Psyllid ID: psy14464

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----

MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL

ccEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHcc

cEEEEcHHHHHHHccHHHHHHHHccccccEEEEEHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHcccccEEEHEHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHc

MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCklgsmggsdasirpfadgsTRKLAEACRRFlvnpardpdIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVassgkpactyGVVTTLVNLCNAYDKQEIIPEMIELAKFAkhhipedhelddpdfvTKRLLVL

MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFlvnpardpdirRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIpedhelddpdfVTKRLLVL

MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL

**IISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIP******************

*******ITSIIKQGVDILK*********IRVRALVGLCK*********************LAEACRRFL***********WAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCN*******************************DFVTKRLLVL

MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL

MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMG*S**SIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		175	2.2.26 [Sep-21-2011]
D7REX8		927	Protein unc-45 homolog B	yes	N/A	0.925	0.174	0.546	1e-49
Q6DGE9		934	Protein unc-45 homolog B	yes	N/A	0.925	0.173	0.546	1e-48
Q68F64		927	Protein unc-45 homolog B	N/A	N/A	0.925	0.174	0.539	2e-48
Q8IWX7		931	Protein unc-45 homolog B	yes	N/A	0.942	0.177	0.543	3e-48
Q8CGY6		931	Protein unc-45 homolog B	yes	N/A	0.942	0.177	0.543	2e-47
Q5RAP0		929	Protein unc-45 homolog A	yes	N/A	0.925	0.174	0.527	5e-44
Q99KD5		944	Protein unc-45 homolog A	no	N/A	0.925	0.171	0.527	7e-44
Q32PZ3		944	Protein unc-45 homolog A	no	N/A	0.925	0.171	0.527	1e-43
Q9H3U1		944	Protein unc-45 homolog A	no	N/A	0.925	0.171	0.521	4e-43

>sp\|D7REX8\|UN45B_XENTR Protein unc-45 homolog B OS=Xenopus tropicalis GN=unc45b PE=1 SV=1	Back alignment and function desciption

 Score =  195 bits (495), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 121/163 (74%), Gaps = 1/163 (0%)

Query: 11  IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
           II  GV +LK +Y  +KNE I++RALVGLCKLGS GG+D ++R FA+GST KLA+ CR++
Sbjct: 455 IITNGVSLLKDIYKKTKNEKIKIRALVGLCKLGSAGGTDYALRQFAEGSTDKLAKQCRKW 514

Query: 70  LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
           L NP+ D   R+WA EGLAYLTLDA+VK+  +ED+ +L A+ +++ +      Y V TTL
Sbjct: 515 LCNPSLDIQTRKWAVEGLAYLTLDADVKDEFVEDEQSLKAMFELSKTSDKTILYSVATTL 574

Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
           VN  N+YD +E+IPEM++LAKF+K H+PE H  D  DFV KR+
Sbjct: 575 VNCTNSYDVKEVIPEMVQLAKFSKQHVPEQHPKDKKDFVEKRV 617

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development.
Xenopus tropicalis (taxid: 8364)

>sp\|Q6DGE9\|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2	Back alignment and function description

>sp\|Q68F64\|UN45B_XENLA Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1	Back alignment and function description

>sp\|Q8IWX7\|UN45B_HUMAN Protein unc-45 homolog B OS=Homo sapiens GN=UNC45B PE=2 SV=1	Back alignment and function description

>sp\|Q8CGY6\|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus GN=Unc45b PE=1 SV=1	Back alignment and function description

>sp\|Q5RAP0\|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1	Back alignment and function description

>sp\|Q99KD5\|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2	Back alignment and function description

>sp\|Q32PZ3\|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1	Back alignment and function description

>sp\|Q9H3U1\|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		175
357628299		872	hypothetical protein KGM_14414 [Danaus p	0.948	0.190	0.753	1e-73
183979249		943	similar to CG2708-PA [Papilio xuthus]	0.948	0.176	0.734	8e-72
383850080		940	PREDICTED: protein unc-45 homolog B-like	0.954	0.177	0.736	2e-71
332024716		939	Protein unc-45-like protein A [Acromyrme	0.954	0.177	0.730	3e-71
345492367		946	PREDICTED: protein unc-45 homolog B-like	0.954	0.176	0.742	6e-71
307188554		939	UNC45-like protein A [Camponotus florida	0.954	0.177	0.730	2e-70
380027387		941	PREDICTED: protein unc-45 homolog B-like	0.954	0.177	0.730	2e-70
91084547		923	PREDICTED: similar to AGAP003727-PA [Tri	0.942	0.178	0.751	3e-70
48105896		942	PREDICTED: protein unc-45 homolog A [Api	0.954	0.177	0.730	3e-70
350424382		940	PREDICTED: protein unc-45 homolog B-like	0.954	0.177	0.724	3e-70

>gi\|357628299\|gb\|EHJ77688.1\| hypothetical protein KGM_14414 [Danaus plexippus]	Back alignment and taxonomy information

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 125/166 (75%), Positives = 150/166 (90%)

Query: 10  SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
           +II +GVDILK+LY  KN+ +RVRALVGLCK+GS GG DASIRPFADGST+KLAEACR+F
Sbjct: 396 TIINKGVDILKKLYSCKNDAVRVRALVGLCKIGSFGGDDASIRPFADGSTKKLAEACRKF 455

Query: 70  LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
           LVNPA+D D+R+WAAEGL+YLTLDA+VKE L++DKPA+ AL+++A SG  +C YGVVTTL
Sbjct: 456 LVNPAKDKDMRKWAAEGLSYLTLDADVKEKLVDDKPAIQALIELAKSGDQSCLYGVVTTL 515

Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL 175
           VNLCNAY+KQE++PEM+ELAKFAKHHIPE HELDDPDFV KRL +L
Sbjct: 516 VNLCNAYEKQEVMPEMLELAKFAKHHIPEQHELDDPDFVNKRLTIL 561

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|183979249\|dbj\|BAG30786.1\| similar to CG2708-PA [Papilio xuthus]	Back alignment and taxonomy information

>gi\|383850080\|ref\|XP_003700645.1\| PREDICTED: protein unc-45 homolog B-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|332024716\|gb\|EGI64905.1\| Protein unc-45-like protein A [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|345492367\|ref\|XP_001600626.2\| PREDICTED: protein unc-45 homolog B-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|307188554\|gb\|EFN73289.1\| UNC45-like protein A [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|380027387\|ref\|XP_003697407.1\| PREDICTED: protein unc-45 homolog B-like [Apis florea]	Back alignment and taxonomy information

>gi\|91084547\|ref\|XP_973113.1\| PREDICTED: similar to AGAP003727-PA [Tribolium castaneum] gi\|270009248\|gb\|EFA05696.1\| translocase of outer membrane 34 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|48105896\|ref\|XP_396019.1\| PREDICTED: protein unc-45 homolog A [Apis mellifera]	Back alignment and taxonomy information

>gi\|350424382\|ref\|XP_003493777.1\| PREDICTED: protein unc-45 homolog B-like [Bombus impatiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		175
FB\|FBgn0010812		947	unc-45 [Drosophila melanogaste	0.948	0.175	0.728	5.5e-63
UNIPROTKB\|F1S166		929	UNC45B "Uncharacterized protei	0.942	0.177	0.556	3.7e-44
ZFIN\|ZDB-GENE-020919-3		934	unc45b "unc-45 homolog B (C. e	0.92	0.172	0.549	3.8e-44
UNIPROTKB\|F1MFZ5		931	UNC45B "Uncharacterized protei	0.942	0.177	0.544	4.8e-44
UNIPROTKB\|F1PUV3		943	UNC45B "Uncharacterized protei	0.942	0.174	0.538	6.4e-44
UNIPROTKB\|Q8IWX7		931	UNC45B "Protein unc-45 homolog	0.942	0.177	0.543	1e-43
UNIPROTKB\|F1NXC5		953	UNC45B "Uncharacterized protei	0.937	0.172	0.521	2.3e-43
RGD\|1305666		735	Unc45b "unc-45 homolog B (C. e	0.942	0.224	0.534	3.4e-43
MGI\|MGI:2443377		931	Unc45b "unc-45 homolog B (C. e	0.942	0.177	0.543	7.4e-43
UNIPROTKB\|F1P0Z6		839	F1P0Z6 "Uncharacterized protei	0.925	0.193	0.546	1.4e-42

FB\|FBgn0010812 unc-45 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 646 (232.5 bits), Expect = 5.5e-63, P = 5.5e-63
 Identities = 121/166 (72%), Positives = 141/166 (84%)

Query:    10 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
             ++ +QGVDILKRLY SKN+ IRVRALVGLCKLGS GG DA+IRPF DG+  KLAEACRRF
Sbjct:   463 ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRF 522

Query:    70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
             L+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK ++ AL+D+A  G  +C YGVVTT 
Sbjct:   523 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 582

Query:   130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL 175
             VNLCNAY+KQE++PEMIELAKFAK HIPE+HELDD DF+ KR+ VL
Sbjct:   583 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 628

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0034605 "cellular response to heat" evidence=IDA

GO:0007525 "somatic muscle development" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

UNIPROTKB\|F1S166 UNC45B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020919-3 unc45b "unc-45 homolog B (C. elegans)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MFZ5 UNC45B "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PUV3 UNC45B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IWX7 UNC45B "Protein unc-45 homolog B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NXC5 UNC45B "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1305666 Unc45b "unc-45 homolog B (C. elegans)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2443377 Unc45b "unc-45 homolog B (C. elegans)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0Z6 F1P0Z6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D7REX8	UN45B_XENTR	No assigned EC number	0.5460	0.9257	0.1747	yes	N/A
Q8IWX7	UN45B_HUMAN	No assigned EC number	0.5438	0.9428	0.1772	yes	N/A
Q5RAP0	UN45A_PONAB	No assigned EC number	0.5276	0.9257	0.1743	yes	N/A
Q6DGE9	UN45B_DANRE	No assigned EC number	0.5460	0.9257	0.1734	yes	N/A
Q8CGY6	UN45B_MOUSE	No assigned EC number	0.5438	0.9428	0.1772	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		175
pfam11701		155	pfam11701, UNC45-central, Myosin-binding striated	5e-05

>gnl\|CDD\|221172 pfam11701, UNC45-central, Myosin-binding striated muscle assembly central	Back alignment and domain information

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 11  IIKQGVDILKRLYM-SKNENIRVRALVGLCKL 41
           I K G++ LK LY  SK++ I+V A V LCKL
Sbjct: 124 ISKNGLEWLKDLYKNSKDDEIKVLAAVVLCKL 155

The UNC-45 or small muscle protein 1 of C.elegans is expressed in two forms from different genomic positions in mammals, as a general tissue protein UNC-45a and a specific form Unc-45b expressed only in striated and skeletal muscle. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) domains towards their N-terminal, a UCS domain at the C-terminal that contains a number of Arm repeats pfam00514 and this central region of approximately 400 residues. Both the general form and the muscle form of UNC-45 function in myotube formation through cell fusion. Myofibril formation requires both GC and SM UNC-45, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils. The S. pombe Rng3p, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90. The exact function of this central region is not known. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		175
KOG4151\|consensus		748		99.54
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.56
PRK09687		280	putative lyase; Provisional	95.58
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.35
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	92.88
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	92.24
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	91.51
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	91.38
PRK09687		280	putative lyase; Provisional	91.35
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	89.26
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	88.6
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	87.19
PF05804		708	KAP: Kinesin-associated protein (KAP)	86.28
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	83.9
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	83.65
KOG4224\|consensus		550		81.94
TIGR02270		410	conserved hypothetical protein. Members are found	81.13

>KOG4151\|consensus	Back alignment and domain information

Probab=99.54  E-value=3.1e-15  Score=143.42  Aligned_cols=161  Identities=20%  Similarity=0.156  Sum_probs=147.6

Q ss_pred             hHHHHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhh
Q psy14464          7 SITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEG   86 (175)
Q Consensus         7 ~~~~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEG   86 (175)
                      +|.-.+..|+.+|+.+|.+.++-+++++.+++|+.+..++++....+++++....|++.||.|++..+++.+.|      
T Consensus       302 laql~~~~~~~~lR~ii~~~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~i~l~~~~r~~~ve~s~~qd~r------  375 (748)
T KOG4151|consen  302 LAQLPLNCTVKILREIIHSFPSLRAVLIKYRDTEGDLVTITTTAELRLAESAVIKLGKTLRFYVVEVSPEQDPR------  375 (748)
T ss_pred             HHhcchhhchHHHHHHHhcccchhhheeeeccCCcceeeeeehhhhhhhhHHHHHHHHHhhhheeecCccccch------
Confidence            45556788999999999998888899999999999999888888889999999999999999999887776666      


Q ss_pred             hhhhccCHHHHHHHhhCHHHHHHHHHHhhcCC-CCcchh-hhHHHHhcccCCCCC-CcchHHHHHHhhhcCCCCCCCCCC
Q psy14464         87 LAYLTLDAEVKEALIEDKPALAALVDVASSGK-PACTYG-VVTTLVNLCNAYDKQ-EIIPEMIELAKFAKHHIPEDHELD  163 (175)
Q Consensus        87 LAYlSL~p~VKE~L~~D~~~Lk~L~~llk~~d-~s~~YG-~lsIl~NLTn~Y~~~-e~~~~l~~L~~ya~~~~pe~~pld  163 (175)
                        |+|+++++||++++|..+++++..+...++ +++.|+ +.|++.|.+|.|..+ |..++|-||++|++||+|+.||+|
T Consensus       376 --y~s~~a~~ke~~i~d~~s~~aln~l~~~~~~~~~~~~~lg~~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n  453 (748)
T KOG4151|consen  376 --YLSIDAELKELKIEDSSSSKALNGLKGDAVESYLDLHELGMKLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLN  453 (748)
T ss_pred             --hhccccchhhhhccccchHHHHHhhhcccccccccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccc
Confidence              999999999999999999999999998874 489999 999999999999988 889999999999999999999999


Q ss_pred             ChHHHHHHhhhC
Q psy14464        164 DPDFVTKRLLVL  175 (175)
Q Consensus       164 ~d~~V~~R~~~L  175 (175)
                      .-+++..|++++
T Consensus       454 ~~~v~~~r~rk~  465 (748)
T KOG4151|consen  454 WGNVHMSRARKR  465 (748)
T ss_pred             cchHHHHHHHHh
Confidence            999999998863

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG4224\|consensus	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		175
3now_A		810	Unc-45 From Drosophila Melanogaster Length = 810		1e-71

>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster Length = 810

Back alignment and structure

Iteration: 1

Score = 265 bits (676), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 121/166 (72%), Positives = 141/166 (84%) Query: 10 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69 ++ +QGVDILKRLY SKN+ IRVRALVGLCKLGS GG DA+IRPF DG+ KLAEACRRF Sbjct: 326 ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRF 385 Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129 L+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK ++ AL+D+A G +C YGVVTT Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445 Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL 175 VNLCNAY+KQE++PEMIELAKFAK HIPE+HELDD DF+ KR+ VL Sbjct: 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491

PyMOL of 3now

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		175
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-46
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	9e-35
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-05
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	2e-04
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-04
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	6e-04
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	7e-04

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

 Score =  159 bits (403), Expect = 5e-46
 Identities = 121/165 (73%), Positives = 140/165 (84%)

Query: 11  IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL 70
           + +QGVDILKRLY SKN+ IRVRALVGLCKLGS GG DA+IRPF DG+  KLAEACRRFL
Sbjct: 327 LCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL 386

Query: 71  VNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLV 130
           + P +D DIRRWAA+GLAYLTLDAE KE LIEDK ++ AL+D+A  G  +C YGVVTT V
Sbjct: 387 IKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV 446

Query: 131 NLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL 175
           NLCNAY+KQE++PEMIELAKFAK HIPE+HELDD DF+ KR+ VL
Sbjct: 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491

PyMOL of 3now

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		175
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	100.0
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.45
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.06
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.98
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.91
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	96.88
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.71
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	96.6
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	96.53
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.49
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.29
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.01
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	95.89
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	95.81
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	95.72
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.57
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	95.51
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	95.32
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	95.06
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	95.01
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.0
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	94.6
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	94.35
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.34
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	94.32
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	94.31
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	94.21
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	94.18
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	94.12
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	93.82
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	93.67
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	93.43
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	93.22
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	92.88
3nmz_A		458	APC variant protein; protein-protein complex, arma	92.56
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	92.29
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	92.05
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	91.71
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	91.64
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	91.56
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	90.91
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	90.45
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	89.86
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	88.55
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	84.56
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	84.32
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	83.54

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.2e-33  Score=270.34  Aligned_cols=159  Identities=16%  Similarity=0.198  Sum_probs=119.2

Q ss_pred             hhhHH-HHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHH
Q psy14464          5 SHSIT-SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWA   83 (175)
Q Consensus         5 ~~~~~-~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~a   83 (175)
                      .+.|| +|.+++++||..++++  +.+|++|+|+|||||++++.       +++++.+|+++|++||.++  +.+.++||
T Consensus       286 ~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~-------~~~si~~La~~~~~~L~~~--~~~~~~~A  354 (778)
T 3opb_A          286 DETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKL-------TCINLKQLSEIFINAISRR--IVPKVEMS  354 (778)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC-------TTCCHHHHHHHHHHHTTTC--CHHHHHHH
T ss_pred             CcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC-------CcCcHHHHHHHHHHHHhcC--CccHHHHH
Confidence            34454 5778899999999965  79999999999999997542       4678999999999999876  44558999


Q ss_pred             HhhhhhhccCHHHHHHHhhCHHHHHHHHHHhhc-CCCCcchhhhHHHHhcccCCCCC--CcchHHHHHHhhhcCCCCCCC
Q psy14464         84 AEGLAYLTLDAEVKEALIEDKPALAALVDVASS-GKPACTYGVVTTLVNLCNAYDKQ--EIIPEMIELAKFAKHHIPEDH  160 (175)
Q Consensus        84 iEGLAYlSL~p~VKE~L~~D~~~Lk~L~~llk~-~d~s~~YG~lsIl~NLTn~Y~~~--e~~~~l~~L~~ya~~~~pe~~  160 (175)
                      ||||||+|++|+|||+|++|+.||+.|+++++. .+++++||+++||+||| .|+|+  +++++|.+|++||++|.|+.|
T Consensus       355 vEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt-~~~~~~~~e~~~l~~Lk~~A~~~~p~~~  433 (778)
T 3opb_A          355 VEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS-TLPEEXXXXXXXXXXXXXXXXXXXPAAD  433 (778)
T ss_dssp             HHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT-CCCCCCCCCCC-----------------
T ss_pred             HHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCCcccchhhhhhhhhhhhccccCcccC
Confidence            999999999999999999999999999999995 79999999999999999 55553  346799999999999999888


Q ss_pred             CCCC----hHHHHH-HhhhC
Q psy14464        161 ELDD----PDFVTK-RLLVL  175 (175)
Q Consensus       161 pld~----d~~V~~-R~~~L  175 (175)
                      |.|+    |++|.. ||+.+
T Consensus       434 ~~d~~~~~~~~v~~~~~~~l  453 (778)
T 3opb_A          434 KVGAEKAAKEDILLFNEKYI  453 (778)
T ss_dssp             -CCTHHHHHHHHHHHHHHHT
T ss_pred             cccccccchHHHHHHHHHHH
Confidence            8555    678777 77653

PyMOL of 3opb

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		175
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.88
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.83
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.69
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.44
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.39
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	94.35
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	93.14
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	91.28
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	90.85
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	90.82
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	87.91
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	86.44

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00038  Score=57.79  Aligned_cols=117  Identities=22%  Similarity=0.254  Sum_probs=90.9

Q ss_pred             HHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhh
Q psy14464         10 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY   89 (175)
Q Consensus        10 ~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAY   89 (175)
                      .+....++-|-+++++++..++..|+.+|+++...   +..+.....  ..++...+.+.|.+. .+.+.++.|+..|.+
T Consensus        13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~---~~~~~~~~~--~~~~v~~l~~~L~~~-~~~~~~~~a~~~L~~   86 (529)
T d1jdha_          13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK---EASRHAIMR--SPQMVSAIVRTMQNT-NDVETARCTAGTLHN   86 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS---HHHHHHHHT--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---cHHHHHHHH--hhhHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            34456689999999999999999999999999753   111111111  245667777777543 356788999999999


Q ss_pred             hccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464         90 LTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC  133 (175)
Q Consensus        90 lSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT  133 (175)
                      ++.+++.+..+.+. ..+..|+.++++.+..+.+-++.++.||+
T Consensus        87 l~~~~~~~~~i~~~-g~i~~Li~lL~~~~~~v~~~a~~aL~~l~  129 (529)
T d1jdha_          87 LSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLL  129 (529)
T ss_dssp             HTTSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HhCCchhHHHHHHC-CCHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence            99999999999987 57899999999988899999999999998

PyMOL of d1jdha_

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure