~lgdrVvyvqdsgkvPv~~kGTVvG~m~~~~--~~~~~vlFd~~~~ngnn~~Gr~~~~ 1186 (1493)
T KOG2045|consen 1112 RLAKLNPTLPDVYL---SSQPFRLGDRVVYVQDSGKVPVGTKGTVVGIMPVTD--DTFCKVLFDSPVPNGNNIHGRAEDR 1186 (1493)
T ss_pred hhhhcCCCCcceee---ccccccccceEEEeeccCccccccccceEEEEeccc--ccccceeecccccCCCccCceeccc
Confidence 66656555543333 699999999999999999999999999999999864 7899999999999999998 9999
Q ss_pred ccccccCcceeecCccccccCCC
Q psy14280 1211 RGYRMPAQAMINLSYGERLCGNS 1233 (1891)
Q Consensus 1211 RG~~Vp~ssLLNLT~gqr~~~~s 1233 (1891)
||..+..+.+||+|.++.+....
T Consensus 1187 ~g~~~e~a~vlnitdrqfv~~s~ 1209 (1493)
T KOG2045|consen 1187 VGKVPEIALVLNITDRQFVTASG 1209 (1493)
T ss_pred ccccccceeeeeecchhheeecC
Confidence 99999999999999998755433
|
|
| >COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] | Back alignment and domain information |
|---|
| >KOG2044|consensus | Back alignment and domain information |
|---|
| >PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions | Back alignment and domain information |
|---|
| >cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases | Back alignment and domain information |
|---|
| >KOG2044|consensus | Back alignment and domain information |
|---|
| >PTZ00217 flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions | Back alignment and domain information |
|---|
| >COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] | Back alignment and domain information |
|---|
| >KOG2045|consensus | Back alignment and domain information |
|---|
| >PRK03980 flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >TIGR03674 fen_arch flap structure-specific endonuclease | Back alignment and domain information |
|---|
| >PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer | Back alignment and domain information |
|---|
| >smart00485 XPGN Xeroderma pigmentosum G N-region | Back alignment and domain information |
|---|
| >KOG2518|consensus | Back alignment and domain information |
|---|
| >smart00475 53EXOc 5'-3' exonuclease | Back alignment and domain information |
|---|
| >PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment | Back alignment and domain information |
|---|
| >cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1891 | ||||
| 2y35_A | 1140 | Crystal Structure Of Xrn1-Substrate Complex Length | 0.0 | ||
| 3pie_A | 1155 | Crystal Structure Of The 5'->3' Exoribonuclease Xrn | 1e-89 | ||
| 3pie_A | 1155 | Crystal Structure Of The 5'->3' Exoribonuclease Xrn | 3e-51 | ||
| 3fqd_A | 899 | Crystal Structure Of The S. Pombe Rat1-Rai1 Complex | 1e-68 | ||
| 3fqd_A | 899 | Crystal Structure Of The S. Pombe Rat1-Rai1 Complex | 8e-45 |
| >pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex Length = 1140 | Back alignment and structure |
|
| >pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q Mutant Length = 1155 | Back alignment and structure |
| >pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q Mutant Length = 1155 | Back alignment and structure |
| >pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex Length = 899 | Back alignment and structure |
| >pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex Length = 899 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} Length = 1140 | Back alignment and structure |
|---|
Score = 812 bits (2097), Expect = 0.0
Identities = 440/1107 (39%), Positives = 630/1107 (56%), Gaps = 65/1107 (5%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P++LFF+++DGVAPRAKMNQQR RRFR+A+EAE E KA ++GE L +RFDSNCITPG
Sbjct: 77 PQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE-LREHERFDSNCITPG 135
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RL + LR F+K KI+TD LW+ VILSG E PGEGEHKIMDYIRY
Sbjct: 136 TEFMVRLQEGLRAFLKTKISTDPLWQR---------CTVILSGQEAPGEGEHKIMDYIRY 186
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
MK++PDY+PN RHCLYGLDA LI+LGLCTHE +F +LREEVKF + + EET
Sbjct: 187 MKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKR-----TSVEET 241
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
+FFLLHL L+R+YLELEF L+ I +IDDWVLMGFL+GNDFIP+LP LHI
Sbjct: 242 RFFLLHLGLLREYLELEFDALRTD---EHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHI 298
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY+ Y + PTL G INE G LNL+R + F++ L + + F+E D++Y+
Sbjct: 299 SSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMN 358
Query: 438 GKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWR 497
K DV +S+ +D DL ALI + ++ +
Sbjct: 359 NKSEAFDMDVGEITESQNLDSDLGALIN--------------KSMLLYDDDSEEDCSDEN 404
Query: 498 TNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPH 557
EF +K ++Y K +E++ + Y+ A+QW L YYY G SW WYYP
Sbjct: 405 AVLLKEFQNYKRNFYRNKFKR-DPNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPF 463
Query: 558 HYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILE 617
HY P+ISD+K+ + + + MG PFLPFQQLLAVLPAAS +LLP Y +LM L SP+ E
Sbjct: 464 HYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAE 523
Query: 618 YYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTY 677
+YP EF +DLNGKK DWEAVVLIPFIDE +L+ AM E L+ EER RNRHGPM VY Y
Sbjct: 524 FYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERNRHGPMYVYKY 583
Query: 678 SNVNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLYVTHFPTLK 737
S V G A A+ + E + +I V+ + ++ FPT++
Sbjct: 584 STVAQGPMPAYPPLRALPVLYCTEVAKWSHEIAVNLPYSVCIELPNAARTVFFPGFPTMQ 643
Query: 738 HVQFTHKIENAKVKVFQQPSRNESIII-VQDKVQVPSLKQVADQILGKTIFINYPHLIEI 796
H+ F ++ N +VKVF+Q SRN++I++ + + +L VA Q LGK I + +PHL++
Sbjct: 644 HLPFDFELRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAVASQYLGKVIHVGWPHLVKA 703
Query: 797 RVQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVY 856
V VAT+D R+ + + + F K++ + + ++G+ N +VLVY
Sbjct: 704 IVVRVATRDQRVDSEGITL--------NDSRRFDSECKALQEHFINRMGIQFANYDVLVY 755
Query: 857 GQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESL-EYKTIDEIFYPGC 915
+ F +G + + ++ S Y Q V +L + ++ F G
Sbjct: 756 VRTFAGNSTEFRDKGALMVRDSWSSSVTGYPAQGVVADLTVWERMRKNFLNVEHYFPVGS 815
Query: 916 QCFALSNPHYGSGGCVI-STVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTV 974
F +++P+YGS G V + N I++S V+ EP ++ LQ++ +YL ++ V
Sbjct: 816 TIFLITDPYYGSEGTVQDPRLAYTNGRIQVSIMVRPEPKVNAARQLQEERDRDYLSTFQV 875
Query: 975 ASKLSISPLLLSRFTGSIFIIDSTEE----GAKRHNIGLNIKFSRKNEEVVGFTRRDETT 1030
+ L IS L R +G+++++ +HNIGL +K+ R+NEE G+ R
Sbjct: 876 CNLLRISGRTLGRLSGTVWVVLGPRRQKMENVTKHNIGLQLKYPRQNEERAGYCFRTN-- 933
Query: 1031 KKWFYTEQVVTLIKNYMKQFPEVFGFL-KDHSSDDIYLRDDVFPHQ-GEQRVAQIVSWLK 1088
+W+Y+ V L++NY +++P+V F + + DVFP+ G +RV ++ +W++
Sbjct: 934 NQWYYSSLAVDLMRNYCQRYPDVIDFFGDSNDRAEFVFEQDVFPNAVGHRRVEELANWVR 993
Query: 1089 EQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTC-EKVEKQITLFVKPNKLYIPKPTLDKLC 1147
+QPH K E CG+ V + + L+ AVD K + L VKP+ L P TL +
Sbjct: 994 QQPHMKVERISCGSKTVCRETIELLIAAVDDLRSLPVKHVKLQVKPHLLIKPNVTLPDVY 1053
Query: 1148 PDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGI----------VQGETSYDAMYDVVFDK 1197
+LFDRVV +R Y VP+G +GT+IGI ++ + D V+FD
Sbjct: 1054 RSK-RPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDS 1112
Query: 1198 PFPHGVKIR-CSESRGYRMPAQAMINL 1223
P P+ I +E R Y++P A++ +
Sbjct: 1113 PVPNCNNIHGIAEDRVYKVPEIALVII 1139
|
| >3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155 | Back alignment and structure |
|---|
| >3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155 | Back alignment and structure |
|---|
| >3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899 | Back alignment and structure |
|---|
| >3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1891 | |||
| 2y35_A | 1140 | LD22664P; hydrolase-DNA complex, RNA degradation, | 100.0 | |
| 3pie_A | 1155 | 5'->3' exoribonuclease (XRN1); beta berrel, tudor | 100.0 | |
| 3fqd_A | 899 | Protein DHP1, 5'-3' exoribonuclease 2; protein-pro | 100.0 | |
| 1b43_A | 340 | Protein (FEN-1); nuclease, DNA repair, DNA replica | 98.21 | |
| 1a76_A | 326 | Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea | 98.09 | |
| 3fqd_A | 899 | Protein DHP1, 5'-3' exoribonuclease 2; protein-pro | 98.03 | |
| 3qe9_Y | 352 | Exonuclease 1; exonuclease, hydrolase-DNA complex; | 98.01 | |
| 1rxw_A | 336 | Flap structure-specific endonuclease; helical clam | 97.93 | |
| 1ul1_X | 379 | Flap endonuclease-1; protein complex, DNA-binding | 97.33 | |
| 3ory_A | 363 | Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco | 97.24 | |
| 3pie_A | 1155 | 5'->3' exoribonuclease (XRN1); beta berrel, tudor | 97.2 | |
| 2y35_A | 1140 | LD22664P; hydrolase-DNA complex, RNA degradation, | 97.14 | |
| 3q8k_A | 341 | Flap endonuclease 1; helix-3 turn-helix, hydrophob | 96.69 | |
| 2izo_A | 346 | FEN1, flap structure-specific endonuclease; hydrol | 96.64 | |
| 1exn_A | 290 | 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent | 91.52 |
| >2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-283 Score=2695.05 Aligned_cols=1117 Identities=45% Similarity=0.814 Sum_probs=927.8
Q ss_pred CChhHHHHHHHhhcCCchhhhcccCCCCCCEEEEecCCcccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccceE
Q psy14280 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKL 80 (1891)
Q Consensus 1 MGVP~FfrWL~erYP~i~~~v~e~~ipefDnLYLDMNGIIH~Csh~~~~d~~~~~seeeif~~If~yID~L~~iVrPrKl 80 (1891)
||||+|||||++||||+++.+.+..+|+|||||||||||||+|+|+++.+++++.+|++||++||+|||+||++|||||+
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~~~~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkl 80 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRL 80 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETTTSCCCSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSE
T ss_pred CChhHHHHHHHHHCCchhhhccccCCCcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheecccee
Confidence 99999999999999999888888889999999999999999999999877778889999999999999999999999999
Q ss_pred EEEeecCCCcchhhhHHHhhhhhhhhHHHHHHHHHhhhCCCCCcccccccccccccCcccceeeeccCCCchhhhhhhhh
Q psy14280 81 FFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160 (1891)
Q Consensus 81 lyiAIDGVAPRAKMnQQRsRRFrsa~ea~~~~~~~k~~g~~l~~e~~fd~~~l~~~~p~k~~~~aiDGvaP~aKmnqQr~ 160 (1891)
||||||||||||||||||+||||+|++++..+
T Consensus 81 l~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~------------------------------------------------ 112 (1140)
T 2y35_A 81 FFLSVDGVAPRAKMNQQRSRRFRTAREAEQQE------------------------------------------------ 112 (1140)
T ss_dssp EEEECCCSCCHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred EEEEecCCCchhHHHHHHHHHhhhhhhhhhhH------------------------------------------------
Confidence 99999999999999999999999997654322
Q ss_pred ccccchHHHHHHHHHHHHhCCCCCCcccCCCCcccCCchHHHHHHHHHHHHHHHhhcCCcccccccccccccceEEEEcC
Q psy14280 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSG 240 (1891)
Q Consensus 161 rrf~s~keae~~~~ka~~~G~~lp~e~~FDSN~ITPGTeFM~kL~~~Lk~fI~~KistDp~W~~~~~~~~~~~lkVIlSg 240 (1891)
+++...|+.. +...||||||||||+||.+|+++|++||++|+++|+.|++ ++|||||
T Consensus 113 -------------~~~~~~g~~~-~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~---------~~Vi~S~ 169 (1140)
T 2y35_A 113 -------------AKAAQRGELR-EHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQR---------CTVILSG 169 (1140)
T ss_dssp -------------HHHHHC--------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSS---------SEEEEEC
T ss_pred -------------HHHhhcCCcc-ccccCCccccCCCcHHHHHHHHHHHHHHHHHhccCccccc---------eEEEEeC
Confidence 1223334332 3468999999999999999999999999999999999999 9999999
Q ss_pred CCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccCCCCcceE
Q psy14280 241 HETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFF 320 (1891)
Q Consensus 241 s~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~~~~~~F~ 320 (1891)
++||||||||||+|||.++++|+||||+||||||+|||||||||+||+|||+||||+++|++..++. ..+++.|+
T Consensus 170 ~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~-----~~~~~~f~ 244 (1140)
T 2y35_A 170 QEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRT-----SVEETRFF 244 (1140)
T ss_dssp SSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCC-----CGGGCEEE
T ss_pred CCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccc-----cccccceE
Confidence 9999999999999999999999999999999999999999999999999999999999998765432 23557899
Q ss_pred EEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCCCCCCccccCCcHHHHHHHHHHHcccCCCcc
Q psy14280 321 LLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYI 400 (1891)
Q Consensus 321 llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLPhLP~L~I~eGald~L~~~Yk~~Lp~l~gYL 400 (1891)
++||++|||||.+||..+.. ..+++|+|||||||||||||+|||||||||+|+|++||++.||++|++.+|.++|||
T Consensus 245 ~l~i~~lReyL~~ef~~~~~---~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~~gai~~L~~~Y~~~~~~~~gyl 321 (1140)
T 2y35_A 245 LLHLGLLREYLELEFDALRT---DEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNI 321 (1140)
T ss_dssp EEEHHHHHHHHHHHGGGGCC---SSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTTTTHHHHHHHHHHHHGGGSSSCS
T ss_pred EEEehHHHHHHHHHhhhhcc---ccccccHHHHHHHHHHHHHHhCCccCCCCCccccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999987653 368999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeecHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhCCCcchhhhhhccccCCccHHHHHhhcCCCCCCChhhhhc
Q psy14280 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLN 480 (1891)
Q Consensus 401 te~G~INl~rL~~fL~~Ls~~E~~~F~~~~~d~~~~e~k~~~k~~e~~k~~~~k~~~~~l~~l~k~~~~~~~d~~~~~~~ 480 (1891)
|++|+||++||+.||..|+++|.+.|+++..|.+|++.|..+.-.........+....++.++++......+++++
T Consensus 322 ~~~g~in~~~l~~~l~~l~~~E~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 397 (1140)
T 2y35_A 322 NENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSE---- 397 (1140)
T ss_dssp EETTEECHHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------
T ss_pred cCCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccchhhccccccchhHHHHHHHhhhhccccccc----
Confidence 9999999999999999999999999999888888776553211000000000001112222233222111111100
Q ss_pred ccccccccCCCcchhhhccccccccchHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhhhhhcccccccCcCCCCCccccC
Q psy14280 481 YANYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYA 560 (1891)
Q Consensus 481 ~~~~~~i~~~~d~ee~~~~~~~~~~~~K~~YY~~Kf~~~~~~~e~l~~i~~~YveGLqWVL~YYy~GcpSW~WyYPYHYA 560 (1891)
++.+++.+.+..++.+||++||++||+.+. ++++++++|++|||||||||+|||+|||||+||||||||
T Consensus 398 ----------~~~~~e~~~~~~~~~~~k~~YY~~Kf~~~~-~~~~~~~~~~~YveGl~Wvl~YYy~G~~SW~WyYpyhYA 466 (1140)
T 2y35_A 398 ----------EDCSDENAVLLKEFQNYKRNFYRNKFKRDP-NDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYT 466 (1140)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHHHHHHHHHHTSCSCSSCCCCCSSC
T ss_pred ----------cccchhhhhhhhhhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCcC
Confidence 011111223344578999999999999875 567899999999999999999999999999999999999
Q ss_pred CCccccccccccccccccCCCCChHhHhhhccCCcccCCCCHhhHhhhcCCCCcccccCCCcceecCCCCccceeeEEec
Q psy14280 561 PYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLI 640 (1891)
Q Consensus 561 P~iSDl~~~~~~~i~Fe~g~Pf~PfeQLmaVLPp~Sk~LLP~~yr~LMtdp~SPI~dFYP~~FeiDlNGKk~~WegVVLL 640 (1891)
||+|||.++.+++++|++|+||+||||||||||++|+++||++||+||++|+|||+||||++|++|+|||+++|||||||
T Consensus 467 P~~sDl~~~~~~~i~F~~g~Pf~PfeQLm~VLP~~S~~~LP~~~~~Lm~~~~Spi~dfYP~~f~iD~nGk~~~we~Vvll 546 (1140)
T 2y35_A 467 PFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLI 546 (1140)
T ss_dssp CCGGGCCCCTTCCCCCCCCCCCCHHHHHHHHCCGGGGGGSCGGGHHHHHCTTCTTGGGSCSSCCCCCSSCCSGGGSCCCC
T ss_pred chHHHHHhhccccccccCCCCCChHHHHHhhcChhhhhhCCHHHHHhhcCCCCchhHhCccceeecCCCCcCcEEeEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcChHHHHHHHHhhcCCCCHHHHhhccCCCcEEEEecCCCCccccCCCCCCCcccccceeecccCCccc--cCCccccc
Q psy14280 641 PFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKPLYRDDIY--VHPNKLRK 718 (1891)
Q Consensus 641 PFIDe~rLl~Am~~~~~~LT~EEk~RN~~G~~llF~yd~~~~~~~~Sp~~Fpdi~~~~~~~~~~~~~~~~--~p~~~l~~ 718 (1891)
||||++||++||+++++.||+||++||++|.+++|.|++...+.+++...|.++.+|+|.+......++. +|.. ...
T Consensus 547 PFIde~~Ll~a~~~~~~~Lt~eE~~RN~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~ 625 (1140)
T 2y35_A 547 PFIDEGRLLAAMLPCEAQLSLEERERNRHGPMYVYKYSTVAQGPMPAYPPLRALPVLYCTEVAKWSHEIAVNLPYS-VCI 625 (1140)
T ss_dssp CCCCHHHHHHTTHHHHHHSCHHHHHTTSCCCEEEEEECSSCCCCBCCBTTBCCBSCCCEEEEEECGGGSCCCCSSC-SCS
T ss_pred CcCCHHHHHHHHHhccccCCHHHHhhcccCCceEEEeccccCcccCCCCCccccccccccchhhccccccccCCch-hhc
Confidence 9999999999999999999999999999999999999998876555433355899999987643322222 2222 112
Q ss_pred cCCccccccccccCCCccccccceeeeecceeEEecCCCCCCcEEEEeccCCC-ccHHHHHHHHcCCEEEecCCccceEE
Q psy14280 719 GLCQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQV-PSLKQVADQILGKTIFINYPHLIEIR 797 (1891)
Q Consensus 719 gL~~gv~~~~~~~GFPTL~~Lp~t~~L~~~gV~VFq~pSR~eSMiL~I~~~~~-~sl~eiAk~LLGK~VyVgWP~L~EAK 797 (1891)
+++.| ....+++|||||+||||+++|+.++|+|||++|||+||+|++.+... .++.++|+++|||+||||||||+|||
T Consensus 626 ~~~~~-~~~~~~~GFPtl~~l~~~~~l~~~~V~vF~~~Sr~~smvl~~~~~~~~~~~~~~a~~~LGk~v~v~wP~L~EAk 704 (1140)
T 2y35_A 626 ELPNA-ARTVFFPGFPTMQHLPFDFELRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAVASQYLGKVIHVGWPHLVKAI 704 (1140)
T ss_dssp CCTTS-CSSSBBTTBCCSTTSCEEEEEECCCCCSSSSCCSSCEEEEEECCCSSCSSHHHHHHHHTTCEEEESSSSCEEEE
T ss_pred cCCCc-ccccCCCCCCccccccceeEEeccceEEeCCCCCCCeEEEeeccccccCCHHHHHHHHcCCeEEecCCceEEEE
Confidence 34444 33557899999999999999999999999999999999999998754 47899999999999999999999999
Q ss_pred EEEEecCCeeEEEecCCCCcccccchhHHHHHHHHHHHHHHHHhcccceeecCeeEEEEEEeecceeEEecCCCceeEEe
Q psy14280 798 VQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQR 877 (1891)
Q Consensus 798 VVsVSD~~~ky~l~~~~g~~~~~~~~~e~~~w~k~~~~I~e~Y~KR~GI~IGev~VLVhVrpL~Glkyv~~~~Gav~lvK 877 (1891)
||+|||+++++... | +..++.+.|.+++++|+++|++|+||++|++++||||+||+|++|+++.+|++..++
T Consensus 705 Vv~Vsd~~~~~~~~---g-----~~~~~~~~~~~~~~~i~~~y~kr~GI~ig~v~vLv~V~~l~G~~~~~~~~G~~~~~~ 776 (1140)
T 2y35_A 705 VVRVATRDQRVDSE---G-----ITLNDSRRFDSECKALQEHFINRMGIQFANYDVLVYVRTFAGNSTEFRDKGALMVRD 776 (1140)
T ss_dssp EEEEEESSEEEETT---E-----EEECCHHHHHHHHHHHHHHHHHHHCBCCSCCSEEEEEEECCCEEEEEETTTEEEEEE
T ss_pred EEEEEcCccccccC---C-----CChHHHHHHHHHHHHHHHHHhhccceeecceEEEEEEEEecceeeeecCCCcEEeec
Confidence 99999999876421 2 233457789999999999999999999999999999999999999999999976667
Q ss_pred eccccccceecchhccccccccccC-ccCCcccccCCCCEEEEeCCCCCCCcEEEeccc-cccCcEEEEEEEecCCCChh
Q psy14280 878 TFIRSTVTYAYQSAVLNLQQARESL-EYKTIDEIFYPGCQCFALSNPHYGSGGCVISTV-KEENSFIKLSFKVQQEPDLS 955 (1891)
Q Consensus 878 ~fS~~e~~YPlQlIV~DV~~~D~Rf-~~~pIeEeFPiGSkVffLG~~~YGs~G~Vvg~~-~~~~~rlkVsv~v~~EP~~~ 955 (1891)
+|++.+++||+|+||+||.+.|+.. ++.+|+|+||+||+|||||+++|||+|+|+++. ..++++|+|.+.+.+||+++
T Consensus 777 ~~s~~~~~yp~Q~vV~~v~~~d~~~~~~~~iee~FP~gs~vf~LG~~~YG~~g~V~~~~~~~~~~~l~v~~~v~~eP~~~ 856 (1140)
T 2y35_A 777 SWSSSVTGYPAQGVVADLTVWERMRKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQDPRLAYTNGRIQVSIMVRPEPKVN 856 (1140)
T ss_dssp CCCSSCEEEEGGGCEESCCBCCC--CCCCSHHHHSCTTCEEEECSGGGTTCEEEEEEEC------CEEEEECCCCCCCCH
T ss_pred ccCCcccccchhhccccccccchhhccCcChHhhCCCCCEEEEECCCCCCCceEEccccccCcCCeEEEEEeccCCCCch
Confidence 9999999999999999999988755 789999999999999999999999999999864 23467899999999999999
Q ss_pred hhhhhcccccccccChHHHHHHcCCCHhhHhhhcceEEEecCCcc----CcceeeeeeeeeeccCCceecCceeccCCCC
Q psy14280 956 DLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE----GAKRHNIGLNIKFSRKNEEVVGFTRRDETTK 1031 (1891)
Q Consensus 956 ~~~~~~~~~~~~Y~Ps~~VAk~LGIspl~LSRITGS~~V~~gsr~----~~~KiNIGLNLKF~~RnqkVlGYTRk~~~~~ 1031 (1891)
..++.+++...+|+|+|+||++|||||++||||||||+|..++++ +++|+||||||||++|+++|+||||| .++
T Consensus 857 ~~~~~~~~~~~~Y~ps~~vAr~Lgis~~~LsrITgs~~V~~~~~~~~~e~~~k~NIGLnLKf~~k~~kVlGYtRr--~~~ 934 (1140)
T 2y35_A 857 AARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVLGPRRQKMENVTKHNIGLQLKYPRQNEERAGYCFR--TNN 934 (1140)
T ss_dssp HHHHHHHHHHHCCEEHHHHHHHTTCCHHHHHHHHSCCBCC-------------CBCSCCCEETTTTEEETTTEEE--SSS
T ss_pred HHHHHHHhhccCCccHHHHHHHcCCCHHHHHHhhceEEEEeCCcccccccccceecceeeeeccccCccCCcccC--CCC
Confidence 988888888899999999999999999999999999999875432 45899999999999999999999999 889
Q ss_pred ceEecHHHHHHHHHHHHhChHHHHHhhcC-CCCCccccCCCCCc-chHHHHHHHHHHHhhCCCCccccccCCccccCHHH
Q psy14280 1032 KWFYTEQVVTLIKNYMKQFPEVFGFLKDH-SSDDIYLRDDVFPH-QGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKV 1109 (1891)
Q Consensus 1032 ~WEYS~kAV~LI~eY~~kFPeLF~~L~~~-~~~d~~~~~DIFp~-~~~~kLkEIkaWLKe~~~~~le~Vscgse~Ldke~ 1109 (1891)
+||||++||+||++|+++||+||++|++. +.+++++++||||+ .++++|++|++|||+++++++++|||++++|++++
T Consensus 935 ~WeyS~~Ai~LI~eY~~kFP~lf~~L~~~~~~~d~~~~~Difp~~~~~~~l~ei~~WLK~~~~~~~e~Vs~~s~~L~~~~ 1014 (1140)
T 2y35_A 935 QWYYSSLAVDLMRNYCQRYPDVIDFFGDSNDRAEFVFEQDVFPNAVGHRRVEELANWVRQQPHMKVERISCGSKTVCRET 1014 (1140)
T ss_dssp CEEECHHHHHHHHHHHHHCHHHHHHHHHCC----------------CTTHHHHHHHHHHHSGGGTSCEEETTCBCCCHHH
T ss_pred ceeEcHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHhhcCCcchHHHHHHHHHHHHhCCcCCceeecccceecCHHH
Confidence 99999999999999999999999999884 55678999999997 67889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc-ccEeeecCCCccccccCCCCCcCCCCCCCcccCCeEEEEeCCCCccccCceEEEEEecCCC---
Q psy14280 1110 VSLIEHAVDTCEKVE-KQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGET--- 1185 (1891)
Q Consensus 1110 IkaIE~~idk~~k~~-K~v~l~Vkp~~L~kP~~~~~~L~PD~~q~F~LGDRVV~VrdsG~VPfG~kGTVVGI~~~~~--- 1185 (1891)
|++||++++++.+.+ +.++++|+|++|++|..+...+.+ .+|+|+|||||||||++|+||||+|||||||++.++
T Consensus 1015 V~~IE~~~d~~~~~~~~~~~l~v~P~aL~kP~~~~~d~~r-~~q~F~LgDRVV~V~dsg~VP~g~rGTVVGI~~~~~~~~ 1093 (1140)
T 2y35_A 1015 IELLIAAVDDLRSLPVKHVKLQVKPHLLIKPNVTLPDVYR-SKRPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNP 1093 (1140)
T ss_dssp HHHHHHHHHHHC----CCEEEEECGGGEECTTTSCTTTTS-CSSCCCTTCEEEECSCBTTBCTTCEEEECCBEEEECSSC
T ss_pred HHHHHHHHHHHhhCCCccceeccCHHHeeChhhccccccC-CCCcccCcCeEEEEccCCCCcccceeEEEEEecCCCCcc
Confidence 999999999988544 778889999999999987554433 379999999999999999999999999999998763
Q ss_pred -------CccceEEEEeecccCCCCccc-cCCCccccccCcceeecC
Q psy14280 1186 -------SYDAMYDVVFDKPFPHGVKIR-CSESRGYRMPAQAMINLS 1224 (1891)
Q Consensus 1186 -------~~d~~vDVLFDepF~GGttL~-cs~~RG~~Vp~ssLLNLT 1224 (1891)
..++++|||||+||+||++|+ |++.|||+||.++||||+
T Consensus 1094 ~r~e~~~~~~~~~dVlFD~~F~gG~~i~G~~~~r~yr~p~~~l~ni~ 1140 (1140)
T 2y35_A 1094 VRLECVHAVDTFCKVLFDSPVPNCNNIHGIAEDRVYKVPEIALVIIK 1140 (1140)
T ss_dssp SSTTTTTCEEEEEEEEESSCC------------CEEEEEGGGEEECC
T ss_pred cccccccccCceeEEEecCCcCCCcccCCccccceeeccccceEecC
Confidence 237889999999999999998 777999999999999995
|
| >3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A | Back alignment and structure |
|---|
| >3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A | Back alignment and structure |
|---|
| >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A | Back alignment and structure |
|---|
| >3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* | Back alignment and structure |
|---|
| >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A | Back alignment and structure |
|---|
| >1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 | Back alignment and structure |
|---|
| >3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} | Back alignment and structure |
|---|
| >3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A | Back alignment and structure |
|---|
| >2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* | Back alignment and structure |
|---|
| >2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1891 | |||
| d1ul1x2 | 216 | Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo | 96.02 | |
| d1rxwa2 | 217 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc | 92.84 | |
| d1a77a2 | 207 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met | 87.37 | |
| d1b43a2 | 219 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr | 85.21 |
| >d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PIN domain-like superfamily: PIN domain-like family: 5' to 3' exonuclease catalytic domain domain: Flap endonuclease-1 (Fen-1 nuclease) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0032 Score=67.01 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=52.6
Q ss_pred ChhHHHHHHHhhcCCchhh--hcccCCCCCCEEEEecCCcccccccCCCC--CC-CCC-CCHHHHHHHHHHHHHHHH-hh
Q psy14280 2 GVPKFFRYISERYPCLSEV--VREYQIPEFDNLYLDMNGIIHNCSHPNDN--DP-HFR-ITEKQIFQDIFHYIEILF-RM 74 (1891)
Q Consensus 2 GVP~FfrWL~erYP~i~~~--v~e~~ipefDnLYLDMNGIIH~Csh~~~~--d~-~~~-~seeeif~~If~yID~L~-~i 74 (1891)
||.|++.+|.+.-|...+. +.+.. ---|=||.+..||.+...... +. ... -....-+..+|..+..|. .-
T Consensus 1 GIkgL~~~l~~~~~~~i~~~~l~~l~---gk~vaIDas~~l~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~ 77 (216)
T d1ul1x2 1 GIQGLAKLIADVAPSAIRENDIKSYF---GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENG 77 (216)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGT---TCCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHhCcCceEEecHHHcC---CCEEEEEeHHHHHHHHHHhccccchhhccCCCCcHHHHHHHHHHHHHHHcC
Confidence 9999999999988854332 22221 126889999999975432111 00 000 001123344444444443 23
Q ss_pred cccceEEEEeecCCCcchhhhHHHhhhhh
Q psy14280 75 IQPKKLFFMAIDGVAPRAKMNQQRGRRFR 103 (1891)
Q Consensus 75 VrPrKllyiAIDGVAPRAKMnQQRsRRFr 103 (1891)
|+ .++.+||-+|-.|......||-+
T Consensus 78 I~----pifVFDG~~~~~K~~~~~~R~~~ 102 (216)
T d1ul1x2 78 IK----PVYVFDGKPPQLKSGELAKRSER 102 (216)
T ss_dssp CC----EEEEECCSCCSCCCCCCCCC---
T ss_pred Ce----EEEEEcCCCCccccchhhhhhhh
Confidence 33 46778999999998776666544
|
| >d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|